Listing Endangered and Threatened Wildlife; 12-Month Findings on Petitions To List Spring-Run Oregon Coast Chinook Salmon and Spring-Run Southern Oregon and Northern California Coastal Chinook Salmon as Threatened or Endangered Under the Endangered Species Act, 45970-45974 [2021-17211]
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selecting File No. 25850 from the list of
available applications. These documents
are also available upon written request
via email to NMFS.Pr1Comments@
noaa.gov.
Written comments on this application
should be submitted via email to
NMFS.Pr1Comments@noaa.gov. Please
include File No. 25850 in the subject
line of the email comment.
Those individuals requesting a public
hearing should submit a written request
via email to NMFS.Pr1Comments@
noaa.gov. The request should set forth
the specific reasons why a hearing on
this application would be appropriate.
FOR FURTHER INFORMATION CONTACT:
Shasta McClenahan, Ph.D. or Jordan
Rutland, (301) 427–8401.
The
subject permit is requested under the
authority of the Marine Mammal
Protection Act of 1972, as amended
(MMPA; 16 U.S.C. 1361 et seq.) and the
regulations governing the taking and
importing of marine mammals (50 CFR
part 216).
The applicant proposes to import
biological samples from Canada for
stable isotope analysis to study trophic
ecology and distribution. An unlimited
number of samples from up to 40 killer
whales may be imported annually. The
requested duration of the permit is five
years.
In compliance with the National
Environmental Policy Act of 1969 (42
U.S.C. 4321 et seq.), an initial
determination has been made that the
activity proposed is categorically
excluded from the requirement to
prepare an environmental assessment or
environmental impact statement.
Concurrent with the publication of
this notice in the Federal Register,
NMFS is forwarding copies of the
application to the Marine Mammal
Commission and its Committee of
Scientific Advisors.
SUPPLEMENTARY INFORMATION:
Dated: August 12, 2021.
Julia Marie Harrison,
Chief, Permits and Conservation Division,
Office of Protected Resources, National
Marine Fisheries Service.
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DEPARTMENT OF COMMERCE
National Oceanic and Atmospheric
Administration
[Docket No. 210806–0159]
RTID 0648–XW032 and 0648–XW013
Listing Endangered and Threatened
Wildlife; 12-Month Findings on
Petitions To List Spring-Run Oregon
Coast Chinook Salmon and SpringRun Southern Oregon and Northern
California Coastal Chinook Salmon as
Threatened or Endangered Under the
Endangered Species Act
National Marine Fisheries
Service (NMFS), National Oceanic and
Atmospheric Administration (NOAA),
Commerce.
ACTION: Notice of 12-month petition
findings.
AGENCY:
We, NMFS, announce 12month findings on 2 petitions to list
populations of spring-run Chinook
salmon (Oncorhynchus tshawytscha) as
threatened or endangered Evolutionarily
Significant Units (ESUs) under the
Endangered Species Act (ESA) and to
designate critical habitat concurrently
with the listings. We have completed a
comprehensive analysis of Oregon Coast
(OC) and Southern Oregon and Northern
California Coastal (SONCC) spring-run
Chinook salmon populations in
response to the petitions. Based on the
best scientific and commercial data
available, including the ESU
configuration report, we have
determined that listing the OC and
SONCC spring-run Chinook salmon
populations as threatened or
endangered ESUs is not warranted. We
determined that the OC and SONCC
spring-run Chinook salmon populations
do not meet the ESU Policy criteria to
be considered ESUs separate from the
OC and SONCC fall-run Chinook
salmon populations and, therefore, do
not meet the statutory definition of a
species under the ESA. We also
announce the availability of an ESU
configuration report we prepared to
inform our determination.
DATES: These findings were made on
August 17, 2021.
ADDRESSES: The documents informing
the 12-month findings, including the
ESU configuration report (Ford et al.
2021), are available by submitting a
request to the Assistant Regional
Administrator, Protected Resources
Division, West Coast Regional Office,
501 W Ocean Blvd., Suite 4200, Long
Beach, CA 90802, Attention: OC and
SONCC spring-run Chinook salmon 12month Findings. The documents are
SUMMARY:
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also available electronically at https://
www.fisheries.noaa.gov/protectedresource-regulations?title=&field_
species_vocab_target_
id=Chinook+Salmon&sort_by=field_
relevant_date_value.
FOR FURTHER INFORMATION CONTACT: Gary
Rule, NMFS West Coast Region at
gary.rule@noaa.gov, (503) 230–5424; or
Heather Austin, NMFS Office of
Protected Resources at heather.austin@
noaa.gov, (301) 427–8422.
SUPPLEMENTARY INFORMATION:
Background
On September 24, 2019, the Secretary
of Commerce received a petition from
the Native Fish Society, Center for
Biological Diversity, and Umpqua
Watersheds (hereafter, the OC
Petitioners) to list OC spring-run
Chinook salmon as a threatened or
endangered ESU under the ESA.
Currently, OC spring-run Chinook
salmon populations are part of the OC
Chinook salmon ESU that combines
populations of spring- and fall-run
Chinook salmon and is not listed under
the ESA. The OC Petitioners request that
OC spring-run Chinook salmon be
considered as a separate ESU and listed
as threatened or endangered. The OC
Petitioners also request the designation
of critical habitat for OC spring-run
Chinook salmon concurrent with ESA
listing. On April 13, 2020, we published
a positive 90-day finding (85 FR 20476)
(RTID 0648–XW013) announcing that
the petition presented substantial
scientific or commercial information
indicating that the petitioned action
may be warranted. In our 90-day
finding, we also announced the
initiation of a status review to determine
whether the spring-run populations of
OC Chinook salmon constitute an ESU,
and, if so, whether that OC spring-run
Chinook salmon ESU is in danger of
extinction or likely to become so within
the foreseeable future throughout all or
a significant portion of its range; and we
requested information to inform our
status review.
On May 4, 2020, the Secretary of
Commerce received a petition from
Richard K. Nawa (hereafter, the SONCC
Petitioner, or Petitioners when referring
collectively to the OC Petitioners and
the SONCC Petitioner) to identify
SONCC spring-run Chinook salmon as a
separate ESU and list the ESU as
threatened or endangered under the
ESA. Currently, SONCC spring-run
Chinook salmon populations are part of
the SONCC Chinook salmon ESU that
combines populations of spring- and
fall-run Chinook salmon and is not
listed under the ESA. The SONCC
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Petitioner requests that SONCC springrun Chinook salmon be considered as a
separate ESU and listed as threatened or
endangered. The SONCC Petitioner also
requests the designation of critical
habitat for SONCC spring-run Chinook
salmon concurrent with ESA listing. On
March 16, 2021, we published a positive
90-day finding (86 FR 14407) (RTID
0648–XW032) announcing that the
petition presented substantial scientific
or commercial information indicating
that the petitioned action may be
warranted. In our 90-day finding, we
also announced the initiation of a status
review to determine whether the springrun populations of SONCC Chinook
salmon constitute an ESU, and, if so,
whether that SONCC spring-run
Chinook salmon ESU is in danger of
extinction or likely to become so within
the foreseeable future throughout all or
a significant portion of its range; and we
requested information to inform our
status review.
Listing Species Under the ESA
We are responsible for determining
whether species under our jurisdiction
are threatened or endangered under the
ESA (16 U.S.C. 1531 et seq.). To make
this determination, we first consider
whether a group of organisms
constitutes a ‘‘species’’ under section 3
of the ESA (16 U.S.C. 1532), and then,
if so, consider whether the status of the
species qualifies it for listing as either
threatened or endangered. Section 3 of
the ESA defines species to include any
subspecies of fish or wildlife or plants,
and any distinct population segment
(DPS) of any species of vertebrate fish or
wildlife which interbreeds when
mature. In 1991, we issued the Policy on
Applying the Definition of Species
Under the Endangered Species Act to
Pacific Salmon (‘‘ESU Policy’’; 56 FR
58612; November 20, 1991), which
explains that a Pacific salmon
population unit will be considered a
DPS, and hence a ‘‘species’’ under the
ESA, if it represents an ‘‘evolutionarily
significant unit’’ of the biological
species. The two criteria for delineating
an ESU are: (1) It is substantially
reproductively isolated from other
conspecific population units; and (2) it
represents an important component in
the evolutionary legacy of the species.
The ESU Policy is used exclusively for
delineating distinct population
segments of Pacific salmon. A joint
NMFS–U.S. Fish and Wildlife Service
(USFWS) (jointly, ‘‘the Services’’) policy
clarifies the Services’ interpretation of
the phrase ‘‘distinct population
segment’’ for the purposes of listing,
delisting, and reclassifying a species
under the ESA (‘‘DPS Policy’’; 61 FR
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4722; February 7, 1996). In announcing
this policy, the Services indicated that
the ESU Policy for Pacific salmon was
consistent with the DPS Policy and that
NMFS would continue to use the ESU
Policy for Pacific salmon.
Section 3 of the ESA further defines
an endangered species as any species
which is in danger of extinction
throughout all or a significant portion of
its range and a threatened species as one
which is likely to become an
endangered species within the
foreseeable future throughout all or a
significant portion of its range. Thus, we
interpret an ‘‘endangered species’’ to be
one that is presently in danger of
extinction. A ‘‘threatened species,’’ on
the other hand, is not presently in
danger of extinction, but is likely to
become so in the foreseeable future. In
other words, the primary statutory
difference between a threatened and
endangered species is the timing of
when a species may be in danger of
extinction, either presently
(endangered) or in the foreseeable future
(threatened).
Section 4(a)(1) of the ESA also
requires us to determine whether any
species is endangered or threatened as
a result of any of the following five
factors: The present or threatened
destruction, modification, or
curtailment of its habitat or range;
overutilization for commercial,
recreational, scientific, or educational
purposes; disease or predation; the
inadequacy of existing regulatory
mechanisms; or other natural or
manmade factors affecting its continued
existence (16 U.S.C. 1533(a)(1)(A)–(E)).
Section 4(b)(1)(A) of the ESA requires us
to make listing determinations based
solely on the best scientific and
commercial data available after
conducting a review of the status of the
species and after taking into account
efforts being made by any state or
foreign nation or political subdivision
thereof to protect the species. In
evaluating the efficacy of formalized
domestic conservation efforts that have
yet to be implemented or demonstrate
effectiveness, we rely on the Services’
joint Policy for Evaluation of
Conservation Efforts When Making
Listing Decisions (PECE; 68 FR 15100;
March 28, 2003).
Status Review
As part of our review of the
Petitioners’ requests to delineate the OC
and SONCC spring-run Chinook salmon
ESUs and list them as threatened or
endangered under the ESA, we formed
an expert panel (Panel) consisting of
scientists from NMFS Northwest
Fisheries Science Center and Southwest
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Fisheries Science Center. We asked the
Panel to provide: (1) An analysis and
review of the Petitioners’ claims that OC
and SONCC spring-run Chinook salmon
populations should be considered ESUs;
and, if any new ESUs were identified,
(2) a description of the demographic
risks (i.e., abundance, productivity,
spatial distribution and diversity) of the
new ESUs. The first task was for the
Panel to compile the best available
scientific and commercial information
relevant to re-evaluating the ESU
structure of the OC and SONCC Chinook
salmon ESUs, including information
provided by the Petitioners.
Specifically, the NMFS West Coast
Region (WCR) requested the Panel use
the criteria in the ESU Policy (56 FR
58612; November 20, 1991) to evaluate
whether the OC and/or SONCC springrun Chinook salmon populations should
be considered ESUs. If the Panel
concluded that one or both of the
spring-run Chinook salmon populations
should be considered a separate ESU,
and the WCR concurred, the Panel
would complete the second task of
describing the demographic risks, and
submit their report on both tasks to the
WCR. If the Panel concluded, and WCR
concurred, that there should not be a
change in the current ESU structure for
either ESU (i.e., the spring-run Chinook
salmon are part of the current ESU), the
Panel would finalize their ESU structure
findings and submit a report to the
WCR. Under this second scenario, the
Panel would not conduct a demographic
risk analysis of the OC or SONCC
spring-run Chinook salmon.
In order to complete their ESU
analysis, the Panel considered a variety
of scientific information from the
literature, unpublished documents, and
direct communications with researchers
working on the genetics of Chinook
salmon, as well as information
submitted to NMFS in response to the
90-day findings on the petitions.
Information that was not previously
peer-reviewed was formally reviewed by
the Panel. The Panel evaluated the
information provided by the Petitioners
and considered additional factors that
may contribute to our understanding of
the evolutionary significance of runtiming in Chinook salmon.
The Panel’s draft report was subjected
to independent peer review as required
by the Office of Management and
Budget (OMB) Final Information Quality
Bulletin for Peer Review (M–05–03;
December 16, 2004). The draft report
was peer reviewed by three independent
specialists selected from the academic
and scientific community, with
expertise in the genetic diversity and
biology of salmonids. The peer
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reviewers were asked to evaluate the
adequacy, appropriateness, and
application of data used in the report.
Of the three peer reviewers, two
responded with written comments and
the third responded informally that they
had no comments. All peer reviewer
comments were addressed prior to
dissemination and finalization of the
draft report and publication of these 12month findings.
We subsequently reviewed the report,
its cited references, and peer review
comments, and believe the report,
which informs our 12-month findings,
provides the best available scientific
and commercial information on the OC
and SONCC Chinook salmon ESUs.
Much of the information discussed
below is attributable to the report.
However, in making the 12-month
findings determination, we have
independently applied the statutory
provisions of the ESA, our regulations
regarding listing determinations (50 CFR
part 424), and our ESU Policy.
Previous Federal Actions
On March 9, 1998, following
completion of a comprehensive status
review of Chinook salmon (O.
tshawytscha) populations in
Washington, Oregon, Idaho, and
California, we published a proposed
rule to list seven Chinook salmon ESUs
as threatened or endangered under the
ESA (63 FR 11482). In this proposed
rule, we identified the OC Chinook
salmon ESU as comprised of coastal
populations of spring- and fall-run
Chinook salmon from the Elk River
north to the mouth of the Columbia
River (63 FR 11482, March 8, 1998). We
did not propose to list the OC ESU of
Chinook salmon under the ESA,
concluding that the ESU was neither in
danger of extinction nor likely to
become endangered in the foreseeable
future.
On September 16, 1999, following an
updated status review for four Chinook
salmon ESUs, we published a final rule
to list two Chinook salmon ESUs as
threatened under the ESA (64 FR
50394). In this 1999 final rule, we
identified the SONCC Chinook salmon
ESU as composed of coastal populations
of spring- and fall-run Chinook salmon
from Euchre Creek, Oregon, through the
Lower Klamath River, California
(inclusive) (64 FR 50394, September 16,
1999). After assessing information
concerning Chinook salmon abundance,
distribution, population trends, and
risks, and after considering efforts being
made to protect Chinook salmon, we
determined in this 1999 final rule that
the SONCC ESU of Chinook salmon did
not warrant listing under the ESA.
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Evolutionary Significant Unit Analysis
The Petitioners requested we
delineate and list the OC and SONCC
spring-run Chinook salmon populations
as ESUs. As described above, the ESU
Policy requires the consideration of two
elements when deciding whether a
population unit is an ESU: (1) It is
substantially reproductively isolated
from other conspecific population units;
and (2) it represents an important
component in the evolutionary legacy of
the species. The first criterion,
reproductive isolation, refers to
restricted interbreeding among
populations. Such isolation does not
have to be absolute, but it must be
strong enough to permit evolutionarily
important differences to accrue in
different population units. Information
that can be useful in determining the
degree of reproductive isolation
includes documentation of fish straying
from one population to another,
recolonization rates of other
populations, the efficacy of natural
barriers to migration, and measurements
of genetic differences between
populations. Each of these types of
information has its limitations.
Identification of physical barriers to
genetic exchange can help define the
geographic extent of distinct
populations but reliance on physical
features alone can be misleading in the
absence of supporting biological
information. Documentation of straying
between populations can provide
information about the movements of
individual fish but not the genetic
consequences of migration.
Furthermore, measurements of current
straying or recolonization rates provide
no direct information about the
magnitude or consistency of such rates
in the past. In this respect, data from the
analysis of genetic variation between
individuals or groups of fish can be very
useful because they reflect levels of gene
flow that have occurred over
evolutionary time scales.
To be considered an ESU, the
population must also represent an
important component in the
evolutionary legacy of the species. The
evolutionary legacy of a species is the
genetic variability that is a product of
past evolutionary events and which
represents the reservoir upon which
future evolutionary potential depends.
This second criterion would be met if
the population contributed substantially
to the ecological/genetic diversity of the
species as a whole. In other words, if the
population became extinct, would this
event represent a significant loss to the
ecological/genetic diversity of the entire
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species? In making this determination,
the following questions are relevant:
1. Is the population genetically
distinct from other conspecific
populations?
2. Does the population occupy
unusual or distinctive habitat?
3. Does the population show evidence
of unusual or distinctive adaptation to
its environment?
Several types of information are
useful in addressing these questions.
Again, the strengths and limitations of
the information will be considered in
making the determination. Phenotypic/
life-history traits, such as size,
fecundity, and age and time of spawning
may reflect local adaptations of
evolutionary importance, but
interpretation of these traits is
complicated by their sensitivity to
environmental conditions. Data from
DNA analysis provides valuable insight
into levels of overall genetic
differentiation among populations but
in many cases does not contain direct
information regarding the extent of
adaptive genetic differences. Habitat
differences suggest the possibility for
local adaptations but do not prove that
such adaptations exist.
Methods for Analyzing Genetic
Variation
Genetic variability within and
between populations of Chinook salmon
generally falls into two categories:
Neutral and adaptive genetic variation.
Most of the variation in a species’
genome (the sum total of an organism’s
DNA) has no influence on survival or
reproduction, and hence is considered
to be selectively neutral. Examining
patterns of selectively neutral variation
among individuals in populations is
very useful for understanding the
relationships between those individuals
and the histories of the populations. For
example, neutral variation can be used
to estimate the degree of gene flow or
interbreeding among different
populations, or the familial
relationships among specific
individuals. Adaptive genetic variation
refers to genes or regulatory regions of
the genome that have an effect on fitness
(survival or reproduction). Adaptive
genetic variation occurs when certain
DNA sequence variants in a population
help some members survive or
reproduce better than others.
Reproductive Isolation Criterion
The 1998 and 1999 coastwide status
reviews for Chinook salmon focused on
patterns of neutral genetic variation and
did not consider differences in run
timing (adaptive genetic variation) alone
to be indicative of substantial
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reproductive isolation. This conclusion
was due in part to the observed patterns
of genetic variation, in which spring-run
and fall-run fish spawning in the same
or nearby rivers were genetically similar
to each other and more similar to each
other than to populations of either run
type spawning in geographically distant
rivers (Myers et al. 1998; Busby et al.
1999). The Panel reviewed subsequent
genetic studies and found that they
clearly confirm the earlier findings that,
as a group, coastal spring-run Chinook
salmon are not a distinct evolutionary
lineage within the species, but rather
share their evolutionary history and
most of their genetic variation with the
fall-run Chinook salmon spawning in
the same and nearby rivers. In other
words, the patterns of genetic variation
coastwide indicate that spring-run
Chinook salmon spawning in different
rivers are generally more differentiated
from each other than they are to cooccurring fall-run Chinook salmon.
Although this pattern is apparent
when viewed on a coastwide scale, it is
important to note that most of the
coastwide Chinook salmon genetic
studies conducted over the past two
decades had few samples from the OC
and SONCC areas. The Oregon
Department of Fish and Wildlife
identified up to nine rivers in the
currently defined OC Chinook salmon
ESU as having either spring-run
populations or a spring-run or summerrun component to a population, but no
genetics study has included more than
three spring-run or summer-run
population samples, and spring-run or
summer-run samples have only been
analyzed for a total of four OC river
systems: Nehalem, Trask, Siletz, and
Umpqua rivers. Following a review of
the available information, the Panel
found that some of the samples from cooccurring spring-run and fall-run
populations in the OC areas do not
necessarily seem to be closely
genetically related. In particular,
Umpqua River spring-run (sampled
from the Rock Creek hatchery) tend to
cluster with SONCC samples of both run
types in a number of studies rather than
with Umpqua fall-run samples or other
OC fall-run samples (Myers et al. 1998;
Waples et al. 2004; Seeb et al. 2007;
Narum et al. 2008; Clemento et al. 2014;
Hecht et al. 2015; note that some studies
used the same set of samples so these
data are not all independent). This
pattern could indicate that Umpqua
River spring-run Chinook salmon are in
fact historically more closely related to
SONCC Chinook salmon, or could be a
result of past broodstock transfers from
the Rogue River (and elsewhere) into the
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Rock Creek Hatchery (as summarized by
Myers et al. 1998, Appendix D). In
addition, fall-run samples from the
Trask River Hatchery were more closely
related to other OC fall-run samples
than to Trask River Hatchery spring-run
samples (Beacham et al. 2006). A
similar pattern was seen in wild fall-run
and spring-run Chinook salmon from
the Siletz River (Davis et al. 2017).
Extensive out-of-basin spring-run (and
fall-run) Chinook salmon hatchery
releases in the Trask River may be an
explanation for this pattern. Similarly,
although relatively few spring-run
Chinook salmon hatchery releases have
occurred in the Siletz River, that basin
did receive more than 2 million
Columbia River hatchery Chinook
salmon releases between 1934 and 1952
(Myers et al. 1998, Appendix D).
Additional sampling and genetic
analysis of natural-origin fish across the
range of return timing in multiple OC
and SONCC rivers would help improve
our understanding of the genetic
relationships among OC and SONCC
Chinook salmon populations. However,
the available data does not indicate that
spring-run Chinook salmon spawning in
rivers on the Oregon Coast, as a group,
form a distinct lineage separate from OC
fall-run Chinook salmon.
The SONCC area is more thoroughly
sampled, particularly with respect to the
Rogue River basin. Within the SONCC
ESU, it is apparent that the close genetic
relationship between geographically
proximate spring-run and fall-run
Chinook salmon continues to be true
when viewed at the within-ESU scale.
In particular, in several studies, springrun and fall-run samples from the Rogue
River are more genetically related to
each other than either are to samples
from other rivers in the SONCC ESU. In
other words, within the currently
delineated SONCC Chinook salmon
ESU, spring-run and fall-run fish
spawning in the Rogue River appear to
reproduce more with each other than
with fall-run fish spawning in other
rivers in the ESU. The Panel found that
this pattern is similar to what has been
reported in the Upper Klamath and
Trinity Rivers (Anderson and Garza
2018), and is also apparent in the Puget
Sound and Lower Columbia Chinook
ESUs.
In addition to neutral genetic
variation, adaptive genetic variation has
been used to identify differences
between individual fish or groups of
fish. An example is the gene-region that
has been associated with run-timing in
Chinook salmon and steelhead, the
GREB1L gene (otherwise referred to as
the GREB1L region of the genome). Hess
et al. (2016), Prince et al. (2017) and
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45973
Thompson et al. (2019a) characterized
the GREB1L region as two alleles
(different forms) and three genotypes
(different combinations of the two
alleles): Individuals with two early runtiming alleles (early run homozygotes),
individuals with two late run-timing
alleles (late run homozygotes), and
individuals with one allele for the early
and one for the late run-timing
(heterozygotes). There are five recent
studies that have examined run-timeassociated variants in the GREB1L
region in OC and SONCC Chinook
samples (Prince et al. 2017; Anderson &
Garza 2018; Thompson et al. 2019a;
O’Malley et al. 2020a; O’Malley et al.
2020b). These studies have found that
heterozygotes are common, indicating
that interbreeding between fish
homozygous for the spring-run and fallrun variants is commonly occurring.
This pattern has been extensively
studied in the Rogue River basin of the
SONCC ESU (Thompson et al. 2019;
O’Malley et al. 2020a; O’Malley et al.
2020b), where researchers have obtained
relatively large sample sizes of fish
based on carcass surveys and surveys of
captured live fish conducted throughout
the run. For the OC, the only river that
has been sampled using the GREB1L
markers is the Siletz River (Anderson
and Garza 2018; Thompson et al. 2020).
That study also found substantial
proportions of heterozygotes,
particularly among fish that returned to
the river early and were identified as
spring-run (29 percent). A similarly high
proportion of GREB1L region
heterozygotes have been found in other
coastal Chinook salmon ESUs (Upper
Klamath River, Anderson and Garza
2018; Rogue River, Thompson et al.
2019a; Washington Coast, Thompson et
al. 2019b).
The GREB1L region has been
demonstrated to be highly associated
with run timing in multiple populations
of coastal Chinook salmon (i.e., coastal
spring-run Chinook salmon are
homozygous for the early alleles, and
fall-run Chinook are homozygous for the
late alleles—Anderson and Garza 2018,
Thompson et al. 2019a,b, O’Malley et al.
2020, Thompson et al. 2020). The
finding of substantial proportions of
heterozygotes provides evidence of
contemporary interbreeding between
alternative homozygotes at the GREB1L
region. This, in turn, implies that
mating among spring-run and fall-run
(and likely intermediate timed) fish is
common in multiple watersheds
(reviewed by Ford et al. 2020). Analysis
of recombination events (Anderson and
Garza 2018, Thompson et al. 2020) also
indicates that at least in the Upper
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Federal Register / Vol. 86, No. 156 / Tuesday, August 17, 2021 / Notices
Klamath River, such interbreeding must
have also occurred historically at some
level, although the rate of interbreeding
was not determined and could be lower
than is seen now.
In both the OC and the SONCC ESUs,
there is therefore strong evidence from
GREB1L region markers that
interbreeding between spring-run and
fall-run Chinook salmon is common, at
least for the two watersheds that have
been studied to date (Rogue River, Siletz
River). However, the data do not
indicate whether the current levels of
interbreeding occurred historically
under more pristine conditions. Patterns
of random genomic variation (indicative
of population history) indicate that
spring-run Chinook salmon in the OC
and SONCC ESUs are, as a group, not
substantially reproductively isolated
from fall-run Chinook spawning in the
OC and SONCC rivers. There is some
indication that spring-run Chinook
salmon in the Umpqua River may have
somewhat reduced gene flow from other
OC fall-run and spring-run Chinook
salmon populations, but past hatchery
practices may have also influenced this
result. As a whole, however, the
available data indicate that the springrun portions of the OC and SONCC
ESUs are not substantially
reproductively isolated from the fall-run
populations in the ESUs. Additional
genetic sampling of fish throughout the
period of migration in multiple
populations, especially in the OC ESU,
would be very helpful for further
evaluating this question.
khammond on DSKJM1Z7X2PROD with NOTICES
Evolutionary Legacy Criterion
The early run-timing trait is an
important component of diversity
within the Chinook salmon species. In
particular, the trait allows Chinook
salmon to access upstream habitats that
are inaccessible to later returning fish in
some years. Run time diversity as a
whole is also expected to increase
viability by broadening the portfolio of
traits within a species or an ESU, which
leads to increased resilience to
environmental variation (Quinn et al.
2016). Recent reviews of ESU/DPS
configurations of Chinook salmon
(Anderson et al. 2018) and steelhead
(Pearse et al. 2019) support this point,
as does a recent expert workshop report
(Ford et al. 2020) and the original
coastwide status review of Chinook
salmon (Myers et al. 1998). Recovery
plans for Chinook salmon ESUs that
contain populations with both springrun and fall-run fish also emphasize the
importance of recovering populations
VerDate Sep<11>2014
17:08 Aug 16, 2021
Jkt 253001
with both life-history strategies (Shared
Strategy Development Committee 2007;
Dornbush 2013; Pearse et al. 2019).
While recognizing the importance of
run-timing variation to species and ESU
viability, Myers et al. (1998) concluded
that patterns of genetic variation and
patterns of variation for other lifehistory traits indicated that coastal
spring- and fall-run Chinook salmon
shared the same recent evolutionary
history. Coastal ESUs were identified
based on concordant patterns of genetic,
life-history, and geographic variation,
with run-timing variation considered to
be an important element of diversity
within ESUs. Subsequent reports of
Upper Klamath Trinity River Chinook
salmon and Northern California
steelhead have reached the same
conclusion (Williams et al. 2013,
Anderson et al. 2018, Pearse et al. 2019).
Recent genetic studies have greatly
increased our knowledge of the genetic
basis of run-timing variation, but these
studies do not change or invalidate the
previous conclusion that spring-run and
fall-run Chinook salmon in the currently
delineated OC and SONCC Chinook
salmon ESUs share a recent
evolutionary legacy, and they are, on the
whole, more genetically similar to each
other than to populations in other ESUs.
The two run types display similar
characteristics in other life-history
traits, and are genetically similar to each
other due to a combination of recent
common ancestry and ongoing
interbreeding. Identifying a spring-runonly Chinook salmon ESU for either the
OC or SONCC areas would therefore be
inconsistent with our ESU policy, both
because of high levels of interbreeding
between spring-run and fall-run fish in
these ESUs and because spring-run fish,
as a group, in these ESUs do not form
a distinct evolutionary lineage within
the species.
Conclusions on the Evolutionarily
Significant Unit Analysis
The Panel concluded, and the WCR
concurred, that the best available
information indicates that OC and
SONCC spring-run Chinook salmon
populations do not meet the
reproductive isolation and genetic
legacy criteria of the ESU Policy. The
spring-run phenotype and the springrun variant within the GREB1L
chromosomal region are clearly an
important part of the diversity within
the Chinook salmon species, but the
available data indicate that spring-run
Chinook salmon in the OC and SONCC
ESUs regularly interbreed with and
PO 00000
Frm 00023
Fmt 4703
Sfmt 4703
share a recent evolutionary history
throughout the vast majority of their
genome with fall-run Chinook salmon in
the same rivers.
Final Determination
Section 4(b)(1) of the ESA requires
that NMFS make listing determinations
based solely on the best scientific and
commercial data available after
conducting a review of the status of the
species and taking into account those
efforts, if any, being made by any state
or foreign nation, or political
subdivisions thereof, to protect and
conserve the species. We have
independently reviewed the best
available scientific and commercial
information, including the information
provided in the petitions and public
comments submitted on the 90-day
findings (85 FR 20476, April 13, 2020;
86 FR 14407, March 16, 2021), the ESU
configuration review report, and other
published and unpublished
information, and have consulted with
species experts and individuals familiar
with the OC and SONCC Chinook
salmon ESUs.
Our determination set forth here is
based on a synthesis and integration of
the foregoing information. Based on our
consideration of the best available
scientific and commercial information,
as summarized here and in the ESU
configuration report, we conclude that
OC and SONCC spring-run Chinook
salmon populations do not constitute
ESUs. Accordingly, OC and SONCC
spring-run Chinook salmon populations
do not meet the statutory definition of
a species, and thus, OC and SONCC
spring-run Chinook salmon populations
do not warrant listing under the ESA.
This is a final action, and, therefore,
we are not soliciting public comments.
References
A complete list of all references cited
herein is available upon request (see FOR
FURTHER INFORMATION CONTACT).
Authority
The authority for this action is the
Endangered Species Act of 1973, as
amended (16 U.S.C. 1531 et seq.).
Dated: August 6, 2021.
Samuel D. Rauch, III,
Deputy Assistant Administrator for
Regulatory Programs, National Marine
Fisheries Service.
[FR Doc. 2021–17211 Filed 8–16–21; 8:45 am]
BILLING CODE 3510–22–P
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[Federal Register Volume 86, Number 156 (Tuesday, August 17, 2021)]
[Notices]
[Pages 45970-45974]
From the Federal Register Online via the Government Publishing Office [www.gpo.gov]
[FR Doc No: 2021-17211]
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DEPARTMENT OF COMMERCE
National Oceanic and Atmospheric Administration
[Docket No. 210806-0159]
RTID 0648-XW032 and 0648-XW013
Listing Endangered and Threatened Wildlife; 12-Month Findings on
Petitions To List Spring-Run Oregon Coast Chinook Salmon and Spring-Run
Southern Oregon and Northern California Coastal Chinook Salmon as
Threatened or Endangered Under the Endangered Species Act
AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and
Atmospheric Administration (NOAA), Commerce.
ACTION: Notice of 12-month petition findings.
-----------------------------------------------------------------------
SUMMARY: We, NMFS, announce 12-month findings on 2 petitions to list
populations of spring-run Chinook salmon (Oncorhynchus tshawytscha) as
threatened or endangered Evolutionarily Significant Units (ESUs) under
the Endangered Species Act (ESA) and to designate critical habitat
concurrently with the listings. We have completed a comprehensive
analysis of Oregon Coast (OC) and Southern Oregon and Northern
California Coastal (SONCC) spring-run Chinook salmon populations in
response to the petitions. Based on the best scientific and commercial
data available, including the ESU configuration report, we have
determined that listing the OC and SONCC spring-run Chinook salmon
populations as threatened or endangered ESUs is not warranted. We
determined that the OC and SONCC spring-run Chinook salmon populations
do not meet the ESU Policy criteria to be considered ESUs separate from
the OC and SONCC fall-run Chinook salmon populations and, therefore, do
not meet the statutory definition of a species under the ESA. We also
announce the availability of an ESU configuration report we prepared to
inform our determination.
DATES: These findings were made on August 17, 2021.
ADDRESSES: The documents informing the 12-month findings, including the
ESU configuration report (Ford et al. 2021), are available by
submitting a request to the Assistant Regional Administrator, Protected
Resources Division, West Coast Regional Office, 501 W Ocean Blvd.,
Suite 4200, Long Beach, CA 90802, Attention: OC and SONCC spring-run
Chinook salmon 12-month Findings. The documents are also available
electronically at https://www.fisheries.noaa.gov/protected-resource-regulations?title=&field_species_vocab_target_id=Chinook+Salmon&sort_by=field_relevant_date_value.
FOR FURTHER INFORMATION CONTACT: Gary Rule, NMFS West Coast Region at
[email protected], (503) 230-5424; or Heather Austin, NMFS Office of
Protected Resources at [email protected], (301) 427-8422.
SUPPLEMENTARY INFORMATION:
Background
On September 24, 2019, the Secretary of Commerce received a
petition from the Native Fish Society, Center for Biological Diversity,
and Umpqua Watersheds (hereafter, the OC Petitioners) to list OC
spring-run Chinook salmon as a threatened or endangered ESU under the
ESA. Currently, OC spring-run Chinook salmon populations are part of
the OC Chinook salmon ESU that combines populations of spring- and
fall-run Chinook salmon and is not listed under the ESA. The OC
Petitioners request that OC spring-run Chinook salmon be considered as
a separate ESU and listed as threatened or endangered. The OC
Petitioners also request the designation of critical habitat for OC
spring-run Chinook salmon concurrent with ESA listing. On April 13,
2020, we published a positive 90-day finding (85 FR 20476) (RTID 0648-
XW013) announcing that the petition presented substantial scientific or
commercial information indicating that the petitioned action may be
warranted. In our 90-day finding, we also announced the initiation of a
status review to determine whether the spring-run populations of OC
Chinook salmon constitute an ESU, and, if so, whether that OC spring-
run Chinook salmon ESU is in danger of extinction or likely to become
so within the foreseeable future throughout all or a significant
portion of its range; and we requested information to inform our status
review.
On May 4, 2020, the Secretary of Commerce received a petition from
Richard K. Nawa (hereafter, the SONCC Petitioner, or Petitioners when
referring collectively to the OC Petitioners and the SONCC Petitioner)
to identify SONCC spring-run Chinook salmon as a separate ESU and list
the ESU as threatened or endangered under the ESA. Currently, SONCC
spring-run Chinook salmon populations are part of the SONCC Chinook
salmon ESU that combines populations of spring- and fall-run Chinook
salmon and is not listed under the ESA. The SONCC
[[Page 45971]]
Petitioner requests that SONCC spring-run Chinook salmon be considered
as a separate ESU and listed as threatened or endangered. The SONCC
Petitioner also requests the designation of critical habitat for SONCC
spring-run Chinook salmon concurrent with ESA listing. On March 16,
2021, we published a positive 90-day finding (86 FR 14407) (RTID 0648-
XW032) announcing that the petition presented substantial scientific or
commercial information indicating that the petitioned action may be
warranted. In our 90-day finding, we also announced the initiation of a
status review to determine whether the spring-run populations of SONCC
Chinook salmon constitute an ESU, and, if so, whether that SONCC
spring-run Chinook salmon ESU is in danger of extinction or likely to
become so within the foreseeable future throughout all or a significant
portion of its range; and we requested information to inform our status
review.
Listing Species Under the ESA
We are responsible for determining whether species under our
jurisdiction are threatened or endangered under the ESA (16 U.S.C. 1531
et seq.). To make this determination, we first consider whether a group
of organisms constitutes a ``species'' under section 3 of the ESA (16
U.S.C. 1532), and then, if so, consider whether the status of the
species qualifies it for listing as either threatened or endangered.
Section 3 of the ESA defines species to include any subspecies of fish
or wildlife or plants, and any distinct population segment (DPS) of any
species of vertebrate fish or wildlife which interbreeds when mature.
In 1991, we issued the Policy on Applying the Definition of Species
Under the Endangered Species Act to Pacific Salmon (``ESU Policy''; 56
FR 58612; November 20, 1991), which explains that a Pacific salmon
population unit will be considered a DPS, and hence a ``species'' under
the ESA, if it represents an ``evolutionarily significant unit'' of the
biological species. The two criteria for delineating an ESU are: (1) It
is substantially reproductively isolated from other conspecific
population units; and (2) it represents an important component in the
evolutionary legacy of the species. The ESU Policy is used exclusively
for delineating distinct population segments of Pacific salmon. A joint
NMFS-U.S. Fish and Wildlife Service (USFWS) (jointly, ``the Services'')
policy clarifies the Services' interpretation of the phrase ``distinct
population segment'' for the purposes of listing, delisting, and
reclassifying a species under the ESA (``DPS Policy''; 61 FR 4722;
February 7, 1996). In announcing this policy, the Services indicated
that the ESU Policy for Pacific salmon was consistent with the DPS
Policy and that NMFS would continue to use the ESU Policy for Pacific
salmon.
Section 3 of the ESA further defines an endangered species as any
species which is in danger of extinction throughout all or a
significant portion of its range and a threatened species as one which
is likely to become an endangered species within the foreseeable future
throughout all or a significant portion of its range. Thus, we
interpret an ``endangered species'' to be one that is presently in
danger of extinction. A ``threatened species,'' on the other hand, is
not presently in danger of extinction, but is likely to become so in
the foreseeable future. In other words, the primary statutory
difference between a threatened and endangered species is the timing of
when a species may be in danger of extinction, either presently
(endangered) or in the foreseeable future (threatened).
Section 4(a)(1) of the ESA also requires us to determine whether
any species is endangered or threatened as a result of any of the
following five factors: The present or threatened destruction,
modification, or curtailment of its habitat or range; overutilization
for commercial, recreational, scientific, or educational purposes;
disease or predation; the inadequacy of existing regulatory mechanisms;
or other natural or manmade factors affecting its continued existence
(16 U.S.C. 1533(a)(1)(A)-(E)). Section 4(b)(1)(A) of the ESA requires
us to make listing determinations based solely on the best scientific
and commercial data available after conducting a review of the status
of the species and after taking into account efforts being made by any
state or foreign nation or political subdivision thereof to protect the
species. In evaluating the efficacy of formalized domestic conservation
efforts that have yet to be implemented or demonstrate effectiveness,
we rely on the Services' joint Policy for Evaluation of Conservation
Efforts When Making Listing Decisions (PECE; 68 FR 15100; March 28,
2003).
Status Review
As part of our review of the Petitioners' requests to delineate the
OC and SONCC spring-run Chinook salmon ESUs and list them as threatened
or endangered under the ESA, we formed an expert panel (Panel)
consisting of scientists from NMFS Northwest Fisheries Science Center
and Southwest Fisheries Science Center. We asked the Panel to provide:
(1) An analysis and review of the Petitioners' claims that OC and SONCC
spring-run Chinook salmon populations should be considered ESUs; and,
if any new ESUs were identified, (2) a description of the demographic
risks (i.e., abundance, productivity, spatial distribution and
diversity) of the new ESUs. The first task was for the Panel to compile
the best available scientific and commercial information relevant to
re-evaluating the ESU structure of the OC and SONCC Chinook salmon
ESUs, including information provided by the Petitioners. Specifically,
the NMFS West Coast Region (WCR) requested the Panel use the criteria
in the ESU Policy (56 FR 58612; November 20, 1991) to evaluate whether
the OC and/or SONCC spring-run Chinook salmon populations should be
considered ESUs. If the Panel concluded that one or both of the spring-
run Chinook salmon populations should be considered a separate ESU, and
the WCR concurred, the Panel would complete the second task of
describing the demographic risks, and submit their report on both tasks
to the WCR. If the Panel concluded, and WCR concurred, that there
should not be a change in the current ESU structure for either ESU
(i.e., the spring-run Chinook salmon are part of the current ESU), the
Panel would finalize their ESU structure findings and submit a report
to the WCR. Under this second scenario, the Panel would not conduct a
demographic risk analysis of the OC or SONCC spring-run Chinook salmon.
In order to complete their ESU analysis, the Panel considered a
variety of scientific information from the literature, unpublished
documents, and direct communications with researchers working on the
genetics of Chinook salmon, as well as information submitted to NMFS in
response to the 90-day findings on the petitions. Information that was
not previously peer-reviewed was formally reviewed by the Panel. The
Panel evaluated the information provided by the Petitioners and
considered additional factors that may contribute to our understanding
of the evolutionary significance of run-timing in Chinook salmon.
The Panel's draft report was subjected to independent peer review
as required by the Office of Management and Budget (OMB) Final
Information Quality Bulletin for Peer Review (M-05-03; December 16,
2004). The draft report was peer reviewed by three independent
specialists selected from the academic and scientific community, with
expertise in the genetic diversity and biology of salmonids. The peer
[[Page 45972]]
reviewers were asked to evaluate the adequacy, appropriateness, and
application of data used in the report. Of the three peer reviewers,
two responded with written comments and the third responded informally
that they had no comments. All peer reviewer comments were addressed
prior to dissemination and finalization of the draft report and
publication of these 12-month findings.
We subsequently reviewed the report, its cited references, and peer
review comments, and believe the report, which informs our 12-month
findings, provides the best available scientific and commercial
information on the OC and SONCC Chinook salmon ESUs. Much of the
information discussed below is attributable to the report. However, in
making the 12-month findings determination, we have independently
applied the statutory provisions of the ESA, our regulations regarding
listing determinations (50 CFR part 424), and our ESU Policy.
Previous Federal Actions
On March 9, 1998, following completion of a comprehensive status
review of Chinook salmon (O. tshawytscha) populations in Washington,
Oregon, Idaho, and California, we published a proposed rule to list
seven Chinook salmon ESUs as threatened or endangered under the ESA (63
FR 11482). In this proposed rule, we identified the OC Chinook salmon
ESU as comprised of coastal populations of spring- and fall-run Chinook
salmon from the Elk River north to the mouth of the Columbia River (63
FR 11482, March 8, 1998). We did not propose to list the OC ESU of
Chinook salmon under the ESA, concluding that the ESU was neither in
danger of extinction nor likely to become endangered in the foreseeable
future.
On September 16, 1999, following an updated status review for four
Chinook salmon ESUs, we published a final rule to list two Chinook
salmon ESUs as threatened under the ESA (64 FR 50394). In this 1999
final rule, we identified the SONCC Chinook salmon ESU as composed of
coastal populations of spring- and fall-run Chinook salmon from Euchre
Creek, Oregon, through the Lower Klamath River, California (inclusive)
(64 FR 50394, September 16, 1999). After assessing information
concerning Chinook salmon abundance, distribution, population trends,
and risks, and after considering efforts being made to protect Chinook
salmon, we determined in this 1999 final rule that the SONCC ESU of
Chinook salmon did not warrant listing under the ESA.
Evolutionary Significant Unit Analysis
The Petitioners requested we delineate and list the OC and SONCC
spring-run Chinook salmon populations as ESUs. As described above, the
ESU Policy requires the consideration of two elements when deciding
whether a population unit is an ESU: (1) It is substantially
reproductively isolated from other conspecific population units; and
(2) it represents an important component in the evolutionary legacy of
the species. The first criterion, reproductive isolation, refers to
restricted interbreeding among populations. Such isolation does not
have to be absolute, but it must be strong enough to permit
evolutionarily important differences to accrue in different population
units. Information that can be useful in determining the degree of
reproductive isolation includes documentation of fish straying from one
population to another, recolonization rates of other populations, the
efficacy of natural barriers to migration, and measurements of genetic
differences between populations. Each of these types of information has
its limitations. Identification of physical barriers to genetic
exchange can help define the geographic extent of distinct populations
but reliance on physical features alone can be misleading in the
absence of supporting biological information. Documentation of straying
between populations can provide information about the movements of
individual fish but not the genetic consequences of migration.
Furthermore, measurements of current straying or recolonization rates
provide no direct information about the magnitude or consistency of
such rates in the past. In this respect, data from the analysis of
genetic variation between individuals or groups of fish can be very
useful because they reflect levels of gene flow that have occurred over
evolutionary time scales.
To be considered an ESU, the population must also represent an
important component in the evolutionary legacy of the species. The
evolutionary legacy of a species is the genetic variability that is a
product of past evolutionary events and which represents the reservoir
upon which future evolutionary potential depends. This second criterion
would be met if the population contributed substantially to the
ecological/genetic diversity of the species as a whole. In other words,
if the population became extinct, would this event represent a
significant loss to the ecological/genetic diversity of the entire
species? In making this determination, the following questions are
relevant:
1. Is the population genetically distinct from other conspecific
populations?
2. Does the population occupy unusual or distinctive habitat?
3. Does the population show evidence of unusual or distinctive
adaptation to its environment?
Several types of information are useful in addressing these
questions. Again, the strengths and limitations of the information will
be considered in making the determination. Phenotypic/life-history
traits, such as size, fecundity, and age and time of spawning may
reflect local adaptations of evolutionary importance, but
interpretation of these traits is complicated by their sensitivity to
environmental conditions. Data from DNA analysis provides valuable
insight into levels of overall genetic differentiation among
populations but in many cases does not contain direct information
regarding the extent of adaptive genetic differences. Habitat
differences suggest the possibility for local adaptations but do not
prove that such adaptations exist.
Methods for Analyzing Genetic Variation
Genetic variability within and between populations of Chinook
salmon generally falls into two categories: Neutral and adaptive
genetic variation. Most of the variation in a species' genome (the sum
total of an organism's DNA) has no influence on survival or
reproduction, and hence is considered to be selectively neutral.
Examining patterns of selectively neutral variation among individuals
in populations is very useful for understanding the relationships
between those individuals and the histories of the populations. For
example, neutral variation can be used to estimate the degree of gene
flow or interbreeding among different populations, or the familial
relationships among specific individuals. Adaptive genetic variation
refers to genes or regulatory regions of the genome that have an effect
on fitness (survival or reproduction). Adaptive genetic variation
occurs when certain DNA sequence variants in a population help some
members survive or reproduce better than others.
Reproductive Isolation Criterion
The 1998 and 1999 coastwide status reviews for Chinook salmon
focused on patterns of neutral genetic variation and did not consider
differences in run timing (adaptive genetic variation) alone to be
indicative of substantial
[[Page 45973]]
reproductive isolation. This conclusion was due in part to the observed
patterns of genetic variation, in which spring-run and fall-run fish
spawning in the same or nearby rivers were genetically similar to each
other and more similar to each other than to populations of either run
type spawning in geographically distant rivers (Myers et al. 1998;
Busby et al. 1999). The Panel reviewed subsequent genetic studies and
found that they clearly confirm the earlier findings that, as a group,
coastal spring-run Chinook salmon are not a distinct evolutionary
lineage within the species, but rather share their evolutionary history
and most of their genetic variation with the fall-run Chinook salmon
spawning in the same and nearby rivers. In other words, the patterns of
genetic variation coastwide indicate that spring-run Chinook salmon
spawning in different rivers are generally more differentiated from
each other than they are to co-occurring fall-run Chinook salmon.
Although this pattern is apparent when viewed on a coastwide scale,
it is important to note that most of the coastwide Chinook salmon
genetic studies conducted over the past two decades had few samples
from the OC and SONCC areas. The Oregon Department of Fish and Wildlife
identified up to nine rivers in the currently defined OC Chinook salmon
ESU as having either spring-run populations or a spring-run or summer-
run component to a population, but no genetics study has included more
than three spring-run or summer-run population samples, and spring-run
or summer-run samples have only been analyzed for a total of four OC
river systems: Nehalem, Trask, Siletz, and Umpqua rivers. Following a
review of the available information, the Panel found that some of the
samples from co-occurring spring-run and fall-run populations in the OC
areas do not necessarily seem to be closely genetically related. In
particular, Umpqua River spring-run (sampled from the Rock Creek
hatchery) tend to cluster with SONCC samples of both run types in a
number of studies rather than with Umpqua fall-run samples or other OC
fall-run samples (Myers et al. 1998; Waples et al. 2004; Seeb et al.
2007; Narum et al. 2008; Clemento et al. 2014; Hecht et al. 2015; note
that some studies used the same set of samples so these data are not
all independent). This pattern could indicate that Umpqua River spring-
run Chinook salmon are in fact historically more closely related to
SONCC Chinook salmon, or could be a result of past broodstock transfers
from the Rogue River (and elsewhere) into the Rock Creek Hatchery (as
summarized by Myers et al. 1998, Appendix D). In addition, fall-run
samples from the Trask River Hatchery were more closely related to
other OC fall-run samples than to Trask River Hatchery spring-run
samples (Beacham et al. 2006). A similar pattern was seen in wild fall-
run and spring-run Chinook salmon from the Siletz River (Davis et al.
2017). Extensive out-of-basin spring-run (and fall-run) Chinook salmon
hatchery releases in the Trask River may be an explanation for this
pattern. Similarly, although relatively few spring-run Chinook salmon
hatchery releases have occurred in the Siletz River, that basin did
receive more than 2 million Columbia River hatchery Chinook salmon
releases between 1934 and 1952 (Myers et al. 1998, Appendix D).
Additional sampling and genetic analysis of natural-origin fish across
the range of return timing in multiple OC and SONCC rivers would help
improve our understanding of the genetic relationships among OC and
SONCC Chinook salmon populations. However, the available data does not
indicate that spring-run Chinook salmon spawning in rivers on the
Oregon Coast, as a group, form a distinct lineage separate from OC
fall-run Chinook salmon.
The SONCC area is more thoroughly sampled, particularly with
respect to the Rogue River basin. Within the SONCC ESU, it is apparent
that the close genetic relationship between geographically proximate
spring-run and fall-run Chinook salmon continues to be true when viewed
at the within-ESU scale. In particular, in several studies, spring-run
and fall-run samples from the Rogue River are more genetically related
to each other than either are to samples from other rivers in the SONCC
ESU. In other words, within the currently delineated SONCC Chinook
salmon ESU, spring-run and fall-run fish spawning in the Rogue River
appear to reproduce more with each other than with fall-run fish
spawning in other rivers in the ESU. The Panel found that this pattern
is similar to what has been reported in the Upper Klamath and Trinity
Rivers (Anderson and Garza 2018), and is also apparent in the Puget
Sound and Lower Columbia Chinook ESUs.
In addition to neutral genetic variation, adaptive genetic
variation has been used to identify differences between individual fish
or groups of fish. An example is the gene-region that has been
associated with run-timing in Chinook salmon and steelhead, the GREB1L
gene (otherwise referred to as the GREB1L region of the genome). Hess
et al. (2016), Prince et al. (2017) and Thompson et al. (2019a)
characterized the GREB1L region as two alleles (different forms) and
three genotypes (different combinations of the two alleles):
Individuals with two early run-timing alleles (early run homozygotes),
individuals with two late run-timing alleles (late run homozygotes),
and individuals with one allele for the early and one for the late run-
timing (heterozygotes). There are five recent studies that have
examined run-time-associated variants in the GREB1L region in OC and
SONCC Chinook samples (Prince et al. 2017; Anderson & Garza 2018;
Thompson et al. 2019a; O'Malley et al. 2020a; O'Malley et al. 2020b).
These studies have found that heterozygotes are common, indicating that
interbreeding between fish homozygous for the spring-run and fall-run
variants is commonly occurring. This pattern has been extensively
studied in the Rogue River basin of the SONCC ESU (Thompson et al.
2019; O'Malley et al. 2020a; O'Malley et al. 2020b), where researchers
have obtained relatively large sample sizes of fish based on carcass
surveys and surveys of captured live fish conducted throughout the run.
For the OC, the only river that has been sampled using the GREB1L
markers is the Siletz River (Anderson and Garza 2018; Thompson et al.
2020). That study also found substantial proportions of heterozygotes,
particularly among fish that returned to the river early and were
identified as spring-run (29 percent). A similarly high proportion of
GREB1L region heterozygotes have been found in other coastal Chinook
salmon ESUs (Upper Klamath River, Anderson and Garza 2018; Rogue River,
Thompson et al. 2019a; Washington Coast, Thompson et al. 2019b).
The GREB1L region has been demonstrated to be highly associated
with run timing in multiple populations of coastal Chinook salmon
(i.e., coastal spring-run Chinook salmon are homozygous for the early
alleles, and fall-run Chinook are homozygous for the late alleles--
Anderson and Garza 2018, Thompson et al. 2019a,b, O'Malley et al. 2020,
Thompson et al. 2020). The finding of substantial proportions of
heterozygotes provides evidence of contemporary interbreeding between
alternative homozygotes at the GREB1L region. This, in turn, implies
that mating among spring-run and fall-run (and likely intermediate
timed) fish is common in multiple watersheds (reviewed by Ford et al.
2020). Analysis of recombination events (Anderson and Garza 2018,
Thompson et al. 2020) also indicates that at least in the Upper
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Klamath River, such interbreeding must have also occurred historically
at some level, although the rate of interbreeding was not determined
and could be lower than is seen now.
In both the OC and the SONCC ESUs, there is therefore strong
evidence from GREB1L region markers that interbreeding between spring-
run and fall-run Chinook salmon is common, at least for the two
watersheds that have been studied to date (Rogue River, Siletz River).
However, the data do not indicate whether the current levels of
interbreeding occurred historically under more pristine conditions.
Patterns of random genomic variation (indicative of population history)
indicate that spring-run Chinook salmon in the OC and SONCC ESUs are,
as a group, not substantially reproductively isolated from fall-run
Chinook spawning in the OC and SONCC rivers. There is some indication
that spring-run Chinook salmon in the Umpqua River may have somewhat
reduced gene flow from other OC fall-run and spring-run Chinook salmon
populations, but past hatchery practices may have also influenced this
result. As a whole, however, the available data indicate that the
spring-run portions of the OC and SONCC ESUs are not substantially
reproductively isolated from the fall-run populations in the ESUs.
Additional genetic sampling of fish throughout the period of migration
in multiple populations, especially in the OC ESU, would be very
helpful for further evaluating this question.
Evolutionary Legacy Criterion
The early run-timing trait is an important component of diversity
within the Chinook salmon species. In particular, the trait allows
Chinook salmon to access upstream habitats that are inaccessible to
later returning fish in some years. Run time diversity as a whole is
also expected to increase viability by broadening the portfolio of
traits within a species or an ESU, which leads to increased resilience
to environmental variation (Quinn et al. 2016). Recent reviews of ESU/
DPS configurations of Chinook salmon (Anderson et al. 2018) and
steelhead (Pearse et al. 2019) support this point, as does a recent
expert workshop report (Ford et al. 2020) and the original coastwide
status review of Chinook salmon (Myers et al. 1998). Recovery plans for
Chinook salmon ESUs that contain populations with both spring-run and
fall-run fish also emphasize the importance of recovering populations
with both life-history strategies (Shared Strategy Development
Committee 2007; Dornbush 2013; Pearse et al. 2019).
While recognizing the importance of run-timing variation to species
and ESU viability, Myers et al. (1998) concluded that patterns of
genetic variation and patterns of variation for other life-history
traits indicated that coastal spring- and fall-run Chinook salmon
shared the same recent evolutionary history. Coastal ESUs were
identified based on concordant patterns of genetic, life-history, and
geographic variation, with run-timing variation considered to be an
important element of diversity within ESUs. Subsequent reports of Upper
Klamath Trinity River Chinook salmon and Northern California steelhead
have reached the same conclusion (Williams et al. 2013, Anderson et al.
2018, Pearse et al. 2019). Recent genetic studies have greatly
increased our knowledge of the genetic basis of run-timing variation,
but these studies do not change or invalidate the previous conclusion
that spring-run and fall-run Chinook salmon in the currently delineated
OC and SONCC Chinook salmon ESUs share a recent evolutionary legacy,
and they are, on the whole, more genetically similar to each other than
to populations in other ESUs. The two run types display similar
characteristics in other life-history traits, and are genetically
similar to each other due to a combination of recent common ancestry
and ongoing interbreeding. Identifying a spring-run-only Chinook salmon
ESU for either the OC or SONCC areas would therefore be inconsistent
with our ESU policy, both because of high levels of interbreeding
between spring-run and fall-run fish in these ESUs and because spring-
run fish, as a group, in these ESUs do not form a distinct evolutionary
lineage within the species.
Conclusions on the Evolutionarily Significant Unit Analysis
The Panel concluded, and the WCR concurred, that the best available
information indicates that OC and SONCC spring-run Chinook salmon
populations do not meet the reproductive isolation and genetic legacy
criteria of the ESU Policy. The spring-run phenotype and the spring-run
variant within the GREB1L chromosomal region are clearly an important
part of the diversity within the Chinook salmon species, but the
available data indicate that spring-run Chinook salmon in the OC and
SONCC ESUs regularly interbreed with and share a recent evolutionary
history throughout the vast majority of their genome with fall-run
Chinook salmon in the same rivers.
Final Determination
Section 4(b)(1) of the ESA requires that NMFS make listing
determinations based solely on the best scientific and commercial data
available after conducting a review of the status of the species and
taking into account those efforts, if any, being made by any state or
foreign nation, or political subdivisions thereof, to protect and
conserve the species. We have independently reviewed the best available
scientific and commercial information, including the information
provided in the petitions and public comments submitted on the 90-day
findings (85 FR 20476, April 13, 2020; 86 FR 14407, March 16, 2021),
the ESU configuration review report, and other published and
unpublished information, and have consulted with species experts and
individuals familiar with the OC and SONCC Chinook salmon ESUs.
Our determination set forth here is based on a synthesis and
integration of the foregoing information. Based on our consideration of
the best available scientific and commercial information, as summarized
here and in the ESU configuration report, we conclude that OC and SONCC
spring-run Chinook salmon populations do not constitute ESUs.
Accordingly, OC and SONCC spring-run Chinook salmon populations do not
meet the statutory definition of a species, and thus, OC and SONCC
spring-run Chinook salmon populations do not warrant listing under the
ESA.
This is a final action, and, therefore, we are not soliciting
public comments.
References
A complete list of all references cited herein is available upon
request (see FOR FURTHER INFORMATION CONTACT).
Authority
The authority for this action is the Endangered Species Act of
1973, as amended (16 U.S.C. 1531 et seq.).
Dated: August 6, 2021.
Samuel D. Rauch, III,
Deputy Assistant Administrator for Regulatory Programs, National Marine
Fisheries Service.
[FR Doc. 2021-17211 Filed 8-16-21; 8:45 am]
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