Clean Water Act Section 401 Certification Rule, 42210-42287 [2020-12081]
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Table of Contents
ENVIRONMENTAL PROTECTION
AGENCY
40 CFR Part 121
[EPA–HQ–OW–2019–0405; FRL–10009–80–
OW]
RIN 2040–AF86
Clean Water Act Section 401
Certification Rule
Environmental Protection
Agency (EPA).
ACTION: Final rule.
AGENCY:
The Environmental Protection
Agency (EPA) is publishing this final
rule to update and clarify the
substantive and procedural
requirements for water quality
certification under Clean Water Act
(CWA or the Act) section 401. CWA
section 401 is a direct grant of authority
to States (and Tribes that have been
approved for ‘‘treatment as a State’’
status) to review for compliance with
appropriate federal, State, and Tribal
water quality requirements any
discharge into a water of the United
States that may result from a proposed
activity that requires a federal license or
permit. This final rule is intended to
increase the predictability and
timeliness of CWA section 401
certification actions by clarifying
timeframes for certification, the scope of
certification review and conditions, and
related certification requirements and
procedures.
DATES: This rule is effective on
September 11, 2020.
ADDRESSES: The EPA has established a
docket for this action under Docket ID
No. EPA–HQ–OW–2019–0405, at
https://www.regulations.gov. All
documents in the docket are listed and
available at https://
www.regulations.gov. Although listed in
the index, some information is not
publicly available, e.g. Confidential
Business Information or other
information whose disclosure is
restricted by statute. Certain other
materials, such as copyrighted material,
is not placed on the internet and will be
publicly available only in hard copy
form. Publicly available docket
materials are available electronically
through https://www.regulations.gov.
FOR FURTHER INFORMATION CONTACT:
Lauren Kasparek, Oceans, Wetlands,
and Communities Division, Office of
Water (4504–T), Environmental
Protection Agency, 1200 Pennsylvania
Avenue NW, Washington, DC 20460;
telephone number: (202) 564–5700;
email address: cwa401@epa.gov.
SUPPLEMENTARY INFORMATION:
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SUMMARY:
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I. General Information
A. How can I get copies of this document
and related information?
B. What action is the Agency taking?
C. Under what legal authority is this final
rule issued?
II. Background
A. Executive Summary
B. Executive Order 13868: Promoting
Energy Infrastructure and Economic
Growth
C. Summary of Stakeholder Engagement
D. Guidance Document
E. Effect on Existing Federal, State, and
Tribal Laws
F. Legal Background
1. The Clean Water Act
2. The EPA’s Role in Implementing Section
401
3. The EPA’s 1971 Certification
Regulations
4. Judicial Interpretations of Section 401
5. Administrative Law Principles
6. Response to Comments on the Legal
Background
G. Legal Construct for the Final Rule
1. Scope of Certification
2. Timeline for Section 401 Certification
Analysis
III. Final Rule
A. When Section 401 Certification is
Required
B. Pre-filing Meeting Request
C. Certification Request/Receipt
D. Certification Actions
E. Appropriate Scope for Section 401
Certification Review
F. Timeframe for Certification Analysis and
Decision
G. Contents and Effects of Certification
H. Certification by the Administrator
I. Determination of Effect on Neighboring
Jurisdictions
J. The EPA’s Role in Review and Advice
K. Enforcement
L. Modifications
M. General Licenses and Permits
IV. Economic Analysis
V. Statutory and Executive Order Reviews
A. Executive Order 12866: Regulatory
Planning and Review; Executive Order
13563: Improving Regulation and
Regulatory Review
B. Executive Order 13771: Reducing
Regulation and Controlling Regulatory
Costs
C. Paperwork Reduction Act
D. Regulatory Flexibility Act
E. Unfunded Mandates Reform Act
F. Executive Order 13132: Federalism
G. Executive Order 13175: Consultation
and Coordination With Indian Tribal
Governments
H. Executive Order 13045: Protection of
Children From Environmental Health
and Safety Risks
I. Executive Order 13211: Actions
Concerning Regulations That
Significantly Affect Energy Supply,
Distribution, or Use
J. National Technology Transfer and
Advancement Act
K. Executive Order 12898: Federal Actions
To Address Environmental Justice in
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Minority Populations and Low-Income
Populations
L. Congressional Review Act
I. General Information
A. How can I get copies of this
document and related information?
1. Docket. An official public docket
for this action has been established
under Docket ID No. EPA–HQ–OW–
2019–0405. The official public docket
consists of the documents specifically
referenced in this action, and other
information related to this action. The
official public docket is the collection of
materials that is available for public
viewing at the OW Docket, EPA West,
Room 3334, 1301 Constitution Ave. NW,
Washington, DC 20004. This Docket
Facility is open from 8:30 a.m. to 4:30
p.m., Monday through Friday, excluding
legal holidays. The OW Docket
telephone number is 202–566–2426. A
reasonable fee will be charged for
copies.
2. Electronic Access. You may access
this Federal Register document
electronically under the ‘‘Federal
Register’’ listings at https://
www.regulations.gov. An electronic
version of the public docket is available
through the EPA’s electronic public
docket and comment system, the EPA
Dockets. You may access the EPA
Dockets at https://www.regulations.gov
to view submitted public comments,
access the index listing of the contents
of the official public docket, and access
those documents in the public docket
that are available electronically. For
additional information about the EPA’s
public docket, visit the EPA Docket
Center homepage at https://
www.epa.gov/epahome/dockets.htm.
Although not all docket materials may
be available electronically, you may still
access any of the publicly available
docket materials through the Docket
Facility.
B. What action is the Agency taking?
In this notice, the Agency is
publishing a final rule updating the
water quality certification regulations in
40 CFR 121.
C. Under what legal authority is this
final rule issued?
The authority for this action is the
Federal Water Pollution Control Act, 33
U.S.C. 1251 et seq., including sections
304(h), 401, and 501(a).
II. Background
A. Executive Summary
Congress enacted section 401 of the
CWA to provide States and authorized
Tribes with an important tool to help
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protect the water quality of federally
regulated waters within their borders in
collaboration with federal agencies.
Under section 401, a federal agency may
not issue a license or permit to conduct
any activity that may result in any
discharge into waters of the United
States,1 unless the State or authorized
Tribe where the discharge would
originate either issues a section 401
water quality certification finding
compliance with applicable water
quality requirements or certification is
waived. As described in greater detail
below, section 401 envisions a robust
State and Tribal role in the federal
licensing or permitting proceedings,
including those in which local authority
may otherwise be preempted by federal
law. Section 401 also places important
limitations on how that role may be
implemented to maintain an efficient
process, consistent with the overall
cooperative federalism construct
established by the CWA, as explained
below in section II.F.1 of this notice.
Section 401 provides that a State or
authorized Tribe must act on a section
401 certification request ‘‘within a
reasonable period of time (which shall
not exceed one year)’’.2 Section 401
does not guarantee a State or Tribe a full
year to act on a certification request, as
the statute only grants as much time as
is reasonable. 33 U.S.C. 1341(a)(1). The
CWA provides that the timeline for
action on a section 401 certification
begins ‘‘after receipt’’ of a certification
request. Id. If a State or Tribe does not
grant, grant with conditions, deny, or
expressly waive the section 401
certification within a reasonable time
period, section 401 states that the ‘‘the
certification requirements of this
subsection shall be waived with respect
to such Federal application.’’ Id. If the
certification requirement has been
waived and the federal license or permit
is issued, any subsequent action by a
State or Tribe to grant, grant with
1 The CWA, including section 401, uses
‘‘navigable waters,’’ defined as ‘‘waters of the
United States, including territorial seas.’’ 33 U.S.C.
1362(7). This final rule uses ‘‘waters of the United
States’’ throughout. In January 2020, the EPA
revised the definition of waters of the United States
and expects the final definition of the term to
control in all CWA contexts. See 85 FR 22250 (April
21, 2020).
2 In some circumstances, the EPA can act as the
certifying authority. See section III.H of this notice
for further discussion. ‘‘If the State, interstate
agency, or Administrator, as the case may be, fails
or refuses to act on a request for certification,
within a reasonable period of time (which shall not
exceed one year) after receipt of such request, the
certification requirements of this subsection shall
be waived with respect to such Federal
application.’’ 33 U.S.C. 1341(a)(1); see also Hoopa
Valley Tribe v. FERC, 913 F.3d 1099 (D.C. Cir.
2019).
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conditions, or deny section 401
certification has no legal force or effect.
Section 401 authorizes States and
Tribes to certify that a discharge into
waters of the United States that may
result from a proposed activity will
comply with certain enumerated
sections of the CWA, including the
effluent limitations and standards of
performance for new and existing
discharge sources (sections 301, 302,
and 306 of the CWA), water quality
standards and implementation plans
(section 303), and toxic pretreatment
effluent standards (section 307). When
granting a section 401 certification,
States and Tribes are directed by CWA
section 401(d) to include conditions,
including ‘‘effluent limitations and
other limitations, and monitoring
requirements’’ that are necessary to
assure that the applicant for a federal
license or permit will comply with
applicable provisions of CWA sections
301, 302, 306, and 307, and with ‘‘any
other appropriate requirement of State
law.’’
As the Agency charged with
administering the CWA,3 as well as a
certifying authority in certain instances,
the EPA is responsible for developing a
common regulatory framework for
certifying authorities to follow when
completing section 401 certifications.
See 33 U.S.C. 1251(d), 1361(a). In 1971,
the EPA promulgated regulations for
implementing the certification
provisions pursuant to section 21(b) of
the Federal Water Pollution Control Act
of 1948 (FWPCA), but the EPA has
never updated those regulations to
reflect the 1972 amendments to the
FWPCA (commonly known as the Clean
Water Act or CWA), which created
section 401, despite the fact that there
were changes to the relevant statutory
text. Since the 1972 CWA amendments,
the EPA issued two guidance
documents and participated as amicus
curiae in court cases concerning CWA
section 401, but the Agency has not
updated its regulations to comport with
the 1972 amendments and has not, to
date, established robust internal
procedures for implementing its roles
under section 401. Over the last several
years, litigation over the section 401
certifications for several high-profile
infrastructure projects have highlighted
the need for the EPA to update its
regulations to provide a common
framework for consistency with CWA
section 401 and to give project
proponents, certifying authorities, and
federal licensing and permitting
3 The EPA co-administers section 404 with the
Army Corps of Engineers (the Corps).
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agencies additional clarity and
regulatory certainty.
On April 10, 2019, the President
issued Executive Order 13868, entitled
Promoting Energy Infrastructure and
Economic Growth (the Executive Order
or Order), which directed the EPA to
engage with States, Tribes, and federal
agencies and update the Agency’s
outdated guidance and regulations,
including the 1971 certification
framework. Pursuant to the Executive
Order, on August 8, 2019, the EPA
signed the proposed rule ‘‘Updating
Regulations on Water Quality
Certifications,’’ and the proposal was
published on August 22, 2019. 84 FR
44080. The 60-day public comment
period for the proposal closed on
October 21, 2019. Consistent with
Executive Order 13868 and the 1972
CWA amendments, this final rule
provides an updated common
framework that is consistent with the
Act and which seeks to increase
predictability and timeliness.
The following sections provide an
overview of section 401, relevant court
cases, outreach, and other actions that
inform today’s rule, as well as provides
responses to salient comments received
on these topics.
B. Executive Order 13868: Promoting
Energy Infrastructure and Economic
Growth
The policy objective of the Executive
Order is to encourage greater investment
in energy infrastructure in the United
States by promoting efficient federal
licensing and permitting processes and
reducing regulatory uncertainty. The
Executive Order identified the EPA’s
outdated section 401 federal guidance
and regulations as one source of
confusion and uncertainty hindering the
development of energy infrastructure.
Several commenters on the proposed
rule argued that the EPA failed to
demonstrate that the rule would meet
the objectives of the Executive Order
and the CWA, and they maintained that
Presidential policy objectives cannot
override the CWA’s plain language and
Supreme Court jurisprudence. One
commenter stated that the EPA’s actions
under this Executive Order were driven
by political considerations and the
desire to undertake the rulemaking
process as expeditiously as possible to
meet the President’s purportedly
unlawful directions as stated in the
Executive Order.
Other commenters asserted that the
proposed rule is consistent with the
Executive Order. These commenters
appreciated the administration’s
recognition of the importance of energy
infrastructure projects; the
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administration’s recognition of the
economic impact the section 401
process has had on some important
energy infrastructure projects; and the
EPA’s review of the section 401 process.
Such commenters supported the
Executive Order’s goal of promoting
economic growth and supported the
proposed rule’s attempts to protect
interstate and foreign commerce from
unconstitutional discrimination and
unreasonable burdens and to clearly
define the steps and timing for section
401 certifications.
As discussed throughout this final
rule preamble, the Agency has
determined that the final rule
implements the fundamental statutory
objectives of the CWA, while also
complying with the Executive Order.
The Agency disagrees with commenters
who asserted that the rulemaking
process was inappropriately initiated or
inappropriately directed by the
Executive Order. As noted above, the
EPA’s 1971 certification regulations 4
(36 FR 22487, Nov. 25, 1971;
redesignated at 37 FR 21441, October
11, 1972; further redesignated at 44 FR
32899, June 7, 1979) had not been
updated since they were promulgated in
1971, pursuant to section 21(b) of the
FWPCA. Additionally, at the time the
Executive Order was issued, the EPA’s
only guidance to the public on section
401 implementation was an interim
handbook (now rescinded) entitled
Clean Water Act Section 401 Water
Quality Certification: A Water Quality
Protection Tool for States and Tribes
(‘‘Interim Handbook’’), which had not
been updated since its release in 2010
and therefore did not reflect the current
case law interpreting CWA section 401.
The Executive Order directed the EPA
to review CWA section 401 and the
EPA’s 1971 certification regulations and
interim guidance, issue new guidance to
States, Tribes, and federal agencies
within 60 days of the Order, and
propose (as appropriate and consistent
with law) new section 401 regulations
within 120 days of the Order. The
Executive Order also directed the EPA
to consult with States, Tribes, and
relevant federal agencies while
reviewing its existing guidance and
regulations to identify areas that would
benefit from greater clarity.
As part of this review, the Executive
Order directed the EPA to take into
4 These regulations were redesignated in 1972
and 1979 under the CWA, but no substantive
change to the regulatory text has been made since
1971 notwithstanding changes to the relevant
statutory text in the 1972 CWA. Therefore,
throughout this final rule preamble, the Agency
refers to these regulatory provisions as the ‘‘1971
certification regulations.’’
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account the federalism considerations
underlying section 401 and to consider
the appropriate scope of water quality
reviews and conditions, the scope of
information needed to act on a
certification request in a reasonable
period of time, and expectations for
reasonable certification review times.
Section 3.a. of Executive Order 13868,
Promoting Energy Infrastructure and
Economic Growth. Following the release
of the EPA’s new guidance document,
the Executive Order directed the EPA to
lead an interagency review of all
existing federal regulations and
guidance pertaining to section 401 to
ensure consistency with the EPA’s new
guidance and rulemaking efforts. The
Executive Order directs all federal
agencies to update their existing section
401 guidance within 90 days after
publication of the EPA’s new guidance.
Additionally, the Executive Order
directs other federal agencies to initiate
rulemaking, if necessary, within 90 days
of the completion of the EPA’s
rulemaking, to ensure that their own
CWA section 401 regulations are
consistent with the EPA’s new rules and
with the Executive Order’s policy goals.
Although the Executive Order focuses
on section 401’s impact on the energy
sector, section 401 applies broadly to
any proposed federally licensed or
permitted activity that may result in any
discharge into a water of the United
States. Therefore, updates to the EPA’s
1971 certification regulations and
guidance are relevant to all water
quality certifications, not just those
related to energy sector projects.
Additional information on the EPA’s
State and Tribal engagement is provided
in section II.C of this notice, and
additional information on the EPA’s
updated guidance document is provided
in section II.D of this notice.
C. Summary of Stakeholder Engagement
On June 11, 2018, the Agency
published its 2018 Spring Unified
Agenda of Regulatory and Deregulatory
Actions 5 announcing that the Agency
was considering, as a long-term action,
the issuance of a notice soliciting public
comment on whether the section 401
certification process would benefit from
a rulemaking to promote nationwide
consistency and regulatory certainty for
States, authorized Tribes, and
stakeholders. The Agency’s stakeholder
outreach and engagement efforts since
that announcement are summarized
below.
On August 6, 2018, the Agency sent
a letter to the Environmental Council of
5 Available at https://www.reginfo.gov/public/do/
eAgendaViewRule?pubId=201804&RIN=2040-AF86.
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the States, the Association of Clean
Water Administrators, the Association
of State Wetland Managers, the National
Tribal Water Council, and the National
Tribal Caucus identifying the Agency’s
interest in engaging in potential
clarifications to the section 401 process.
The Agency discussed section 401
during several association meetings and
calls and received correspondence from
several stakeholders between Fall 2018
and Spring 2019. Early stakeholder
feedback received prior to the issuance
of the Executive Order, the August 6,
2018 letter described above, and the
Agency’s presentations given between
Fall 2018 and Spring 2019, may be
found in the pre-proposal
recommendations docket (Docket ID No.
EPA–HQ–OW–2018–0855).
Following release of the Executive
Order, the EPA continued its effort to
engage with States and Tribes on how
to increase clarity in the section 401
certification process, including creating
a new website to provide information on
section 401 and notifying State
environmental commissioners and
Tribal environmental directors of a twopart webinar series for States and
Tribes. See www.epa.gov/cwa-401. The
first webinar was held on April 17,
2019, and discussed the Executive
Order and the EPA’s next steps, and
solicited feedback from States and
Tribes consistent with the Executive
Order. Shortly thereafter, the EPA
initiated formal consultation efforts
under Executive Order 13132 on
Federalism with States and Executive
Order 13175 on Consultation and
Coordination with Indian Tribal
Governments regarding provisions that
require clarification within section 401
of the CWA and related federal
regulations and guidance. The Agency
held an initial federalism consultation
meeting on April 23, 2019, and sent
notification of the consultation period to
States and Tribes on April 24, 2019.
Consultation ran through May 24, 2019,
and the EPA opened a docket for preproposal recommendations during this
time period (Docket ID No. EPA–HQ–
OW–2018–0855). On May 7, 2019, and
May 15, 2019, the EPA held Tribal
informational webinars, and on May 8,
2019, the EPA held an informational
webinar for both States and Tribes. See
sections V.F and V.G of this notice for
further details on the Agency’s
federalism and Tribal consultations.
Questions and recommendations from
the webinar attendees are available in
the pre-proposal docket (Docket ID No.
EPA–HQ–OW–2018–0855).
During the consultation period, the
EPA participated in phone calls and inperson meetings with inter-
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governmental and Tribal associations,
including the National Governors
Association and National Tribal Water
Council. The EPA also attended the EPA
Region 9 Regional Tribal Operations
Committee meeting on May 22, 2019, to
solicit recommendations for the
rulemaking effort. The EPA engaged
with federal agencies that issue licenses
or permits subject to section 401,
including the United States Department
of Agriculture, the Federal Energy
Regulatory Commission (FERC), the U.S.
Army Corps of Engineers (Corps), the
Alcohol and Tobacco Tax and Trade
Bureau, the Nuclear Regulatory
Commission, and the Bureau of
Reclamation through several meetings
and phone calls to gain additional
feedback from federal partners.
At the webinars and meetings, the
EPA provided a presentation and sought
input on aspects of section 401 and the
1971 certification regulations that may
benefit from clarification or require
updating, including timeframe, scope of
certification review, and coordination
among certifying authorities, federal
licensing or permitting agencies, and
project proponents. The EPA also
requested input on issues and process
improvements for the Agency’s
consideration. Participant
recommendations from webinars,
meetings, and the docket represent a
diverse range of interests, positions, and
suggestions. Several themes emerged
throughout this process, including
support for ongoing State and Tribal
engagement, support for retention of
State and Tribal authority, and
suggestions for process improvements
for CWA section 401 water quality
certifications. The EPA considered all of
this information and stakeholder input
during development of the proposed
rule, including all recommendations
submitted to the pre-proposal docket
and feedback received prior to the
initiation of, during, and after the formal
consultation period.
On August 8, 2019, the EPA signed
the proposed rule, ‘‘Updating
Regulations on Water Quality
Certifications,’’ and the proposal was
published on August 22, 2019. 84 FR
44080. The 60-day public comment
period for the proposal closed on
October 21, 2019. After signing the
proposed rule, the EPA conducted a
variety of stakeholder outreach
engagements on the contents of the
proposed rule. For example, on August
20, 2019, the EPA held a public webcast
to present key elements of the proposed
rule (see https://www.youtube.com/
watch?v=eBI7Mj5ucyM
&feature=youtu.be). The EPA also held
a public hearing in Salt Lake City, Utah,
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on September 5 and 6, 2019, to hear
feedback from individuals from
regulated industry sectors,
environmental and conservation
organizations, State agencies, Tribal
governments, and private citizens. The
EPA continued its engagement
throughout the public comment period
with States and Tribes through inperson meetings with representatives in
Salt Lake City, Utah, and Chicago,
Illinois. During these meetings, the
Agency provided an overview of the
proposed rule, responded to clarifying
questions from participants, discussed
implementation considerations, and
heard comments reflecting a range of
positions on the proposal and varying
interpretations of CWA section 401. A
transcript of the public hearing and
related materials and summaries of the
State and Tribal meetings can be found
in the docket for the final rule. At the
request of individual Tribes, the EPA
also held staff-level and leader-to-leader
meetings with those Tribes.
A few commenters commended the
EPA for its outreach efforts during the
rule development process. Other
commenters asserted that the EPA held
an abbreviated public engagement
process. Some commenters asserted that
the EPA’s consultation efforts with
States, Tribes and local governments
during the rulemaking process were
inadequate. The Agency disagrees with
commenters that its consultation with
States or Tribes was inadequate. As
discussed in section II.C, section V.F,
and section V.G of this notice, the
Agency consulted with States, Tribes,
and local governments throughout the
rulemaking process. See also the
Agency’s response to comments
document in the docket for this final
rule for further response on the
Agency’s outreach efforts.
In developing the final rule, the EPA
reviewed and considered more than
125,000 comments on the proposed rule
from a broad spectrum of interested
parties. Commenters provided a wide
range of feedback on various aspects of
the proposal, including the legal basis
for the proposed rule and the Agency’s
proposed definitions and certification
procedures. Commenters also explained
their views on how the proposal may
impact project proponents, certifying
authorities, and federal licensing and
permitting agencies. The Agency
summarizes the most salient public
comments received on the proposed
rule and provides responses in the
applicable sections of this final rule
preamble. A separate response to
comments document is also available in
the docket for the final rule at Docket ID
No. EPA–HQ–OW–2019–0405.
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D. Guidance Document
Pursuant to the Executive Order, the
Agency released updated section 401
guidance on June 7, 2019 (‘‘the 2019
Guidance’’), available at https://
www.epa.gov/cwa-401/clean-water-actsection-401-guidance-federal-agenciesstates-and-authorized-tribes. Coincident
with the release of the 2019 Guidance,
the EPA rescinded the 2010 Interim
Handbook on section 401 water quality
certification. The Interim Handbook had
not been updated or revised since its
release in 2010, had never been
finalized, and did not reflect current
case law interpreting CWA section 401.
The 2019 Guidance provided
information and recommendations for
implementing the substantive and
procedural requirements of section 401,
consistent with the areas of focus in the
Executive Order. More specifically, the
2019 Guidance focused on aspects of the
certification process, including the
timeline for review and decision-making
and the appropriate scope of review and
conditions. Additionally, the 2019
Guidance provided recommendations
for how federal licensing and permitting
agencies, States, and Tribes can better
coordinate to improve the section 401
certification process. The emphasis on
early coordination and collaboration to
increase process efficiency aligns with
other agency directives under Executive
Order 13807, Establishing Discipline
and Accountability in the
Environmental Review and Permitting
Process for Infrastructure Projects,
which established the ‘‘One Federal
Decision’’ policy. For major
infrastructure projects, Executive Order
13807 directs federal agencies to use a
single, coordinated process for
compliance with the National
Environmental Policy Act (NEPA), 42
U.S.C. 4321 et seq., and emphasizes
advance coordination to streamline
federal permitting actions.
Some commenters asserted the 2019
Guidance is inconsistent with 50 years
of practice and that it created confusion
and uncertainty. Other commenters
disagreed with the 2019 Guidance’s
limitations on timing of section 401
certifications and the scope of
information that States may require to
fully evaluate section 401 certification
requests. Several commenters stated that
the 2019 Guidance was inappropriately
issued prior to rulemaking and should
be withdrawn, and they asserted that
either the Interim Handbook should be
reinstated or the 2019 Guidance should
be modified. Some commenters
suggested that the issuance of the 2019
Guidance before rule finalization
indicates that the EPA has
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predetermined the outcome of the
rulemaking process, contrary to the
Administrative Procedure Act (APA),
and therefore that the guidance should
be rescinded or superseded by new
guidance consistent with the final rule.
The Agency disagrees with
commenters who asserted the 2019
Guidance was unnecessary. As
discussed above and as outlined in the
Executive Order, the Interim Handbook
created regulatory uncertainty and
confusion because it no longer reflected
the current case law interpreting CWA
section 401, nor had it been updated or
finalized. The 2019 Guidance was
intended only to facilitate consistent
implementation of section 401 and the
1971 certification regulations during
this rulemaking process, and the Agency
disagrees with commenters who
suggested the 2019 Guidance reflected a
predetermined outcome of this
rulemaking process. The 2019 Guidance
addressed the appropriate timeline for a
State’s or Tribe’s review and section 401
certification decision-making and the
appropriate scope of a State’s or Tribe’s
certification review and conditions
based on the EPA’s 1971 certification
regulations. The final rule, on the other
hand, is based on the Agency’s holistic
review of the 1972 statutory language,
addresses a number of additional topics,
and reflects and responds to public
comments.
Some commenters said the 2019
Guidance should be retained but
updated once the proposed rule is
finalized. Other commenters stated the
2019 Guidance should be withdrawn
once the proposed rule is finalized. One
commenter asserted that additional
guidance may be appropriate, but that
the need for guidance depends on the
degree of clarity in the final rule.
Coincident with issuing this final
rule, the EPA is rescinding the 2019
Guidance. The EPA continues to
support and encourage the extent of
coordination recommended in the 2019
Guidance, including recommendations
for project proponents, certifying
authorities, and federal licensing and
permitting authorities to engage in
substantive discussions as early as
possible, and for all parties to operate in
good faith throughout the certification
process. However, the EPA has
concluded that retaining the 2019
Guidance after issuing this final rule
could cause confusion. The Agency has
determined that the final rule provides
sufficient additional specificity and
clarity on the issues discussed in the
2019 Guidance to both meet the
expectations of the Executive Order and
render the 2019 Guidance unnecessary.
The EPA retains the option to develop
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new guidance to facilitate
implementation of this final rule should
the need arise.
E. Effect on Existing Federal, State, and
Tribal Laws
According to the Executive Order, the
EPA is to lead an interagency effort to
review and examine existing federal
guidance and regulations ‘‘for
consistency with EPA guidance and
rulemaking.’’ Section 3.d. of the
Executive Order provides that, within
90 days after the EPA issues its final
section 401 regulations, ‘‘if necessary,
the heads of each 401 implementing
Agency shall initiate a rulemaking to
ensure that their respective agencies’
regulations are consistent with’’ the
EPA’s final section 401 regulations and
‘‘the policies set forth in section 2 of
[the Executive Order].’’ Pursuant to the
Executive Order, the other federal
agencies that issue licenses or permits
subject to the certification requirements
of section 401 are expected to ensure
that any regulations governing their own
processing, disposition, and
enforcement of section 401 certifications
are consistent with the EPA’s final
regulations and the policies articulated
in section 2 of the Executive Order. The
EPA engaged with other section 401
implementing agencies before and after
the proposed rule was issued, and the
EPA considered federal agency feedback
in developing the proposal and this
final rule. This final rule preamble
includes suggested recommendations
for federal agencies as they update or
draft their section 401 implementing
regulations. For instance, section
III.F.2.a of this notice encourages federal
agencies to establish in their regulations
a minimum reasonable period of time
for State and Tribal action to provide
notice and regulatory certainty to
project proponents and certifying
authorities about applicable deadlines.
However, these are only
recommendations and the federal
agencies themselves must determine
how to update their own regulations to
ensure consistency with this final rule
and efficient administration of their
license and permit programs. For its
part, the EPA plans to review its
National Pollutant Discharge
Elimination System (NPDES)
regulations to ensure its own permitting
program certification regulations are
consistent with this final rule.
In addition to conforming changes
that federal agencies may make to
federal regulations that implement
section 401, it is likely that States and
Tribes will want to evaluate their
existing certification statutes or
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regulations to ensure consistency with
the EPA’s final rule.
Certain commenters stated that the
proposed rule would not be consistent
with existing State law, such as State
statutes or regulations regarding notice
and comment, completeness, impact
and degradation avoidance, and
mitigation. Many of these commenters
were particularly concerned that
existing State-enacted procedures
require more information and time for
State certification review and action
than provided by the proposed rule. A
few commenters challenged the EPA’s
authority to dictate State procedures
and stated that the EPA should provide
flexibility for State regulatory
procedures in this rulemaking. Several
commenters maintained that the
proposed rule would require statutory
and regulatory changes on the State
level and encouraged the EPA to give
States sufficient time to adapt by
providing an extended effective date for
the new rule. One commenter asserted
that if States were not provided
additional time to assess the new rule’s
impact on their State laws and
regulations, the new rule could require
the States to either violate their own
laws or deny more section 401
certifications, which could result in
litigation and further delay for projects
subject to section 401.
Several commenters asserted that the
proposed rule would make State and
Tribal section 401 programs less
efficient and would lead to national
inconsistency. Several commenters
asserted that the EPA’s interpretation of
the CWA and case law will result in
legal challenges to the final rule, which
would in turn lead to confusion and
delays in its implementation contrary to
the intent of the Executive Order.
Several commenters also indicated that
because States may need to change their
statutes and regulations in response to
the final rule, litigation will ensue over
those State changes resulting in further
regulatory uncertainty, defeating the
intent of the proposal to make the
section 401 process more efficient.
The EPA has considered and
appreciates the concerns raised by these
commenters and is mindful that the lack
of clear federal guidance and
implementation of CWA section 401
following enactment of the 1972 CWA
amendments has resulted in a
patchwork of State and Tribal programs
with different timing, request, and
review requirements for water quality
certifications. However, the EPA’s
decades-long delay in promulgating
section 401 implementing regulations
does not undercut the EPA’s authority
and obligation to promulgate
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implementing regulations for this
important CWA program. The EPA’s
delay in promulgating regulations also
does not change the 1972 CWA
amendment’s statutory language or
underlying congressional intent, nor
does it allow for States or Tribes to
implement water quality certification
programs that exceed the authority
granted by Congress.
The EPA acknowledges that some
States and Tribes may update their
regulations to be consistent with the
procedural and substantive elements of
this final rule. Regulatory consistency
across federal, State, and Tribal
governments with respect to issues like
timing, waiver, and scope of section 401
reviews and conditions would help
ensure that section 401 is implemented
nationally in an efficient, effective, and
transparent manner. Although such
updates may have an initial burden on
certifying authorities, they will
ultimately result in more efficient
certification and federal permitting
processes. The Agency will face a
similar task in updating its own NPDES
regulations after this final rule is
published, but will similarly benefit
from more efficient, effective and
transparent certification processes
under updated regulations. Making the
rule effective 30 days after publication
in the Federal Register would be
consistent with applicable law;
however, the Agency is establishing the
effective date 60 days after publication
of the final rule in the Federal Register.
This additional time will allow EPA to
develop implementation materials for
States, Tribes and federal agencies, as
necessary or appropriate. The Agency
stands ready to provide technical
assistance to States, Tribes, and federal
agencies seeking to update their
certification procedures, guidance or
regulations.
By promulgating these long-overdue
regulations, it is not the EPA’s intent
that States or Tribes violate either
federal, State, or Tribal law pending
completion of updates to applicable
State or Tribal law. The Agency is aware
that most if not all States have
emergency rulemaking authorities that
may help avoid such outcomes.
Furthermore, as States and Tribes enact
conforming changes to their existing
laws, pursuant to section 401(b), the
EPA remains ready and willing to
provide any necessary technical
assistance.
A few commenters supporting the
proposed rule acknowledged the EPA’s
desire to preserve State sovereignty and
principles of cooperative federalism
while at the same time creating greater
national consistency in both federal and
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State regulations implementing section
401. One commenter observed that the
proposed rule would make the
regulations consistent with the intent of
the 1972 CWA amendments while
allowing the States to retain their
primary roles in the section 401 water
quality certification process. Some
commenters stated the current
regulations have allowed States to
impose conditions beyond the
appropriate scope set forth in the
statute, leading to lengthy delays in the
certification process and resulting in a
certification process that is ill-defined,
confusing in scope, and lacking clear
deadlines. A number of commenters
asserted that the proposed rule would
promote regulatory certainty, help
streamline the federal permitting
process for critical infrastructure
development, enhance the ability of
project proponents to plan for
construction, and facilitate early and
constructive engagement between
project proponents, States or authorized
Tribes, and federal agencies to ensure
that proposed projects will be protective
of local water quality.
The EPA acknowledges that although
many certifications reflect an
appropriately limited interpretation of
the purpose and scope of section 401
and are issued without controversy,
some certifying authorities have
implemented water quality certification
programs that exceed the boundaries set
by Congress in section 401. After
considering all of the comments
received, the Agency has made several
changes, described further below, to
provide greater clarity and regulatory
certainty in the final rule.
F. Legal Background
This final rule concludes the EPA’s
first comprehensive effort to promulgate
federal rules governing the
implementation of CWA section 401.
The Agency’s 1971 water quality
certification regulations pre-dated the
1972 CWA amendments. This final rule
therefore provides the EPA’s first
holistic analysis of the statutory text,
legislative history,6 and relevant case
law informing the implementation of
the CWA section 401 program by the
Agency and its federal, State, and Tribal
partners. The final rule, while focused
on the relevant statutory provisions and
case law interpreting those provisions,
is informed by the Agency’s expertise
developed over nearly 50 years of
6 The EPA observes that some legislative history
related to section 401 is internally inconsistent.
When interpreting section 401 for purposes of this
rulemaking, the Agency has generally accorded
such inconsistent and ambiguous legislative history
less weight.
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implementing the CWA and policy
considerations where necessary to
address certain ambiguities in the
statutory text. The following sections
describe the basic operational construct
and history of the 1972 CWA
amendments, how section 401 fits
within that construct, and certain core
administrative and legal principles that
provide the foundation for this final
rule.
1. The Clean Water Act
Congress amended the CWA 7 in 1972
to address longstanding concerns
regarding the quality of the nation’s
waters and the federal government’s
ability to address those concerns under
existing law. Prior to 1972,
responsibility for controlling and
redressing water pollution in the
nation’s waters largely fell to the Corps
under the Rivers and Harbors Act of
1899 (RHA). While much of that statute
focused on restricting obstructions to
navigation on the nation’s major
waterways, section 13 of the RHA made
it unlawful to discharge refuse ‘‘into any
navigable water of the United States, or
into any tributary of any navigable water
from which the same shall float or be
washed into such navigable water.’’ 8 33
U.S.C. 407. Congress had also enacted
the Water Pollution Control Act of 1948,
Public Law 80–845, 62 Stat. 1155 (June
30, 1948), to address interstate water
pollution, and subsequently amended
that statute in 1956 (giving the statute
its current formal name), in 1961, and
in 1965. The early versions of the CWA
promoted the development of pollution
abatement programs, required States to
develop water quality standards, and
authorized the federal government to
bring enforcement actions to abate water
pollution.
These earlier statutory frameworks,
however, proved challenging for
regulators, who often worked backwards
from an overly-polluted waterway to
determine which dischargers and which
sources of pollution may be responsible.
See EPA v. State Water Resources
Control Bd., 426 U.S. 200, 204 (1976). In
fact, Congress determined that the prior
7 The FWPCA has been commonly referred to as
the CWA following the 1977 amendments to the
FWPCA. Public Law 95–217, 91 Stat. 1566 (1977).
For ease of reference, the Agency will generally
refer to the FWPCA in this notice as the CWA or
the Act.
8 The term ‘‘navigable water of the United States’’
is a term of art used to refer to a water subject to
federal jurisdiction under the RHA. See, e.g., 33
CFR 329.1. The term is not synonymous with the
phrase ‘‘waters of the United States’’ under the
CWA, see id., and the general term ‘‘navigable
waters’’ has different meanings depending on the
context of the statute in which it is used. See, e.g.,
PPL Montana, LLC v. Montana, 132 S. Ct. 1215,
1228 (2012).
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statutes were inadequate to address the
decline in the quality of the nation’s
waters, see City of Milwaukee v. Illinois,
451 U.S. 304, 310 (1981), so Congress
performed a ‘‘total restructuring’’ and
‘‘complete rewriting’’ of the existing
statutory framework of the Act in 1972,
id. at 317 (quoting legislative history of
1972 amendments). That restructuring
resulted in the enactment of a
comprehensive scheme designed to
prevent, reduce, and eliminate pollution
in the nation’s waters generally, and to
regulate the discharge of pollutants into
waters of the United States specifically.
See, e.g., S.D. Warren Co. v. Maine Bd.
of Envtl. Prot., 547 U.S. 370, 385 (2006)
(‘‘[T]he Act does not stop at controlling
the ‘addition of pollutants,’ but deals
with ‘pollution’ generally[.]’’).
The objective of the new statutory
scheme was ‘‘to restore and maintain
the chemical, physical, and biological
integrity of the Nation’s waters.’’ 33
U.S.C. 1251(a). In order to meet that
objective, Congress declared two
national goals: (1) ‘‘that the discharge of
pollutants into the navigable waters be
eliminated by 1985;’’ and (2) ‘‘that
wherever attainable, an interim goal of
water quality which provides for the
protection and propagation of fish,
shellfish, and wildlife and provides for
recreation in and on the water be
achieved by July 1, 1983 . . . .’’ Id. at
1251(a)(1)–(2).
Congress established several key
policies that direct the work of the
Agency to effectuate those goals. For
example, Congress declared as a
national policy ‘‘that the discharge of
toxic pollutants in toxic amounts be
prohibited; . . . that Federal financial
assistance be provided to construct
publicly owned waste treatment works;
. . . that areawide waste treatment
management planning processes be
developed and implemented to assure
adequate control of sources of pollutants
in each State; . . . [and] that programs
for the control of nonpoint sources of
pollution be developed and
implemented in an expeditious manner
so as to enable the goals of this Act to
be met through the control of both point
and nonpoint sources of pollution.’’ Id.
at 1251(a)(3)–(7).
Congress provided a major role for the
States in implementing the CWA,
balancing the traditional power of States
to regulate land and water resources
within their borders with the need for
a national water quality regulation. For
example, the statute highlighted ‘‘the
policy of the Congress to recognize,
preserve, and protect the primary
responsibilities and rights of States to
prevent, reduce, and eliminate
pollution’’ and ‘‘to plan the
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development and use . . . of land and
water resources . . . .’’ Id. at 1251(b).
Congress also declared as a national
policy that States manage the major
construction grant program and
implement the core permitting programs
authorized by the statute, among other
responsibilities. Id. Congress added that
‘‘[e]xcept as expressly provided in this
Act, nothing in this Act shall . . . be
construed as impairing or in any
manner affecting any right or
jurisdiction of the States with respect to
the waters (including boundary waters)
of such States.’’ Id. at 1370.9 Congress
also pledged to provide technical
support and financial aid to the States
‘‘in connection with the prevention,
reduction, and elimination of
pollution.’’ Id. at 1251(b).
To carry out these policies, Congress
broadly defined ‘‘pollution’’ to mean
‘‘the man-made or man-induced
alteration of the chemical, physical,
biological, and radiological integrity of
water,’’ id. at 1362(19), to parallel the
broad objective of the Act ‘‘to restore
and maintain the chemical, physical,
and biological integrity of the Nation’s
waters.’’ Id. at 1251(a). Congress then
crafted a non-regulatory statutory
framework to provide technical and
financial assistance to the States to
prevent, reduce, and eliminate pollution
in the nation’s waters generally. See,
e.g., id. at 1256(a) (authorizing the EPA
to issue ‘‘grants to States and to
interstate agencies to assist them in
administering programs for the
prevention, reduction, and elimination
of pollution’’); see also 84 FR 56626,
56632 (Oct. 22, 2019) (discussing nonregulatory program provisions); 85 FR
22250, 22253 (April 21, 2020) (same).
In addition to the Act’s non-regulatory
measures to control pollution of the
nation’s waters, Congress created a
federal regulatory program designed to
address the discharge of pollutants into
a subset of those waters identified as
‘‘the waters of the United States.’’ See
33 U.S.C. 1362(7). Section 301 contains
the key regulatory mechanism: ‘‘Except
as in compliance with this section and
sections 302, 306, 307, 318, 402, and
404 of this Act, the discharge of any
pollutant by any person shall be
unlawful.’’ Id. at 1311(a). A ‘‘discharge
of a pollutant’’ is defined to include
‘‘any addition of any pollutant to
navigable waters from any point
source,’’ such as a pipe, ditch or other
‘‘discernible, confined and discrete
conveyance.’’ Id. at 1362(12), (14). The
9 33 U.S.C. 1370 also prohibits states with EPAapproved CWA programs from adopting any
limitations, prohibitions, or standards that are less
stringent than required by the CWA.
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term ‘‘pollutant’’ means ‘‘dredged spoil,
solid waste, incinerator residue, sewage,
garbage, sewage sludge, munitions,
chemical wastes, biological materials,
radioactive materials, heat, wrecked or
discarded equipment, rock, sand, cellar
dirt and industrial, municipal, and
agricultural waste discharged into
water.’’ Id. at 1362(6). Thus, it is
unlawful to discharge pollutants into
waters of the United States from a point
source unless the discharge is in
compliance with certain enumerated
sections of the CWA, including by
obtaining authorizations pursuant to the
section 402 NPDES permit program or
the section 404 dredged or fill material
permit program. See id. at 1342, 1344.
Congress therefore intended to achieve
the Act’s objective ‘‘to restore and
maintain the chemical, physical, and
biological integrity of the Nation’s
waters’’ by addressing pollution of all
waters via non-regulatory means and
federally regulating the discharge of
pollutants to the subset of waters
identified as ‘‘navigable waters.’’ 10
Within the regulatory programs
established by the Act, two principal
components focus on ‘‘achieving
maximum ‘effluent limitations’ on
‘point sources,’ as well as achieving
acceptable water quality standards,’’
and the development of the NPDES
permitting program that imposes
specific discharge limitations for
regulated entities. EPA v. State Water
Resources Control Bd., 426 U.S. at 204.
Together these components provide a
framework for the Agency to focus on
10 Fundamental principles of statutory
interpretation support the Agency’s recognition of
a distinction between ‘‘nation’s waters’’ and
‘‘navigable waters.’’ As the Supreme Court has
observed, ‘‘[w]e assume that Congress used two
terms because it intended each term to have a
particular, nonsuperfluous meaning.’’ Bailey v.
United States, 516 U.S. 137, 146 (1995) (recognizing
the canon of statutory construction against
superfluity). Further, ‘‘the words of a statute must
be read in their context and with a view to their
place in the overall statutory scheme.’’ FDA v.
Brown & Williamson Tobacco Corp., 529 U.S. 120,
133 (2000) (internal quotation marks and citation
omitted); see also United Savings Ass’n v. Timbers
of Inwood Forest Associates, 484 U.S. 365, 371
(‘‘Statutory construction . . . is a holistic endeavor.
A provision that may seem ambiguous in isolation
is often clarified by the remainder of the statutory
scheme—because the same terminology is used
elsewhere in a context that makes its meaning
clear[.]’’) (citation omitted). The non-regulatory
sections of the CWA reveal Congress’ intent to
restore and maintain the integrity of the nation’s
waters using federal assistance to support state and
local partnerships to control pollution in the
nation’s waters in addition to a federal regulatory
prohibition on the discharge of pollutants into the
navigable waters. If Congress intended the terms to
be synonymous, it would have used identical
terminology. Instead, Congress chose to use
separate terms, and the Agency is instructed by the
Supreme Court to presume Congress did so
intentionally. For further discussion, see 84 FR at
56632 and 85 FR at 22253.
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reducing or eliminating discharges
while creating accountability for each
regulated entity that discharges into a
waterbody, facilitating greater
enforcement and overall achievement of
the CWA water quality goals. Id.; see
Oregon Natural Desert Association v.
Dombeck, 172 F.3d 1092, 1096 (9th Cir.
1998) (observing that 1972 amendments
‘‘largely supplanted’’ earlier versions of
CWA ‘‘by replacing water quality
standards with point source effluent
limitations’’).
Under this statutory scheme, the
States 11 are authorized to assume
program authority for issuing section
402 and 404 permits within their
borders, subject to certain limitations.
33 U.S.C. 1342(b), 1344(g). States are
also responsible for developing water
quality standards for ‘‘waters of the
United States’’ within their borders and
reporting on the condition of those
waters to the EPA every two years. Id.
at 1313, 1315. States must develop total
maximum daily loads (TMDLs) for
waters that are not meeting established
CWA water quality standards and must
submit those TMDLs to the EPA for
approval. Id. at 1313(d). And, central to
this final rule, States under CWA
section 401 have authority to grant,
grant with conditions, deny, or waive
water quality certifications for every
federal license or permit issued within
their borders that may result in a
discharge into waters of the United
States. Id. at 1341. These same
regulatory authorities can be assumed
by Indian Tribes under section 518 of
the CWA, which authorizes the EPA to
treat eligible Tribes with reservations in
a similar manner to States (referred to as
‘‘treatment as States’’ or TAS) for a
variety of purposes, including
administering the principal CWA
regulatory programs. Id. at 1377(e). In
addition, States and Tribes retain
authority to protect and manage the use
of those waters that are not waters of the
United States under the CWA. See, e.g.,
id. at 1251(b), 1251(g), 1370, 1377(a).
In enacting section 401, Congress
recognized that where States and Tribes
do not have direct permitting authority
(because they do not have section 402
or 404 program authorization or where
Congress has preempted a regulatory
field, e.g., under the Federal Power Act),
they may still play a valuable role in
protecting the water quality of federally
regulated waters within their borders in
collaboration with federal agencies.
11 The CWA defines ‘‘state’’ as ‘‘a State, the
District of Columbia, the Commonwealth of Puerto
Rico, the Virgin Islands, Guam, American Samoa,
the Commonwealth of the Northern Mariana
Islands, and the Trust Territory of the Pacific
Islands.’’ 33 U.S.C. 1362(3).
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Under section 401, a federal agency may
not issue a license or permit for an
activity that may result in a discharge
into waters of the United States, unless
the appropriate authority provides a
section 401 certification or waives its
ability to do so. The authority to certify
a federal license or permit lies with the
agency (the certifying authority) that has
jurisdiction over the location of the
discharge to the receiving water of the
United States. Id. at 1341(a)(1).
Examples of federal licenses or permits
potentially subject to section 401
certification include, but are not limited
to, CWA section 402 NPDES permits in
States where the EPA administers the
permitting program; CWA section 404
and RHA sections 9 and 10 permits
issued by the Corps; bridge permits
issued by the U.S. Coast Guard (USCG);
and hydropower and pipeline licenses
issued by the Federal Energy Regulatory
Commission (FERC).
Under section 401, a certifying
authority may grant, grant with
conditions, deny, or waive certification
in response to a request from a project
proponent. The certifying authority
determines whether the potential
discharge from the proposed activity
will comply with the applicable
provisions of sections 301, 302, 303,
306, and 307 of the CWA and any other
appropriate requirement of state law. Id.
Certifying authorities may also add to a
certification ‘‘any effluent limitations
and other limitations, and monitoring
requirements’’ necessary to assure
compliance. Id. at 1341(d). These
additional provisions must become
conditions of the federal license or
permit should it be issued. Id. A
certifying authority may deny
certification if it is unable to determine
that the discharge from the proposed
activity will comply with the applicable
sections of the CWA and appropriate
requirements of state law. If a certifying
authority denies certification, the
federal license or permit may not be
issued. Id. at 1341(a)(1). A certifying
authority may waive certification by
‘‘fail[ing] or refus[ing] to act on a request
for certification, within a reasonable
period of time (which shall not exceed
one year) after receipt of such request.’’
Id.
With the exception of section 401, the
EPA has promulgated regulatory
programs designed to ensure that the
CWA is implemented as Congress
intended in the 1972 CWA.12 This
includes pursuing the overall
12 As noted in section II.F.3 of this notice, the
EPA’s 1971 certification regulations were
promulgated prior to the 1972 CWA Amendments
and had not been updated to reflect the current
statutory text until this final rule was developed.
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‘‘objective’’ of the CWA to ‘‘restore and
maintain the chemical, physical, and
biological integrity of the Nation’s
waters,’’ id. at 1251(a), while
implementing the specific ‘‘policy’’
directives from Congress to, among
other things, ‘‘recognize, preserve, and
protect the primary responsibilities and
rights of States to prevent, reduce, and
eliminate pollution’’ and ‘‘to plan the
development and use . . . of land and
water resources.’’ Id. at 1251(b); see also
Webster’s II, New Riverside University
Dictionary (1994) (defining ‘‘policy’’ as
a ‘‘plan or course of action, as of a
government[,] designed to influence and
determine decisions and actions;’’ an
‘‘objective’’ is ‘‘something worked
toward or aspired to: Goal’’). The
Agency therefore recognizes a
distinction between the specific word
choices of Congress, which reflect the
need to develop regulatory programs
that aim to accomplish the goals of the
Act while implementing the specific
policy directives of Congress. For
further discussion of these principles,
see 84 FR 56638–39 and 85 FR at
22269–70.
Congress’ authority to regulate
navigable waters, including waters
subject to CWA section 401 water
quality certification, derives from its
power to regulate the ‘‘channels of
interstate commerce’’ under the
Commerce Clause. Gibbons v. Ogden, 22
U.S. (9 Wheat.) 1 (1824); see also United
States v. Lopez, 514 U.S. 549, 558–59
(1995) (describing the ‘‘channels of
interstate commerce’’ as one of three
areas of congressional authority under
the Commerce Clause). The Supreme
Court explained in Solid Waste Agency
of Northern Cook County v. U.S. Army
Corps of Engineers (SWANCC) that the
term ‘‘navigable’’ indicates ‘‘what
Congress had in mind as its authority
for enacting the Clean Water Act: Its
traditional jurisdiction over waters that
were or had been navigable in fact or
which could reasonably be so made.’’
531 U.S. 159, 172 (2001). The Court
further explained that nothing in the
legislative history of the Act provides
any indication that ‘‘Congress intended
to exert anything more than its
commerce power over navigation.’’ Id.
at 168 n.3. The Supreme Court,
however, has recognized that Congress
intended ‘‘to exercise its powers under
the Commerce Clause to regulate at least
some waters that would not be deemed
‘navigable’ under the classical
understanding of that term.’’ United
States v. Riverside Bayview Homes, 474
U.S. 121, 133 (1985); see also SWANCC,
531 U.S. at 167.
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The classical understanding of the
term navigable was first articulated by
the Supreme Court in The Daniel Ball:
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Those rivers must be regarded as public
navigable rivers in law which are navigable
in fact. And they are navigable in fact when
they are used, or are susceptible of being
used, in their ordinary condition, as
highways of commerce, over which trade and
travel are or may be conducted in the
customary modes of trade and travel on
water. And they constitute navigable waters
of the United States within the meaning of
the Acts of Congress, in contradistinction
from the navigable waters of the States, when
they form in their ordinary condition by
themselves, or by uniting with other waters,
a continued highway over which commerce
is or may be carried on with other States or
foreign countries in the customary modes in
which such commerce is conducted by water.
77 U.S. (10 Wall.) 557, 563 (1871).
Over the years, this traditional test has
been expanded to include waters that
had been used in the past for interstate
commerce, see Economy Light & Power
Co. v. United States, 256 U.S. 113, 123
(1921), and waters that are susceptible
for use with reasonable improvement,
see United States v. Appalachian Elec.
Power Co., 311 U.S. 377, 407–10 (1940).
By the time the 1972 CWA
amendments were enacted, the Supreme
Court had held that Congress’ authority
over the channels of interstate
commerce was not limited to regulation
of the channels themselves but could
extend to activities necessary to protect
the channels. See Oklahoma ex rel.
Phillips v. Guy F. Atkinson Co., 313 U.S.
508, 523 (1941) (‘‘Congress may exercise
its control over the non-navigable
stretches of a river in order to preserve
or promote commerce on the navigable
portions.’’). The Supreme Court also had
clarified that Congress could regulate
waterways that formed a part of a
channel of interstate commerce, even if
they are not themselves navigable or do
not cross State boundaries. See Utah v.
United States, 403 U.S. 9, 11 (1971).
Congress therefore intended to assert
federal regulatory authority over more
than just waters traditionally
understood as navigable, while rooting
that authority in ‘‘its commerce power
over navigation.’’ SWANCC, 531 U.S. at
168 n.3.
The EPA recognizes and respects the
primary responsibilities and rights of
States to regulate their land and water
resources, as reflected in CWA section
101(b). 33 U.S.C. 1251(b), see also id. at
1370. The oft-quoted objective of the
CWA to ‘‘restore and maintain the
chemical, physical, and biological
integrity of the Nation’s waters,’’ id. at
1251(a), must be implemented in a
manner consistent with Congress’ policy
directives. The Supreme Court long ago
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recognized the distinction between
waters subject to federal authority,
traditionally understood as navigable,
and those waters ‘‘subject to the control
of the States.’’ The Daniel Ball, 77 U.S.
(10 Wall.) 557, 564–65 (1870). Over a
century later, the Supreme Court in
SWANCC reaffirmed the States’
‘‘traditional and primary power over
land and water use.’’ 531 U.S. at 174.
Ensuring that States retain authority
over their land and water resources
helps carry out the overall objective of
the CWA and ensures that the Agency
is giving full effect and consideration to
the entire structure and function of the
Act. See, e.g., Hibbs v. Winn, 542 U.S.
88, 101 (2004) (‘‘A statute should be
construed so that effect is given to all its
provisions, so that no part will be
inoperative or superfluous, void or
insignificant.’’) (citation omitted); see
also Rapanos v. United States, 547 U.S.
715, 755–56 (2006) (Scalia, J., plurality)
(‘‘[C]lean water is not the only purpose
of the statute. So is the preservation of
primary state responsibility for ordinary
land-use decisions. 33 U.S.C. 1251(b).’’)
(original emphasis).
In summary, Congress relied on its
authority under the Commerce Clause
when it enacted the CWA and intended
to assert federal authority over more
than just waters traditionally
understood as navigable, but it limited
the exercise of that authority to ‘‘its
commerce power over navigation.’’
SWANCC, 531 U.S. at 168 n.3. The
Court in SWANCC found that ‘‘[r]ather
than expressing a desire to readjust the
federal-state balance [in a manner that
would result in a significant
impingement of the States’ traditional
and primary power over land and water
use], Congress chose [in the CWA] to
‘recognize, preserve, and protect the
primary responsibilities and rights of
States . . . to plan the development and
use . . . of land and water resources
. . .’’ Id. at 174 (quoting 33 U.S.C.
1251(b)). The Court found no clear
statement from Congress that it had
intended to permit federal
encroachment on traditional State
power and construed the CWA to avoid
the significant constitutional questions
related to the scope of federal authority
authorized therein. Id. at 173–74. That
is because the Supreme Court has
instructed that ‘‘[w]here an
administrative interpretation of a statute
invokes the outer limits of Congress’
power, we expect a clear indication that
Congress intended that result.’’ Id. at
172. The Court has further stated that
this is particularly true ‘‘where the
administrative interpretation alters the
federal-state framework by permitting
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federal encroachment upon a traditional
state power.’’ Id. at 173; see also Will v.
Michigan Dept. of State Police, 491 U.S.
58, 65 (1989) (‘‘[I]f Congress intends to
alter the ‘usual constitutional balance
between the States and the Federal
Government,’ it must make its intention
to do so ‘unmistakably clear in the
language of the statute.’ ’’) (quoting
Atascadero State Hospital v. Scanlon,
473 U.S. 234, 242 (1985)); Gregory v.
Ashcroft, 501 U.S. 452, 461 (1991)
(‘‘[The] plain statement rule . . .
acknowledg[es] that the States retain
substantial sovereign powers under our
constitutional scheme, powers with
which Congress does not readily
interfere’’). This means that the
executive branch’s authority under the
CWA, while broad, is not unlimited,
and the waters to which CWA
regulatory programs apply must
necessarily respect those limits. For
further discussion of these principles,
see 84 FR 56655 and 85 FR at 22264.
See section II.F.6 of this final rule
preamble for a summary of public
comments and Agency responses on
interstate commerce.
In some cases, CWA section 401
denials have been challenged on
grounds that the denial improperly
interfered with interstate commerce.
See, e.g., Lighthouse Resources, Inc. v.
Inslee, No. 3:18–cv–5005, Complaint at
¶¶ 206–210; ¶¶ 224–248 (W.D. Wash.
filed Jan. 8, 2018) (alleging that State’s
denial of section 401 certification
violated dormant Commerce Clause and
dormant foreign Commerce Clause). In
Lake Carriers Association v. EPA, 652
F.3d 1 (D.C. Cir. 2011), the court of
appeals found that the section 401
statutory scheme of delegation of
authority to States, by itself, does not
create an impermissible burden on
interstate commerce; however, the court
signaled that certain actions taken by
States pursuant to section 401 could be
subject to dormant Commerce Clause
challenges. 652 F.3d at 10 (‘‘If
[petitioners] believe that the
certification conditions imposed by any
particular state pose an inordinate
burden on their operations, they may
challenge those conditions in that state’s
courts. If [petitioners] believe that a
particular state’s law imposes an
unconstitutional burden on interstate
commerce, they may challenge that law
in federal (or state) court.’’).
2. The EPA’s Role in Implementing
Section 401
The EPA, as the federal agency
charged with administering the CWA, is
responsible for developing regulations
and guidance to ensure effective
implementation of all CWA programs,
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including section 401.13 In addition to
administering the statute and
promulgating implementing regulations,
the Agency has several other roles under
section 401.
The EPA acts as the section 401
certification authority under two
circumstances. First, the EPA will
certify on behalf of a State or Tribe
where the jurisdiction in which the
discharge will originate does not itself
have certification authority. 33 U.S.C.
1341(a)(1). In practice, this results in the
EPA certifying on behalf of the many
Tribes that do not have TAS authority
for section 401. Second, the EPA will
act as the certifying authority where the
discharge would originate on lands of
exclusive federal jurisdiction.14
The EPA also notifies neighboring
jurisdictions when the Administrator
determines that a discharge may affect
the quality of such jurisdictions’ waters.
Id. at 1341(a)(2). Although section 401
certification authority lies with the
jurisdiction where the discharge
originates, a neighboring jurisdiction
whose water quality is potentially
affected by the discharge may have an
opportunity to raise objections to a
certification issued for a federal license
or permit. Where the EPA Administrator
determines that a discharge subject to
section 401 ‘‘may affect’’ the water
quality of a neighboring jurisdiction, the
EPA is required to notify that other
jurisdiction. Id. If the neighboring
jurisdiction determines that the
discharge ‘‘will affect’’ the quality of its
waters in violation of a water quality
requirement of that jurisdiction, it may
notify the EPA and the federal licensing
or permitting agency of its objection to
the license or permit. Id. It may also
request a hearing on its objection with
the federal licensing or permitting
agency. At such a hearing, section 401
13 See 33 U.S.C. 1251(d) (‘‘Except as otherwise
expressly provided in this chapter, the
Administrator of the Environmental Protection
Agency . . . shall administer this chapter.’’); id. at
1361(a); Mayo Found. for Medical Educ. and Res.
v. United States, 562 U.S. 44, 45 (2011); Hoopa
Valley Tribe v. FERC, 913 F.3d 1099, 1104 (D.C. Cir.
2019); Ala. Rivers Alliance v. FERC, 325 F.3d 290,
296–97 (D.C. Cir. 2003); Cal. Trout v. FERC, 313
F.3d 1131, 1133 (9th Cir. 2002); Am. Rivers, Inc. v.
FERC, 129 F. 3d 99, 107 (2d Cir. 1997).
14 The federal government may obtain exclusive
federal jurisdiction over lands in multiple ways,
including where the federal government purchases
lands consistent with article 1, section 8, clause 17
of the U.S. Constitution and a state chooses to cede
jurisdiction to the federal government, or where the
federal government reserved jurisdiction upon
granting statehood. See Collins v. Yosemite Park
Co., 304 U.S. 518, 529–30 (1938); James v. Dravo
Contracting Co., 302 U.S. 134, 141–42 (1937);
Surplus Trading Co. v. Cook, 281 U.S. 647, 650–52
(1930); Fort Leavenworth Railroad Co. v. Lowe, 114
U.S. 525, 527 (1895). Examples of lands of exclusive
federal jurisdiction include Denali National Park.
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requires the EPA to submit its
evaluation and recommendations with
respect to the objection. The federal
agency will consider the jurisdiction’s
and the EPA’s recommendations, and
any additional evidence presented at the
hearing, and ‘‘shall condition such
license or permit in such manner as may
be necessary to insure compliance with
the applicable water quality
requirements’’ of the neighboring
jurisdiction. Id. If the conditions cannot
ensure compliance, the federal agency
shall not issue the license or permit.
The EPA also must provide technical
assistance for section 401 certifications
upon the request of any federal or State
agency or project proponent. Id. at
1341(b). Technical assistance might
include provision of any relevant
information on or comment on methods
to comply with applicable effluent
limitations, standards, regulations,
requirements, or water quality
standards.
Finally, the EPA is responsible for
developing regulations and guidance to
ensure effective implementation of all
CWA programs, including section 401.
Legislative history indicates that
Congress created the water quality
certification requirement to ‘‘recognize[ ]
the responsibility of Federal agencies to
protect water quality whenever their
activities affect public waterways.’’ S.
Rep. No. 91–351, at 3 (1969). ‘‘In the
past, these [Federal] licenses and
permits have been granted without any
assurance that the [water quality]
standards will be met or even
considered.’’ Id. As an example, the
legislative history discusses the Atomic
Energy Commission’s failure to consider
the impact of thermal pollution on
receiving waters when evaluating ‘‘site
selection, construction, and design or
operation of nuclear powerplants.’’ Id.
The certification requirement first
appeared in section 21(b) of the
FWPCA, and it required States to certify
that ‘‘such activity will be conducted in
a manner which will not violate
applicable water quality standards.’’
Public Law 91–224, 21(b)(1), 84 Stat. 91
(1970) (emphasis added). As described
above, the 1972 amendments
restructured the CWA and created a
framework for compliance with effluent
limitations that would be established in
discharge permits issued pursuant to the
new federal permitting program. The
pre-existing water quality certification
requirement was retained in section 401
of the 1972 amendments but modified to
be consistent with the overall
restructuring of the CWA. The new
section 401 required a water quality
certification to assure that the
‘‘discharge will comply’’ with effluent
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limitations and other enumerated
regulatory provisions of the Act. 33
U.S.C. 1341(a) (emphasis added). The
1972 amendments also established a
new section 401(d), which provides that
certifications ‘‘shall set forth any
effluent limitations and other
limitations, and monitoring
requirements necessary to assure’’
compliance with the same enumerated
CWA provisions and with ‘‘any other
appropriate requirement’’ of State or
Tribal law. 33 U.S.C. 1341(d).
The EPA first promulgated water
quality certification regulations in 1971
to implement section 21(b) of the
FWPCA.15 Some operative provisions of
the EPA’s 1971 certification regulations
contain language from section 21(b) of
the FWPCA that Congress changed in
the 1972 amendments. For example, the
EPA’s 1971 certification regulations
directed authorities to certify that ‘‘the
activity will be conducted in a manner
which will not violate applicable water
quality standards.’’ 40 CFR 121.2(a)(2)–
(3) (emphasis added). These outdated
provisions do not reflect the language of
section 401 (as discussed elsewhere in
this preamble) and have caused
confusion for States, Tribes,
stakeholders, and courts reviewing
section 401 certifications. In section
304(h) of the CWA, Congress
commanded the EPA to promulgate
certification guidelines within 180 days
of enactment of the 1972 amendments.
See 33 U.S.C. 1314(h) (directing EPA to
‘‘promulgate,’’ by April 1973,
‘‘guidelines establishing test procedures
for the analysis of pollutants that shall
include the factors which must be
provided in any certification pursuant
to section 401 of this Act’’). Yet the EPA
has not updated its certification
regulations to conform with the 1972
amendments until now. A primary goal
for this final rule is to update and clarify
the Agency’s regulations to ensure that
they are consistent with the CWA.
3. The EPA’s 1971 Certification
Regulations
The EPA’s 1971 certification
regulations required certifying
authorities to act on a certification
request within a ‘‘reasonable period of
time.’’ 40 CFR 121.16(b). The
regulations provided that the federal
licensing or permitting agency
15 The EPA’s 1971 certification regulations were
located at 40 CFR part 121. The EPA has also
promulgated regulations addressing how 401
certification applies to the CWA section 402 NPDES
program, found at 40 CFR 124.53, 124.54, 124.55.
See 48 FR 14264 (Apr. 1, 1983). This final rule does
not address the NPDES regulations, and the Agency
will make any necessary conforming regulatory
changes in a subsequent rulemaking.
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determines what constitutes a
‘‘reasonable period,’’ and that the period
shall generally be six months but in any
event shall not exceed one year. Id.
The 1971 certification regulations also
provided that certifying authorities may
waive the certification requirement
under two circumstances: First, when
the certifying authority sends written
notification expressly waiving its
authority to act on a request for
certification; and second, when the
federal licensing or permitting agency
sends written notification to the EPA
Regional Administrator that the
certifying authority failed to act on a
certification request within a reasonable
period of time after receipt of such a
request. Id. at 121.16(a)–(b). Once
waiver occurs, certification is not
required, and the federal license or
permit may be issued. 33 U.S.C. 1341(a).
The 1971 certification regulations
established different requirements that
applied when the EPA was the
certifying authority, including specific
information that must be included in a
certification request and additional
procedures. Under these requirements,
the project proponent was required to
submit to the EPA Regional
Administrator the name and address of
the project proponent, a description of
the facility or activity and of any related
discharge into waters of the United
States, a description of the function and
operation of wastewater treatment
equipment, dates on which the activity
and associated discharge would begin
and end, and a description of the
methods to be used to monitor the
quality and characteristics of the
discharge. 40 CFR 121.22. Once the
request was submitted to the EPA, the
Regional Administrator was required to
provide public notice of the request and
an opportunity to comment, specifically
stating that ‘‘all interested and affected
parties will be given reasonable
opportunity to present evidence and
testimony at a public hearing on the
question whether to grant or deny
certification if the Regional
Administrator determines that such a
hearing is necessary or appropriate.’’ Id.
at 121.23. If, after consideration of
relevant information, the Regional
Administrator determined that there is
‘‘reasonable assurance that the proposed
activity will not result in a violation of
applicable water quality standards,’’ the
Regional Administrator would issue the
certification.16 Id. at 121.24.
16 Use of the terms ‘‘reasonable assurance’’ and
‘‘activity’’ in this operative provision of the EPA’s
1971 certification regulations was consistent with
section 21(b) of the pre-1972 statutory language.
However, those terms are not used in the operative
provision of CWA section 401, which replaced the
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The 1971 certification regulations
identified a number of requirements that
all certifying authorities must include in
a section 401 certification. Id. at 121.2.
For example, the regulations provided
that a section 401 certification shall
include the name and address of the
project proponent. Id. at 121.2(a)(2).
They also provided that the certification
shall include a statement that the
certifying authority examined the
application made by the project
proponent to the federal licensing or
permitting agency and bases its
certification upon an evaluation of the
application materials which are relevant
to water quality considerations or that it
examined other information sufficient to
permit the certifying authority to make
a statement that there is a ‘‘reasonable
assurance that the activity will be
conducted in a manner which will not
violate applicable water quality
standards.’’ Id. at 121.2(a)(2)–(3).
Finally, the regulations provided that
the certification shall state ‘‘any
conditions which the certifying agency
deems necessary or desirable with
respect to the discharge of the activity,’’
and other information that the certifying
authority deems appropriate.17 Id. at
121.2(a)(4)–(5).
The 1971 certification regulations also
established a process for the EPA to
provide notification to neighboring
jurisdictions in a manner that is similar
to that provided in CWA section
401(a)(2). Under the 1971 certification
regulations, the Regional Administrator
was required to review the federal
license or permit application, the
certification, and any supplemental
information provided to the EPA by the
federal licensing or permitting agency,
and if the Regional Administrator
determined that there was ‘‘reason to
believe that a discharge may affect the
quality of the waters of any State or
States other than the State in which the
discharge originates,’’ the Regional
Administrator would notify each
affected State within thirty days of
receipt of the application materials and
certification. Id. at 121.13. If the
documents provided were insufficient
to make the determination, the Regional
Administrator could request any
supplemental information ‘‘as may be
required to make the determination.’’ Id.
at 121.12. In cases where the federal
licensing or permitting agency held a
public hearing on the objection raised
by a neighboring jurisdiction, notice of
such objection was required to be
pre-1972 language. See Public Law 91–224, 21(b)(1),
84 Stat. 91 (1970).
17 The term ‘‘desirable’’ is also not used in CWA
section 401.
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forwarded to the Regional Administrator
by the licensing or permitting agency no
later than 30 days prior to the hearing.
Id. at 121.15. At the hearing, the
Regional Administrator was required to
submit an evaluation and
‘‘recommendations as to whether and
under what conditions the license or
permit should be issued.’’ Id.
The 1971 certification regulations
established that the Regional
Administrator ‘‘may, and upon request
shall’’ provide federal licensing and
permitting agencies with information
regarding water quality standards and
advise them as to the status of
compliance by dischargers with the
conditions and requirements of
applicable water quality standards. Id.
at 121.30.
Finally, the 1971 certification
regulations established an oversight role
for the EPA when a certifying authority
modified a prior certification. The
regulation provided that a certifying
authority could modify its certification
‘‘in such manner as may be agreed upon
by the certifying agency, the licensing or
permitting agency, and the Regional
Administrator.’’ Id. at 121.2(b)
(emphasis added).
As noted throughout this final rule
preamble, the EPA’s 1971 certification
regulations were promulgated prior to
the 1972 CWA amendments and in
many respects do not reflect the current
statutory language in section 401. In
addition, the EPA’s 1971 certification
regulations do not address some
important procedural and substantive
components of section 401 certification
review and action. This final rule is
intended to modernize the EPA’s
regulations, align them with the current
text and structure of the CWA, and
provide additional regulatory
procedures that the Agency believes
will help promote consistent
implementation of section 401 and
streamline federal license and permit
processes, consistent with the objectives
of the Executive Order.
4. Judicial Interpretations of Section 401
During the 48 years since its passage,
the federal courts on numerous
occasions have interpreted key
provisions of section 401. The United
States Supreme Court has twice
addressed questions related to the scope
and triggering mechanism of section
401, and lower courts also have
addressed certain elements of section
401 certifications. This section of the
preamble summarizes the U.S. Supreme
Court decisions and major lower court
decisions.
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a. U.S. Supreme Court Decisions
i. PUD No. 1 of Jefferson County
In 1994, the Supreme Court reviewed
a water quality certification issued by
the State of Washington for a new
hydroelectric project on the Dosewallips
River. See PUD No. 1 of Jefferson
County v. Washington Dep’t of Ecology,
511 U.S. 700 (1994) (PUD No. 1). This
particular decision, though narrow in its
holding, has been read by other courts
as well as the EPA (in past years) and
some States and Tribes to significantly
broaden the scope of section 401 beyond
its plain meaning.
The principal dispute adjudicated in
PUD No. 1 was whether a State or Tribe
may require a minimum stream flow as
a condition in a certification issued
under section 401. In this case, the
project proponent identified two
potential discharges from its proposed
hydroelectric facility: ‘‘the release of
dredged and fill material during
construction of the project, and the
discharge of water at the end of the
tailrace after the water has been used to
generate electricity.’’ 511 U.S. at 711.
The project proponent argued that the
minimum stream flow condition was
unrelated to these discharges and
therefore beyond the scope of the State’s
authority under section 401. Id.
The Court analyzed sections 401(a)
and 401(d); specifically, it analyzed the
use of different terms in those sections
of the statute to inform the scope of a
section 401 certification. Section 401(a)
requires the certifying authority to
certify that the discharge from a
proposed federally licensed or
permitted project will comply with
enumerated CWA provisions, and
section 401(d) allows the certifying
authority to include conditions to assure
that the applicant will comply with
enumerated CWA provisions and ‘‘ ‘any
other appropriate’ state law
requirements.’’ 511 U.S. at 700.
Emphasizing that the text of section
401(d) ‘‘refers to the compliance of the
applicant, not the discharge,’’ the Court
concluded that section 401(d) ‘‘is most
reasonably read as authorizing
additional conditions and limitations on
the activity as a whole once the
threshold condition, the existence of a
discharge, is satisfied.’’ Id. at 712.
The Court then concluded that this
interpretation of the statute was
consistent with the EPA’s 1971
certification regulations, to which the
Court accorded Chevron deference.18
The Court favorably quoted the EPA’s
18 The Court apparently failed to identify or
understand that the EPA’s regulations were
promulgated prior to the 1972 CWA amendments
and thus do not interpret the 1972 Act.
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1971 certification regulations at 40 CFR
121.2(a)(3); quoted the EPA’s guidance
titled Wetlands and 401 Certification;
and stated that ‘‘EPA’s conclusion that
activities—not merely discharges—must
comply with state water quality
standards is a reasonable interpretation
of § 401 and is entitled to deference.’’
511 U.S. at 712 (citing, inter alia,
Chevron U.S.A. Inc. v. Natural
Resources Defense Council, Inc., 467
U.S. 837 (1984)).
The Court was careful to note that a
State’s authority to condition a
certification ‘‘is not unbounded’’ and
that States ‘‘can only ensure that the
project complies with ‘any applicable
effluent limitations and other
limitations, under [33 U.S.C. 1311,
1312]’ or certain other provisions of the
Act, ‘and with any other appropriate
requirement of State Law.’ ’’ 511 U.S. at
712. The Court concluded that ‘‘state
water quality standards adopted
pursuant to § 303 are among the ‘other
limitations’ with which a State may
ensure compliance through the § 401
certification process’’ and noted that its
view ‘‘is consistent with EPA’s view of
the statute,’’ again citing the EPA’s pre1972 regulations and subsequent
guidance. Id. at 713.
Although PUD No. 1 has been
interpreted broadly by some to expand
State authority under section 401—
beyond assessing water quality impacts
from the discharge, so as to allow
conditions beyond the enumerated
CWA provisions—the Court did not
stray from the bedrock principles that a
section 401 certification must address
water quality and that appropriate
conditions include those necessary to
assure compliance with the State’s
water quality standards. Indeed,
referring to the section 401 language
allowing certification conditions based
on ‘‘any other appropriate requirements
of state law,’’ the Court explicitly
declined to speculate ‘‘on what
additional state laws, if any, might be
incorporated by this language. But at a
minimum, limitations imposed
pursuant to state water quality
standards adopted pursuant to § 303 are
appropriate requirements of state law.’’
511 U.S. at 713 (emphasis added).
On the scope of section 401, the
dissenting opinion in PUD No. 1 would
have declined to adopt the
interpretation suggested by the EPA’s
regulations and guidance and instead
analyzed the statutory section as a
whole, attempting to harmonize sections
401(a) and (d). The dissent first noted
that, if the majority’s conclusion that
States can impose conditions unrelated
to discharges is correct, ‘‘Congress’
careful focus on discharges in
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§ 401(a)(1)—the provision that describes
the scope and function of the
certification process—was wasted
effort,’’ and that the majority’s
conclusion ‘‘effectively eliminates the
constraints of § 401(a)(1).’’ 511 U.S. at
726 (Thomas, J., dissenting). The dissent
then ‘‘easily reconciled’’ the two
provisions by concluding that ‘‘it is
reasonable to infer that the conditions a
State is permitted to impose on
certification must relate to the very
purpose the certification process is
designed to serve. Thus, while section
401(d) permits a State to place
conditions on a certification to ensure
compliance of ‘the applicant,’ those
conditions must still be related to
discharges.’’ Id. at 726–27. The dissent
further noted that each of the CWA
provisions enumerated in section 401
‘‘describes discharge-related
limitations’’ and therefore that the plain
language of section 401(d) supports the
conclusion that certification conditions
must address water quality concerns
from the discharge, not the proposed
activity as a whole. Id. at 727. Finally,
the dissent applied the principle
ejusdem generis in its analysis of
statutory construction and concluded
that because ‘‘other appropriate
requirements of state law’’ are included
in a list of more specific dischargerelated CWA provisions, this ‘‘general
reference to ‘appropriate’ requirements
of state law is most reasonably
construed to extend only to provisions
that, like the other provisions in the list,
impose discharge-related restrictions.’’
Id. at 728.
The dissent also took issue with the
majority’s reliance, at least in part, on
the EPA’s regulations and its
application of Chevron deference. The
dissent noted that the Court had not first
identified ambiguity in the statute and
that the federal government had not
sought judicial deference to EPA’s
regulations. 511 U.S. at 728–29
(Thomas, J., dissenting). See also Brief
for the United States as Amicus Curiae
Supporting Affirmance, PUD No. 1 of
Jefferson County v. Washington Dep’t of
Ecology, No. 92–1911, (Dec. 1993). The
dissent noted that there was no EPA
interpretation directly addressing the
relationship between sections 401(a)
and (d), and that the only existing EPA
regulation that addresses the conditions
that may appear in section 401
certifications ‘‘speaks exclusively in
terms of limiting discharges.’’ 19 Id.
(citing 40 CFR 121.2(a)(4)).
19 The amicus brief filed by the Solicitor General
on behalf of the EPA in this case did not grapple
with the language in 401(a) and (d) at all, but
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The PUD No. 1 decision addressed
two other scope-related elements of
section 401: Whether certification
conditions may be designed to address
impacts to designated uses, and whether
conditions related to minimum stream
flows are appropriate under section 401.
First, the Court conducted a plain
language analysis of the CWA and
concluded that, ‘‘under the literal terms
of the statute, a project that does not
comply with a designated use of the
water does not comply with the
applicable water quality standards.’’ Id.
at 715. This means that a section 401
certification may appropriately include
conditions to require compliance with
designated uses, which, pursuant to the
CWA, are a component of a water
quality standard. Id. Second, the Court
acknowledged that the Federal Power
Act (FPA) empowers FERC ‘‘to issue
licenses for projects ‘necessary or
convenient . . . for the development,
transmission, and utilization of power
across, along, from, or in any of the
streams . . . over which Congress has
jurisdiction,’ ’’ and that the FPA
‘‘requires FERC to consider a project’s
effect on fish and wildlife.’’ Id. at 722.
Although the Court had previously
rejected a State’s minimum stream flow
requirement that conflicted with a
stream flow requirement in a FERC
license, the Court found no similar
conflict in this case because FERC had
not yet issued the hydropower license.
Id. Given the breadth of federal permits
that CWA section 401 applies to, the
Court declined to assert a broad
limitation on stream flow conditions in
certifications but concluded that they
may be appropriate if necessary to
enforce a State’s water quality standard,
including designated uses. Id. at 723.
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ii. S.D. Warren
In 2006, the Court revisited section
401 in connection with the State of
Maine’s water quality certification of
FERC license renewals for five
hydroelectric dams on the Presumpscot
primarily argued that the proposed project had two
distinct discharges (which were undisputed) and
that ‘‘both discharges could reasonably be said to
cause a violation of the State’s water quality
standards,’’ including the designated uses and
antidegradation components. Brief for the United
States as Amicus Curiae Supporting Affirmance,
PUD No. 1 of Jefferson County v. Washington Dep’t
of Ecology, No. 92–1911 at 12 n. 2 (Dec. 1993) (‘‘It
is therefore unnecessary to determine in this case
whether Congress intended by the use of the term
‘‘applicant,’’ rather than ‘‘discharge, ’’ in section
401(d) to grant States a broader power to condition
certifications under section 401(d) than to deny
them under section 401(a) and, if so, whether there
are limitations on the States’ authority to impose
such conditions.’’) The amicus brief also did not
inform the Court that the Agency’s implementing
regulations included language from the prior
version of the Act.
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River. S.D. Warren Co. v. Maine Bd. of
Envtl. Prot., 547 U.S. 370 (2006) (S.D.
Warren). The issue presented in S.D.
Warren was whether operation of a dam
may result in a ‘‘discharge’’ into the
waters of the United States, triggering
the need for a section 401 certification,
even if the discharge did not add any
pollutants. The Court analyzed the use
of different terms— ‘‘discharge’’ and
‘‘discharge of pollutants’’—within the
CWA, how those terms are defined, and
how they are used in CWA sections 401
and 402. The Court noted that section
402 expressly uses the term ‘‘discharge
of pollutants’’ and requires permits for
such discharges; and that section 401,
by contrast, provides a tool for States to
maintain water quality within their
jurisdiction and uses the term
‘‘discharge,’’ which is not
independently defined in the Act.20
Finding no specific definition of the
term ‘‘discharge’’ in the statute, the
Court turned to its common dictionary
meaning: A ‘‘flowing or issuing out’’
and concluded that the term is
‘‘presumably broader’’ than ‘‘discharge
of a pollutant.’’ Id. at 375–76.
The Court held that operating a dam
‘‘does raise a potential for a discharge’’
and, therefore, triggers section 401. 547
U.S. at 373. In so holding, the Court
observed that Congress had defined
‘‘pollution’’ under the Act to mean ‘‘the
man-made or man-induced alteration of
the chemical, physical, biological, and
radiological integrity of water,’’ 33
U.S.C. 1362(19), and that ‘‘[t]he
alteration of water quality as thus
defined is a risk inherent in limiting
river flow and releasing water through
turbines.’’ 547 U.S. at 385. Such changes
in a river ‘‘fall within a State’s
legitimate legislative business, and the
Clean Water Act provides for a system
that respects the State’s concerns.’’ Id. at
386. The Court concluded by observing
that ‘‘[s]tate certifications under
[section] 401 are essential in the scheme
to preserve state authority to address the
broad range of pollution.’’ Id. This
sentence, when read in isolation, has
been interpreted as broadening the
scope of section 401 to allow certifying
authorities to consider potential
environmental impacts from a proposed
federally licensed or permitted project
that have nothing to do with water
quality. However, the Court followed
that sentence with a quote from Senator
Muskie’s floor statement during the
enactment of section 401:
20 The Court noted that the Act provides that ‘‘the
term ‘discharge’ when used without qualification
incudes a discharge of a pollutant, and a discharge
of pollutants.’’ 547 U.S. at 375 (quoting 33 U.S.C.
1362(16)).
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No polluter will be able to hide behind a
Federal license or permit as an excuse for a
violation of water quality standard[s]. No
polluter will be able to make major
investments in facilities under a Federal
license or permit without providing
assurance that the facility will comply with
water quality standards. No State water
pollution control agency will be confronted
with a fait accompli by an industry that has
built a plant without consideration of water
quality requirements.
Id. (emphasis added). The Court then
stated, ‘‘These are the very reasons that
Congress provided the States with
power to enforce ‘any other appropriate
requirement of State law,’ 33 U.S.C.
1341(d), by imposing conditions on
federal licenses for activities that may
result in a discharge.’’ Id. (emphasis
added). Thus, when read in context, the
Court’s statement about a State’s
authority to address a ‘‘broad range of
pollution’’ under section 401 does not
suggest that an ‘‘appropriate
requirement of State law’’ means
anything other than water quality
requirements or that a State’s or Tribe’s
action on a certification request can be
focused on anything other than
compliance with appropriate water
quality requirements.
b. Circuit Court Decisions
Over the years, federal appellate
courts have also addressed important
aspects of section 401, including the
timing for certifying authorities to act on
a request and the scope of authority of
federal agencies other than the EPA to
make determinations on section 401
certifications. This section highlights a
few of the most significant issues
concerning section 401 and the most
often cited decisions but does not cover
the universe of lower federal court or
State court case law. The Agency
intends for this final rule to provide
consistency and certainty where there
may currently be conflicting or unclear
but locally binding legal precedent.
Recent case law has provided insight
concerning the timing and waiver
provisions of section 401. In 2018, the
Second Circuit addressed the question
of when the statutory review clock
begins. N.Y. State Dep’t of Envtl.
Conservation v. FERC, 884 F.3d 450,
455–56 (2d Cir. 2018). Considering
Millennium Pipeline Company’s
certification request, the court disagreed
with the State of New York and held
that the statutory time limit is not
triggered when a State determines that
a request for certification is ‘‘complete,’’
but that the ‘‘plain language of Section
401 outlines a bright-line rule regarding
the beginning of review,’’ and that the
clock starts after ‘‘receipt of such
request’’ by the certifying authority. Id.
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Otherwise, the court noted that States
could ‘‘blur this bright-line into a
subjective standard, dictating that
applications are complete only when
state agencies decide that they have all
the information they need. The state
agencies could thus theoretically
request supplemental information
indefinitely.’’ Id. at 456. The Agency
agrees with this holding.
The D.C. Circuit has also recently
analyzed the statutory timeline for
review of a certification and has
correctly held that, consistent with the
plain language of CWA section
401(a)(1), ‘‘while a full year is the
absolute maximum, [the statute] does
not preclude a finding of waiver prior to
the passage of a full year.’’ Hoopa Valley
Tribe v. FERC, 913 F.3d 1099, 1104
(D.C. Cir. 2019), cert. denied sub nom.
Cal. Trout v. Hoopa Valley Tribe, 140
S.Ct. 650 (2019). Significantly, the court
observed that the EPA’s own
regulations—promulgated by ‘‘the
agency charged with administering the
CWA’’—allowed for waiver after only
six months. Id.
In Hoopa Valley Tribe, the D.C.
Circuit also correctly held that ‘‘the
withdrawal-and-resubmission of water
quality certification requests does not
trigger new statutory periods of review.’’
Id. at 1101. The court found that the
project proponent and the certifying
authorities (California and Oregon) had
improperly entered into an agreement
whereby the ‘‘very same’’ request for
State certification of its relicensing
application was automatically
withdrawn-and resubmitted every year
by operation of ‘‘the same one-page
letter,’’ submitted to the States before
the statute’s one-year waiver deadline.
Id. at 1104. The court observed that
‘‘[d]etermining the effectiveness of such
a withdrawal-and-resubmission scheme
is an undemanding inquiry’’ because the
statute’s text ‘‘is clear’’ that failure or
refusal to act on a request for
certification within a reasonable period
of time, not to exceed one year, waives
the State’s ability to certify.21 Id. at 1103.
The court found that, pursuant to the
unlawful withdrawal-and-resubmission
‘‘scheme,’’ the States had not yet
rendered a certification decision ‘‘more
than a decade’’ after the initial request
was submitted to the States. Id. at 1104.
The court declined to ‘‘resolve the
21 Two decisions from the Second Circuit recently
acknowledged that project proponents have
withdrawn and resubmitted certification requests to
extend the reasonable time period for a state to
review. See N.Y. State Dep’t of Envtl. Conservation
v. FERC, 884 F.3d at 456; Constitution Pipeline v.
N.Y. State Dep’t of Envtl. Conservation, 868 F.3d
87, 94 (2d Cir. 2018). However, in neither case did
the court opine on the legality of such an
arrangement.
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legitimacy’’ of an alternative
arrangement whereby an applicant may
actually submit a new request in place
of the old one. Id. Nor did it determine
‘‘how different a request must be to
constitute a ‘new request’ such that it
restarts the one-year clock.’’ Id. On the
facts before it, the court found that
‘‘California’s and Oregon’s deliberate
and contractual idleness’’ defied the
statute’s one-year limitation and
‘‘usurp[ed] FERC’s control over whether
and when a federal license will issue.’’
Id.
Another important area of case law
deals with the scope of authority and
deference provided to federal agencies
other than the EPA in addressing issues
arising under section 401. Many other
federal agencies, including FERC and
the Corps, routinely issue licenses and
permits that require section 401
certifications and are responsible for
enforcing State certification conditions
that are incorporated into federal
licenses and permits. However, because
the EPA has been charged by Congress
with administering the CWA, some
courts have concluded that those other
federal agencies are not entitled to
deference on their interpretations of
section 401. See Ala. Rivers Alliance v.
FERC, 325 F.3d 290, 296–97 (D.C. Cir.
2002); Am. Rivers, Inc. v. FERC, 129
F.3d 99, 107 (2d. Cir. 1997). Other
courts have concluded that FERC has an
affirmative obligation to determine
whether a certifying authority has
complied with requirements related to a
section 401 certification. See City of
Tacoma v. FERC, 460 F.3d 53, 67–68
(D.C. Cir. 2006) (FERC had an obligation
to ‘‘obtain some minimal confirmation
of such compliance’’); see also Keating
v. FERC, 927 F.2d 616, 622–23, 625
(D.C. Cir. 1991) (while a federal agency
may not question propriety of State
certification before license has issued,
‘‘FERC must at least decide whether the
state’s assertion of revocation satisfies
section 401(a)(3)’s predicate
requirements’’).
In an important determination of
procedural authorities, the Second
Circuit has held that FERC—as the
licensing agency—‘‘may determine
whether the proper state has issued the
certification or whether a state has
issued a certification within the
prescribed period.’’ Am. Rivers, Inc.,
129 F.3d at 110–11. This holding is
correct; the holding is consistent with
and supported by the implied statutory
authority of a federal agency to establish
the ‘‘reasonable period of time (which
shall not exceed one year)’’ in the first
place. 33 U.S.C. 1341(a)(1).
Case law also highlights the potential
enforcement challenges that federal
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42223
agencies face with section 401
certification conditions that are
included in federal licenses and
permits. Federal agencies have been
admonished not to ‘‘second guess’’ a
State’s water quality certification or its
conditions, see, e.g., City of Tacoma,
460 F.3d at 67; Am. Rivers Inc., 129 F.3d
at 107; U.S. Dept. of Interior v. FERC,
952 F.2d 538, 548 (D.C. Cir. 1992)
(‘‘FERC may not alter or reject
conditions imposed by the states
through section 401 certificates.’’), even
where the federal agency has attempted
to impose conditions that are more
stringent than the State’s conditions.
See Sierra Club v. U.S. Army Corps of
Engineers, 909 F.3d 635, 648 (4th Cir.
2018) (‘‘the plain language of the Clean
Water Act does not authorize the Corps
to replace a state condition with a
meaningfully different alternative
condition, even if the Corps reasonably
determines that the alternative
condition is more protective of water
quality’’); see also Lake Carriers’ Assoc.
v. EPA, 652 F.3d 1, 6, 12 (D.C. Cir. 2011)
(concluding that additional notice and
comment on State certification
conditions would have been futile
because ‘‘the petitioners have failed to
establish that EPA can alter or reject
state certification conditions. . . .’’).
But in Lake Carriers’ Assoc., the court
also observed, ‘‘[n]otably, the petitioners
never argued that the certifications
failed to ‘compl[y] with the terms of
section 401,’ . . . by overstepping
traditional bounds of state authority to
regulate interstate commerce’’ (citing
City of Tacoma, 460 F.3d at 67), and the
court concluded that it ‘‘therefore need
not consider whether EPA has authority
to reject state conditions under such
circumstances.’’ Also, in Snoqualmie
Indian Tribe v. FERC, the Ninth Circuit
upheld FERC’s inclusion of minimum
flow requirements greater than those
specified in the State of Washington’s
certification as long as they ‘‘do not
conflict with or weaken the protections
provided by the [State] certification.’’
545 F.3d 1207, 1219 (9th Cir. 2008). In
that case, FERC had added license
conditions increasing the minimum
flows specified in the State’s
certification in order to ‘‘produce a great
amount of mist’’ which it determined
would ‘‘augment the Tribe’s religious
experience,’’ one of the water’s
designated uses. Id.; see also cases
discussed at section III.G of this notice
affirming a role for federal agencies to
confirm whether certifications comply
with the requirements of section 401.
This final rule is intended to provide
clarity to certifying authorities, federal
agencies, and project proponents, as it
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addresses comprehensively and for the
first time relevant competing case law
and attempts to clarify the scope of
conditions that may be included in a
certification and the federal agencies’
role in the certification process.
5. Administrative Law Principles
To understand the full context and
legal basis for this final rule, it is useful
to review some key governing principles
of administrative law. In general,
administrative agencies can exercise
only the authority that has been
provided to them by Congress, and
courts must enforce unambiguous terms
that clearly express congressional
intent. However, when Congress
delegates authority to administrative
agencies, it sometimes enacts
ambiguous statutory provisions. To
carry out their congressionally
authorized missions, agencies,
including the EPA, must often interpret
ambiguous statutory terms. However,
they must do so consistent with
congressional intent. In Chevron, U.S.A.
v. Natural Resources Defense Council,
Inc., 467 U.S. 837 (1984) (Chevron), the
Supreme Court concluded that courts
have a limited role when reviewing
agency interpretations of ambiguous
statutory terms. In such cases, reviewing
courts defer to an agency’s
interpretation of ambiguous terms if the
agency’s interpretation is reasonable.
Under Chevron, federal agencies—not
federal courts—are charged in the first
instance with resolving statutory
ambiguities to implement delegated
authority from Congress.
The Supreme Court has described the
Chevron analysis as a ‘‘two-step’’
process. Encino Motorcars, LLC v.
Navarro, 136 S. Ct. 2117, 2124 (2016).
At step one, the reviewing court
determines whether Congress has
‘‘directly spoken to the precise question
at issue.’’ Chevron, 467 U.S. at 842. If so,
‘‘that is the end of the matter; for the
court, as well as the agency, must give
effect to the unambiguously expressed
intent of Congress.’’ Id. at 842–43. If the
statute is silent or ambiguous, the
reviewing court proceeds to the second
step, in which the court must defer to
the agency’s ‘‘reasonable’’ interpretation
of the statute. Id. at 844.
In the field of judicial review of
agencies’ regulations that interpret
statutes that those agencies administer,
Chevron deference relies on the
principle that ‘‘when Congress grants an
agency the authority to administer a
statute by issuing regulations with the
force of law, it presumes the agency will
use that authority to resolve ambiguities
in the statutory scheme.’’ Encino
Motorcars, 136 S. Ct. at 2125 (citing
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Chevron, 467 U.S. at 843–44). Courts
thus have applied Chevron deference to
an agency’s statutory interpretation
‘‘when it appears that Congress
delegated authority to the agency
generally to make rules carrying the
force of law, and that the agency
interpretation claiming deference was
promulgated in the exercise of that
authority.’’ Mayo Found. for Medical
Educ. and Res. v. United States, 562
U.S. 44, 45 (2011) (quoting United
States v. Mead Corp., 533 U.S. 218, 226–
27 (2001)).
In Chevron, the Supreme Court
reviewed the EPA’s interpretation of
statutory language from the Clean Air
Act Amendments of 1977. Congress
amended the Clean Air Act to impose
requirements on States that had not
achieved the national air quality
standards promulgated by the EPA.
States that had not attained the
established air standards had to
implement a permit program that would
regulate ‘‘new or modified major
stationary sources’’ of air pollution.
Clean Air Act Amendments of 1977,
Public Law 95–95, 91 Stat. 685 (1977).
The EPA promulgated regulations
defining a ‘‘stationary source’’ as the
entire plant where pollutant-producing
structures may be located. The EPA,
therefore, treated numerous pollutionproducing structures collectively as a
single ‘‘stationary source,’’ even if those
structures were part of the same larger
facility or complex. See 40 CFR
51.18(j)(1)(i)–(ii) (1983). Under the
EPA’s regulation, a facility could modify
or construct new pollution-emitting
structures within the facility or complex
as long as the stationary source—the
facility as a whole—did not increase its
pollution emissions.
In 1981, the Natural Resources
Defense Council (NRDC) opposed the
EPA’s definition of ‘‘stationary source’’
and filed a challenge to the Agency’s
regulations. The D.C. Circuit agreed
with the NRDC and set aside the EPA’s
regulations. The D.C. Circuit
acknowledged that the Clean Air Act
‘‘does not explicitly define what
Congress envisioned as a ‘stationary
source,’ to which the permit program
. . . should apply,’’ and also concluded
that Congress had not clearly addressed
the issue in the legislative history.
NRDC v. Gorsuch, 685 F.2d 718, 723
(DC Cir. 1982). Without clear text or
intent from Congress, the D.C. Circuit
looked to the purposes of the program
to guide the court’s interpretation. Id. at
726. According to the court, Congress
sought to improve air quality when it
amended the Clean Air Act, and the
EPA’s definition of ‘‘stationary source’’
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merely promoted the maintenance of
current air quality standards.
In a unanimous decision, the
Supreme Court reversed, finding that
the D.C. Circuit had committed a ‘‘basic
legal error’’ by adopting ‘‘a static
judicial definition of the term
‘stationary source’ when it had decided
that Congress itself had not commanded
that decision.’’ Chevron, 467 U.S. at 842.
The Court explained that it is not the
judiciary’s place to establish a
controlling interpretation of a statute
delegating authority to an agency, but,
rather, that it is the agency’s job to ‘‘fill
any gap left, implicitly or explicitly, by
Congress.’’ Id. at 843. When Congress
expressly delegates to an administrative
agency the authority to interpret a
statute through regulation, courts cannot
substitute their own interpretation of
the statute when the agency has
provided a reasonable construction of
the statute. See id. at 843–44.
During the rulemaking process, the
EPA had explained that Congress had
not fully addressed the definition of
‘‘source’’ in the amendments to the
Clean Air Act or in the legislative
history. Id. at 858. The Supreme Court
agreed, concluding that ‘‘the language of
[the statute] simply does not compel any
given interpretation of the term
‘source.’’’ Id. at 860. And the legislative
history associated with the amendments
was ‘‘silent on the precise issue.’’ Id. at
862.
In its proposed and final rulemaking,
the EPA noted that adopting an
individualized equipment definition of
‘‘source’’ could disincentivize the
modernization of plants, if industry had
to go through the permitting process to
create changes. Id. at 858. The EPA
believed that adopting a plant-wide
definition of ‘‘source’’ could result in
reduced pollution emissions. Id.
Considering the Clean Air Act’s
competing objectives of permitting
economic growth and reducing
pollution emissions, the Supreme Court
stated that ‘‘the plantwide definition is
fully consistent with one of those
concerns—the allowance of reasonable
economic growth—and, whether or not
we believe it most effectively
implements the other, we must
recognize that the EPA has advanced a
reasonable explanation for its
conclusion that the regulations serve the
environmental objectives as well.’’ Id. at
863. The Court upheld the EPA’s
definition of the term ‘‘stationary
source,’’ explaining that ‘‘the
Administrator’s interpretation
represents a reasonable accommodation
of manifestly competing interests and is
entitled to deference: The regulatory
scheme is technical and complex, the
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agency considered the matter in a
detailed and reasoned fashion, and the
decision involves reconciling
conflicting policies.’’ Id. at 865.22
In the Brand X decision, the Supreme
Court further elaborated on the Chevron
doctrine, upholding agencies’ broad
power to interpret ambiguous statutes as
against contrary judicial interpretations.
Even if a court has ruled on the
interpretation of a statute, the ‘‘court’s
prior judicial construction of a statute
trumps an agency construction
otherwise entitled to Chevron deference
only if the prior court decision holds
that its construction follows from the
unambiguous terms of the statute and
thus leaves no room for agency
discretion.’’ Nat’l Cable & Telecomm.
Ass’n v. Brand X internet Serv., 545 U.S.
967, 982 (2005) (emphasis added). Put
another way, Brand X held that ‘‘a
court’s choice of one reasonable reading
of an ambiguous statute does not
preclude an implementing agency from
later adopting a different reasonable
interpretation.’’ United States v. Eurodif
S.A., 555 U.S. 305, 315 (2009). This
principle stems from Chevron itself,
which ‘‘established a ‘presumption that
Congress, when it left ambiguity in a
statute meant for implementation by an
agency, understood that the ambiguity
would be resolved, first and foremost,
by the agency, and desired the agency
(rather than the courts) to possess
whatever degree of discretion the
ambiguity allows.’ ’’ Brand X, 545 U.S.
at 982 (quoting Smiley v. Citibank, 517
U.S. 735, 740–41 (1996)). As Chevron
itself noted, even the ‘‘initial agency
interpretation is not instantly carved in
stone.’’ Chevron, 467 U.S. at 863.
In Brand X, the Federal
Communications Commission (FCC or
Commission) interpreted the scope of
the Communications Act of 1934, which
subjects providers of
‘‘telecommunications service’’ to
mandatory common-carrier regulations.
Brand X, 545 U.S. at 977–78. Brand X
internet Services challenged the FCC’s
interpretation, and the Ninth Circuit
concluded, based on the court’s
precedent, that the Commission’s
construction of the Communications Act
was impermissible Id. at 979–80. The
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22 For
other instructive applications of Chevron’s
interpretative principles, see Entergy Corp. v.
Riverkeeper, Inc. 556 U.S. 208, 222–23 (2009)
(statutory silence interpreted as ‘‘nothing more than
a refusal to tie the agency’s hands’’); Zuni Pub.
School Dist. v Dep’t of Educ. 550 U.S. 81, 89–94
(2007) (court considered whether agency’s
interpretation was reasonable in light of the ‘‘plain
language of the statute’’ as well as the statute’s
‘‘background and basic purposes’’); Healthkeepers,
Inc. v. Richmond Ambulance Auth., 642 F.3d 466,
471 (4th Cir. 2011) (‘‘statutory construction . . . is
a holistic endeavor’’).
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Supreme Court granted certiorari and
reversed. The Supreme Court upheld
the FCC’s interpretation of the
Communications Act by applying
Chevron’s two-step analysis. The Court
found that the relevant statutory
provisions failed to unambiguously
foreclose the Commission’s
interpretation, while other provisions
were silent. The FCC had ‘‘discretion to
fill the consequent statutory gap,’’ and
its construction was reasonable. Id. at
997.
As the Court noted, the entire ‘‘point
of Chevron is to leave the discretion
provided by the ambiguities of a statute
with the implementing agencies.’’ 545
U.S. at 981 (quoting Smiley, 517 U.S. at
742). Thus courts cannot rely on judicial
precedent to override an agency’s
interpretation of an ambiguous statute.
Id. at 982. Instead, as a ‘‘better rule,’’ a
reviewing court can rely only on
precedent that interprets a statute at
‘‘Chevron step one.’’ Id. ‘‘Only a judicial
precedent holding that the statute
unambiguously forecloses the agency’s
interpretation, and therefore contains no
gap for the agency to fill, displaces a
conflicting agency construction.’’ Id. at
982–83. A contrary rule would produce
anomalous results, because the
controlling interpretation would then
turn on whether a court or the agency
had interpreted the statutory provision
first. See id. at 983. ‘‘[W]hether Congress
has delegated to an agency the authority
to interpret a statute does not depend on
the order in which the judicial and
administrative constructions occur.’’ Id.
Agencies have the authority to revise
‘‘unwise judicial constructions of
ambiguous statutes.’’ Id.
6. Response to Comments on the Legal
Background
The Agency solicited and received
numerous comments on the legal
background for the proposed rule.
Among others, these comments
included legal arguments pertaining to
the Tenth Amendment, interstate
commerce, cooperative federalism, the
APA, and the Agency’s rulemaking
authority. The sections below provide
the EPA’s response to the most salient
of those comments.
a. The Tenth Amendment and the
Commerce Clause
Some commenters asserted the
proposed rule would violate the Tenth
Amendment, citing the sovereignty that
States have over waters of the United
States. One commenter asserted that
jurisdictional power over waters of the
State was reserved for the States and not
delegated to Congress. Another
commenter asserted that the proposal
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would constitute a ‘‘usurping’’ of State
authority and overstepping the Tenth
Amendment rights of the States. The
EPA disagrees with these commenters.
For the reasons set forth in section II.F.1
of this notice and in the following
paragraph, the Agency considers this
final rule to be a careful and thoughtful
clarification of State and Tribal
involvement in federal licensing or
permitting proceedings, including those
in which State and Tribal authority may
otherwise be preempted by federal law.
The final rule does not ‘‘usurp’’ State
authority. As discussed, the EPA’s final
rule is consistent with section 401,
strikes the appropriate balance Congress
intended between federal and State
authority, and does not limit State
authority any more than Congress
intended under section 401.
The Agency also received a comment
asserting that the proposed rule would
violate the Tenth Amendment because
federal agencies cannot commandeer
States to regulate interstate commerce in
particular ways, citing New York v.
United States, 505 U.S. 144, 166 (1992).
The commenter noted that in New York,
the Supreme Court, in striking down
portions of the Low-Level Radioactive
Waste Policy Amendments Act of 1985
that required States to regulate as
Congress instructed or to take title to the
waste, found that Congress cannot
command States how to legislate and
that Congress must exercise legislative
authority only directly upon
individuals. The Agency disagrees with
this commenter. This final rule neither
directs the functioning of the States nor
commands States how to legislate or
regulate. The final rule merely affirms
and clarifies the scope of the authority
that Congress granted to certifying
authorities to review and condition a
federal license or permit within certain
reasonable bounds, informed by the text
of the Act, and provides a procedural
framework for States, Tribes, and federal
agencies to follow that will promote
consistency in 401 certification
proceedings.
In the proposal, the EPA solicited
comment on whether the proposed rule
appropriately balanced the scope of
State authority under section 401 with
Congress’ goal of facilitating commerce
on interstate navigable waters. Some
commenters argued that the cases
referenced in the proposed rule
preamble, including Lighthouse
Resources, Inc. v. Inslee and Lake
Carrier’s Association v. EPA, 652 F.3d 1
(D.C. Cir. 2011), are not relevant to this
rulemaking. The Agency disagrees with
the suggestion that these cases are
irrelevant because, among other things,
they demonstrate that section 401
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actions are not insulated from legal
challenges asserting State or Tribal
interference with interstate commerce
and violations of the Commerce Clause.
The Agency did not rely on these
decisions to inform the substance of the
final rule; rather, they were considered
as part of the overall context of litigation
and regulatory uncertainty that
contributed to the need to update the
1971 certification regulations to be
consistent with CWA section 401.
Other commenters supported the
proposal and raised concerns that States
and Tribes could use section 401 actions
to override federal trade policy with
which they disagree. At least one
commenter asserted that coastal States
and States that border Canada and
Mexico could misuse section 401 to
block the construction of international
terminals for exports, including energy,
agricultural, and manufacturing exports.
This commenter asserted that such
misuse could also result in blocking
imports from trading partners based on
objections of a single State. The EPA
appreciates these comments and agrees
that there is a risk that State or Tribal
certification authority could be misused
in the way described by the commenter.
However, as described elsewhere in this
final rule preamble and in the Economic
Analysis for the Clean Water Act
Section 401 Certification Rule (‘‘the
Economic Analysis,’’ available in the
docket for this final rule), the EPA
acknowledges that many certifications
reflect an appropriately limited
interpretation of the purpose and scope
of section 401 and are issued without
controversy, and that the limitations
expressed in this rulemaking should
further curb any improper invocation of
section 401 authority.
The EPA has determined that this
final rule appropriately balances the
interests of State or Tribal participation
in federal license or permit proceedings
under section 401 with Congress’ goal of
facilitating interstate commerce on
navigable waters. Because Congress
relied on its authority under the
Interstate Commerce Clause when it
enacted the CWA, including section
401, this rule respects that balance. The
Agency has for the first time clearly
defined the scope of certification,
reducing the risk that States and Tribes
would deny or condition certifications
for reasons beyond the authority
provided in section 401 or that such
denials or conditions would place
undue burdens on interstate commerce.
b. Cooperative Federalism
A number of commenters asserted
that the proposed rule is inconsistent
with the concept of cooperative
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federalism and the important role of
States and Tribes as co-regulators, and
therefore, these commenters believed
that the proposed rule undermines the
cooperative federalism structure
established by Congress in the CWA in
section 101(b) and section 101(g). Most
of these commenters noted that the
CWA recognizes States’ primary
authority over their water resources,
designates States as co-regulators under
a system of cooperative federalism, and
expresses intent to preserve and protect
States’ responsibilities and rights.
Commenters stated that the CWA was
founded on a principle of cooperative
federalism, and that the EPA should not
dictate what States can and cannot do.
Another commenter asserted that the
proposed rule would unduly limit
States’ authority and autonomy to
protect their water resources. A few
commenters asserted that the proposed
rule would harm Congress’ division of
authority between certifying authorities
and federal licensing and permitting
agencies. Some commenters asserted
that the proposed rule neglects States’
interests.
Other commenters asserted that the
proposed rule is consistent with the
overall cooperative federalism
framework established by Congress in
the CWA and appropriately balances
federal and State authority. A few
commenters argued that under section
401, Congress was conferring on States
a narrow exception to act in areas that
are otherwise preempted entirely by
federal law. These commenters
described section 401 certifications as
playing a limited role in a much larger
federal permitting scheme envisioned in
the CWA. A few commenters supporting
the proposed rule described an
appreciation for the EPA’s desire to
preserve State sovereignty and
cooperative federalism in conjunction
with greater consistency in
implementing section 401. Several
commenters observed that the proposed
rule would promote efficiency and
would be consistent with the intent of
the 1972 CWA amendments, leading to
consistent nationwide implementation,
while allowing the States to retain their
primary roles under the CWA. Other
commenters stated that the current
regulations have allowed States to
impose conditions beyond the scope of
water quality effects of a discharge,
leading to lengthy delays and a process
that is ill-defined, confusing in scope,
and lacking clear deadlines. Other
commenters suggested that the proposed
rule supports timely issuance of permits
and licenses and agreed that the
proposed rule would ensure that section
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401 certification does not exceed the
scope of CWA jurisdiction.
The EPA has considered these diverse
comments and concludes that the final
rule does not infringe upon the roles of
States as co-regulators, nor does it
undermine cooperative federalism. The
final rule does not and cannot alter the
basic scope of authority granted by
Congress to States and Tribes for the
review of potential discharges
associated with federal licenses and
permits for compliance with water
quality standards. States and authorized
Tribes, for example, remain primarily
responsible to develop the water quality
standards with which federal projects
must comply.
Accordingly, this rule neither
diminishes nor undermines cooperative
federalism. Rather, the final rule clearly
identifies when a certification is
required and the permissible scope of
such a certification—including
conditions of that certification—and
reaffirms that certifying authorities have
a reasonable period of time to act on a
certification request, which cannot
exceed one year. This clarity helps
define the appropriate parameters of
cooperative federalism contemplated by
section 401, and does not undermine it.
The EPA disagrees with commenters
who suggest that concepts of
‘‘cooperative federalism’’ preclude the
EPA from establishing regulations to
implement section 401. Cooperative
federalism must be implemented
consistent with the statutory framework
under the CWA, which does not allow
EPA to authorize, either explicitly or by
implication, States to implement this
important federal program in a manner
beyond the authority established by
Congress. Indeed, as the Agency charged
with administering the CWA, EPA’s role
here is similar to its baseline setting
function in other aspects of the Act, to
ensure that there are sufficient
authorities and limitations in place for
States and Tribes to effectively
implement CWA programs within the
scope that Congress established. The
final rule provides, for the first time, a
consistent framework to govern the
implementation of CWA section 401
that complies with the 1972 CWA
amendments.
c. Administrative Procedure Act
Some commenters asserted that the
proposed rule is arbitrary and
capricious and an abuse of discretion.
Some commenters cited Motor Vehicle
Mfrs. Ass’n of U.S., Inc. v. State Farm
Mut. Auto., 463 U.S. 29 (1983), and
argued that the EPA ‘‘relied on factors
which Congress has not intended it to
consider, entirely failed to consider an
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important aspect of the problem, offered
an explanation for its decision that runs
counter to the evidence before the
agency or is so implausible that it could
not be ascribed to a difference in view
or the product of agency expertise.’’ Id.
at 43. One commenter asserted that the
EPA was arbitrary and capricious
because the proposed rule lacks analysis
of water quality impacts and fails to
consider whether the proposed rule, if
adopted, will ensure that the CWA’s
overarching goal to protect water quality
is met. This commenter further asserted
that when combined with the EPA’s
recent action to significantly narrow the
definition of ‘‘waters of the United
States,’’ the effect of the proposed rule
could be to leave a regulatory gap,
especially in cases where federal law
preempts State water quality
regulations. Commenters also argued,
citing State Farm, 463 U.S. at 43, that
the EPA failed to ‘‘examine the relevant
data and articulate a satisfactory
explanation for its action including a
rational connection between the facts
found and the choice made.’’ These
commenters also cited Nat’l Cotton
Council of Am. v. EPA, 553 F.3d 927,
939 (6th Cir. 2009), and asserted that,
when the EPA adopts CWA regulations,
it cannot ‘‘ignore the directive given to
it by Congress . . . which is to protect
water quality.’’ One commenter argued
that the Agency elevated industrial
interests over State section 401
authority and therefore considered
factors not allowed by Congress in
violation of the APA, citing Nat’l
Lifeline Ass’n v. FCC, 915 F.3d 19 (D.C.
Cir. 2019) (quoting Motor Vehicle Mfrs.
Ass’n v. State Farm Mut. Auto Ins. Co.,
463 U.S. 29, 43 (1983)).
The final rule is neither arbitrary nor
capricious nor an abuse of the EPA’s
discretion. In crafting the final rule, the
Agency started with the statutory
language of the CWA; where the plain
language of the Act was unclear or
otherwise ambiguous, the EPA
considered the structure and purposes
of the Act, relevant legal precedent, and
legislative history. The EPA also
carefully considered the widely varying
and competing comments received
during the pre-proposal outreach,
including Tribal and State engagement,
and more than 125,000 public
comments filed in the public docket,
which are described throughout this
final rule preamble. These are factors
that Congress intended the Agency to
consider. 5 U.S.C. 553(b) and (c). The
Agency carefully examined the statutory
language and the legislative history
when determining the scope of
certification and the appropriate role of
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federal licensing and permitting
agencies. The final rule promotes the
overarching goals of the CWA to
prevent, reduce, and eliminate pollution
in the nation’s waters and to regulate
discharges into waters of the United
States, while preserving States’ major
role in implementing the CWA. The
Agency has examined relevant and
available data and articulated a robust
basis for the rulemaking in the proposed
and final rule preambles. See the
Economic Analysis and the Supporting
Statement for the Information Collection
Request for the Clean Water Act Section
401 Certification Rule for further
discussion of available data.
Some commenters asserted the
proposed rule is arbitrary and
capricious because it is a reversal of
existing policy and that the Agency did
not provide adequate support for the
policy reversal. Some commenters
argued that when an agency undertakes
a new interpretation, it needs a factual
record on which to make such a change.
These commenters asserted that no
record exists in the proposed rule and
that no recognition of prior State and
EPA practice is evident. One commenter
argued that the EPA failed to provide a
valid, reasoned basis for departing from
decades of agency practice. Some
commenters also asserted that the
Agency did not demonstrate that the
existing regulations are inadequate or
explain how the proposed rule will
provide increased predictability in
comparison, noting that litigation over
section 401 denials falls short of a
reasoned explanation. These
commenters argued that the proposed
rule is just as likely to create more
confusion, unpredictability, and delay
given the sweeping changes that the
proposed rule seeks to implement. Some
commenters asserted that the EPA was
required to and has failed to conduct a
careful analysis of past certification
reviews to demonstrate the need for the
proposed rule. Some commenters
argued that the proposed rule does not
consider and analyze alternatives, as
these commenters assert the Agency is
required to do, particularly when it
proposes to reverse its policy, citing
State Farm, 463 U.S. at 46–48; Ctr. For
Science in the Pub. Interest v. Dep’t of
Treasury, 797 F.2d 995, 999 (D.C. Cir.
1986).
The Agency disagrees with these
commenters and concludes that its
justification in this rulemaking is more
than adequate. The Agency’s final rule
includes for the first time a well-defined
scope for State and Tribal review and
actions under section 401. As
articulated throughout the proposal and
this final rule preamble, the 1971
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42227
certification regulations were
promulgated to implement section 21(b)
of the 1970 FWPCA, not section 401 of
the 1972 CWA amendments. See section
II.F.3 of this notice. The 1972
amendments made two major changes
affecting the scope of the certification
requirement: It changed ‘‘activity’’ to
‘‘discharge’’ in section 401(a) and added
section 401(d), which describes effluent
limitations, other limitations, and
monitoring requirements that may be
included in a certification. These
important statutory elements were not
present or contemplated in the 1971
certification regulations, which the EPA
is updating with this final rule. It is
entirely appropriate, and necessary, for
the EPA to conform to the 1972 CWA
amendments when updating its almost
50-year-old certification regulations. As
noted throughout the proposal preamble
and the Economic Analysis, the EPA
acknowledges that many certifications
reflect an appropriately limited
interpretation of the purpose and scope
of section 401 and are issued without
controversy. Although a few high profile
certification denials are part of the
factual and administrative record for
this rulemaking, and EPA has
considered these facts during the
rulemaking process, the EPA has not
relied on these facts as the sole or
primary basis for this rulemaking. The
Agency’s longstanding failure to update
its regulations created the confusion and
regulatory uncertainty that were
ultimately the cause of those
controversial section 401 certification
actions and the resulting litigation. To
illustrate the type of uncertainty this
rule is attempting to resolve, recent
court cases indicate that some project
proponents, certifying authorities and
federal agencies have different ideas
about when the time for review of a
certification begins and—once begun—
whether the review period can be tolled
or extend beyond one year. See Hoopa
Valley Tribe v. FERC, 913 F.3d 1099
(D.C. Cir. 2019); New York State Dep’t
of Envtl. Conservation v. FERC, 884 F.3d
450 (2d Cir. 2018); Constitution Pipeline
Co., LLC v. New York State Dep’t of
Envtl. Conservation, 868 F.3d 87 (2d Cir.
2017). Questions have also arisen
regarding the role of the federal agency
in determining whether a waiver has
occurred. Millennium Pipeline Co. v.
Seggos, 860 F. 3d 696 (D.C. Cir. 2017).
Recent litigation also raises the issue of
a certifying authority’s ability to deny
certification for other than water
quality-related reasons. See Lighthouse
Resources, Inc. v. Inslee, No. 3:18–cv–
5005 (W.D. Wash. filed Jan. 8, 2018).
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This rule updates the EPA’s
regulations to be consistent with the
language of section 401 as enacted in
1972. The final rule, while focused on
the relevant statutory provisions and
case law interpreting those provisions,
is informed by the Agency’s expertise
developed over nearly 50 years of
implementing the CWA and policy
considerations where necessary to
address certain ambiguities in the
statutory text. For the first time, this
final rule aligns the EPA’s regulations
with the 1972 amendments and
provides clarity to certifying authorities,
federal licensing and permitting
agencies, project proponents, and the
general public.
Other commenters asserted that the
proposed rule is carrying out the
direction given by the Executive Order
to stop States from ‘‘hindering the
development of energy infrastructure’’
and asserted that administrative action
with such a predestined result should
not be afforded the level of deference
typically afforded. Certain commenters
also cited Watt v. Alaska, 451 U.S. 259,
273 (1981), and General Electric Co. v.
Gilbert, 429 U.S. 125, 143 (1976), to
argue that the EPA is overturning fifty
years of practice under the CWA in
violation of the clear language of 33
U.S.C. 1251(b), 33 U.S.C. 1341, and 33
U.S.C. 1370; and asserted that the EPA
is entitled to less deference when
overturning past practice.
The Agency disagrees that this
rulemaking result was predetermined by
the Executive Order. As discussed in
this final rule preamble, the Executive
Order does not specify details about
what the regulation must say, deferring
to the Agency and its technical
expertise, as informed by public input,
to develop a regulation consistent with
the CWA. The EPA issued a proposed
rule, received public comment on that
rule, made changes in this final rule in
response to comments and to increase
clarity and regulatory certainty for the
section 401 certification process, and
explained the basis for these changes.
None of that was predetermined. The
EPA further disagrees with commenters’
assertions that either the proposed rule
or this final rule violates the CWA. As
described throughout this notice, the
EPA for the first time conducted a
holistic analysis of the text, structure,
and history of CWA section 401. The
final rule is based on this holistic
analysis and is consistent with the
language and congressional intent of
section 401 and is informed by
important policy considerations and the
Agency’s expertise. Commenter’s
reliance on Watt v. Alaska, 451 U.S. 259
273, (1981), and General Electric Co. v.
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Gilbert, 429 U.S. 125, 143 (1976), is
misplaced because both decisions predate Chevron and Brand X. As described
in section II.F.5 above, EPA has
undertaken this rulemaking in
accordance with key principles of
administrative law, respecting
unambiguous terms of the CWA and
interpreting ambiguous language in
section 401 consistent with
congressional intent. The EPA’s
approach and rationale are set out in
detail in the proposal and this final rule
preamble and are supported by
applicable Supreme Court precedent.
d. Rulemaking Authority
Several commenters cited A.L.A.
Schechter Poultry Corp. v. United
States, 295 U.S. 495, 537–38 (1935), and
argued that the proposed rule is
unconstitutional because it reflects the
executive branch legislating absent
congressional delegation to do so. One
commenter asserted that federal
executive agencies have no inherent
authority to make law and are subject to
the legislative powers of the Congress.
This commenter cited Louisiana Pub.
Serv. Comm’n v. FCC, 476 U.S. 355, 374
(1986), and argued that agency authority
is limited to the authority granted by
Congress, and that the EPA cannot add
conditions outside the scope of the
CWA for which Congress provided.
Other commenters asserted that by
seeking to limit how States exercise
their authority under section 401, the
proposed rule would exceed the
Agency’s statutory authority ‘‘to
prescribe such regulations as are
necessary to carry out [the EPA
Administrator’s] functions under [the
Clean Water Act]’’ (33 U.S.C. 1361(a))
and would instead intrude upon the
‘‘responsibilities and rights’’ Congress
expressly reserved to the States. See 33
U.S.C. 1251(b). Other commenters
agreed with the proposal, stating that
the EPA is tasked with promulgating
rules for the implementation of the
CWA, including one commenter citing
Alabama Rivers Alliance v. FERC, 325
F.3d 290, 296–97 (2003).
The EPA agrees that the section 401
rulemaking must be consistent with the
CWA and the EPA’s authority under the
Act, but disagrees with commenters
who asserted that the proposal or this
final rule exceeded that authority.
Section 501 of the CWA gives the
Administrator the authority to adopt
rules ‘‘as are necessary to carry out his
functions under this chapter.’’ 33 U.S.C.
1361(a). Section 101(d) of the CWA
expressly provides that the
Administrator shall administer the
CWA. 33 U.S.C. 1251(d). Section 401 of
the CWA includes responsibilities for
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the Administrator to issue certifications
when a State or interstate agency has no
authority to issue a certification under
section 401(a)(1), to ensure the
protection of other States’ waters under
section 401(a)(2), and to provide
technical assistance under section
401(b). Section 304(h) of the CWA also
specifically directs the EPA to
‘‘promulgate guidelines establishing test
procedures for the analysis of pollutants
that shall include the factors which
must be provided in any certification
pursuant to section 401 of this Act.’’ 33
U.S.C. 1314(h) (setting April 1973
deadline for doing so). The EPA is doing
so with this final rule.
To carry out its functions under
section 401, the EPA must adopt rules
that ensure transparency and
accountability for actions taken under
section 401. This includes defining the
scope of section 401 and adopting
appropriate procedures to implement
the timing, public notice and other
requirements in section 401. Upon
examination of the language of section
401, the relevant case law and
legislative history, the Agency
recognizes that section 401 contains
some ambiguities and lacks clarity in
some sections. The Administrator’s role
under section 101(d), as the person
charged with administering the CWA,
includes adopting reasonable
interpretations of the statute to resolve
ambiguities and provide clarity. For
example, because CWA section 304(h)
requires the Administrator to develop
guidelines that ‘‘shall include the
factors that must be provided’’ in any
CWA section 401 certification, the EPA
appropriately interprets that provision
as authorizing the Administrator to
identify ‘‘factors’’ that may not be
included in a certification. The final
rule presents a reasonable interpretation
of the scope of section 401, which, given
the ambiguities in sections 401(a) and
401(d), is properly the subject of Agency
interpretation. The final rule also
requires certification conditions and
denials to be within that scope and that
certain information be included in a
certification or denial to support the
action. These substantive and
procedural regulations are necessary for
the Administrator to act as a certifying
authority, to administer section 401
provisions related to neighboring
jurisdictions, and to provide technical
assistance to other certifying authorities,
federal agencies, and project
proponents.
Other commenters objected to the
proposed rule, asserting that it would
disrespect the separation of powers by
not implementing the will of Congress
as expressed in the CWA. U.S. Const.
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art. II, § 3. As discussed throughout this
notice, the proposed rule was consistent
with statutory language of the CWA and
congressional intent, and this final rule
appropriately implements the will of
Congress as expressed in the CWA.
One commenter questioned the EPA’s
claim that it has the power to alter
‘‘unwise’’ judicial decisions. A few
commenters stated that Chevron
deference does not give a federal agency
the power to rewrite federal law, and
they asserted, citing INS v. CardozoFonseca, 480 U.S. 421 (1987); Adams
Fruit Co. v. Barrett, 494 U.S. 638, 649–
650 (1990); Encino Motorcars, LLC. v.
Navarro, 136 S. Ct. 2117 (2016); and
Kisor v. Wilkie, 139 S. Ct. 2400, 2417
(2019), that the proposed rule falls
outside the scope of Chevron deference.
A few commenters argued that the
proposal’s ‘‘holistic’’ review
inappropriately found ambiguity in the
statutory language to justify drastic
changes to the federal-State relationship
that section 401 established. These
commenters argued that instances
where federal authority is encroaching
on State authority warrant heightened
concern, citing SWANCC, 531 U.S. 159,
173 (2001), and asserted that any
changes must be based on a clear
statement from Congress.
Other commenters stated that the
divergent language of section 401(a) and
section 401(d) creates ambiguity that
needs to be resolved. These commenters
argued that the EPA’s proposed
interpretation is reasonable and
necessary to fill that statutory gap. One
commenter stated that the EPA correctly
recognized that the Court’s reliance on
Chevron deference in PUD No. 1 was
entirely misplaced, as the Court did not
begin by first identifying an ambiguity
in the statute, and the Court ignored the
fact that the EPA’s own regulations at
the time spoke only in terms of
‘‘discharges.’’ A number of commenters
agreed with the EPA’s proposal to
address the ambiguities in the CWA
statutory language and the inconsistent
application of the current regulations
that impact project applicants and other
States’ sovereignty. These commenters
agreed that the proposed rule would
promote regulatory certainty, help
streamline the federal licensing and
permitting process for critical
infrastructure development, enhance the
ability of project proponents to plan for
construction, and facilitate early and
constructive engagement between
permittees, States or authorized Tribes,
and federal agencies to ensure that
proposed projects will be protective of
local water quality.
As discussed in section II.F.5 of this
notice, Chevron supplies the
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appropriate framework for judicial
review of statutory interpretation. If the
language of a congressional statute is
clear, that unambiguous meaning
controls. If, however, the congressional
text is ambiguous, a reviewing court
will defer to the implementing Agency’s
permissible interpretation. Where, as in
CWA section 401(a), Congress used
unambiguous terms like ‘‘which shall
not exceed one year’’ and ‘‘after the
receipt of such request,’’ it is reasonable,
indeed necessary, for the Agency to
apply the plain meaning of those terms
when drafting its implementing
regulations. Where terms are
ambiguous, such as ‘‘other appropriate
requirement of State law’’ in CWA
section 401(d), the EPA is authorized to
fill the congressional gap and supply a
reasonable interpretation. Brand X
supports the EPA’s authority to interpret
ambiguous terms in section 401 and its
ability to make reasonable regulatory
choices. That case recognizes that an
Agency’s statutory interpretation is
precluded only when, in a prior
decision, a court concluded that its
contrary interpretation was compelled
by the plain language of the relevant
text. Brand X, 545 U.S. at 982 (‘‘[A]
court’s prior judicial construction of a
statute trumps an agency construction
otherwise entitled to Chevron deference
only if the prior court decision holds
that its construction follows from the
unambiguous terms of the statute and
thus leaves no room for agency
discretion.’’). None of the EPA
interpretations upon which its final
regulatory language is based, including
the Agency’s decision that section
401(d) limitations and requirements
may be placed only on the ‘‘discharge’’
and not on the ‘‘activity,’’ are
inconsistent with that principle.
G. Legal Construct for the Final Rule
As the preceding discussion
demonstrates, the most challenging
aspects of section 401 concern the scope
of review and action on a certification
request. The Agency is finalizing a
regulation that will clarify these aspects
and provide additional regulatory
certainty for States, Tribes, federal
agencies, and project proponents on the
timing and procedural requirements of
the CWA. This section summarizes
some of the core legal principles that
inform this final rule, and section III of
this notice describes how the Agency is
applying those legal principles to
support the final rule.
1. Scope of Certification
The EPA has for the first time
conducted a holistic analysis of the text,
structure, and history of CWA section
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42229
401. As a result of that analysis, the EPA
is establishing the scope of section 401
as protecting the quality of waters of the
United States from point source
discharges associated with federally
licensed or permitted activities by
requiring compliance with water quality
requirements, as defined in this final
rule.
Since at least 1973, the EPA has
issued memoranda and guidance
documents, and the Department of
Justice has filed briefs in various court
cases on behalf of the EPA, addressing
section 401. Only a handful of these
documents address the scope of section
401, and none was the product of a
holistic examination of the statute or its
legislative history. As a result, these
documents included little or no
explanation for the Agency’s
interpretations. For example, in 1989,
the EPA issued a guidance document
asserting that a section 401 certification
could broadly address ‘‘all of the
potential effects of a proposed activity
on water quality—direct and indirect,
short and long term, upstream and
downstream, construction and
operation. . . .’’ EPA, Wetlands and
401 Certification 23 (April 1989). The
guidance document’s only explanation
for this assertion is a reference to
section 401(a)(3), which provides that a
certification for a construction permit
may also be used for an operating
permit that requires certification. The
guidance document, which did not
undergo notice and comment
procedures, does not provide any
analysis to support its assertion that a
certification could address all potential
impacts from the ‘‘proposed activity’’ as
opposed to the discharge. Several years
later, the United States filed an amicus
brief in the Supreme Court on behalf of
the EPA in the PUD No. 1 case. The
amicus brief asserted that petitioners
were ‘‘mistaken’’ in their contention
that the State’s minimum flow condition
is outside the scope of section 401
because the condition would be valid
‘‘if it is necessary to assure that
discharges resulting from the project
will comply with applicable provisions
of the CWA or ‘any other appropriate
requirement of State law.’ ’’ See Brief for
the United States as Amicus Curiae
Supporting Affirmance, PUD No. 1 of
Jefferson County v. Washington Dep’t of
Ecology, No. 92–1911 at 11–12 (Dec.
1993) (emphasis added). The brief went
on to identify ‘‘two distinct discharges’’
that would result from the petitioner’s
facility and that would violate the CWA.
The amicus brief did not offer an
affirmative interpretation to harmonize
the different language in sections 401(a)
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and 401(d) and instead relied on the
plain language in section 401(a). More
than a decade later, the United States’
Supreme Court amicus brief in the S.D.
Warren case adopted without
explanation the Supreme Court’s
analysis in PUD No. 1 that once section
401 is triggered by a discharge, a
certification can broadly cover impacts
from the entire activity. Finally, in 2010,
the EPA issued its now-rescinded
Interim Handbook, which included a
number of recommendations on scope,
timing, and other issues, none of which
were supported with robust analysis or
interpretation of the Act. The Interim
Handbook, which did not undergo
notice and comment procedures either,
also did not reference the fact that the
1971 certification regulations were not
updated after the CWA was enacted in
1972.
This rulemaking is the first time that
the EPA has undertaken a holistic
review of the text of section 401 in the
larger context of the structure and
legislative history of the 1972 Act and
earlier federal water protection statutes,
and the first time the Agency has
subjected its analysis to public notice
and comment. The final rule is informed
by this holistic review and presents a
framework that the EPA considers to be
most consistent with the text of the Act
and congressional intent. After
considering and taking into account the
comments submitted on the proposed
rule, the Agency has made some
enhancements in this final rule to
appropriately capture the scope of
authority for granting, conditioning,
denying, and waiving a section 401
certification. For further discussion and
response to comments on the scope of
certification, see section III.E of this
notice.
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a. Water Quality
The EPA concludes that the scope of
a State’s or Tribe’s section 401 review or
action is not unbounded and must be
limited to considerations of water
quality. Clarifying the proper scope in
this manner aligns with the objective of
the CWA to restore and maintain water
quality (see CWA section 101(a))
Moreover, there is no suggestion in
either the plain language or the
structure of the statute that Congress
envisioned section 401 to authorize
action beyond that which is necessary to
address water quality directly. Indeed,
as described in greater detail above, the
1972 amendments to the CWA resulted
in the enactment of a comprehensive
scheme designed to prevent, reduce,
and eliminate pollution in the nation’s
waters generally, and to regulate the
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discharge of pollutants into waters of
the United States specifically.
In its recent decision in County of
Maui, Hawaii v. Hawaii Wildlife Fund,
et al., No. 18–260, the Supreme Court
reaffirmed that ‘‘Congress’ purpose as
reflected in the language of the Clean
Water Act is to ‘restore and maintain the
. . . integrity of the Nation’s waters,’
§ 101(a)’’ (Op. at 2, emphasis added) and
underscored the importance of
interpreting the statutory text ‘‘in light
of the statute’s language, structure, and
purposes’’ in a manner that avoids the
creation of ‘‘a massive loophole in the
permitting scheme that Congress
established’’ that would ‘‘allow[ ] easy
evasion of the statutory provision’s
basic purposes.’’ (Op. at 12, 15 (April
23, 2020)). The EPA’s interpretation of
the scope of CWA section 401 as limited
to considerations of water quality is
fully consistent with these fundamental
principles and respects the
congressional scheme at issue in County
of Maui. As discussed below and
throughout the preamble, this is also
true of the Agency’s other textual
interpretations that inform the
definitions and requirements of this rule
relating to, for example, ‘‘discharge,’’ ‘‘a
reasonable period of time (which shall
not exceed one year,’’ ‘‘water quality
requirements,’’ and ‘‘any other
appropriate requirement of State law.’’
The EPA is aware that some certifying
authorities may have previously
interpreted the scope of section 401 in
a way that resulted in the incorporation
of non-water quality-related
considerations into their certification
review process. For example, certifying
authorities have on occasion required in
a certification condition the
construction of biking and hiking trails,
requiring one-time and recurring
payments to State agencies for
improvements or enhancements that are
unrelated to the proposed federally
licensed or permitted project, and the
creation of public access for fishing
along waters of the United States.
Certifying authorities have also
attempted to address all potential
environmental impacts from the
creation, manufacture, or subsequent
use of products generated by a proposed
federally licensed or permitted activity
or project that may be identified in an
environmental impact statement or
environmental assessment, prepared
pursuant to the NEPA or a State law
equivalent. This includes, for example,
consideration of impacts associated
with air emissions and transportation
effects.
The Agency has concluded that
interpreting the scope of section 401 to
allow States and Tribes to regulate and
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consider effects of an activity rather
than a discharge would invoke the outer
limits of power that Congress delegated
to the Agency under the CWA. The
imposition of conditions unrelated to
water quality is not consistent with the
scope of the CWA generally or section
401. There is nothing in the text of the
statute or its legislative history that
signals that Congress intended to
impose, using section 401, federal
requirements on licensed or permitted
activities beyond those addressing water
quality-related impacts. Indeed,
Congress knows how to craft statutes to
require consideration of multi-media
effects (see, e.g., NEPA), and has
enacted specific statutes addressing
impacts to air (Clean Air Act), wildlife
(Endangered Species Act), and cultural
resources (National Historic
Preservation Act), by way of example.23
Subsequent congressional action
directly addressing a particular subject
is relevant to determining whether a
previously adopted statute reaches that
subject matter. See FDA v. Brown &
Williamson Tobacco Corp., 529 U.S.
120, 155 (2000) (determining that
‘‘actions by Congress over the past 35
years’’ that addressed tobacco directly,
when ‘‘taken together,’’ ‘‘preclude[d] an
interpretation’’ that a previously
adopted statute, the Food, Drug, and
Cosmetic Act, ‘‘grant[ed] the FDA
jurisdiction to regulate tobacco
products.’’).
If Congress had intended section 401
of the CWA to authorize consideration
or the imposition of certification
conditions based on air quality or
transportation concerns, public access
to waters, energy policy, or other multimedia or non-water quality impacts, it
would have provided a clear statement
to that effect. Neither the CWA nor
section 401 contains any such clear
statement. In fact, Congress specifically
contemplated a broader policy direction
in the 1972 amendments that would
have authorized the EPA to address
impacts to land, air, and water through
implementation of the CWA, but it was
rejected.24 The Agency has concluded
23 See, e.g., 42 U.S.C. 4321 et seq. (NEPA); 42
U.S.C. 7401 et seq. (Clean Air Act); 16 U.S.C. 1531
et seq. (Endangered Species Act); and 16 U.S.C. 470
et seq. (National Historic Preservation Act).
24 As Congress drafted the 1972 CWA
amendments, the House bill (H.R. 11896) included
section 101(g) within its ‘‘Declaration of Goals and
Policy’’ providing, ‘‘(g) In the implementation of
this Act, agencies responsible therefor shall
consider all potential impacts relating to the water,
land, and air to insure that other significant
environmental degradation and damage to the
health and welfare of man does not result.’’ H.R.
11896, 92nd Cong. (1971) (emphasis added).
Section 101(g) of the House bill was ‘‘eliminated’’
at conference, and the Act was ultimately passed
with no federal policy, goal, or directive to address
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that inclusion of the phrase ‘‘any other
appropriate requirement of State law’’ in
section 401(d) hardly provides clear
direction from Congress that section
401(d) could extend beyond water
quality. Therefore EPA concludes that
section 401(d)—like section 401(a) and
the rest of the Act—is limited to
considerations of ‘‘water quality.’’ 25
Pursuant to the plain language of
section 401, when a State or authorized
Tribe (and in some cases, the EPA)
issues a certification, it has determined
that the discharge into waters of the
United States from a proposed federally
licensed or permitted activity will
comply with applicable effluent
limitations for new and existing sources
(CWA sections 301, 302, and 306), water
quality standards and implementation
plans (section 303), toxic pretreatment
effluent standards (section 307), and—
by way of its power to add conditions
pursuant to section 401(d)—other
‘‘appropriate requirements’’ of State or
Tribal law. 33 U.S.C. 1341(a)(1), (d). The
enumerated CWA provisions identify
requirements to ensure that discharges
of pollutants do not degrade water
quality,26 and specifically referenced
throughout section 401 is the
requirement to ensure compliance with
‘‘applicable effluent limitations’’ and
‘‘water quality requirements,’’
underscoring the focused intent of this
provision on the protection of water
quality from discharges.27 See 33 U.S.C.
1341(a), (b), (d). The legislative history
for the Act provides further support for
non-water quality impacts through the CWA. S.
Rep. 92–1236, at 100 (1972) (Conf. Rep.).
25 The Agency also concludes that the term
‘‘applicant’’ in section 401(d) creates ambiguity in
the statute. See section II.G.1.b of this notice for
discussion of the use of the term ‘‘applicant’’ in
section 401(d).
26 For example, CWA section 306 defines the
standard of performance for new sources of
discharges as ‘‘a standard for the control of the
discharge of pollutants which reflects the greatest
degree of effluent reduction which the
Administrator determines to be achievable through
application of best available demonstrated control
technology, processes, operating methods, or other
alternatives, including, where practicable, a
standard permitting no discharge of pollutants.’’ 33
U.S.C. 1316(a)(1). Section 303 notes that new or
revised state water quality standards ‘‘[s]hall be
such as to protect the public health or welfare,
enhance the quality of water and serve the purposes
of this chapter.’’ Id. at 1313(c)(2)(A).
27 The term ‘‘effluent limit’’ is defined as, ‘‘any
restriction established by a State or the
Administrator on quantities, rates, and
concentrations of chemical, physical, biological,
and other constituents which are discharged from
point sources into navigable waters, the waters of
the contiguous zone, or the ocean, including
schedules of compliance[,]’’ 33 U.S.C. 1362(11); and
the CWA requires that ‘‘water quality standards’’
developed by states and tribes ‘‘consist of the
designated uses of the navigable waters involved
and the water quality criteria for such waters based
upon such uses.’’ Id. at 1313(c)(2)(A).
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the EPA’s interpretation, as it frequently
notes that the focus of the section is on
assuring compliance with water quality
requirements and water quality
standards and the elimination of any
discharges of pollutants. See, e.g., S.
Rep. No. 92–414, at 69 (1971).
The CWA does not define what is an
‘‘appropriate requirement’’ of State law
for purposes of adding conditions to a
section 401 certification.28 In
interpreting this term, the Agency
acknowledges the need to respect the
clear policy direction from Congress to
recognize and preserve State authority
over land and water resources within
their borders, see 33 U.S.C. 1251(b), and
the Agency must avoid interpretations
of the CWA that infringe on traditional
State land use planning authority. See
SWANCC, 531 U.S. at 172–73; Will, 491
U.S. at 65. One interpretation of this
clause in section 401(d) could be that it
authorizes the denial of certification or
the imposition of conditions in a federal
license or permit based on non-water
quality-related impacts if those
requirements are based on any existing
State or Tribal law. Such an
interpretation, however, is
counterintuitive in a statute aimed at
protecting the ‘‘chemical, physical, and
biological integrity of the nation’s
waters.’’ For example, it is difficult to
imagine what guiding principle would
help one determine whether to import
state labor law or professional licensing
requirements into a section 401
certification; such requirements could
arguably be relevant to a dam project,
but mere relevance is not nearly
sufficient to sweep these types of laws
within the ambit of an environmental
statute aimed at water quality. The CWA
does not give EPA a clear basis to
venture into such regulatory arenas,
which (in the absence of clearly
expressed congressional direction) are
more appropriately reserved to the
powers of the States, ‘‘powers with
which Congress does not readily
interfere.’’ Gregory, 501 U.S. at 461
(describing the ‘‘plain statement rule’’).
The Agency does not believe that
Congress intended the phrase ‘‘any
other appropriate requirement of State
law’’ to be read so broadly. Instead, the
ejusdem generis canon helps to inform
the appropriate interpretation of the
statutory text. Under this principle,
where general words follow an
enumeration of two or more things, they
EPA notes that during congressional
hearings on the 1972 amendments, the House
Committee was presented with testimony that the
term ‘‘applicable water quality requirements’’
should be defined, but no definition was included
in the enacted bill. See section III.E.2.b for further
discussion on this legislative history.
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42231
apply only to things of the same general
kind or class specifically mentioned.
See Wash. State Dept. of Social and
Health Services v. Keffeler, 537 U.S.
371, 383–85 (2003). Here, the general
term ‘‘appropriate requirement’’ in
section 401(d) follows an enumeration
of four specific sections of the CWA that
are all focused on the protection of
water quality from point source
discharges to waters of the United
States.29 Given the text, structure,
purpose, and legislative history of the
CWA and section 401, and informed by
important policy considerations and the
Agency’s expertise, the EPA interprets
‘‘appropriate requirement’’ for section
401 certification purposes to include
those provisions of State or Tribal law
that contain requirements for point
source discharges into waters of the
United States, including provisions that
are more stringent than federal law. See
S. Rep. No. 92–414, at 69 (1971) (‘‘In
addition, the provision makes clear that
any water quality requirements
established under State law, more
stringent than those requirements
established under the Act, shall through
certification become conditions on any
Federal license or permit.’’). In this
respect, the EPA agrees with the logic of
Justice Thomas’s dissent in PUD No. 1,
wherein he concludes that ‘‘the general
reference to ‘appropriate’ requirements
of State law is most reasonably
construed to extend only to provisions
that, like other provisions in the list,
impose discharge-related restrictions.’’
PUD No. 1, 511 U.S. at 728 (Thomas, J.,
dissenting). The Agency’s interpretation
gives meaning to Congress’s decision to
use the word ‘‘appropriate’’ in the
phrase ‘‘any other appropriate
requirement of State law set forth in
such certification.’’
Consistent with the proposal, the final
rule limits the scope of section 401 and
the term ‘‘appropriate requirements of
State law’’ to those requirements
directly related to water quality. As
discussed in greater detail in section
III.E.2.b of this notice, the final rule
definition of ‘‘water quality
requirements’’ has been modified from
the proposal, but does not stray from the
core principle and focus of Title IV of
the CWA—to protect the quality of
waters of the United States from point
source discharges.
29 See Section II.G.1.c for further discussion on
point source discharges to waters of the United
States in the context of section 401. Although
section 401(a) mentions five sections of the CWA,
section 401(d) omits section 303. In PUD No. 1, the
Court interpreted section 303 to be included in
section 401(d) by reference to section 301. PUD No.
1, 511 U.S. at 712–13.
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b. Activity or Discharge
Based on the text, structure, and
legislative history of the CWA, the EPA
is affirming under this final rule that a
certifying authority’s review and action
under section 401 must be limited to
water quality impacts from the potential
discharge associated with a proposed
federally licensed or permitted project.
Section 401(a) explicitly provides that
the certifying authority, described as
‘‘the State in which the discharge
originates or will originate,’’ must
certify that ‘‘any such discharge will
comply with the applicable provisions
of sections 301, 302, 303, 306, and 307
of this Act’’ (emphasis added). The
plain language of section 401(a)
therefore directs authorities to certify
that the discharge resulting from the
proposed federally licensed or
permitted project will comply with the
CWA. Section 401(d) uses different
language and requires the certifying
authority to ‘‘set forth any effluent
limitations and other limitations, and
monitoring requirements necessary to
assure that any applicant for a Federal
license or permit will comply with any
applicable effluent limitations and other
limitations, under section 301 or 302 of
this title, standard of performance under
section 306 of this title, or prohibition,
effluent standard, or pretreatment
standard under section 307 of this title,
and with any other appropriate
requirement of State law set forth in
such certification’’ (emphasis added).30
The use of the term ‘‘applicant’’ in
section 401(d)—instead of ‘‘discharge’’
as found in section 401(a)—creates
ambiguity, and has been interpreted as
broadening the scope of section 401(a),
beyond consideration of water quality
impacts from the ‘‘discharge’’ which
triggers the certification requirement, to
allow certification conditions that
address water quality impacts from any
aspect of the construction or operation
of the activity as a whole. See PUD No.
1, 511 U.S. at 712.
The ordinary meaning of the word
‘‘applicant’’ is ‘‘[o]ne who applies, as for
a job or admission.’’ See Webster’s II,
New Riverside University Dictionary
(1994). In section 401(d), this term is
used to describe the person or entity
that applied for the federal license or
permit that requires a certification. The
use of this term in section 401(d) is
consistent with the text of the CWA,
which uses the term ‘‘applicant’’
throughout to describe an individual or
30 As a matter of practice, the Corps seeks State
certification for ‘‘its own discharges of dredged or
fill material,’’ ‘‘[a]lthough the Corps does not
process and issue permits for its own activities.’’ 33
CFR 336.1(a)(1).
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entity that has applied for a grant, a
permit, or some other authorization.31
Importantly, the term is also used in
section 401(a) to identify the person
responsible for obtaining the
certification: ‘‘Any applicant for a
Federal license or permit to conduct any
activity including, but not limited to,
the construction or operation of
facilities, which may result in any
discharge into the navigable waters,
shall provide the licensing or permitting
agency a certification from the State
. . . .’’ In the section 401 context, the
term ‘‘applicant’’ also may include in
some circumstances the federal
licensing or permitting agency, such as
where the federal agency is seeking
certification for a general license or
permit.
Relying on the presence of the term
‘‘applicant’’ in section 401(d) to
interpret section 401(d) as allowing
certification conditions that are
unrelated to a discharge would expand
section 401 regulatory authority beyond
the scope of those sections of the Act
enumerated in section 401. Those
enumerated CWA sections focus on
regulating discharges to waters of the
United States. The Agency is not aware
of any other instance in which the term
‘‘applicant’’ (or permittee or owner or
operator) as used in the CWA has been
interpreted to significantly expand the
jurisdictional scope or meaning of the
statute. The Agency therefore
understands the term ‘‘applicant’’ in
section 401(d) as merely identifying the
person or entity responsible for
obtaining and complying with the
certification and any associated
conditions and not as expanding the
regulatory scope of that section. This
interpretation of the term ‘‘applicant,’’
which appropriately ties the term to the
discharges that are the regulatory focus
of section 401 as a whole and to the
purposes of this section, is consistent
with and supported by the use in
section 401(d) of the phrase ‘‘applicant
for a Federal license or permit,’ which
refers back to the fuller phrase set forth
at the beginning of section 401(a):
‘‘applicant for a Federal license or
permit to conduct any activity . . .
which may result in any discharge into
the navigable waters.’’ (Emphasis
added.) This interpretation also gives
31 See, e.g., 33 U.S.C. 1311 (‘‘An application for
an alternative requirement under this subsection
shall not stay the applicant’s obligation to comply
with the effluent limitation guideline or categorical
pretreatment standard which is the subject of the
application.’’); id. at 1344 (‘‘Not later than the
fifteenth day after the date an applicant submits all
the information required to complete an application
for a permit under this subsection, the Secretary
shall publish the notice required by this
subsection.’’)
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reasonable, and permissible, meaning to
the term ‘‘appropriate’’ in the phrase
‘‘any other appropriate requirement of
State law set forth in such certification.’’
The textual history and legislative
history of section 401, discussed below,
provide additional support for this
interpretation.
Section 401 was updated as part of
the 1972 CWA amendments to reflect
the restructuring of the Act, as described
in section II.F.1 of this notice. Two
important phrases were modified
between the 1970 and the 1972 versions
of section 401 that help explain what
Congress intended with the 1972
amendments. First, the 1970 version
provided that an authority must certify
‘‘that such activity . . . will not violate
water quality standards.’’ Public Law
91–224 § 21(b)(1) (emphasis added).
Significantly, Congress modified this
language in 1972, requiring an authority
to certify ‘‘that any such discharge shall
comply with the applicable provisions
of [the CWA].’’ 33 U.S.C. 1341(a)
(emphasis added). On its face, this
modification made the 1972 version of
section 401 consistent with the overall
framework of the amended statutory
regime, which focuses on regulating
discharges to attain water quality
standards and adds new federal
regulatory programs to achieve that
purpose. 33 U.S.C. 1311, 1312, 1313,
1316, 1317, 1342 and 1344.
Second, the 1972 version included
section 401(d) for the first time. This
provision authorizes conditions to be
imposed on a certification ‘‘to assure
that any applicant for a Federal license
or permit will comply with any
applicable effluent limitations and other
limitations, under section 301 or 302 of
this Act, standard of performance under
section 306 of this Act, or prohibition,
effluent standard, or pretreatment
standard under section 307 of this Act,
and with any other appropriate
requirement of State law set forth in
such certification . . . .’’Id. at 1341(d).
This new section also requires such
conditions to be included in the federal
license or permit. Id.
Together, these amendments to the
pre-1972 statute focus section 401 on
discharges that may affect water quality,
enumerate newly created federal
regulatory programs with which section
401 mandates compliance, and require
that water quality-related certification
conditions be included in federal
licenses and permits and thereby
become federally enforceable. The
legislative history describing these
changes supports a conclusion that the
provisions were added intentionally and
with the purpose of making the new
section 401 consistent with the new
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framework of the Act. Indeed, the 1971
Senate Report provided that section 401
was ‘‘amended to assure consistency
with the bill’s changed emphasis from
water quality standards to effluent
limitations based on the elimination of
any discharge of pollutants.’’ S. Rep. No.
92–414, at 69 (1971).
An EPA attorney previously analyzed
the modifications made to section 401
between the 1970 and 1972 Acts. See
Memorandum from Catherine A. Winer,
Attorney, EPA Office of General
Counsel, Water Division, to David K.
Sabock, North Carolina Department of
Natural Resources (Nov. 12, 1985).32 In
its analysis, the attorney characterized
the legislative history quoted above as
‘‘not very explicit,’’ and characterized
the new section 401 language as ‘‘not
altogether clear.’’ Id. Based on this
analysis, the attorney found at that time
that ‘‘the overall purpose of section 401
is clearly ‘to assure that Federal
licensing or permitting agencies cannot
override water quality requirements’ ’’
and that ‘‘section 401 may reasonably be
read as retaining its original [i.e., pre1972] scope, that is, allowing state
certifications to address any water
quality standard violation resulting from
an activity for which a certification is
required, whether or not the violation is
directly caused by a ‘discharge’ in the
narrow sense.’’ Id. (citing S. Rep. No.
92–414, at 69 (1971)).
The EPA has now performed a
holistic analysis of the text and
structure of the CWA, the language of
section 401, and the amendments made
between 1970 and 1972. Based on this
review, the EPA now concludes that the
1972 version of section 401 made
specific changes to ensure that
discharges were controlled in
compliance with the 1972 CWA
regulatory programs and appropriate
requirements of State law. For the
reasons noted above in section II.F.1 of
this notice, identifying and regulating
discharges, as opposed to managing
ambient water quality, promotes
accountability and enforcement of the
Act in a way that the 1970 and earlier
versions did not. The EPA also observes
that, had Congress intended the 1972
amendments to retain the original scope
concerning ‘‘activity,’’ it could have
easily crafted section 401(d) to authorize
certification conditions to assure that
‘‘the activity’’ would comply with the
specified CWA provisions, but it did
not. Instead, Congress’ use of the term
‘‘discharge’’ in section 401(a) frames the
scope of the certification requirement
32 Available at https://www.epa.gov/sites/
production/files/2015-01/documents/standardsmarinas-memo.pdf.
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under the Act. As a result, the Agency
now considers a more natural and more
reasonable interpretation of the 1972
amendments to be that Congress
rejected the idea that the scope of a
certifying authority’s review or its
conditions should be defined by the
term ‘‘activity.’’ Congress specifically
did not carry forward the term
‘‘activity’’ in the operative phrase in
section 401(a) and did not incorporate it
into the new provision authorizing
certification conditions in section
401(d). Under basic canons of statutory
construction, the EPA begins with the
presumption that Congress chose its
words intentionally. See, e.g., Stone v.
INS, 514 U.S. 386, 397 (1995) (‘‘When
Congress acts to amend a statute, we
presume it intends its amendment to
have real and substantial effect.’’). This
is also consistent with the dissent in
PUD No. 1, wherein Justice Thomas
concluded that ‘‘[i]t is reasonable to
infer that the conditions a State is
permitted to impose on certification
must relate to the very purpose the
certification process is designed to
serve. Thus, while § 401(d) permits a
State to place conditions on a
certification to ensure compliance of the
‘applicant’[,] those conditions must still
be related to discharges.’’ PUD No. 1,
511 U.S. at 726–27 (Thomas, J.,
dissenting). The EPA has concluded that
this interpretation is reasonable and the
most appropriate reading of the statute
and related legal authorities.
As described in detail in section
II.F.4.a.i of this notice, the Supreme
Court in PUD No. 1 considered the
scope of a State’s authority to condition
a section 401 certification. In response
to petitioners’ argument in that case that
certification conditions may only be
limited to the ‘‘discharge’’ referenced in
section 401(a), the Court noted that
‘‘[t]he text refers to the compliance of
the applicant, not the discharge.’’ Id. at
712. Without further analysis of the
ambiguity created by the use of the term
‘‘applicant’’ in section 401(d), the Court
concluded that ‘‘§ 401(d) is most
reasonably read as authorizing
additional conditions and limitations on
the activity as a whole once the
threshold condition, the existence of a
discharge, is satisfied.’’ Id. at 712. The
Court did not grapple with the range of
actions that its interpretation may
require of the applicant, or whether the
entire range would or should be within
the scope of section 401. The Court did
not evaluate or find support for its
interpretation in the legislative history
of the 1972 amendments to the CWA,
nor did the Court find that Congress had
established an intent that the term
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42233
‘‘applicant’’ in section 401(d) should
mean ‘‘activity.’’ Although some have
argued that the Court’s conclusion is
based on a plain language interpretation
of section 401(d), for the reasons
explained below, the EPA disagrees.
The EPA concludes that the use of the
term ‘‘discharge’’ in section 401(a) and
‘‘applicant’’ in section 401(d) creates
ambiguity, that the plain text of 401(d)
also is ambiguous, and that neither the
Court’s analysis nor its holding in PUD
No. 1 foreclose alternative
interpretations.
In its discussion of the CWA, the
Supreme Court in PUD No. 1 did not
analyze section 401 at ‘‘Chevron step
one’’ or rely on ‘‘the unambiguous
terms’’ of the CWA to support its
reading of section 401. See Brand X, 545
U.S. at 982. Instead, the Court
‘‘reasonably read’’ section 401(d) ‘‘as
authorizing additional conditions and
limitations on the activity as a whole
once the threshold condition, the
existence of a discharge, is satisfied.’’
PUD No. 1, 511 U.S. at 712 (emphasis
added). To support what it considered
to be a reasonable reading of section
401(d), the Court looked at the EPA’s
1971 certification regulations at 40 CFR
121.2(a)(3) and related guidance
available at that time, PUD No. 1, 511
U.S. at 712, but the Court did not have
before it the EPA’s interpretation of how
sections 401(a) and 401(d) could be
harmonized. In fact, the Court either
was not aware of or did not mention
that the EPA’s 1971 certification
regulations in place at that time
predated the 1972 CWA amendments
and therefore contained outdated
terminology implementing what was
functionally a different statute. As
described above, the EPA’s 1971
certification regulations were consistent
with the text of the pre-1972 CWA, and
they required a State to certify that the
‘‘activity’’ will comply with the Act.
The 1972 CWA amendments changed
this language to require a State to certify
that the ‘‘discharge’’ will comply with
the Act.
Based in part on what the EPA now
recognizes was infirm footing, the Court
found that ‘‘EPA’s conclusion that
activities—not merely discharges—must
comply with state water quality
standards is a reasonable interpretation
of § 401 and is entitled to deference.’’ Id.
(emphasis added). As amicus curiae in
the Supreme Court, the United States
did not seek Chevron ‘‘deference for the
EPA’s regulation in [the PUD No. 1
case]’’ or for the EPA’s interpretation of
section 401. Id. at 729 (Thomas, J.,
dissenting). In fact, the United States’
amicus brief for the Court did not
analyze or interpret the different
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language in sections 401(a) and 401(d)
and instead asserted that it was
unnecessary to harmonize the
provisions to resolve the dispute. See
Brief for the United States as Amicus
Curiae Supporting Affirmance, PUD No.
1 of Jefferson County v. Washington
Dep’t of Ecology, No. 92–1911 at 12 n.
2 (Dec. 1993). The amicus brief asked
the Court to analyze the two undisputed
discharges from the proposed federally
licensed project and to determine
whether they would cause violations of
the State’s water quality standards. Id. at
11–16.
Given the circumstances of the PUD
No. 1 litigation, and the fact that the
Supreme Court did not analyze section
401 under Chevron step 1 or rely on
unambiguous terms in the CWA to
support its interpretation of the statute,
PUD No. 1 does not foreclose the
Agency’s interpretation of section 401 in
this final rule. See Brand X, 545 U.S. at
982–83. The Supreme Court’s ‘‘choice of
one reasonable reading’’ of section 401
does not prevent the EPA ‘‘from later
adopting a different reasonable
interpretation.’’ 33 Eurodif S.A., 555 U.S.
at 315. An agency may engage in ‘‘a
formal adjudication or notice-andcomment rulemaking’’ to articulate its
interpretation of an ambiguous statute.
Christensen v. Harris County, 529 U.S.
576, 587 (2000). When it does, courts
apply ‘‘Chevron-style’’ deference to the
agency’s interpretation. Id. That is
exactly what the EPA is doing in this
final rule. The EPA has for the first time,
holistically interpreted the text of
sections 401(a) and 401(d) to support
this update to the Agency’s 1971
certification regulations while ensuring
consistency with the plain language of
the 1972 CWA.
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c. Discharges From Point Sources to
Waters of the United States
Based on the text, structure, and
purpose of the Act, the history of the
1972 CWA amendments, relevant
legislative history, and supporting case
law, and informed by important policy
considerations and the Agency’s
expertise, the EPA has concluded that a
certifying authority’s review and action
under section 401 is limited to water
quality impacts to waters of the United
States resulting from a potential point
33 The EPA is not modifying the Agency’s
longstanding interpretation of the Act that was
confirmed by the Court in PUD No. 1 that ‘‘a water
quality standard must ‘consist of the designated
uses of the navigable waters involved and the water
quality criteria for such waters based upon such
uses’ ’’ and that ‘‘a project that does not comply
with a designated use of the water does not comply
with the applicable water quality standards.’’ 511
U.S. at 714–15 (emphasis in original; quoting 33
U.S.C. 1313(c)(2)(A)).
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source discharge from a proposed
federally licensed or permitted project.
The text of section 401(a) clearly
specifies that certification is required for
any federal license or permit to
‘‘conduct any activity . . . which may
result in any discharge into the
navigable waters’’ (emphasis added).
Prior interpretations extending section
401 applicability beyond such waters
conflict with and would render
meaningless the plain language of the
statute. And although the statute does
not define with specificity the meaning
of the unqualified term discharge,
interpreting section 401 to cover all
discharges without qualification would
undercut the bedrock structure of the
CWA regulatory programs, which are
focused on addressing point source
discharges to waters of the United
States. CWA section 502(14) defines
‘‘point source’’ as ‘‘any discernible,
confined and discrete conveyance,
including but not limited to any pipe,
ditch, channel, tunnel, conduit, well,
discrete fissure, container, rolling stock,
concentrated animal feeding operation,
or vessel or other floating craft, from
which pollutants are or may be
discharged.’’ 34
As described in section II.F.1 of this
notice, the CWA is structured such that
the federal government provides
assistance, technical support, and grant
money to assist States in managing all
of the nation’s waters. By contrast, the
federal regulatory provisions, including
CWA sections 402 and 404, apply only
to point source discharges to waters of
the United States. 33 U.S.C. 1362(7).
Section 401 is the first section of Title
IV of the CWA, titled Permits and
Licenses, and it requires water qualityrelated certification conditions to be
legally binding and federally
enforceable conditions of federal
licenses and permits. Id. at 1341(d).
Similar to the section 402 and 404
permit programs, section 401 is a core
regulatory provision of the CWA.
Accordingly, the scope of its application
is most appropriately interpreted,
consistent with the other federal
regulatory programs, as addressing point
source discharges into waters of the
United States.
The EPA is not aware of any court
decisions that have directly addressed
the scope of waters covered by section
401; however, the plain text of section
401 is clear and EPA’s interpretation is
supported by legislative history (see
section II.G.1.b of this notice).
34 In the section 404 context, point sources
include bulldozers, mechanized land clearing
equipment, dredging equipment, and the like. See,
e.g., Avoyelles Sportsmen’s League, Inc. v. Marsh,
715 F.2d 897, 922 (5th Cir. 1983).
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Additionally, public commenters noted
that many state Attorneys General
submitted comments on the Agency’s
rulemaking to define ‘‘waters of the
United States’’ asserting that modifying
that definition would modify the scope
of state review under section 401,
further supporting the EPA’s
interpretation that section 401 is limited
to waters of the United States.
In Oregon Natural Desert Association
v. Dombeck, the Ninth Circuit relied on
the text and structure of section 401 to
interpret the meaning of ‘‘discharge’’ in
section 401. 172 F.3d 1092 (9th Cir.
1998). In that case, a citizen’s
organization challenged a decision by
the U.S. Forest Service to issue a permit
to graze cattle on federal lands without
first obtaining a section 401 certification
from the State of Oregon. The
government argued that a certification
was not needed because the
‘‘unqualified’’ term ‘‘discharge’’—as
used in CWA section 401—is ‘‘limited
to point sources but includes both
polluting and nonpolluting releases.’’
Id. at 1096. Finding that the 1972
amendments to the CWA ‘‘overhauled
the regulation of water quality,’’ the
court said that ‘‘[d]irect federal
regulation [under the CWA] now
focuses on reducing the level of effluent
that flows from point sources.’’ Id. The
court stated that the word ‘‘discharge’’
as used consistently in the CWA refers
to the release of effluent from a point
source. Id. at 1098. The court found that
cattle—even if they wade in a stream—
are not point sources. Id. at 1098–99.
Accordingly, the court held that
certification under section 401 was not
required. Id. at 1099.
The EPA previously suggested that
the scope of section 401 may extend to
nonpoint discharges to non-federal
waters 35 once the requirement for the
section 401 certification is triggered.
Specifically, in the EPA’s nowwithdrawn Interim Handbook, the
Agency included the following
paragraphs,
The scope of waters of the U.S. protected
under the CWA includes traditionally
navigable waters and also extends to include
territorial seas, tributaries to navigable
waters, adjacent wetlands, and other waters.
Since § 401 certification only applies where
there may be a discharge into waters of the
U.S., how states or tribes designate their own
waters does not determine whether § 401
certification is required. Note, however, that
once § 401 has been triggered due to a
potential discharge into a water of the U.S.,
additional waters may become a
consideration in the certification decision if
it [sic] is an aquatic resource addressed by
35 Non-federal waters refer to those waters that are
not waters of the United States.
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‘‘other appropriate provisions of state [or
tribal] law.’’
*
*
*
*
*
Section 401 applies to any federal permit
or license for an activity that may discharge
into a water of the U.S. The Ninth Circuit
Court of Appeals ruled that the discharge
must be from a point source, and agencies in
other jurisdictions have generally adopted
the requirement. Once these thresholds are
met, the scope of analysis and potential
conditions can be quite broad. As the U.S.
Supreme Court has held, once § 401 is
triggered, the certifying state or tribe may
consider and impose conditions on the
project activity in general, and not merely on
the discharge, if necessary to assure
compliance with the CWA and with any
other appropriate requirement of state or
tribal law.
Interim Handbook, 5, 18 (citations
omitted). To support the first referenced
paragraph on the scope of waters, the
Interim Handbook cited section 401(d),
presumably referring to the use of the
term ‘‘applicant’’ rather than
‘‘discharge’’ used in section 401(a).36 To
support the second paragraph on the
scope of discharges, the Interim
Handbook cited the PUD No. 1 and S.D.
Warren Supreme Court decisions. It
appears that both paragraphs from the
Agency’s Interim Handbook relied on
the PUD No. 1 Court’s interpretation of
the ambiguity created by the different
language in sections 401(a) and
401(d).37
For many of the same reasons why the
Agency is not interpreting the use of the
word ‘‘applicant’’ in section 401(d) as
broadening the scope of certification
beyond the discharge itself, the Agency
is also declining to interpret section
401(d) as broadening the scope of waters
and the types of discharges to which the
CWA federal regulatory programs apply.
As an initial matter, the Agency agrees
with the Ninth Circuit’s analysis and
holding in Dombeck that section 401
certification is not required for nonpoint
source discharges. Oregon Natural
Desert Association v. Dombeck, 172
F.3d 1092, 1098–99 (9th Cir. 1998).
Were the Agency to interpret the use in
section 401(d) of the term ‘‘applicant’’
instead of the term ‘‘discharge’’ as
authorizing the federal government to
implement and enforce CWA conditions
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36 Interim
Handbook, at 5 n. 23. Tellingly,
footnote 23 of the Interim Handbook also states,
‘‘Note that the Corps may consider a 401
certification as administratively denied where the
certification contains conditions that require the
Corps to take an action outside its statutory
authority or are otherwise unacceptable. See, e.g.,
RGL 92–04, ‘Section 401 Water Quality Certification
and Coastal Zone Management Act Conditions for
Nationwide Permits.’’
37 The S.D. Warren decision did not analyze or
adopt the PUD No. 1 Court’s analysis of sections
401(a) and 401(d).
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on, or that affect, non-federal waters,
that single word (‘‘applicant’’) would
effectively broaden the scope of the
federal regulatory programs enacted by
the 1972 CWA amendments beyond the
limits that Congress intended. Such an
interpretation could permit the
application of the CWA’s regulatory
programs, including section 401
certification conditions that are
enforced by federal agencies, to land
and water resources more appropriately
subject to traditional State land use
planning authority where not otherwise
preempted by federal law. See, e.g.,
SWANCC, 531 U.S. at 172–73.
As described in section II.F.4.a.i of
this notice and pursuant to its authority
to reasonably interpret ambiguous
statutes to fill gaps left by Congress, the
EPA is interpreting the language in
sections 401(a) and (d) differently than
the Supreme Court did in PUD No. 1.
The Court’s prior interpretation, that
once a ‘‘discharge’’ triggers the
certification requirement in section
401(a) the certification itself may cover
the entire ‘‘activity,’’ was not based on
the plain unambiguous text of the
statute, but rather was based on the
Court’s own interpretation of ambiguous
text in light of the interpretation of the
statute set forth in the 1971 certification
regulations (see section II.F.4.a.i of this
notice). The EPA’s interpretation under
this final rule is also based on a
reasonable interpretation of the text,
structure, and legislative history of
section 401 and is informed by
important policy considerations and the
Agency’s expertise, and the Agency’s
current rule is not foreclosed by the
Court’s prior interpretation. See Brand
X, 545 U.S. at 982.
For the reasons above, the EPA is
concluding that section 401 is a
regulatory provision that creates
federally enforceable requirements, and
for this and other reasons, its
application must be limited to point
source discharges into waters of the
United States. This interpretation is
consistent with the text and structure of
the CWA as well as the principal
purpose of this rulemaking, i.e., to
ensure that the EPA’s regulations
(including those defining a section 401
certification’s scope) are consistent with
the current CWA.38 For further
38 Although the legislative history on section 401
sometimes lacks clarity and can be internally
inconsistent, the Agency’s interpretation is
consistent with much of the legislative history from
the 1972 amendments. See, e.g., H.R. Rep. No. 92–
911, at 124 (1972) (‘‘It should be clearly noted that
the certifications required by section 401 are for
activities which may result in any discharge into
navigable waters. It is not intended that State
certification is or will be required for discharges
into the contiguous zone or the oceans beyond the
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discussion on the Agency’s
interpretation and comments received
on discharges under section 401, see
section III.A.2.a of this notice.
2. Timeline for Section 401 Certification
Analysis
Based on the language of the CWA
and consistent with the relevant case
law, the EPA is clarifying that a
certifying authority must act on a
section 401 certification within a
reasonable period of time, which shall
not exceed one year, and that there is no
tolling provision to stop the clock at any
time.
The text of section 401 expressly
states that a certifying authority must
act on a section 401 certification request
within a reasonable period of time,
which shall not exceed one year. 33
U.S.C. 1341(a)(1). Importantly, as the
words ‘‘shall not exceed’’ suggest, the
CWA does not guarantee that a
certifying authority may take a full year
to act on a section 401 certification
request. The certifying authority may be
subject to a shorter period of time,
provided it is reasonable. See Hoopa
Valley Tribe v. FERC, 913 F.3d 1099,
1104 (DC Cir. 2019) (‘‘Thus, while a full
year is the absolute maximum, it does
not preclude a finding of waiver prior to
the passage of a full year. Indeed, the
[EPA]—the agency charged with
administering the CWA—generally finds
a state’s waiver after only six months.’’
(citing 40 CFR 121.16)). The CWA’s
legislative history indicates that
inclusion of a maximum period of time
was to ‘‘insure that sheer inactivity by
the [certifying authority] will not
frustrate the Federal application.’’ H.R.
Rep. No. 92–911, at 122 (1972).
The timeline for action on a section
401 certification must conclude within
a reasonable period of time (not to
exceed one year) after receipt of a
certification request. Id.; 33 U.S.C.
1341(a)(1). The CWA does not specify
any legal requirements for what
constitutes a request or otherwise define
the term. As discussed further in section
III.C, this final rule addresses that
ambiguity to provide additional clarity
and regulatory certainty. Additionally,
territorial seas.’’); 118 Cong, Rec. 33,692, 33,698
(1972) (‘‘[t]he Conferees agreed that a State may
attach to any Federally issued license or permit
such conditions as may be necessary to assure
compliance with water quality standards in that
State.’’); S. Rep. No. 92–411, at 69 (1971) (‘‘This
section is substantially 21(b) of existing law
amended to assure consistency with the bill’s
changed emphasis from water quality standards to
effluent limitations based on the elimination of any
discharge of pollutants.’’ (parentheticals omitted));
117 Cong. Rec. 38,797, 38,855 (1971) (Mr Muskie:
‘‘Sections 401 and 402 provide for controls over
discharge.’’)
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the EPA has long recommended that a
project proponent requiring a federal
license or permit subject to section 401
certification hold early discussions with
both the certifying authority and the
federal agency, to better understand the
certification process and potential data
or information needs.
The CWA does not contain provisions
for tolling the timeline for any reason,
including to request or receive
additional information from the project
proponent. If the certifying authority
has not acted on a request for
certification within the reasonable time
period, the certification requirement
will be waived and the federal agency
may proceed to issue the license or
permit.
The final rule provides for specific
timeframes for certain procedural
requirements (e.g., pre-meeting filing
requests, discussed in final rule
preamble section III.B; and public notice
when EPA acts as the certifying
authority, discussed in final rule
preamble section III.H). Throughout this
final rule, EPA intends that the term
‘‘days’’ refers to calendar days as
opposed to business days. For further
discussion on the Agency’s
interpretation of the timeline for section
401 certification analysis and related
comments, see section III.F of this
notice. This final rule is intended to
provide greater clarity and certainty and
to address some of the delays and
confusion associated with the timing
elements of the section 401 certification
process.
III. Final Rule
This final rule is intended to make the
Agency’s regulations consistent with the
current text of CWA section 401,
increase efficiencies, and clarify aspects
of CWA section 401 that have been
unclear or subject to differing legal
interpretations in the past. The Agency
is replacing the entirety of the 1971
certification regulations at 40 CFR part
121 with this final rule. The following
sections further explain the Agency’s
rationale for the final rule, provide a
detailed explanation and analysis for
the substantive changes that the Agency
is finalizing, and respond to significant
public comments received on the
proposed rule.
The EPA’s 1971 certification
regulations were issued when the
Agency was but a few months old and
the CWA had not yet been amended to
include the material revisions to section
401.39 In modernizing 40 CFR part 121,
39 See 36 FR 22487, Nov. 25, 1971, redesignated
at 37 FR 21441, Oct. 11, 1972, further redesignated
at 44 FR 32899, June 7, 1979; Reorganization Plan
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this final rule recognizes and responds
to significant changes to the CWA that
occurred after the 1971 regulations were
finalized, especially the 1972 and 1977
amendments to the CWA.
Updating the 1971 certification
regulations to clarify expectations,
timelines, and deliverables also
increases efficiencies. Some aspects of
the 1971 certification regulations have
been implemented differently by
different authorities, likely because the
scope and timing of review were not
clearly addressed in EPA’s regulations.
While the EPA recognizes that States
and Tribes have broad authority to
implement State and Tribal law to
protect their water quality, see 33 U.S.C.
1251(b), section 401 is a federal
regulatory program that contains
limitations on when and how States and
Tribes may exercise this particular
authority. This final rule modernizes
and clarifies the EPA’s regulations and
will help States, Tribes, federal
agencies, and project proponents know
what is required and what to expect
during a section 401 certification
process, thereby reducing regulatory
uncertainty. For further discussion on
ways the final rule will reduce
regulatory uncertainty, see the
Economic Analysis available in the
docket for this final rule.
The EPA’s 1971 certification
regulations did not fully address the
public notice requirements called for
under CWA section 401(a)(1). The EPA
is finalizing public notice requirements
applicable to the EPA as the certifying
authority but is not extending these
requirements to other certifying
authorities. The EPA encourages
certifying authorities to consider how
their public notice requirements can be
developed or modified to ensure timely
decision-making and to work with
federal licensing and permitting
agencies to minimize conflicts between
State program administration and the
federally established reasonable period
of time.
Because the EPA has frequently
received requests for information
regarding certifying authority
requirements, the Agency solicited
comment on whether it would be
appropriate or necessary to require
certifying authorities to submit their
section 401 procedures and regulations
to the EPA for informational purposes.
One commenter stated that it would be
useful for the EPA to compile
procedures of certifying authorities and
make these publicly available in one
location, while another commenter
No. 3 of 1970 (creating the EPA), 84 Stat. 2086,
effective Dec. 2, 1970.
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stated that it was unnecessary and
inappropriate for the EPA to compile
procedures of certifying authorities.
Some commenters stated that it is not
necessary for certifying authorities to
submit their section 401 certification
procedures and regulations to the EPA.
One commenter noted that their
procedures are public information
available on the state website. Another
commenter stated that a regulation that
requires submittal of section 401
procedures is unnecessary and
duplicative because the State already
works with the EPA on section 401
procedures.
The EPA has considered these
comments, and the final rule does not
include a requirement for certifying
authorities to submit their procedures to
the EPA. However, to promote
transparency and regulatory certainty,
the EPA strongly encourages certifying
authorities to make their certification
regulations and any ‘‘water quality
requirements’’ that may be considered
during a certification process available
online. In the interest of transparency,
clarity, and public accessibility, the EPA
may consider compiling certifying
authorities’ procedures and water
quality requirements on its website in
the future.
In addition to the substantive changes
in the final rule described below, the
Agency made a number of revisions to
streamline and clarify the regulatory
text, and to more closely align that text
to the language in section 401. These
changes include revising the definitions
of ‘‘Administrator’’ and ‘‘discharge’’;
replacing the language ‘‘proposed
discharge location’’ in section 121.11(a)
with ‘‘facility or activity’’ for
consistency with section 401; revising
certain text in sections 121.7(f), 121.12,
and 121.16 for consistency with section
401; and removing redundant language
throughout the final rule.
A. When Section 401 Certification Is
Required
1. What is the Agency finalizing?
Under this final rule, the requirement
for a section 401 certification is
triggered based on the potential for any
federally licensed or permitted activity
to result in a discharge from a point
source into waters of the United States.
Consistent with section 401(a)(1),
section 121.2 of the final rule provides
that:
Certification is required for any
license or permit that authorizes an
activity that may result in a discharge.
This provision is modified from the
proposal to provide greater clarity
regarding when a certification is
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required, but the Agency does not
intend for this change to alter the
meaning of the provision from the
proposal. This final rule preamble also
clarifies in section III.M that
certification also is required before a
federal agency issues a general license
or permit which may result in a
discharge. As discussed further below,
in the final rule the term ‘‘discharge’’ is
defined to mean a point source
discharge into a water of the United
States, and the term ‘‘license or permit’’
is defined to mean a license or permit
issued by a federal agency to conduct
any activity which may result in a
discharge. The final rule reflects that
section 401 is triggered by the potential
for a discharge to occur, rather than an
actual discharge.
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2. Summary of Final Rule Rationale and
Public Comment
Section 121.2 of the final rule is
consistent with the Agency’s
longstanding interpretation and is not
intended to alter the scope of
applicability established in the CWA.
a. ‘‘Discharge’’
In section 401 and under the final
rule, the presence of, or potential for, a
discharge is a key element of when a
water quality certification is required.
Consistent with the text of the statute,
under the final rule section 401 is
triggered by the potential for a discharge
to occur, rather than the presence of an
actual discharge. The final rule defines
the term ‘‘discharge’’ consistent with the
proposal but replaces the term
‘‘navigable waters’’ in the proposed
definition with ‘‘waters of the United
States’’ in the final definition. This
change is not intended to change the
meaning of the definition; rather, it
provides clarity and consistency across
other CWA programs.
Many commenters agreed that the
requirement for a section 401
certification is triggered by the potential
for a discharge from a federally licensed
or permitted activity. One commenter
stated that the EPA’s reliance on an
actual discharge would disregard the
broad scope of section 401, which is
designed to consider all potential
discharges over the life of a federally
licensed or permitted activity. One
commenter stated that the proposed
definition of ‘‘discharge’’ does not
contemplate a potential discharge. The
commenter asserted that such an
interpretation would conflict with the
text of section 401 which states that
water quality certification applies to any
‘‘federal license or permit to conduct
any activity . . . which may result in a
discharge.’’
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The EPA agrees with commenters that
the language of the statute triggers the
section 401 certification requirement
based on a potential discharge.40
Section 401 is different from other parts
of the Act 41 and provides certifying
authorities with a broad opportunity to
review proposed federally licensed or
permitted projects that may result in a
discharge into waters of the United
States within their borders. The Agency
does not agree that the concept of
‘‘potential’’ must be incorporated into
the rule text definition of ‘‘discharge’’
itself; the final rule provision at section
121.2 clearly states that a 401
certification is required for ‘‘an activity
which may result in a discharge’’
(emphasis added).
In the proposal, the EPA requested
that certifying authorities and project
proponents submit comment on prior
experiences with undertaking the
certification process and later
determining that the proposed federally
licensed or permitted project would not
result in an actual discharge. The EPA
also requested comment on whether
there are specific procedures that could
be helpful in determining whether a
proposed federally licensed or
permitted project will result in an actual
discharge, and how project proponents
may establish for regulatory purposes
that there is no potential discharge and
therefore no requirement to pursue a
section 401 certification. See 84 FR
44080. One commenter supported
allowing the certifying authority or
project proponent to determine, after the
certification process is triggered, that a
section 401 certification is not required
where there is no actual or potential
discharge. Another commenter
expressed concern that this would allow
the project proponent to determine that
a section 401 certification is no longer
required if the project proponent
determines, after the section 401
certification process is triggered, that
there is no actual or potential discharge.
Another commenter stated that a project
that is clearly defined early in the
federal licensing or permitting and
certification processes would help
project proponents, certifying
authorities, and federal agencies
establish whether there is a potential
40 A certification is required for ‘‘a Federal license
or permit to conduct any activity . . . which may
result in any discharge into the navigable waters
. . .’’ 33 U.S.C. 1341(a)(1) (emphasis added).
41 See, e.g., National Pork Producers Council v.
EPA, 635 F.3d 738, 751 (5th Cir. 2011) (holding that
‘‘the EPA cannot impose a duty to apply for a
permit on a [concentrated animal feeding operation]
that ‘proposes to discharge’ or any CAFO before
there is an actual discharge.’’); Waterkeeper
Alliance, Inc. v. EPA, 399 F.3d 486, 505 (2d Cir.
2005) (same).
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42237
discharge, and therefore promote
compliance with section 401 obligations
or clarify that 401 certification is not
required. One commenter supported a
process for determining when a project
with a potential for a discharge will
result in an actual discharge. A few
commenters stated that a process for
determining whether or not there will
be an actual discharge ignores the
statutory phrase ‘‘may result in a
discharge,’’ and they asserted that giving
project proponents a role in such a
process is improper because they have
no authority to find that section 401
would not apply.
This final rule does not provide a
process for certifying authorities or
project proponents to determine
whether a federally licensed or
permitted project may have a potential
or actual discharge. However, the
federal agencies whose licenses or
permits may be subject to section 401
should consider whether such
procedures, if incorporated into their
implementing regulations, may provide
additional clarity within their licensing
and permitting programs. The EPA
observes that, if a certifying authority or
project proponent determines after the
certification process is triggered that
there is no actual discharge from the
proposed federally licensed or
permitted project and no potential for a
discharge, there is no longer a need to
request or obtain certification. The EPA
notes that ultimately the project
proponent is responsible for obtaining
all necessary permits and
authorizations, including a section 401
certification. If the federal licensing or
permitting agency determines that there
is a potential for a discharge, as part of
its evaluation of the proposed project, it
may not issue the federal license or
permit unless a section 401 certification
is granted or waived by the certifying
authority. If a project proponent
requests a section 401 certification and
later asserts that section 401 does not
apply, the EPA recommends that the
project proponent discuss the matter
with, and provide supporting
information and documentation to, the
certifying authority and the federal
agency. As provided in section 401(b)
and section 121.16 of the final rule, the
EPA is available to provide technical
assistance throughout the section 401
process when requested to do so.
The EPA has concluded that unlike
other CWA regulatory provisions,
section 401 is triggered by the potential
for any unqualified discharge, rather
than by a discharge of pollutants. This
interpretation, reflected in both the
proposal and this final rule, is
consistent with the text of the statute
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and with U.S. Supreme Court precedent.
In S.D. Warren, the Court considered
whether discharges from a dam 42 were
sufficient to trigger section 401, even if
those discharges did not add pollutants
to waters of the United States. Because
section 401 uses the term discharge but
the Act does not provide a specific
definition for the term,43 the Court
applied its ordinary dictionary meaning,
‘‘flowing or issuing out.’’ S.D. Warren
Co. v. Maine Bd. of Envtl. Prot. et al.,
547 U.S. 370, 376 (2006). The Court
concluded that Congress intended this
term to be broader than the term
‘‘discharge of pollutants’’ that is used in
other provisions of the Act, like section
402. See, e.g., 33 U.S.C. 1342, 1344; S.D.
Warren, 547 U.S. at 380–81. For further
discussion of S.D. Warren, see section
II.F.4.a.ii of this notice, and for further
discussion of discharges, see section
III.A.2.a of this notice. The Court held
that discharges from the dam triggered
section 401 because ‘‘reading § 401 to
give ‘discharge’ its common and
ordinary meaning preserves the state
authority apparently intended.’’ S.D.
Warren, 547 U.S. at 387. The EPA’s
interpretation reflected in this final rule
is consistent with the Court’s
conclusion.
Many public commenters addressed
the proposed definition of ‘‘discharge.’’
Some commenters stated that the
definition of ‘‘discharge’’ in the
proposed rule should not contain the
word ‘‘discharge.’’ Some commenters
stated that the proposed rule’s
definition of discharge is unnecessary
because there is no ambiguity in that
statutory term. Many commenters cited
S.D. Warren to argue that the EPA’s
definition of ‘‘discharge’’ was too
narrow, and that the rule should define
discharge by its common meaning,
‘‘issuing or flowing out.’’ Several
commenters were concerned that if
discharge was defined as being from a
point source then the discharge would
need to contain pollutants, because of
the CWA definition of ‘‘point source.’’ 44
One commenter recommended that
‘‘discharge’’ be defined as ‘‘the specific
outflow from a point source into
navigable waters.’’ Another commenter
asserted that S.D. Warren was wrongly
decided and that section 401 should be
42 In S.D. Warren, the Court was not asked to
decide whether the discharges from the dams were
point source discharges.
43 The Act provides, ‘‘The term ‘discharge’ when
used without qualification includes a discharge of
a pollutant, and a discharge of pollutants.’’ 33
U.S.C. 1362(16).
44 The CWA defines point source as ‘‘any
discernible, confined and discrete conveyance . . .
from which pollutants are or may be discharged.’’
33 U.S.C. 1362(14) (emphasis added).
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triggered only by discharges of
pollutants.
The EPA has considered these
comments and concludes that, given the
diverse interpretations presented in
public comments, including a definition
of ‘‘discharge’’ in the section 401
certification regulations will increase
clarity. Consistent with the proposal,
the Agency has concluded that a
discharge need not involve pollutants in
order to trigger section 401. The EPA
disagrees with commenters who
asserted that a point source discharge
necessarily requires a discharge of
pollutants. The definition of point
source in section 502(14) of the CWA
provides that a point source is a
conveyance from which pollutants are
or may be discharged. A discharge of
pollutants is not required for a
conveyance to be considered a point
source. As discussed immediately above
and in section III.A.2.a of this notice,
the EPA’s longstanding position is that
the term ‘‘discharge’’ as used in section
401 is limited to point sources but
includes releases regardless of whether
they contain pollutants. The Agency
disagrees with commenters who stated
that using the term ‘‘discharge’’ within
the definition of ‘‘discharge’’ creates
confusion or ambiguity. Indeed, the
final rule definition is consistent with
the CWA section 502(16) definition of
‘‘discharge,’’ which also contains the
term ‘‘discharge.’’ The EPA also
disagrees with commenters who
asserted that the proposed definition
was narrower than the Court’s opinion
in S.D. Warren. As noted above, the
final rule’s definition is consistent with
the Court’s application of the ordinary
meaning of the term. Finally, the EPA
disagrees with the commenter’s
recommendation to define ‘‘discharge’’
as the specific outflow from a point
source into navigable waters. The EPA
has concluded that this language could
be construed quite narrowly to mean a
discharge from a specific ‘‘outfall’’ such
as a pipe or outlet, while excluding
discharges from dredge or fill projects.
One commenter requested that the
EPA clarify that section 401 certification
is required only where there is a
discharge of pollutants to a water of the
United States, and not simply a
withdrawal of water. As discussed
above, the EPA does not interpret
section 401 as requiring a discharge of
pollutants. However, the EPA agrees
with commenters that a section 401
certification is not required for a water
withdrawal that has no associated
potential for a point source discharge to
a water of the United States. Multiple
court decisions have concluded that a
water withdrawal is not a discharge and
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therefore does not trigger the need for a
water quality certification.45
b. ‘‘From a Point Source’’
The final rule provides that, to trigger
section 401, a discharge must be from a
point source. Several commenters
agreed that a section 401 certification is
required only where there is a point
source discharge. A few commenters
agreed that Title IV of the CWA focuses
on point source discharges, specifically
in sections 402 and 404, leading them
to conclude that section 401 should
apply only to point sources as well. One
commenter stated that the trigger for
section 401 is specifically a potential
point source discharge, citing to Oregon
Natural Desert Ass’n v. Dombeck, 172
F.3d 1092 (9th Cir. 1998). Some
commenters stated that the Supreme
Court in S.D. Warren held that the
certification requirement was not
limited to discharges of pollutants, but
that the discharge must nonetheless be
a point source discharge, citing
Dombeck. Other commenters also
referred to S.D. Warren to assert that the
Supreme Court refused to limit the term
‘‘discharge’’ to only include a point
source discharge. These commenters
stated that the Supreme Court held that
the term ‘‘discharge of pollutants’’ was
limited to point sources and the term
‘‘discharge’’ was significantly broader.
In doing so, many commenters took
issue with the EPA’s reliance on
Dombeck. One commenter cited
Russello v. United States, 464 U.S. 16
(1983), to argue generically that ‘‘when
‘Congress includes particular language
in one section of a statute but omits it
in another section of the same Act, it is
generally presumed that Congress acts
intentionally and purposely in the
disparate inclusion or exclusion.’ ’’
The final rule requirement that a
discharge must be from a point source
to trigger section 401 is consistent with
case law from the Ninth Circuit, which
concluded that the word ‘‘discharge’’ as
used consistently throughout the CWA
refers to the release from a point source,
and that use is also appropriate for
section 401. Dombeck, 172 F.3d at 1099.
The EPA has consistently implemented
the interpretation of section 401
articulated by the Dombeck court and
adopts the Ninth Circuit’s interpretation
in this final rule. The interpretation that
a discharge must be a point source
discharge is consistent with the
structure of the Act and with the other
45 See, e.g., North Carolina v. FERC, 112 F.3d
1175, 1187 (D.C. Cir. 1997) (holding that
withdrawal of water from lake does not constitute
discharge for CWA section 401 purposes).
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CWA regulatory programs (see section
III.A.2.a of this notice).46
The EPA disagrees with commenters
who asserted that the Supreme Court in
S.D. Warren specifically addressed
whether a discharge must be from a
point source. The Court’s focus in S.D.
Warren was on whether pollutants must
be added to constitute a ‘‘discharge.’’
S.D. Warren, 547 U.S. at 376–87. See
also ONDA v. USFS, 550 F.3d 778, 783–
84 (9th Cir. 2008) (noting that ‘‘[t]he
issue in S.D. Warren was narrowly
tailored to determine whether a
discharge from a point source could
occur absent addition of any pollutant
to the water emitted from the dam
turbines’’). The Court stated that the
term discharge is broader than
‘‘discharge of a pollutant’’ and
‘‘discharge of pollutants,’’ but noted that
‘‘discharge’’ is not defined in the statute.
S.D. Warren, 547 U.S. at 376. The Court
also noted that for purposes of section
401, ‘‘neither the EPA nor FERC has
formally settled the definition, or even
set out agency reasoning,’’ and the Court
therefore continued to rely on the
dictionary definition of the term to
mean ‘‘flowing or issuing out’’ or ‘‘to
emit; to give outlet to; to pour forth
. . .’’ Id. In 2008, after the S.D. Warren
decision was issued, the Ninth Circuit
was asked to revisit its 1998 decision in
Dombeck. In response, the Ninth Circuit
held that ‘‘[n]either the ruling nor the
reasoning in S.D. Warren is inconsistent
with this court’s treatment of nonpoint
sources in § 401 of the Act, as explained
in Dombeck. Accordingly, the principles
of stare decisis apply, and this court
need not revisit the issue decided in
Dombeck.’’ ONDA v. USFS, 550 F.3d
778, 785 (9th Cir. 2008). The Agency
agrees.
In this final rule, the EPA is formally
establishing a definition for the term
‘‘discharge’’ for purposes of CWA
section 401 and setting out its reasoning
in support of the definition. The final
rule’s definition is consistent with the
Agency’s longstanding interpretation of
the statute and with relevant Ninth
Circuit case law, and nothing in S.D.
Warren or PUD No. 1 precludes the EPA
from adopting the definition in the final
rule.47
46 See, e.g., Briefs of the United States in ONDA
v. Dombeck, Nos. 97–3506, 97–35112, 97–35115
(9th Cir. 1997), and ONDA v. USFS, No. 08–35205
(9th Cir. 2008).
47 On April 23, 2020, the United States Supreme
Court issued a decision in County of Maui, Hawaii
v. Hawaii Wildlife Fund, et al., No. 18–260, which
addressed the question whether the Clean Water
Act requires a NPDES permit under section 402 of
the Act when pollutants originate from a point
source but are conveyed to navigable waters by
groundwater. The Court held that ‘‘the statute
requires a permit when there is a direct discharge
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c. ‘‘Into a Water of the United States’’
Consistent with the proposal, the final
rule reflects that section 401 is triggered
by a potential discharge into a water of
the United States. 33 U.S.C. 1341(a)(1),
1362(7). Potential discharges into State
or Tribal waters that are not waters of
the United States do not trigger the
requirement to obtain section 401
certification. Id. at 1342(a)(1).
Many commenters agreed that
certification is required where there is a
discharge into a water of the United
States. Some of these commenters
agreed that section 401 would not apply
to non-federal waters. A couple of
commenters expressed concern that by
limiting the requirement for a section
401 certification to activities that
discharge directly to waters of the
United States, there would be many
federally permitted projects where
section 401 certification would not be
required even though discharges from
those projects could impact State or
Tribal waters. A few commenters argued
that the EPA’s deference to States has
been inconsistent, noting that the
Agency’s proposed rulemaking to define
‘‘waters of the United States’’ placed
strong emphasis on States’ authority to
protect their water resources, while the
proposed section 401 rulemaking
reduces States’ authority to protect their
water resources. These commenters said
that they had difficulty reconciling the
States’ expanded role under the ‘‘waters
of the United States’’ rule with the
diminished role of States in the
proposed rule.
The final rule’s interpretation that a
discharge must be into a water of the
United States to trigger the section 401
certification requirement is consistent
with the plain text of the statute, is
supported by the legislative history, and
is consistent with other CWA regulatory
program requirements that apply to
discharges to waters of the United
States, not discharges to State or Tribal
waters. Id.; see also H.R. Rep. No. 92–
911, at 124 (1972) (‘‘It should be clearly
noted that the certifications required by
section 401 are for activities which may
from a point source into navigable waters or when
there is the functional equivalent of a direct
discharge.’’ Op. at 15 (emphasis in original). The
Court articulated a number of factors that may
prove relevant for purposes of section 402
permitting. Id. at 16. Consistent with the Court’s
decision, if a discharge of a pollutant is determined
to require a federal permit under section 402 as the
functional equivalent of a direct discharge, it will
also be subject to section 401 because, as discussed
above, the term ‘‘discharge’’ under section 401
includes a discharge of a pollutant subject to
section 402. S.D. Warren Co. v. Maine Bd. of Envtl.
Prot., 547 U.S. 370, 375 (2006) (citing 33 U.S.C.
1362(16)). This conclusion is consistent with the
Court’s decision in Maui.
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result in any discharge into navigable
waters.’’) (emphasis added); see also
section III.A.2.a of this notice for
discussion on discharges to waters of
the United States. The EPA disagrees
with commenters who suggested that
this rule is inconsistent with the
recently finalized rule defining ‘‘waters
of the United States.’’ Both rules are
intended to provide clarity on the scope
of federal authority and State or Tribal
authority to regulate certain waters. The
final definition of ‘‘waters of the United
States’’ reestablishes the appropriate
balance between waters subject to
federal regulation and those waters or
features that are subject to exclusive
State or Tribal jurisdiction. As described
further in section II.F of this notice,
section 401 provides a role for States
and authorized Tribes to participate in
federal license or permitting processes,
including those in which they may
otherwise be preempted by federal law.
States and Tribes retain authority to
regulate and protect waters of the State
or Tribe in accordance with State and
Tribal law and where not preempted by
federal law. As explained in detail in
the proposed rule preamble, section 401
is a federal regulatory provision, as
certification conditions are incorporated
into federal licenses and permits and are
enforceable by the federal government.
If section 401 was expanded to cover
activities with discharges to non-federal
waters, such an expansion would
authorize the federal government to
regulate waters and features that are
beyond the scope of CWA regulatory
authority; Congress did not intend these
waters to be subject to federal
regulation.
d. Federal License or Permit
Section 401 certification requirements
are triggered when a project proponent
applies for a federal license or permit to
conduct an activity which may result in
any discharge into a water of the United
States. 33 U.S.C. 1341(a)(1). However, in
those cases where a federal agency
discharges dredged or fill material into
waters of the United States but does not
issue itself a license or permit, the
Corps’ regulations require reasonable
and appropriate efforts to demonstrate
compliance with effluent limitations
and state water quality standards, which
typically includes seeking
certification.48 Consistent with the
48 See Appendix C of Engineer Regulation 1105–
2–100; 33 CFR 335.2 (‘‘[T]he Corps does not issue
itself a CWA permit to authorize Corps discharges
of dredged material or fill material into U.S. waters,
but does apply the 404(b)(1) guidelines and other
substantive requirements of the CWA and other
environmental laws.’’).
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proposal, the final rule defines the term
‘‘license or permit’’ to mean ‘‘any
license or permit granted by an agency
of the Federal Government to conduct
any activity which may result in a
discharge.’’
The CWA does not list specific federal
licenses and permits that are subject to
section 401 certification requirements.
The EPA believes that the most common
examples of licenses or permits that
may be subject to section 401
certification are CWA section 402
NPDES permits issued by EPA in States
where the EPA administers the NPDES
permitting program; CWA section 404
permits for the discharge of dredged or
fill material and Rivers and Harbors Act
sections 9 and 10 permits issued by the
Army Corps of Engineers; and
hydropower and interstate natural gas
pipeline licenses issued by FERC. The
final rule does not provide an exclusive
list of federal licenses and permits that
may be subject to section 401. Instead,
the final rule focuses on whether there
is potential for the activity authorized
by the federally issued license or permit
to result in a discharge from a point
source into a water of the United States.
A few commenters requested
clarification on the requirement for a
federal license or permit to trigger the
need for a section 401 certification. One
commenter asserted that the proposal
was unclear because the proposed
regulatory text did not tie the need for
a section 401 certification to an
application for a federal license or
permit. The EPA disagrees with the
suggestion that the proposal does not tie
the need for a section 401 certification
to the application for a federal license
or permit. Section 121.2 of the proposed
rule stated that ‘‘any applicant for a
license or permit to conduct any activity
which may result in a discharge shall
provide the Federal agency a
certification from the certifying
authority . . .’’ As noted above, the
proposal and this final rule define the
term ‘‘license or permit’’ as one issued
by a federal agency.
A few commenters suggested that
additional language be added to the
proposed definition of ‘‘discharge’’ to
clearly describe what constitutes a point
source, including language concerning
equipment and construction activities
associated with the discharge of dredged
or fill material. The EPA believes that
defining ‘‘point source’’ in the final rule
is unnecessary in light of the statutory
definition (33 U.S.C. 1362(14)) and
court decisions concluding that
bulldozers, mechanized land clearing
machinery, and similar types of
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equipment used for discharging dredge
or fill material are ‘‘point sources.’’ 49
Another commenter asserted that
States have required facilities to obtain
a section 401 certification where the
facility has a permit from a State with
delegated authority under section 402.
Section 401 certification is not required
for State- or Tribally-issued permits
when the State or Tribe has assumed
operation of the permit program in lieu
of the federal government.50 The CWA
statutory language is clear that the
license or permit triggering the need for
a section 401 certification must be a
federal license or permit, that is, one
issued by a federal agency.
Implementation of a State or Tribal
permit program in lieu of the federal
program does not ‘‘federalize’’ the
resulting licenses or permits for
purposes of section 401. Section 401
certification does not apply to those
authorizations issued by the State or
Tribe.51 The CWA anticipates that
States and Tribes issuing those permits
will ensure consistency with CWA
provisions and other appropriate
requirements of State and Tribal law as
part of their permit application
evaluation.
One commenter noted that the
proposal indicated that the Corps does
not process and issue permits for its
own activities and stated that federal
agencies should be subject to the same
certification request submittal
requirements as non-federal agency
49 See, e.g., Avoyelles Sportsmen’s League v.
Marsh, 715 F.2d 897 (5th Cir. 1983); U.S. v. Larkins,
657 F.Supp. 76 (W.D. Kent. 1987), aff’d, 852 F.2d
189 (6th Cir. 1988).
50 State or Tribal implementation of a license or
permit program in lieu of the federal program, such
as a CWA section 402 permit issued by an
authorized state, does not federalize the resulting
licenses or permits and therefore does not trigger
section 401 certification. This conclusion is
supported by the legislative history of CWA section
401, which noted that ‘‘since permits granted by
States under section 402 are not Federal permits—
but State permits—the certification procedures are
not applicable.’’ H.R. Rep. No. 92–911, at 127
(1972). The legislative history of the CWA
amendments of 1977, discussing state assumption
of section 404, also noted that ‘‘[t]he conferees wish
to emphasize that such a State program is one
which is established under State law and which
functions in lieu of the Federal program. It is not
a delegation of Federal authority.’’ H.R. Rep. No.
95–830, at 104 (1977).
51 As described elsewhere in this notice, the
Corps’ existing certification regulations provide a
reasonable period of time of 60 days for federally
issued CWA section 404 permits. 33 CFR
325.2(b)(1)(ii); see also final rule preamble section
III.F. To the extent that certifying authorities believe
that this timeline is too short to provide
certification for a Federally issued section 404
permit, States are authorized to assume
administration of that program for certain waters.
40 CFR 233; see also Final Report of the Assumable
Waters Subcommittee (May 2017), available at
https://www.epa.gov/cwa404g/nacept-assumablewaters-subcommittee-final-report-may-10-2017.
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project proponents. In response, the
EPA notes that the CWA ties the
requirement for a section 401
certification to a federal license or
permit. As a result, in circumstances
where there is no federal license or
permit, including when federal agency
activities do not require a license or
permit, section 401 certification is not
required. Nonetheless, the Corps’
current regulations indicate that section
401 requires the Corps to seek section
401 certification for dredge and fill
projects involving a discharge into
waters of the United States, regardless of
whether the Corps issues itself a permit
for those activities.52
B. Pre-Filing Meeting Request
1. What is the Agency finalizing?
The EPA proposed to establish a prefiling meeting process when the EPA is
the certifying authority to ensure that
the Agency receives early notification of
anticipated projects and can discuss
information needs with the project
proponent. Many commenters stated
that it would be helpful for project
proponents to request pre-filing
meetings with all certifying authorities
(not just the EPA), although most
commenters did not say that certifying
authorities should be required to accept
such meetings. In light of these
comments, and because the benefits of
the pre-filing process are applicable
regardless of the identity of the
certifying authority, the EPA is
finalizing a requirement that all project
proponents, including federal agencies
when they seek certification for general
licenses or permits, submit a request for
a meeting with the appropriate
certifying authority at least 30 days
prior to submitting a certification
request.53 The final rule requires only
that the project proponent request the
pre-filing meeting and leaves to the
discretion of the certifying authority
whether a pre-filing meeting may be
52 See 33 CFR 336.1(a)(1) (‘‘The CWA requires the
Corps to seek state water quality certification for
discharges of dredged or fill material into waters of
the U.S.’’).
53 The EPA recognizes that some activities
conducted in response to a hurricane or other
similar event may require emergency procedures
that do not allow for compliance with pre-request
meeting procedures. Federal licensing and
permitting agencies should establish such
emergency procedures by regulation to ensure that
project proponents, certifying authorities, and the
public are made aware of the types of circumstances
that could prevent compliance with ordinary prefiling meeting request requirements. Nothing in this
final rule precludes federal agencies from
establishing emergency procedures to ensure
continuation of operations or other appropriate
emergency procedures, including procedures that
may not allow for compliance with pre-request
meeting procedures.
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necessary or appropriate for a particular
project. The meeting request itself
provides advance notification to the
certifying authority that a certification
request may be forthcoming and
therefore promotes early coordination,
even when the certifying authority does
not hold a pre-filing meeting.
2. Summary of Final Rule Rationale and
Public Comment
The EPA is expanding the proposed
pre-filing meeting request requirement,
and under this final rule, all project
proponents, including federal agencies
when they seek certification for general
licenses or permits, must submit a
request for a pre-filing meeting with the
appropriate certifying authority at least
30 days prior to submitting a
certification request. This requirement
will ensure that certifying authorities
receive early notification and have an
opportunity to discuss the project and
potential information needs with the
project proponent before the statutory
timeframe for review begins. The final
rule also encourages the certifying
authority to take actions to initiate
coordination with the Federal agency
after receiving the pre-filing meeting
request.
In order to facilitate early engagement
and coordination, and using its
discretion to interpret the term
‘‘request’’ as applied to certification
procedures, the EPA is finalizing a
regulatory requirement in section 121.4
of the final rule that all project
proponents must submit a request for a
pre-filing meeting at least 30 days in
advance of submitting a certification
request. Under the final rule, certifying
authorities are given an opportunity to
accept or host such a pre-filing meeting,
but they retain discretion to decline the
request or simply not respond. Under
the final rule, if the certifying authority
does not respond to the request, the
project proponent may submit a
certification request as long as it
includes documentation, as required in
section 121.5 of the final rule, that it
requested the pre-filing meeting at least
30 days prior to submitting the
certification request.
In addition to requiring the project
proponent to request a pre-filing
meeting, the proposed rule would have
required EPA to respond within a
certain period of time and also required
the parties to discuss certain topics and
to be prepared to share certain
information during the pre-filing
meeting. The final rule no longer
requires those additional procedures
and instead encourages certifying
authorities, project proponents and
federal licensing and permitting
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agencies to engage in early coordination.
Under the final rule, if the certifying
authority grants the pre-filing meeting,
the project proponent and the certifying
authority are encouraged to discuss the
nature of the proposed project and
potential water quality effects. The final
rule also encourages the project
proponent to provide a list of other
required State, interstate, Tribal,
territorial, and federal authorizations
and to describe the anticipated timeline
for construction and operation. After
receiving the pre-filing meeting request,
the certifying authority is encouraged to
contact the federal agency and to
identify points of contact, so as to
facilitate information sharing between
the certifying authority and Federal
agency throughout the certification
process. In the final rule, the EPA
encourages these important steps to
help promote an efficient certification
process. These recommendations are
consistent with many recommendations
in EPA’s 2019 Guidance (which EPA is
rescinding in this action, as no longer
necessary in light of this final rule) as
well as with recommendations made in
the proposed rule preamble.
The Agency believes that the term
‘‘request’’ as used in the statute is broad
enough to include an implied
requirement that, as part of the
submission of a request for certification,
a project proponent also provide the
certifying authority with advance notice
that a certification request is imminent.
The relatively short time (no longer than
one year and possibly much less) that
certifying authorities are provided
under the CWA to act on a certification
request (or else waive the certification
requirements of section 401(a)) provides
additional justification in this context to
interpret the term ‘‘request for
certification’’ to allow the EPA to
require a pre-filing meeting request.
Many commenters supported the
EPA’s proposal to require project
proponents to request pre-filing
meetings. Several commenters
supported the proposed pre-filing
process where the EPA is the certifying
authority, while others supported
extending it to all certifying authorities.
Several commenters stated that such
meetings, while useful for a variety of
purposes (e.g., identifying what
information may be needed from a
project proponent), should not be
mandatory. Other commenters stated
that such meetings should be used only
for complex, non-routine projects. Some
commenters asserted that the pre-filing
process could penalize States who
choose not to attend pre-filing meetings,
even though it may not be feasible or
necessary in all instances, and argued
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42241
that the EPA should not seek to
supplant a State’s expertise on when a
pre-filing meeting is necessary. Several
commenters noted that some States have
established their own pre-filing meeting
requirements and should be encouraged
to develop their own criteria, including
choosing whether to hold such prefiling meetings. Additionally, some
commenters felt that the proposed 30day notice for such meetings was too
short, while another commenter
requested that the EPA provide
‘‘safeguards’’ to ensure that States do
not use the pre-filing meeting as an
opportunity to request unreasonable
information or studies that would delay
a certification request. Some
commenters noted that while likely to
yield useful information, the proposed
regulations lack a means of enforcing
the pre-filing procedures and asserted
that the process could reward applicants
who fail to cooperate with pre-filing
procedures. Some commenters noted
that the proposal did not include
expected outcomes from such early
collaboration and asserted that this
could result in inadequate certification
requests. Some commenters stated that
the EPA’s proposal did not include
sufficient guidance on best practices for
pre-filing meetings, such as what
information the project proponent
should be prepared to share with the
certifying authority.
The EPA agrees with commenters
who stated that pre-filing meetings
would generally improve early
coordination and promote efficiency in
section 401 certification decisionmaking, although the utility of such
meetings could depend on the
complexity of the project and resources
of the certifying authority. The EPA also
agrees with commenters who stated that
pre-filing meetings under the final rule
should have an accountability
mechanism, and thus the final rule
requires the project proponent to
include documentation of its pre-filing
meeting request in any certification
request filed with the certifying
authority (see section III.C of this
notice). The EPA recommends that
project proponents submit a pre-filing
meeting request in writing and maintain
a copy of the written request, as the
final rule requires such documentation
to be submitted in a certification
request. If a project proponent does not
submit a pre-filing meeting request or
does not maintain documentation that it
made the request, the subsequent
certification request will not meet the
requirements of the final rule, and in
such circumstances the reasonable
period of time would not start.
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The final rule does not set a limit on
how early a project proponent may
submit a pre-filing meeting request or
initiate discussions with a certifying
authority in order to encourage early
and ongoing coordination between the
project proponent and the certifying
authority. The Agency disagrees with
the suggestion that a pre-filing meeting
requirement could delay a certification
request. Even if the certifying authority
does not agree to meet, the project
proponent is free to submit a
certification request 30 days after
submitting the meeting request. See
section III.C of this notice. In some
cases, a project proponent may find it
beneficial to engage with a certifying
authority well in advance of the 30-day
pre-filing meeting period, particularly
for complex projects. The 30-day period
after submittal of the pre-filing meeting
request and prior to the submission of
a certification request provides an
opportunity for the project proponent to
verify whether a section 401
certification is required and for the
certifying authority to identify potential
information, in addition to the
certification request requirements in
this rule, that may be necessary for the
certifying authority to act on the
certification request. Ultimately, the
Agency believes that this provision of
the final rule will allow for a more
efficient and predictable certification
process for all parties.
Under the final rule, certifying
authorities are not required to grant prefiling meeting requests. The EPA has
determined that certifying authorities
are in the best position to determine
when a pre-filing meeting is necessary
to help ensure that they receive all
necessary information to act on
certification requests within the
reasonable period of time. The Agency
encourages project proponents and
certifying authorities to use the prefiling meeting to discuss the proposed
project and to determine what
information is needed to enable the
certifying authority to act on the
certification request in the reasonable
period of time. Additionally, certifying
authorities and project proponents may
use the pre-filing meeting to discuss
other appropriate water quality
requirements that may be applicable to
the certification request and any
necessary procedural requirements (e.g.,
ascertain whether the State or Tribe
requires any fees). The EPA expects that
certifying authorities may take
advantage of a pre-filing meeting request
for larger or more complex projects and
might choose to decline the request for
more routine and less complex projects.
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The pre-filing meeting may be
conducted in-person, or remotely
(through telephone, online, or other
virtual platforms), as deemed
appropriate by the certifying authority.
Certifying authorities are encouraged
to develop pre-filing meeting
procedures tailored to identify
information that may be needed to
review and act on a certification request.
Such procedures could vary depending
on the project type, project complexity,
or the triggering federal license or
permit, to enable greater efficiency and
predictability in the certification
process. The Agency emphasizes that
any pre-filing meeting procedures or
pre-filing expectations developed or
promulgated by certifying authorities
cannot modify the requirements for a
certification request established in this
final rule. The EPA also notes that any
new State or Tribal pre-filing meeting
procedures may not be used to extend
the 30-day timeline following a prefiling meeting request for project
proponents to submit a certification
request, nor may pre-filing meeting
procedures be used to extend or modify
the reasonable period of time
established by a Federal agency. The
EPA believes that requiring a pre-filing
meeting request too early could be an
abuse of the process and result in an
unreasonable extension of the
reasonable period of time that Congress
envisioned, which is not to exceed one
year. Rather, such procedures should be
focused on allowing both the project
proponent and the certifying authority
an opportunity to develop a common
understanding and expectation of the
types of information that may be
necessary for a certifying authority to
act on a certification request consistent
with section 401 and this final rule.
Some commenters asserted that prefiling meetings should not limit a State’s
ability to request additional information
after a certification request has been
made. Other commenters did not think
that pre-filing meetings should preclude
project proponents from withdrawing
and resubmitting certification requests
to extend the reasonable period of time,
which they stated is sometimes
necessary for complex projects. Under
the final rule, the pre-filing meeting
request requirement does not affect a
certifying authority’s ability to request
additional information from a project
proponent once the reasonable period of
time has started (see section III.F.2.a of
this notice), but such information
requests cannot operate to extend the
reasonable period of time (see section
III.F for further discussion on how
certifying authorities may request an
extension to the reasonable period of
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time from the federal agency). This
requirement also does not affect the
ability of project proponents to
withdraw a certification request
voluntarily (see section III.F of this
notice). The Agency disagrees with
commenters who asserted that the prefiling meeting request requirement
would penalize certifying authorities
who choose not to avail themselves of
the pre-filing meeting; accepting a prefiling meeting is not a mandatory
requirement. The Agency anticipates
that certifying authorities will act in
good faith when evaluating pre-filing
meeting requests and identifying
information they may need to review
and act on a certification request. The
Agency notes that early engagement and
coordination, including participation in
a pre-filing meeting, may help increase
the quality of information that is
provided by project proponents and
may reduce the need for the certifying
authority to make additional
information requests during the
reasonable period of time.
In addition to pre-filing meetings
between certifying authorities and
project proponents, commenters also
suggested a variety of ways in which
federal agencies could facilitate
information-sharing prior to the
certifying authority’s receiving a
certification request. For example, one
commenter expressed support for
advance coordination between States
and federal agencies to streamline
federal licensing and permitting actions.
A couple of commenters suggested that
federal agencies should notify States
and Tribes of projects that require a
section 401 certification as soon as
possible. One of these commenters
stated that the coordination between
State and federal environmental review
requirements and processes should be
done without diminishing section 401
certification authority. Another
commenter objected to federal agency
use of pre-filing meetings to inform the
duration of the reasonable period of
time for review for certification actions,
unless there were clear inputs and
outcomes for such meetings.
The EPA recognizes that federal
agencies are uniquely positioned to
promote pre-filing coordination with
certifying authorities and with project
proponents, so as to harmonize project
planning activities and to promote
timely action on certification requests.
The Agency acknowledges that other
federal agencies may provide for prefiling discussions in their regulations,
see, e.g., 18 CFR 5.1(d)(1) and 33 CFR
325.1(b), and recognizes that many
certifying authorities and federal
agencies already have coordination
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memos, memoranda of agreement, or
other cooperative mechanisms in place.
The Agency is not finalizing specific
requirements for federal agency
coordination with certifying authorities
(except when federal agencies are
themselves seeking certification, see
section III.M of this notice). However, if
there is a pre-application process
required or facilitated by the federal
licensing or permitting agency and if the
timing of that process would allow the
project proponent to request a pre-filing
meeting from the certifying authority at
least 30 days before submitting a
certification request, then a joint
meeting among federal agencies,
certifying authorities, and project
proponents could also be used as the
pre-filing meeting for a certification
request.
In general, the EPA encourages federal
agencies to notify certifying authorities
as early as possible about proposed
projects that may require a section 401
certification. Additionally, the EPA
encourages federal agencies (1) to timely
respond to requests from certifying
authorities for information concerning
the proposed federal license or permit,
and (2) to the extent consistent with
agency regulations and procedures,
provide technical and procedural
assistance to certifying authorities and
project proponents upon request. The
EPA also encourages project proponents
and certifying authorities to engage in
any additional pre-filing discussion
opportunities that may facilitate greater
communication and information
sharing, and therefore a more efficient
and informed certification decision.
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C. Certification Request/Receipt
1. What is the Agency finalizing?
Under this final rule, a project
proponent must submit a certification
request to a certifying authority to
initiate an action under section 401.
Consistent with the text of the CWA, the
final rule provides that the statutory
timeline for certification review starts
when the certifying authority receives a
‘‘certification request,’’ rather than
when the certifying authority receives a
‘‘complete application’’ or ‘‘complete
request’’ as determined by the certifying
authority. After considering public
comments, the final rule has been
revised to provide a general definition
of ‘‘certification request’’ and provide
two different lists of documents and
information that must be included in a
certification request: One list for
individual licenses and permits and a
separate list for the issuance of a general
license or permit. The certification
request requirements, as well as other
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provisions of the final rule tailored to
the issuance of general licenses and
permits, are described in detail in
section III.M of this notice.
To better account for water quality
certifications required for general
licenses or permits, the definition of
‘‘project proponent’’ has been modified
as follows pursuant to section 121.1(j) of
the final rule:
Project proponent means the
applicant for a license or permit or the
entity seeking certification.
This final rule’s definition of ‘‘project
proponent’’ extends all of the
substantive and procedural
requirements in this final rule to federal
agencies seeking certification for a
general license or permit.
Pursuant to section 121.1(c) of the
final rule,
Certification request means a written,
signed, and dated communication that
satisfies the requirements of section
121.5 (b) or (c).
Section 121.5(b) of the final rule
includes an enumerated list of
documents and information that must
be included in a certification request for
an individual license or permit,
including the seven components from
the proposed rule and two new
components. A certification request
must include all components to start the
statutory clock. A certification request
submitted for an individual license or
permit shall:
1. Identify the project proponent(s)
and a point of contact;
2. identify the proposed project;
3. identify the applicable federal
license or permit;
4. identify the location and nature of
any potential discharge that may result
from the proposed project and the
location of receiving waters;
5. include a description of any
methods and means proposed to
monitor the discharge and the
equipment or measures planned to treat,
control, or manage the discharge;
6. include a list of all other federal,
interstate, tribal, state, territorial, or
local agency authorizations required for
the proposed project, including all
approvals or denials already received;
7. include documentation that a prefiling meeting request was submitted to
the certifying authority at least 30 days
prior to submitting the certification
request;
8. contain the following statement:
‘The project proponent hereby certifies
that all information contained herein is
true, accurate, and complete, to the best
of my knowledge and belief’; and
9. contain the following statement:
‘The project proponent hereby requests
that the certifying authority review and
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take action on this CWA 401
certification request within the
applicable reasonable period of time.’
The statutory reasonable period of
time for a certifying authority to act on
a certification request begins when the
certifying authority is in ‘‘receipt of
such request.’’ The EPA is finalizing the
definition of the term ‘‘receipt’’ as
proposed:
Receipt means the date that a
certification request is documented as
received by a certifying authority in
accordance with applicable submission
procedures.
Together, these provisions will
provide greater certainty for project
proponents, certifying authorities, and
federal agencies concerning when the
reasonable period of time has started.
Each of these provisions is discussed in
greater detail below.
2. Summary of Final Rule Rationale and
Public Comment
The Act places the burden on the
project proponent to obtain a section
401 certification from a certifying
authority in order to receive a federal
license or permit. As discussed in the
preamble to the proposed rule, the
section 401 certification process begins
on the date when the certification
request is received by a certifying
authority. The statute limits the time for
a certifying authority to act on a request
as follows:
If the State, interstate agency, or
Administrator, as the case may be, fails or
refuses to act on a request for certification,
within a reasonable period of time (which
shall not exceed one year) after receipt of
such request, the certification requirements
of this subsection shall be waived with
respect to such Federal application.
33 U.S.C. 1341(a)(1) (emphasis
added). The plain language of the Act
requires that the reasonable period of
time to act on certification not extend
beyond one year after the receipt of the
certification request. The statute,
however, does not define those terms.
As discussed in the preamble to the
proposed rule, because they are not
defined and their precise meaning is
ambiguous, these terms are susceptible
to different interpretations. This
ambiguity has resulted in inefficiencies
in the certification process; individual
certification decisions that have
extended beyond the statutory
reasonable period of time; regulatory
uncertainty; and litigation. See section
II.F of this notice. As the Agency
charged with administering the CWA,
the EPA is authorized to interpret
through rulemaking undefined terms,
including those associated with CWA
section 401 certifications. See Chevron,
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U.S.A., Inc. v. Natural Resources
Defense Council, Inc., 467 U.S. 837, 844
(1984). Given the large number of
certification requests submitted each
year 54 and the statutory requirement
that those requests be acted on within
a reasonable period of time not to
exceed one year, the EPA is finalizing
definitions for the terms ‘‘certification
request’’ and ‘‘receipt’’ to provide
project proponents, certifying
authorities, and federal agencies with
clear regulatory text stating when the
statutory reasonable period of time
begins.
The EPA is finalizing a definition for
‘‘certification request’’ that requires a
written, signed, and dated
communication that satisfies the
requirements of section 121.5(b) or (c) of
the final rule. A certification request
that meets the requirements of the final
rule begins the certifying authority’s
reasonable period of time. The structure
of the final rule is somewhat different
than the proposal because, as described
above, the final rule contains two
separate lists for certification requests;
however, the purpose and function of
the ‘‘certification request’’ remains
consistent with the proposal.
Commenters provided numerous
recommendations for what should be
included in a certification request,
including but not limited to information
on prior contamination at the project
site, payment of applicable fees, specific
project proponent contacts, specific
geographic information, construction
and mitigation plans, engineering plans,
sediment sampling plans, aquatic
resources and their condition, the
characteristics of the discharge,
description of all affected wetlands and
waters, State-listed species information
and habitat assessments, baseline data
and information, and the complete
federal license or permit application, as
well as a statement from the project
proponent that all information is true
and correct. Conversely, a few
commenters recommended removing
the specific components of a
‘‘certification request’’ and argued that
the proposed information was not
necessary for a certifying authority to
act on a request for certification. The
EPA considered all of these comments
and made some modifications in the
final rule. The final definition of
‘‘certification request’’ requires that the
project proponent’s written submission
contain the components identified in
either section 121.5(b) or (c) of the final
rule.
Section 121.5(b) of the final rule
addresses certification requests
54 See
section 2 of the Economic Analysis.
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submitted by project proponents, as the
term is defined in the final rule, and it
requires the seven components listed in
the proposed definition, with a slight
modification in one component, as well
as two additional components: A
statement that all information contained
in the request is true, accurate, and
complete to the best of the project
proponent’s knowledge, and
documentation that a pre-filing meeting
request was submitted to the certifying
authority at least 30 days prior to
submitting the certification request.
These additional components are
discussed further below. The Agency
has modified the fourth factor in the
final rule to require project proponents
to identify the location and the nature
of any potential discharge that may
result from the proposed project and the
location of receiving waters. This
modification clarifies that project
proponents should identify the nature of
the discharge, including (as appropriate)
the potential volume, extent, or type of
discharge associated with the proposed
project. This modification is similar to
the modification made in the factors to
be considered by a federal agency when
setting the reasonable period of time.
See section III.F for further discussion.
The inclusion of this information will
provide the certifying authority with
clear notice that the project proponent
has submitted a certification request and
a sufficient baseline of information to
allow it to begin its evaluation in a
timely manner.
The Agency requested comment on
whether it should include a reference to
‘‘any applicable fees’’ among the
components of its definition of a
certification request. Many commenters
stated that a certifying authority’s
applicable fees should be a required
element in the final rule. One
commenter suggested that applicable
fees for a section 401 certification might
be affected by the type of federal license
or permit for which they are applying.
After considering all of the public
comments on this issue and conducting
additional research into whether and
how certifying authorities may require
fees for section 401 certifications, the
EPA has decided not to include a
reference to fees in the enumerated list
of elements of a certification request.
States vary in how and when they
require fees in the certification process.
They have different fee structures and
different requirements for the timing of
paying a certification-related fee. The
Agency encourages the project
proponent and the certifying authority
to discuss during the pre-filing meeting
the certifying authority’s fee structure
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and the project proponent’s obligation,
if any, to pay a fee related to the section
401 certification. Given the States’
differing practices in this area, the final
rule does not include proof of fee
payment as a required component of a
certification request to trigger the
statutory timeframe for State or Tribal
action.
Consistent with the proposal, the final
rule requires a project proponent to
identify the location of any potential
discharge in the certification request. To
meet this requirement, the EPA
recommends that the project proponent
provide locational information about the
extent of the project footprint and all
potential discharge locations, as shown
on design drawings and plans. The EPA
recommends that project proponents be
prepared to provide underlying
geographic data such as shapefiles or
geodatabases. Alternatively, the project
proponent should consider identifying
potential discharge locations on hard
copy maps. The Agency acknowledges
that the appropriate format and method
to identify potential discharge locations
may change with evolving technology
and recommends that project
proponents and certifying authorities
discuss the best approach to providing
the information required for the
certification request.
The EPA received comments from the
public and feedback from other federal
agencies that the categories of
information identified in the proposed
definition of certification request may
not be appropriate for a federal agency
seeking section 401 certification for a
general license or permit. For example,
at the time of certification, a federal
agency may not know the location of
every potential discharge that may in
the future be covered under a general
license or permit. In response to these
comments and to improve the utility
and clarity of the final rule, the Agency
is also finalizing in section 121.5(c) of
the final rule a separate list of
documents and information required for
a ‘‘certification request for issuance of a
general license or permit.’’ See section
III.M of this notice for further discussion
of the certification process for general
licenses or permits.
The Agency received public
comments emphasizing the efficiencies
that can be gained by federal agencies
issuing general licenses and permits,
such as general NPDES permits issued
by the EPA and Nationwide or Regional
section 404 general permits issued by
the Corps. A few commenters stated that
federal agencies should follow
procedures that are consistent with
other project proponents when
submitting certification requests and
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complying with other aspects of the
rule. The EPA agrees with commenters
that consistent procedural and
substantive requirements for all water
quality certifications would promote
regulatory certainty for project
proponents, federal agencies, and
certifying authorities and has modified
the final rule definition of ‘‘project
proponent’’ to promote consistent water
quality certifications. Section 121.1(j) of
the final rule defines ‘‘project
proponent’’ to mean ‘‘the applicant for
a license or permit or the entity seeking
certification.’’ With this modified
definition, the final rule clarifies that
federal agencies that issue general
licenses or permits must comply with
all of the procedural and substantive
requirements of this final rule.
Consistent with the proposal, sections
121.5(b) and (c) of the final rule include
the following statement—‘‘The project
proponent hereby requests that the
certifying authority review and take
action on this CWA 401 certification
request within the applicable reasonable
period of time.’’ This requirement is
intended to remove any potential
ambiguity on the part of the certifying
authority about whether the written
request before it is, in fact, a
‘‘certification request’’ that triggers the
statutory timeline. One commenter
noted that, if a project proponent is
uncertain whether the certifying
authority will be able to certify its
project within the reasonable period of
time, the project proponent could
submit a non-compliant certification
request that omits one or more
components, which would prevent the
reasonable period of time clock from
starting. The Agency agrees with this
commenter that if a project proponent
does not submit a certification request
as defined at section 121.5(b) of the final
rule, then the reasonable period of time
does not begin. The Agency encourages
pre-filing meetings, engagement, and
information sharing between project
proponents and certifying authorities,
but such engagement does not start the
reasonable period of time unless a
certification request, as defined in the
final rule, is submitted to the certifying
authority.
Sections 121.5(b) and (c) of the final
rule include two additional provisions
that were not in the proposed rule: A
statement that all information contained
in the certification request is true,
accurate, and complete to the best of the
requester’s knowledge and belief, and
documentation that a pre-filing meeting
request was submitted to the certifying
authority at least 30 days prior to
submitting the certification request.
Both requirements are intended to
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create additional accountability on the
part of the project proponent to ensure
that information submitted in a
certification request accurately reflects
the proposed project, and to ensure that
the project proponent has complied
with the requirement to request a prefiling meeting with the certification
authority. If a certification request does
not include these components, it does
not meet the conditions of section
121.5(b) or (c) of the final rule and it
does not start the statutory clock.
Notwithstanding the text of section
401(a)(1), which refers to a ‘‘request for
certification,’’ some commenters
asserted that requiring a ‘‘certification
request,’’ as opposed to a ‘‘complete
application,’’ contravened congressional
intent and cooperative federalism, and
represented a change in the EPA’s
longstanding practice. As discussed in
the preamble to the proposed rule,
section 401 does not use the term
‘‘complete application’’ or prescribe
what a ‘‘certification request’’ would
require. The reference in prior EPA
guidance to a ‘‘complete application,’’
without explaining what an
‘‘application’’ must include, has led to
inconsistent and subjective
determinations about the sufficiency of
certification request submittals. This, in
turn, has caused uncertainty about
when the statutory reasonable period of
time begins to run. The Agency is
authorized to interpret ambiguous
statutory terms, see Chevron, 467 U.S. at
844, and is finalizing what it deems the
most appropriate, reasonable
interpretation of ‘‘certification request’’
to reduce uncertainty and enable project
proponents and certifying authorities to
objectively and transparently
understand which submittals start the
reasonable period of time.
Some commenters also asserted that a
standardized definition of ‘‘certification
request’’ cannot capture all of the kinds
of information necessary for the
certifying authority to make an informed
decision on a certification request. They
expressed concern that project
proponents would be incentivized to
circumvent a certifying authority’s
meaningful review by not providing
additional information. Additionally,
some commenters suggested that
certifying authorities should be given
the flexibility to develop their own
definition of a ‘‘request’’ or
‘‘application’’ to meet their applicable
State and Tribal laws and needs. While
the Agency acknowledges these
commenter concerns, the EPA disagrees.
As discussed above, the Agency is
authorized to interpret the term
‘‘certification request’’ because the Act
does not define the term, nor does it
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prescribe the amount of information that
must be included in a certification
request. See Chevron, 467 U.S. at 844.
In this final rule, the Agency is
interpreting ‘‘certification request’’ to
include components that the Agency
believes are necessary to provide a
certifying authority with clear notice
that a request has been submitted and a
sufficient baseline of information for the
certifying authority to begin its review.
It is important to distinguish between
the amount of information appropriate
to start the certifying authority’s
reasonable period of time and the
amount of information that may be
necessary for the certifying authority to
take final action on a certification
request. The components of a
‘‘certification request’’ identified in the
final rule are intended to be sufficient
information to start the reasonable
period of time but may not necessarily
represent the totality of information a
certifying authority may need to act on
a certification request. Nothing in the
final rule’s definition of ‘‘certification
request’’ precludes a project proponent
from submitting additional, relevant
information or precludes a certifying
authority from requesting and
evaluating additional information
within the reasonable period of time
(see section III.H of this notice for
specific procedures when the EPA is the
certifying authority). Indeed, in many
cases it may be in the interest of the
project proponent and may provide a
more efficient certification process if
relevant information about the discharge
and potential impacts to the receiving
waters is provided to the certification
authority early in the certification
process.
As discussed in section III.B of this
notice, the Agency is finalizing a prefiling meeting request requirement for
all project proponents, including federal
agencies when they seek a section 401
certification for general licenses or
permits. The Agency is including a
documentation requirement for the prefiling meeting as a component of a
certification request to ensure that
certifying authorities are given an
opportunity to engage in early
discussions with project proponents and
federal agencies, if desired. The Agency
encourages project proponents and
certifying authorities to use the prefiling meeting to discuss the proposed
project and to determine what
information (if any), in addition to that
required to be submitted as part of the
‘‘certification request,’’ may be needed
to enable the certifying authority to take
final action on the certification request
in the reasonable period of time. The
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certifying authority may also take this
opportunity to discuss any other State
or Tribal permits that may be applicable
or required for the proposed project.
Although some commenters requested
that the Agency include more detailed
certification request components, the
Agency believes additional detailed
information is best ascertained through
pre-filing meetings and engagement
during the reasonable period of time. If
pre-filing meetings, discussions, and
submittals during the reasonable period
of time fail to produce the information
necessary for a certifying authority to
grant certification or grant certification
with conditions, the final rule reaffirms
that certifying authorities retain the
ability to deny or waive a certification
request. It is important to reiterate that
the burden is on the project proponent
to submit a certification request to the
certifying authority and work
cooperatively to provide additional
information as appropriate to facilitate
the certification process. Likewise, the
burden is on the certifying authority to
evaluate the certification request in
good faith and to request information,
documents, and materials that are
within the scope of section 401 as
provided in this final rule and that can
be produced and evaluated within the
reasonable period of time.
The Agency also disagrees with
commenters who asserted that the
proposed definition of ‘‘certification
request’’ would narrow State authority,
that it contradicted the goals and
purpose of the CWA, and that it was
contrary to the plain language of section
401. The term ‘‘request’’ is not defined
in the Act. As discussed above, the
Agency is authorized to interpret
ambiguous statutory terms, and believes
the final definition of ‘‘certification
request’’ and the provisions in sections
121.5(b) and (c) of the final rule will
provide needed clarity and help ensure
that certifying authorities have
sufficient notice and information to
begin their evaluation of a certification
request. The final rule does not limit the
ability of a certifying authority to
communicate with project proponents
and to identify and request additional
information necessary to take an
informed action on a certification
request in the reasonable period of time.
Indeed, by providing greater clarity on
when the statutory reasonable period of
time begins and by encouraging early
and constructive dialogue between
project proponents and certifying
authorities, the final rule facilitates a
certifying authority’s efforts to protect
waters of the United States within its
borders within the timeframe mandated
by Congress.
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A number of commenters provided
examples of projects that had been
delayed because a certifying authority
repeatedly requested additional
information before a certification
request would be considered
‘‘complete.’’ These commenters asserted
that these types of repeated requests for
additional information undermine the
statutory requirement to act on a
certification request within a reasonable
period of time, not to exceed one year.
Other commenters asserted that a
certifying authority cannot reasonably
act on a certification request based only
on the information required by the
proposed rule. The EPA acknowledges
the desire for certifying authorities to
have all necessary information as soon
as possible in the certification process,
but the Agency must balance that desire
while remaining loyal to the statutory
requirement for timely action on a
request. The Agency believes that its
final rule strikes the appropriate balance
by identifying the kinds of information
that provide a reasonable baseline about
any project while recognizing the ability
of certifying authorities and project
proponents to request and provide
additional information both before and
after the review clock starts.
The Agency also sees the value in
finalizing certification request
components that are objective and do
not require subjective determinations by
a certifying authority about whether the
request submittal requirements have
been satisfied. A certification request
must have all components listed at
section 121.5(b) or (c) of the final rule
to start the statutory reasonable period
of time. If any of the components of
section 121.5(b) or (c) of the final rule
is missing from the certification request,
the statutory reasonable period of time
does not start. With respect to the
component of a certification request for
project proponents at section 121.5(b)(5)
of the final rule, the EPA acknowledges
that not all proposed projects may be
subject to monitoring or treatment for a
discharge (e.g., section 404 dredge or fill
permits rarely allow for a treatment
option). The final rule has been
modified slightly to add the word
‘‘manage’’ to broaden the scope of
information that may be provided by
project proponents. However, if a
project is not subject to monitoring,
treatment, or management requirements
for its discharge, the project proponent
should state that in the certification
request. The effect of such statement
would be to make that component
inapplicable to that project. Many
commenters expressed concern that the
proposed components of a certification
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request would require subjective
determination regarding the appropriate
level of detail. However, the Agency
believes that the final certification
request components do not require a
subjective inquiry into their sufficiency
or any inquiry beyond whether they
have been provided in the request.
The final rule requires a certification
request to include a statement that, to
the best of the project proponent’s
knowledge and belief, all information
contained in the request is true,
accurate, and complete. This
requirement is intended to ensure that
project proponents are making a goodfaith effort to provide the certifying
authority with accurate information
necessary to begin its evaluation of the
certification request. Additionally, as
discussed above, the EPA anticipates
that the project proponent and the
certifying authority will coordinate
information needs before and
throughout the reasonable period of
time, if necessary. The EPA expects that
the project proponent both will provide
a certification request that includes the
components identified in the final rule
and will engage with the certifying
authority, as requested, to understand
and respond to appropriate and
reasonable additional information
requests that are within the scope of
section 401 and can be generated and
reviewed within the reasonable period
of time. For its part, the EPA expects
that the certifying authority will act
within the scope of section 401, as
provided in the CWA and in this final
rule.
The EPA solicited comment on
whether the Agency should generate a
standard form for all certification
requests. Most commenters did not
support the development of a standard
form and noted that most States have
their own forms for ‘‘complete
applications.’’ At this time, the Agency
is not developing a standard form for
project proponents to use to submit
certification requests, but notes that
States and Tribes that wish to continue
using standard forms may choose to
update those forms to be consistent with
the final definition of ‘‘certification
request.’’ The Agency may consider
developing such forms in the future, if
useful to project proponents and
certifying authorities.
Some commenters asked for
clarification on the practical effect on
the review clock of a project
proponent’s independently withdrawing
a certification request by its own choice
and not at the request of a certifying
authority. If a project proponent
withdraws a certification request
because the project is no longer being
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planned or if certain elements of the
proposed project materially change from
what was originally proposed or from
what is described or analyzed in
additional information submitted by the
project proponent, it is the EPA’s
interpretation that the certifying
authority no longer has an obligation to
act on that request. To avoid scenarios
like those presented in Hoopa Valley
and to address the EPA’s policy concern
that section 401 certification delays also
delay implementation of updated State
and Tribal water quality standards and
other requirements, the EPA expects
that voluntary withdrawal by the project
proponent will be done sparingly and
only in response to material
modifications to the project or if the
project is no longer planned. In these
circumstances, if the project proponent
seeks to obtain a certification in the
future, the project proponent must
submit a new certification request. At a
minimum, the project proponent would
have to wait 30 days before resubmitting a certification request,
because under the final rule project
proponents must request a pre-filing
meeting at least 30 days before
submitting a certification request, and
voluntary withdrawal by a project
proponent of a prior certification
request does not obviate this pre-filing
requirement. For further discussion
about project proponent withdrawal, see
section III.F of this notice.
Commenters asked the Agency to
clarify when a change in the proposed
project would be so significant that it
would require a new request. Many
commenters asserted that the proposed
rule would prevent extending the
reasonable period of time even though
the scope of the project changes during
the reasonable period of time. Other
commenters noted that the proposed
rule did not account for project changes
that may result from the federal license
or permit review processes. A couple of
commenters stated that the EPA should
provide guidance to federal agencies on
when a new certification request would
be necessary based on the type and
change in a project’s scope, while one
commenter asked the Agency to clarify
whether projects that change in scope or
design require a new certification.
After considering public comments on
this issue, the final rule does not
identify each circumstance that may
warrant the submission of a new
certification request because the Agency
believes that such circumstances are
best addressed on a case-by-case basis.
However, if certain elements of the
proposed project (e.g., the location of
the project or the nature of any potential
discharge that may result) change
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materially after a project proponent
submits a certification request, it may be
reasonable for the project proponent to
submit a new certification request.
Administrative changes, such as a
change in the point of contact or the list
of other required permits, and minor
changes to the proposed project, such as
those that do not change the project
footprint in a material way, should not
warrant the submission of a new
certification request. The EPA
recognizes that complex projects that
are subject to multi-year federal
licensing or permitting procedures may
change over time as a result of those
federal procedures. From a practical
standpoint, the EPA encourages project
proponents to maintain close
coordination and communication with
certifying authorities and recommends
that the project proponent provide
information about any project changes
to the certifying authority regardless of
when the change occurred or whether a
certification has already been issued by
the certifying authority. As an
additional measure, the Act and the
final rule provide certifying authorities
with the opportunity to inspect a
certified project prior to initial
operation to ensure the project will
comply with the certification.
The Agency is finalizing the
definition of ‘‘receipt’’ as proposed, so
as to provide clarity for project
proponents and certifying authorities
about when the certification request is
deemed received and the statutory clock
begins. The CWA does not define the
term ‘‘receipt of such request’’ in section
401(a)(1), which has led States, Tribes,
and project proponents, as well as
courts, to use different definitions.
‘‘Receipt of the request’’ has been used
alternately to mean receipt by the
certifying authority of the request in
whatever form it was submitted by the
project proponent, or receipt of a
‘‘complete application’’ as determined
by differing regulations established by
certifying authorities. The statute also
does not specify how requests are to be
‘‘received’’ by the certifying authority—
whether by mail, by electronic
submission, or some other means. The
EPA understands that some certifying
authorities have established general
submission procedures for project
proponents to follow when seeking
State or Tribal licenses or permits. The
EPA encourages the use of consistent
procedures for all submittals, including
section 401 certification requests. The
final rule requirement that certification
requests be documented as received ‘‘in
accordance with applicable submission
procedures’’ is intended to recognize
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that certifying authorities may have
different procedures for submission of
requests established in State or Tribal
law. For instance, some certifying
authorities may require hard copy paper
submittals, while others may require or
allow electronic submittals. If the
certifying authority accepts hard copy
paper submittals, the EPA recommends
that the project proponents submitting a
hard copy request send the request via
certified mail (or similar means) to
confirm receipt of the certification
request. If the certifying authority
allows for electronic submittals, the
EPA recommends that the project
proponent set up an electronic process
to confirm receipt of the request.
Nothing in the final rule precludes the
use of electronic signatures when
deemed appropriate by the certifying
authority. The EPA recommends that
project proponents retain a copy of any
written or electronic confirmation of
submission or receipt for their records.
One commenter disagreed with the
suggestion that the word ‘‘receipt’’ is
ambiguous but nonetheless agreed with
the proposed rule because, this
commenter asserted, states have made
efforts to evade the one-year reasonable
period of time. For the reasons
explained above, EPA disagrees with the
commenter and concludes that the word
is ambiguous. Another commenter
stated that section 401 does not require
certifying authorities to act ‘‘upon’’
receipt of a request, but ‘‘after’’ receipt
of a request. This commenter is correct
that the statute requires certifying
authorities to act on a certification
request ‘‘within a reasonable period of
time (which shall not exceed one year)
after receipt of such request.’’ As
discussed above, the Agency has the
authority to interpret ambiguous
statutory terms, including the terms
‘‘request’’ and ‘‘receipt of such request.’’
The Agency has defined ‘‘receipt’’ to
mean ‘‘the date that a certification
request is documented as received by a
certifying authority in accordance with
applicable submission procedures.’’
Therefore, under the EPA’s final rule,
the statutory clock begins on the date
when the certification request is
documented as received by the
certifying authority.
Some commenters recommended that
‘‘receipt’’ should mean the date when a
certification request and all materials
required by State or Tribal law are
documented as received by a certifying
authority in accordance with applicable
submission procedures. The Agency
disagrees with these commenters. The
EPA is aware that some States have
regulations establishing what should be
in a request for certification and when
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it will be considered ‘‘complete.’’ For
instance, the California Code of
Regulations states: ‘‘Upon receipt of an
application, it shall be reviewed by the
certifying agency to determine if it is
complete. If the application is
incomplete, the applicant shall be
notified in writing no later than 30 days
after receipt of the application, of any
additional information or action
needed.’’ Cal. Code Regs. tit. 23, 3835(a).
The EPA also notes that some State
regulations may require the completion
of certain processes, studies, or other
regulatory milestones before it will
consider a certification request
‘‘complete.’’ Although the CWA
provides flexibility for certifying
authorities to follow their own
administrative procedures, particularly
for public notice and comment, see 33
U.S.C. 1341(a), these procedures cannot
be implemented in such a manner as to
violate the CWA. The Act requires the
timeline for review to begin ‘‘after
receipt’’ of a certification request,
notwithstanding any completeness
determination procedure, and it requires
certifications to be processed within a
‘‘reasonable period of time (which shall
not exceed one year.’’).
One principal goal of this rulemaking
is to provide additional clarity and
certainty about the certification process,
including when the reasonable period of
time begins. Establishing a consistent
and objective list of information
necessary to start the statutory
reasonable period of time is necessary to
achieve that goal. As discussed above,
the Agency has defined the elements
necessary to provide the certifying
authority with sufficient notice and
information to begin to evaluate a
request for certification. If there are
additional information needs aside from
the finalized components provided in a
certification request, the certifying
authority and project proponent may
discuss those needs during the pre-filing
meeting (see section III.B of this notice)
or during the reasonable period of time.
The requirement that certification
requests be received ‘‘in accordance
with applicable submission procedures’’
cannot be used by certifying authorities
to introduce unreasonable delay
between when an agency receives a
certification request and when ‘‘receipt’’
occurs, as this would contravene this
final rule.
Many commenters expressed concern
that the proposal lacked any
requirement that a request be
‘‘administratively complete.’’ One
commenter asserted that without a
robust administrative record on which
to rely, certifying authorities would be
more vulnerable to successful
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challenges of their certification
determinations. The final rule
establishes that a certification request is
administratively complete when it
contains the items set forth in section
121.5(b) or (c). The final rule requires
that the project proponent request a prefiling meeting with the certifying
authority before submitting the
certification request, thereby providing
that certifying authority the opportunity
to discuss any additional informational
needs it may have. If a project
proponent fails to supply the certifying
authority with information necessary to
assure that the discharge from the
proposed project complies with the
water quality requirements, the
certifying authority may so specify in a
denial of the certification. If the
certifying authority requests information
from the project proponent that is
beyond the scope of section 401, the
project proponent’s remedy lies with a
court of competent jurisdiction. To
avoid situations where the certifying
authority requests information from
project proponents that cannot be
developed and submitted within the
reasonable period of time, the EPA
recommends that both the project
proponent and the certifying authority
work in good faith, consistent with
section 401, and have early and
sustained coordination and
communication to streamline the overall
certification process.
Some commenters asserted that under
the proposed rule, the federal agency
would not have a reliable way to
determine whether a certifying authority
has received a request because the
proposed rule required only project
proponents, and not certifying
authorities, to alert federal agencies
when a project proponent had
submitted a certification request. Project
proponents have the burden of
requesting certification from a certifying
authority and for providing federal
agencies with the certification to help
fulfill the requirements of a federal
license or permit. After reviewing
public comments, the Agency has
decided not to finalize the requirement
proposed at section 121.4(b) in order to
provide all interested parties with
greater clarity and a common
understanding regarding the status of a
certification request. To effectuate
notice of a certification request at the
earliest point in time, section 121.5(a) of
the final rule requires a project
proponent to submit a certification
request to the appropriate certifying
authority and the federal licensing or
permitting agency concurrently.
Including this requirement in the final
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rule will provide the federal agency
with notification about a certification
request and sufficient information to
determine the reasonable period of time
for that certification request. This
process will also address commenter
concerns by providing federal agencies
and certifying authorities with a
concurrent notice when a certification
request is received. As discussed above,
the Agency recognizes that certifying
authorities may have different
submission procedures and
recommends that project proponents
submit copies to the federal agency in
a manner consistent with the certifying
authority’s submission procedures, to
ensure that the request is received at the
same time. The final rule requires the
federal agency to communicate the
reasonable period of time to the
certifying authority within 15 days of
receiving the certification request from
the project proponent in accordance
with section 121.5(a) of the final rule.
The EPA expects federal licensing and
permitting agencies to provide the
notice required in this final rule and
strongly encourages federal agencies to
promulgate or update agency-specific
regulations to implement CWA section
401 and this final rule. However, in the
unlikely event that the federal agency
does not provide the required notice,
the EPA recommends that certifying
authorities assume that the federal
agency’s promulgated default reasonable
period of time applies (e.g., the Corps’
60 days). If the federal agency fails to
provide notification and has not
promulgated a default or categorical
reasonable period of time, the Agency
recommends that certifying authorities
assume the reasonable period of time
expires one year from the date the
certification request was received. The
Agency recommends that all parties
retain copies of certification requests for
their records in case there is any
misunderstanding about the beginning
of the reasonable period of time.
EPA acknowledges that many States
and Tribes have established their own
requirements for section 401
certification request submittals, which
may be different from or more extensive
than the ‘‘certification request’’
requirements set forth in this final rule.
However, these additional requirements
should not be used to expand the
certification request requirements in
this final rule, which are intended to
establish clear expectations for
certifying authorities and project
proponents, and which provide a
transparent and consistent framework
for when the reasonable period of time
begins. The EPA notes that certifying
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authorities may update their existing
section 401 certification regulations to
be consistent with the EPA’s
regulations. Additionally, the EPA
observes that certifying authorities may
wish to work with neighboring
jurisdictions to develop regulations that
are consistent from State to State. This
may be particularly useful for interstate
projects, like pipelines and transmission
lines, requiring water quality
certifications from more than one State.
Some commenters requested
additional clarification about when
project proponents should submit a
certification request, relative to the
timelines in federal licenses or permits
or other federal laws. One commenter
stated it would be helpful to specify a
point in the federal permitting timeline
when project proponents should submit
a certification request. The commenter
suggested that this point in time should
be based on when States would have
adequate information to make a
certification decision. One commenter
explained that if a State is required to
issue section 401 certification before
NEPA environmental documentation is
complete and made available, the State
would have to initiate state
environmental review before NEPA
documents are available, which is an
unnecessarily burdensome approach for
both the State and the applicant. Other
commenters noted that the proposed
rule could place an unnecessary burden
on States and Tribes if an EIS results in
a no action alternative being chosen, but
the State or Tribe has already expended
resources to complete a section 401
certification. The EPA also observes that
some federal permit or license
procedures can be lengthy and can
result in project modifications in the
early stages of the process.
The Agency is not prescribing a
specific point in a federal licensing or
permitting process when project
proponents are required to submit a
certification request. The Agency is
aware that FERC’s regulations already
establish when during the hydropower
licensing process a project proponent
may request certification. Specifically,
FERC’s regulations require project
proponents to complete a years-long
process that includes environmental
studies and reviews before a project
proponent may request certification for
that federal license. See 18 CFR 5.22,
5.23. The Agency encourages all federal
licensing and permitting agencies to
evaluate their programs and processes
and to consider promulgating or
updating their section 401
implementing regulations to specify
when a section 401 certification request
should be submitted. Providing
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additional specificity and procedures
for project proponents may reduce the
duplication of work between federal,
State and Tribal authorities and may
make the certification process more
efficient. In the absence of formal
guidance or rulemaking from the
appropriate federal licensing or
permitting agency, the EPA
recommends that project proponents,
certifying authorities, and federal
agencies coordinate and discuss the
appropriate timing for a section 401
certification request in light of the
federal licensing or permitting process
and other project approval
requirements.
D. Certification Actions
1. What is the Agency finalizing?
Consistent with the text of the CWA,
under the final rule a certifying
authority may take one of four actions
pursuant to its section 401 authority:
Grant certification, grant certification
with conditions, deny certification, or
waive its opportunity to provide a
certification. These actions are reflected
in section 121.7 of the final regulatory
text. Any action by the certifying
authority to grant, grant with
conditions, or deny a certification
request must be within the scope of
certification (see section III.E of this
notice), must be completed within the
established reasonable period of time
(see section III.F of this notice), and
must otherwise be in accordance with
section 401 of the CWA (see section
III.G of this notice). Alternatively, a
certifying authority may expressly
waive the certification requirement.
Under the final rule, certifying
authorities may also implicitly waive
the certification requirement by failing
or refusing to act (see section III.G.2.d of
this notice). All certification actions
must be in writing, and the contents and
effects of such actions are discussed
below in section III.G of this notice. The
final rule is consistent with the
Agency’s longstanding interpretation of
what actions may be taken in response
to a certification request.
2. Summary of Final Rule Rationale and
Public Comment
Under the final rule, if the certifying
authority determines that the discharge
from a proposed project will comply
with specific provisions enumerated in
CWA section 401(a) and with other
appropriate State or Tribal water quality
requirements, it may grant that
certification with or without conditions,
as appropriate. To provide additional
clarity, section 121.1(n) of the final rule
defines ‘‘water quality requirements’’
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(see section III.E.2.b of this notice for
further discussion of this definition). If
the certifying authority cannot certify
(with or without conditions) that the
discharge from a proposed project will
comply with ‘‘water quality
requirements,’’ it may either deny or
waive certification. There may be
multiple reasons why a certifying
authority is unable to certify, including
a lack of resources for reviewing the
certification request, higher priority
work that the certifying authority must
attend to, or evidence that the discharge
will not comply with ‘‘water quality
requirements.’’ Under the former
circumstances, waiver would be
appropriate; and under the latter
circumstance, denial would be
appropriate.
a. Grant
When a certifying authority grants a
section 401 certification, it has
concluded that the potential point
source discharge into waters of the
United States from the proposed project
will be consistent with ‘‘water quality
requirements.’’ Granting certification
allows the federal agency to proceed
with issuing the license or permit.
b. Grant With Conditions
If the certifying authority determines
that the potential discharge from a
proposed project would be consistent
with ‘‘water quality requirements’’ only
if certain conditions are met, the
authority may include such conditions
in its certification. Where the certifying
authority grants certification with
conditions in accordance with section
401 and this final rule, the federal
agency may proceed to issue the license
or permit. Certification conditions that
satisfy the requirements of this final rule
must be incorporated into the federal
license or permit, if issued, and become
federally enforceable.
c. Deny
A certifying authority may deny
certification if it is unable to certify that
the potential discharge from a proposed
project would be consistent with ‘‘water
quality requirements’’ as defined in this
rule. CWA section 401(a)(1) provides
that ‘‘[n]o license or permit shall be
granted if certification has been denied
by the State, interstate agency, or the
Administrator, as the case may be.’’ 33
U.S.C. 1341(a)(1).
This final rule reaffirms the ability of
a project proponent to submit a new
certification request if a previous
request is denied. Some commenters
agreed that it would always be proper to
allow project proponents to request
certification again if the certifying
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authority denied their previous
request(s). Other commenters
interpreted this provision as preventing
certifying authorities from denying with
prejudice and recommended that the
final rule explicitly allow certifying
authorities the option to deny with
prejudice. These commenters asserted
that denial with prejudice is a tool that
preserves certifying authorities’
resources in cases where they are asked
to review substantially similar
certification requests for the same
project once it has already determined
that the project cannot comply with
water quality requirements. Some
commenters argued that section 401
does not preclude certifying authorities
from denying requests with prejudice,
and that regulations that precluded
certifying authorities from doing so
would be inconsistent with the statute.
Other commenters noted that the statute
does not explicitly authorize denial
with prejudice or prevent a project
proponent from requesting a new
section 401 certification after a request
is denied. The EPA agrees that the
statute is silent on this issue. The EPA
is not aware that any other CWA
program authorizes a permit application
to be denied with prejudice or explicitly
precludes a permit applicant from reapplying for a permit after an initial
denial. For consistency with other CWA
programs, and because nothing in
section 401 prohibits a project
proponent from submitting a new
certification request after a denial is
issued, the EPA is finalizing this
provision as proposed. In the event that
a denial is issued, the EPA recommends
that the project proponent discuss with
the certifying authority whether project
plans could be altered or whether
additional information could be
developed to demonstrate that the
discharge from the proposed project will
comply with applicable water quality
requirements upon submittal of a new
certification request.
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d. Waive
Under the final rule, a certifying
authority may waive its opportunity to
certify in two ways (see section 121.9(a)
of the final regulatory text). First, the
certifying authority may waive
expressly by issuing a written statement
that it is waiving certification. Second,
the certifying authority may implicitly
or constructively waive by failing or
refusing to act within the reasonable
period of time, failing to act in
accordance with the procedural
requirements of section 401, or failing to
act in accordance with the requirements
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in sections 121.7(c)-(e) of this rule.55 As
discussed throughout this final rule
preamble, section 401 requires a
certifying authority to act on a
certification request within a reasonable
period of time, not to exceed one year.
If the certifying authority fails or refuses
to act within that reasonable period, the
certification requirement will be
deemed waived by the federal licensing
or permitting agency. Id. As described
further in section III.G.2.d of this notice,
if a certification grant, grant with
conditions, or denial does not satisfy the
procedural requirements of this final
rule, it is waived. When a certifying
authority waives the requirement for a
certification, under this final rule the
federal agency may proceed to issue the
license or permit in accordance with its
implementing regulations.
E. Appropriate Scope for Section 401
Certification Review
1. What is the Agency finalizing?
While Congress did not provide a
single, clear, and unambiguous
definition of the appropriate scope of
section 401, the text, structure, and
legislative history of the CWA
(including the name of the statute
itself—the Federal Water Pollution
Control Act Amendments of 1972 or,
more commonly, the Clean Water Act)
demonstrate that section 401
appropriately focuses on addressing
water quality impacts from potential or
actual discharges from federally
licensed or permitted projects. The EPA,
as the federal entity charged with
administering the CWA, has authority to
reasonably resolve any ambiguity in
section 401’s scope through notice and
comment rulemaking. To accomplish
this, the Agency is finalizing as
proposed section 121.3 of the regulatory
text, which contains the following clear
and concise statement of the scope of
certification:
The scope of a Clean Water Act
section 401 certification is limited to
assuring that a discharge from a
Federally licensed or permitted activity
will comply with water quality
requirements.
The Agency is also finalizing
definitions of the terms ‘‘discharge’’ and
‘‘water quality requirements.’’ Together,
these provisions of the final rule
provide clarity on the scope of section
401. As explained in section III.A of this
notice, based on the text and structure
of the Act, as well as the history of
modifications between the 1970 version
and the 1972 amendments, the EPA has
55 As noted elsewhere in this notice, waiver of a
specific certification condition does not waive the
entire certification.
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concluded that section 401 is best
interpreted as protecting water quality
from federally licensed or permitted
activities that may result in point source
discharges into waters of the United
States. The Agency is finalizing the
definition of discharge with only one
change, replacing ‘‘navigable waters’’
with ‘‘waters of the United States’’:
Discharge for purposes of this part
means a discharge from a point source
into a water of the United States.
The Agency chose to use the more
commonly used term ‘‘waters of the
United States’’ to increase clarity in the
final rule; however, this does not change
the meaning of the definition. As
described further below, the term
‘‘water quality requirements’’ is used
throughout section 401, and the term
‘‘other appropriate requirements of State
law’’ is used in section 401(d), but
neither of these terms is defined in the
CWA. As the terms are used in the
CWA, the EPA interprets ‘‘other
appropriate requirements of state law’’
to mean a subset of ‘‘water quality
requirements.’’ To give more specific
meaning to this ambiguous and
undefined language, the final rule
defines the term ‘‘water quality
requirements’’ as follows:
Water quality requirements means
applicable provisions of sections 301, 302,
303, 306, and 307 of the Clean Water Act,
and state or tribal regulatory requirements for
point source discharges into waters of the
United States.
The final rule uses the term ‘‘water
quality requirements’’ to define the
universe of provisions that certifying
authorities may consider under sections
401(a) and 401(d). This definition has
been modified from the proposal to
provide additional clarity.
The scope of certification in section
121.3 is the foundation of the final rule.
The scope is based on the text,
structure, and legislative history of the
CWA, is informed by important policy
considerations and the Agency’s
expertise, and informs all other
provisions of the final rule. The scope
of certification provides clarity to
certifying authorities, federal agencies,
and project proponents regarding the
nature and breadth of the environmental
review that is expected and the type of
information that may reasonably be
needed to review a certification request.
The scope applies to all actions on a
certification request, including a
decision to grant, grant with conditions,
or deny. The scope of certification also
helps inform what may be a reasonable
period of time for a certifying authority
to review and act on a certification
request.
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To help ensure that section 401
certification actions are taken within the
scope of certification, the EPA is
finalizing certain requirements for
certifications in section 121.7(c) of the
final rule, certification conditions in
section 121.7(d) of the final rule, and
denials in section 121.7(e) of the final
rule. For further discussion of the
contents and effects of certification
conditions and denials, see section III.G
of this notice.
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2. Summary of Final Rule Rationale and
Public Comment
The Agency is finalizing as proposed
the scope of certification in section
121.3 of the final rule. Consistent with
the proposal, the scope of a section 401
certification in the final rule is limited
to assuring that a ‘‘discharge’’ from a
federally licensed or permitted
activity—rather than the activity as a
whole—‘‘will comply’’ with ‘‘water
quality requirements.’’ The definition of
‘‘water quality requirements’’ has been
modified in the final rule to provide
additional clarity.
a. Activity Versus Discharge
The Agency is finalizing the rule as
proposed, focusing the scope of section
401 on the discharge from a federally
licensed or permitted activity, as
opposed to the activity as a whole. As
described in section II.G.1.b of this
notice, section 401(a) explicitly
provides that the certifying authority,
described as ‘‘the State in which the
discharge originates or will originate,’’
must certify that ‘‘any such discharge
will comply with the applicable
provisions of sections 301, 302, 303, 306
and 307 of this Act’’ (emphasis added).
The plain language of section 401(a)
therefore directs authorities to certify
that the discharge resulting from the
proposed federally licensed or
permitted project will comply with the
CWA. Although section 401(d)
authorizes a certifying authority to
establish conditions to assure that the
‘‘applicant’’ will comply with
applicable water quality requirements,
the EPA does not interpret the use of
‘‘applicant’’ in section 401(d) as
broadening the scope beyond
consideration of water quality impacts
from the ‘‘discharge,’’ as set out in
section 401(a).
Some commenters asserted that the
proposed scope of review for section
401 conflicts with the language of the
CWA, applicable case law, and the
legislative history of the CWA. These
commenters asserted that the proper
scope of section 401 should include all
water quality impacts from the federally
licensed or permitted activity or the
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project as a whole. Many commenters
relied on the Supreme Court’s rationale
in PUD No. 1 and argued that the plain
language of section 401(d) is
unambiguous and reasonably read as
authorizing conditions and limitations
on the activity as a whole. Commenters
asserted that the plain meaning of the
statutory language is clear, as is the
legislative intent, and further asserted
that the EPA’s reliance on Chevron is
misplaced. Commenters claimed that
the Court in PUD No. 1 found the
statutory language unambiguous and
analyzed section 401 under Chevron
step 1 and therefore, they argue, Brand
X does not support EPA’s reanalysis of
the statutory language in a manner
contrary to the PUD No. 1 opinion.
These commenters asserted that even if
it was not a Chevron step 1 analysis, the
Court’s majority opinion is a reasonable,
holistic reading of section 401. These
commenters also asserted that the Court
did not rely on the EPA’s interpretation
of the statute, but relied on the plain
language of the statute and therefore,
they argue, Brand X does not support
the EPA’s reanalysis of the statutory
language in a manner contrary to PUD.
No. 1. Some commenters also asserted
that the proposed scope of certification
improperly departs from the EPA’s
longstanding interpretation without
providing an adequate justification.
Other commenters agreed with the
EPA’s interpretation of the statutory
language and case law analysis in the
proposed rule preamble, including the
interpretation of the scope of
certification, and agreed that section 401
is a limited grant of federal authority to
States and Tribes. These commenters
found the EPA’s interpretation of
section 401 reasonable despite their
view that it was inconsistent with the
majority opinion in PUD No.1. These
commenters also observed that the
Court in PUD No.1 did not have the
benefit of an EPA interpretation of the
1972 version of section 401.
The Agency disagrees with
commenters who asserted that the
proposed scope of certification conflicts
with the CWA, case law, and legislative
history, and disagrees with the
contention that the proposed scope was
not supported by adequate justification.
The scope of certification in the final
rule is based on the EPA’s holistic
examination of section 401 and the
legislative history. Congress’ change in
section 401(a) from ‘‘activity’’ to
‘‘discharge’’ in the 1972 amendments
reflects the ‘‘total restructuring’’ and
‘‘complete rewriting’’ of the existing
statutory framework in 1972 that
resulted in the core provisions of the
CWA that regulate discharges into
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waters of the United States. See City of
Milwaukee v. Illinois, 451 U.S. 304, 317
(1981) (quoting legislative history of
1972 amendments). See also County of
Maui, Hawaii v. Hawaii Wildlife Fund,
et al., No. 18–260, Op. at 2 (April 23,
2020). The final rule gives due weight
to Congress’ intentional choice to
change the language in section 401(a) to
ensure that ‘‘discharges’’ from federally
licensed or permitted activities, rather
than the activity as a whole, comply
with appropriate water quality
requirements.
The Agency also disagrees with
commenters who asserted that the scope
of certification is expressed
unambiguously in section 401. As
demonstrated by the variation in public
comments received, section 401 is
susceptible to a multitude of
interpretations. The EPA also disagrees
with the suggestion that the PUD No. 1
Court found section 401 to be
unambiguous. Nowhere in the opinion
does the Court conclude that section
401 is unambiguous. In fact, the
Supreme Court in PUD No. 1 offered its
own interpretation of the ambiguous
language in section 401 when it
‘‘reasonably read’’ the scope of section
401 to allow conditions and limitations
on the activity as a whole. As discussed
in detail in section II.F.4.a.i of this
notice, although the Court did not
articulate a Chevron step one or step
two analysis in its decision, the Court
did reference EPA’s 1971 certification
regulations with approval and
concluded that the EPA’s ‘‘reasonable
interpretation’’ (based on those
regulations) is entitled to deference. Id.
The Court further found the EPA’s
regulations to be consistent with the
Court’s own reasonable reading of the
language of sections 401(a) and (d). Id.
at 712. As discussed in section II.F.4.a.i
of this notice, the Court’s ‘‘reasonable
reading’’ of a statute undercuts any
argument that the statute’s text or
meaning is unambiguous.
For the first time, the EPA has
presented in this final rule the Agency’s
interpretation and analysis of section
401. The Agency’s interpretation of the
scope of section 401 as presented in
section 121.3 of this final rule is not
foreclosed by the holding in PUD No. 1.
The Court’s conclusion that section 401
applied to the activity as a whole, rather
than the discharge, did not follow from
the unambiguous terms of the statute.
Nat’l Cable & Telecomm. Ass’n v. Brand
X internet Serv., 545 U.S. 967, 982
(2005). The scope of certification in
section 121.3 of this final rule is
permissible and is based on a reasonable
interpretation of the ambiguity created
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by the different language Congress used
in sections 401(a) and 401(d) of the Act.
Some commenters supported the
alternative interpretation presented in
the proposed rule to the effect that only
the CWA sections enumerated in section
401(a) may be used as a basis for a water
quality certification denial, while
section 401(d) lists the considerations
for applying conditions to a granted
water quality certification. These
commenters stated that this approach
reflects the plain language of the CWA,
and therefore that ‘‘any other
appropriate requirement of State law’’
could be considered only when
applying conditions to a water quality
certification and cannot be grounds for
a denial. Other commenters stated that
section 401(a) and section 401(d) do not
and have never been interpreted to have
different scopes. After considering all
public comments on this and other
issues, the Agency is not finalizing the
proposed alternative interpretation. The
EPA believes that interpreting section
401 as establishing different standards
for issuing a denial under section 401(a)
and for requiring conditions under
section 401(d) is likely to lead to
implementation challenges, including
confusion by project proponents,
certifying authorities and federal
licensing and permitting agencies.
Moreover, if a certifying authority
determines that it must add conditions
under section 401(d) to justify a grant of
certification under section 401(a), that is
equivalent to deciding that—without
those conditions—it must deny
certification. The standard is therefore
essentially the same. As explained
above in this section and in section
II.F.4.a.i of this notice, the Agency is
finalizing what it has determined to be
the most appropriate, reasonable
interpretation of section 401 that is
based on a holistic analysis of section
401, the entirety of the CWA, and the
legislative history.
Some commenters argued that the
focus of the CWA 1972 amendments on
discharges does not override what they
assert are the plain terms of section 401
and accused the EPA of selectively
picking language to support a narrower
scope. Some commenters disagreed with
the EPA’s view that the proposed rule
is necessary to update EPA’s
certification regulations to conform with
the 1972 CWA amendments, and they
maintained that the EPA’s reading of the
statute is inconsistent with Supreme
Court precedent. Other commenters
agreed that the proposed rule is
necessary, as the existing water quality
certification regulations were
promulgated prior to the 1972 CWA
amendments, and these commenters
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agreed that the conflicting
interpretations that have followed the
original promulgation need to be
addressed through revised regulations.
For the reasons explained in section
II.F of this notice, the EPA concludes
that the existing certification regulations
must be updated to reflect the language
of the 1972 CWA amendments. This
final rule reflects the EPA’s holistic
review of the CWA statutory text, the
history of that text, and legislative
history, and is informed by relevant case
law. The EPA acknowledges that the
final rule’s focus on discharges, as
opposed to the activity as a whole, is
not consistent with the majority opinion
in PUD No. 1; however, the Agency’s
rationale supporting its interpretation is
grounded in the text of the statute, gives
due weight to word choices made by
Congress, and is clearly explained in the
proposed and final rule preambles.
Some commenters asserted that the
proposed rule was inconsistent with
other holdings in PUD No. 1, including
that (1) States could condition a
certification on any limitations
necessary to ensure compliance with
State water quality standards or other
appropriate requirements of State law;
(2) a minimum flow condition was an
appropriate requirement of State law;
and (3) a State’s authority to impose
minimum flow requirements would not
be limited on the theory that it
interfered with FERC’s authority to
license hydroelectric projects. The EPA
disagrees with these commenters. First,
neither the proposed rule nor the final
rule prohibits water quality-related
certification conditions that are
necessary to assure compliance with
appropriate State or Tribal law. Rather,
the rule clarifies the scope of laws that
are appropriate for consideration and as
the basis for certification conditions. As
described in this section of the notice,
the EPA made some changes in the final
rule to provide additional clarity and
regulatory certainty. Second, neither the
proposed rule nor the final rule address
minimum flow issues.
Some commenters asserted it was
inappropriate for the proposed rule to
rely on Justice Thomas’ ‘‘nonbinding’’
dissent in PUD No. 1 instead of the
holding of the majority opinion. One
commenter suggested that reliance on
the dissent exposes the EPA to legal
challenge, injecting even more
uncertainty into water quality
certification programs. For the reasons
explained in sections II.F.4.a.i, the EPA
disagrees with these commenters. The
EPA is not relying on any single judicial
opinion for its interpretation of
ambiguous statutory terms in this final
rule. Rather, the final rule reflects the
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EPA’s holistic analysis of the text,
structure, and history of CWA section
401, informed by the Agency’s expertise
developed over nearly 50 years of
implementing the CWA.
Commenters asserted that the
proposed rule would weaken the ability
of States and Tribes to protect water
quality, and some commenters asserted
that the proposed rule would lead to
negative impacts to the environment
and public health. Some commenters
asserted that the purpose of the rule is
not consistent with the CWA’s goal of
protecting and enhancing the quality of
the nation’s waters. These commenters
maintained that the proposed rule
would not facilitate States’ and Tribes’
ability to carry out their roles and
responsibilities under the CWA. Some
commenters asserted that most federally
licensed or permitted projects may
result in water quality impacts beyond
just those from a point source discharge,
and argued that the appropriate scope of
the certification is the activity and not
only the discharge. These commenters
provided examples of project impacts
that they asserted may affect water
quality but would be tangential to the
discharge itself, including increased
water withdrawals, releasing pollutants
into groundwater, increased erosion and
sedimentation, reduced stormwater
infiltration, disconnecting ecosystems,
and harming endangered species. Other
commenters expressed concern that
limiting the scope of section 401 to
discharges would not allow States and
Tribes to address indirect impacts from
the project, such as impacts resulting
from hydrological changes or increases
in impervious surfaces that result in
high-velocity runoff events that can
deposit sediment or other pollutants
into waterways.
The Agency recognizes the
importance of protecting water quality
and that aquatic resources serve a
variety of important functions for
protection of overall water quality.
Ultimately, the Agency’s interpretation
of section 401 is a legal interpretation
that has been established within the
overall framework and construct of the
CWA, informed by important policy
considerations and the Agency’s
expertise. The purpose of this
rulemaking is to provide a clear
articulation of what is authorized by
CWA section 401, including the
appropriate procedures and scope of
decision-making for water quality
certifications, that is supported by a
robust and comprehensive legal analysis
of the statute. The federal licenses and
permits that are subject to section 401
are also subject to additional federal
agency statutory reviews, including the
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National Environmental Policy Act, the
Endangered Species Act, and the
National Historic Preservation Act, all of
which are intended to provide a
comprehensive environmental
evaluation of potential impacts from a
proposed project. In addition, where
applicable, the CWA’s longstanding
regulatory permitting programs, like
those under sections 402 and 404, will
continue to address water quality issues
related to the discharge of pollutants
into waters of the United States, and the
CWA’s non-regulatory measures, like
protection of water quality from
nonpoint sources of pollution under
section 319, will continue to address
pollution of water generally to achieve
the objective of restoring and
maintaining the chemical, physical, and
biological integrity of the nation’s
waters. Section 401, on the other hand,
provides specific and defined authority
for States and Tribes to protect their
water quality in the context of a federal
licensing and permitting process,
including those processes in which
State or Tribal authority may otherwise
be entirely preempted by federal law.
The language of section 401 makes it
clear that this authority is limited and
does not broadly encompass all
potential environmental impacts from a
project.
Some commenters requested
examples of what considerations would
be outside the scope of certification,
based on the Agency’s limiting the
scope of certification to discharges,
rather than to the entire activity or
project. Commenters mentioned specific
considerations that they believed should
be excluded from the scope of
certification in the regulatory text, such
as effects caused by the presence of
pollutants in a discharge that are not
attributable to the discharge from a
federally licensed activity, effects
attributable to features of the permitted
activity besides the discharge, and
effects caused by the absence or
reduction of discharge. The Agency
generally agrees that such
considerations would be beyond the
scope of certification as articulated in
this final rule; however, the Agency is
not modifying the regulatory text to
reflect these specific considerations, as
there may be unique project-specific
facts or circumstances that must inform
whether a particular impact is caused by
the discharge, as defined in this final
rule.
b. Water Quality Requirements
Under the final rule, the term ‘‘water
quality requirements’’ means applicable
effluent limitations for new and existing
sources (CWA sections 301, 302, and
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306), water quality standards (section
303), toxic pretreatment effluent
standards (section 307), and State or
Tribal regulatory requirements for point
source discharges into waters of the
United States, including those more
stringent than federal standards. The
definition in the final rule has been
modified from the proposal to provide
additional clarity.
The term ‘‘water quality
requirements’’ is used throughout
section 401, and the term ‘‘other
appropriate requirements of State law’’
is used in section 401(d), but neither of
these terms is defined in the CWA.56
Because the EPA interprets ‘‘other
appropriate requirements of state law’’
to be a subset of ‘‘water quality
requirements,’’ the final rule uses the
term ‘‘water quality requirements’’ to
define the universe of provisions that
certifying authorities may consider
when evaluating a certification request
pursuant to CWA sections 401(a) and
401(d). The EPA’s interpretation of
these terms and the final definition are
intended to closely align the scope and
application of section 401 regulations
with the text of the statute.
An interpretation of section 401 that
most closely aligns with the text of the
statute would limit ‘‘water quality
requirements’’ to sections 301, 302, 303,
306 and 307 of the CWA and State and
Tribal laws and regulations that are
either counterparts to or that implement
these enumerated sections of the Act.
The EPA considered adopting this
interpretation in the final rule, but
recognizes that, in some cases, it may be
difficult to determine whether a State or
Tribal statute or regulation was adopted
‘‘to implement’’ sections 301, 302, 303,
306 and 307 of the CWA. In many cases,
State or Tribal statutes may have been
enacted prior to the 1972 CWA
amendments, but updated or modified
over the decades to implement or
56 In 1971, EPA Administrator Ruckelshaus
provided a written statement to the Chairman of the
House Committee on Public Works concerning H.R.
11896. H.R. Rep. No. 92–911, at 147–171 (1972).
The Administrator described 401(d) as it was
drafted at the time as requiring certifications to
‘‘assure compliance with Sections 301 and 302 and
‘any other applicable water quality requirement in
such State.’ ’’ Id. at 166. The Administrator noted
that ‘‘[t]he scope of the catchall phrase is not
defined in Section 401, and the question arises as
to whether certification by the State is to include
certification with respect to discharges from point
sources to meet the provisions of Sections 306 or
307.’’ Id. The Administrator stated that 401(d) could
be ‘‘more clearly expressed if the term ‘applicable
water quality requirement’ was defined. . . .’’ and
then offered an interpretation and a definition of
the term. Id. The Administrator’s recommendation
was not adopted in the enacted bill, and this
rulemaking is the first formal step the EPA has
taken to clarify the meaning of the terms in section
401(d).
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incorporate portions of the enumerated
CWA provisions.
To avoid placing a potentially
burdensome factual inquiry on States
and Tribes, the final rule definition of
‘‘water quality requirements’’ is drafted
more broadly to include those
enumerated provisions of the CWA and
State and Tribal regulatory requirements
that pertain specifically to point source
discharges into waters of the United
States. This is consistent with the plain
language of the statute because, with
one exception, each of the enumerated
CWA provisions in section 401
describes discharge-related limitations.
The only exception is section 303,
which addresses water quality
standards, but these are primarily used
to establish numeric limits in point
source discharge permits. Further, and
as described in section III.A of this
notice, section 401 applies only to
actual or potential discharges into
waters of the United States. The final
definition of ‘‘water quality
requirements’’ therefore closely aligns
with the text of the statute, while
providing an objective test for whether
a particular provision is within the
scope of section 401. The Agency
anticipates that this approach will
increase clarity and efficiency in the
certification process. Under this final
rule, a State or Tribal regulatory
requirement that applies to point source
discharges into waters of the United
States is a ‘‘water quality requirement’’
and is therefore within the scope of
certification.
The phrase ‘‘state or tribal regulatory
requirements for point source
discharges into waters of the United
States’’ in the final rule’s definition
includes those provisions of State or
Tribal law that are more stringent than
federal law, as authorized in CWA
section 510. 33 U.S.C. 1370. The
legislative history supports the EPA’s
interpretation in this final rule. See S.
Rep. No. 92–414, at 69 (1971) (‘‘In
addition, the provision makes clear that
any water quality requirements
established under State law, more
stringent than those requirements
established under this Act, also shall
through certification become conditions
on any Federal license or permit.’’). It is
important to note, however, that these
more stringent provisions may not alter
the scope of certification as provided in
this final rule. For example, nonpoint
source discharges and discharges to
other non-federal waters are not within
the scope of certification and are not
included in the definition of ‘‘water
quality requirements.’’ Accordingly,
they are not factors to be considered
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when making decisions on certification
requests.
Some commenters agreed that the
proposed definition limiting ‘‘any other
appropriate requirement of state law’’ to
‘‘EPA-approved state or tribal Clean
Water Act regulatory program
provisions’’ is the correct interpretation
of the Act because section 401 cannot
apply beyond the authority of the CWA.
These commenters agreed that the
principle ejusdem generis and the logic
of Justice Thomas’s dissent in PUD No.
1 show that the appropriate
interpretation of ‘‘any other appropriate
requirement of state law’’ extends ‘‘only
to provisions that, like other provisions
in the statutory list, impose dischargerelated restrictions,’’ which are the
‘‘regulatory provisions of the CWA.’’
Other commenters expressed confusion
regarding the meaning and scope of the
phrase ‘‘EPA-approved state or tribal
Clean Water Act regulatory program
provisions’’ in the proposed rule and
asked for clarification on which
regulatory programs would be included
in that term. Some commenters stated
that this lack of clarity made the scope
of the proposed rule ambiguous such
that States and Tribes would not be able
to implement the regulations.
The EPA has made some
enhancements to the final rule
definition of ‘‘water quality
requirements’’ to provide better clarity
and regulatory certainty. The final rule
does not require these State and Tribal
provisions to be EPA-approved. In
making this change, the Agency
considered that there may be State or
Tribal regulatory provisions that address
point source discharges into waters of
the United States that only partially
implement certain CWA programs or
that were not submitted to the EPA for
approval. The EPA also considered, as
noted by some commenters, that States
and Tribes may submit to the EPA CWA
regulatory program provisions,
including water quality standards and
applications for ‘‘treatment as States’’
(TAS), and wait months or sometimes
years for the EPA to act on those
submittals. The final rule language
addresses this concern by broadening
the universe of State and Tribal laws
that may be considered ‘‘water quality
requirements’’ compared to the
proposal.
A few commenters expressed concern
that the proposed rule failed to
recognize that most Tribes do not have
EPA-approved water quality regulations.
These commenters asserted that in areas
where the EPA is the certifying
authority, the Administrator would not
be able to consider water quality
protective ordinances or water quality
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standards adopted by Tribes, leaving no
protection for most Tribal waters. The
EPA appreciates these comments, and
under the final rule, State and Tribal
regulatory provisions for point source
discharges into waters of the United
States are ‘‘water quality requirements’’
regardless of whether they have been
approved by the EPA. Therefore, if a
Tribe has adopted water quality
standards under Tribal law that serve as
a basis for effluent limitations or other
requirements for point source
discharges into waters of the United
States, the certifying authority must
consider those provisions when
evaluating a certification request.
Some commenters asserted that the
proposed rule would limit the ability of
a Tribe to adopt water quality
regulations or to obtain TAS for section
401 certifications. Neither the proposal
nor the final rule affect in any way the
ability of a Tribe to adopt CWA water
quality standards or obtain TAS. The
EPA understands there may be unique
challenges with Tribal implementation
of CWA statutory authorities, but
reiterates that pursuant to section
401(b), the EPA is available and
obligated to provide technical expertise
on any matter related to section 401. In
addition, the EPA actively and routinely
provides financial and technical
assistance to Tribes for the development
of aquatic resource protection programs.
Such assistance includes Tribal capacity
building for new or enhanced regulatory
programs, as well as development of
laboratory, field, and quantitative
methods, tools, and trainings for
monitoring and assessing aquatic
resources. With this final rule, the
Agency is reaffirming its responsibilities
under section 401 to serve as a resource
and consultant to Tribes requesting
technical assistance.
Some commenters, citing the broad
interpretation of ‘‘any other appropriate
requirement of State law’’ in EPA’s
Interim Handbook, stated that the EPA
has not provided an adequate
explanation or rationale for departing
from its prior interpretation of the CWA.
The EPA disagrees with the suggestion
that it has not provided sufficient or
adequate explanation for the
interpretation presented in the proposed
rule. In any event, the final rule is based
in part on the plain language of section
401, which provides that the
enumerated sections of the CWA and
‘‘any other appropriate requirement of
State law’’ must be considered in a
water quality certification. The CWA
does not define what is an ‘‘appropriate
requirement of State law,’’ and the EPA
reasonably interprets this term to refer
to a subset of ‘‘water quality
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requirements,’’ a term that is also used
throughout section 401. The final rule,
like the proposal, is informed by the
principle ejusdem generis. Under this
principle, where general words follow
an enumeration of two or more things,
they apply only to things of the same
general kind or class specifically
mentioned. See Wash. State Dept. of
Social and Health Services v. Keffeler,
537 U.S. 371, 383–85 (2003). Given the
breadth of potential interpretations of
‘‘water quality requirements’’ and
‘‘other appropriate requirement of State
law’’ described throughout this notice,
the Agency concludes that the most
appropriate interpretation is one that
remains loyal to the text of the statute.
Accordingly, the final definition of
‘‘water quality requirements’’ includes
sections 301, 302, 303, 306, and 307 of
the CWA and State or Tribal statutes
and regulations governing point source
discharges into waters of the United
States.
A few commenters stated that the
EPA’s reliance on the canon of statutory
interpretation ejusdem generis is
unfounded because, if the context of a
statute dictates an alternative
interpretation, ejusdem generis should
not apply, citing N. & W. Ry. v. Train
Dispatchers, 499 U.S. 117 (1991). The
EPA disagrees with these commenters
who assert that the context of section
401(d) dictates a different result. The
use of the word ‘‘appropriate’’ in section
401(d) indicates that Congress intended
to limit the phrase ‘‘requirement of state
law’’ in some meaningful manner. It is
reasonable to conclude that Congress
intended that limitation to be informed
by the enumerated provisions of the
CWA that appear in section 401, as well
as other key statutory touchstones like
the terms ‘‘discharge’’ and ‘‘navigable
waters,’’ i.e., ‘‘waters of the United
States.’’ See Harrison v. PPG Industries,
Inc., 446 U.S. 578, 578–79 (1980)
(rejecting application of ejusdem generis
where—unlike the word ‘‘appropriate’’
in section 401(d)—the relevant statutory
phrase ‘‘any other final action’’ did not
contain limiting language that rendered
its meaning uncertain and in need of
further interpretation). The phrase ‘‘any
other appropriate requirement of State
law’’ in section 401(d) is not unlimited
or expansive, but rather it contains
limiting language (‘‘appropriate’’) that
must not be read out of the statute. In
short, the canon of statutory
interpretation of ejusdem generis is a
tool that the EPA reasonably and
properly used to inform the
interpretation of the ambiguous
statutory text in section 401.
Many commenters agreed with the
analysis in the proposed rule preamble
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that section 401 focuses on protecting
water quality and is not intended to
address other environmental impacts
such as air emissions, transportation
effects, climate change, and other
examples mentioned in the preamble to
the proposed rule. These commenters
stated that the proposed rule’s
definition of water quality requirements
appropriately ensures that the scope of
certification addresses water quality
concerns within the scope of the CWA.
A few commenters stated that the
legislative history for the CWA generally
supports water quality as the
appropriate boundary for the scope of
water quality certifications, citing 116
Cong. Reg. 8,984 (Mar. 24, 1970), and S.
Rep. No. 92–414 (1971). The EPA agrees
with these commenters and concludes
that the final rule appropriately limits
water quality certifications issued under
section 401 to water quality issues.
Some commenters maintained that
the proposed rule’s definition of water
quality requirements would allow a
certifying authority only to consider
numeric water quality criteria. Some
commenters requested that the
definition of water quality requirements
be revised to explicitly include aquatic
use criteria and impacts such as
streamflow and water quantity. Some
commenters expressed concern that the
scope of water quality requirements
under the proposed rule would no
longer allow States and Tribes to
consider water quality standards that go
beyond the scope of, or are more
stringent than, the CWA. Neither the
proposed definition of ‘‘water quality
requirements’’ nor the final rule would
limit States to evaluating only numeric
water quality criteria in a certification
review. While numeric water quality
criteria are a central element of a water
quality certification, the final definition
allows States and Tribes to evaluate
narrative water quality standards and
other regulatory requirements that apply
to point source discharges into waters of
the United States.
Some commenters requested that the
final rule clarify that requiring
minimum in-stream flows is beyond the
scope of water quality requirements and
that fish and wildlife impacts are not
within the proper scope of section 401,
because those impacts are more
appropriately addressed under other
federal statutes and regulations. The
EPA agrees that, in some cases, these
elements may be beyond the scope of
section 401. However, neither the
proposed rule nor the final rule specify
whether minimum flow conditions
would be appropriate certification
conditions. Given the case-specific
nature of such an analysis, the final rule
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does not include categorical exclusions
requested by these commenters.
Some commenters stated that the
proposed rule would violate the broad
savings clause in section 510, which
applies to any pollution control or
abatement requirement. These
commenters asserted that nothing in
section 510 excludes conditions
imposed under section 401. These
commenters further asserted that
numerous courts have held that sections
401 and 510 evince Congress’ clear
intent not to preempt but to
‘‘supplement and amplify’’ State
authority. The EPA interprets section
401 as providing an opportunity for
States and Tribes to evaluate and
address water quality concerns during
the federal license or permit processes,
which, in some cases, might otherwise
preempt State authority. There is
nothing in the text of section 401(d) that
supports the idea that States have
unbounded authority—as a result of
section 510 or otherwise—to impose an
unlimited universe of conditions on an
applicant for a federal license or permit.
Any such conditions must be—as the
statute specifies—based on certain
enumerated provisions of the CWA and
on any other ‘‘appropriate’’
requirements of State law. As the
Agency charged with administering the
CWA, EPA is authorized to interpret
‘‘appropriate’’ in a way that balances the
scope and focus of section 401 and State
prerogative under section 510. If
Congress intended for section 401 to
reserve all State authorities over
pollution control and abatement, as it
did under section 510, Congress could
have specifically referenced section 510
within section 401. Congress did not do
so, and instead cited to other specific
provisions of the CWA and referenced
other ‘‘appropriate’’ requirements of
State law.
In fact, the 1972 Senate Bill version of
section 401(d) explicitly referenced
section 510 and provided that a
certification could include conditions
necessary to assure that the applicant
would comply with ‘‘any more stringent
water quality requirements under State
law as provided in section 510 of this
Act . . .’’ S. 2770, 92nd Cong. (1972).
This language was not included in the
enacted bill, but the Senate Bill version
demonstrates that Congress considered
including a reference to section 510
within section 401, but did not do so.
This is further evidence that Congress
did not intend section 401 to operate as
a broad savings clause for any pollution
control or abatement requirement, as
some commenters assert.
These commenters also fail to account
for the use of the word ‘‘appropriate’’ in
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section 401(d) as a meaningful
limitation on what may be considered as
part of the scope of certification under
section 401. For the reasons stated
above, the Agency concludes that State
and Tribal regulatory requirements for
point source discharges into waters of
the United States properly allow States
to participate in the section 401
certification process, consistent with the
CWA.
As discussed throughout this section
and as illustrated by public comments,
the terms ‘‘water quality requirements’’
and ‘‘any other appropriate requirement
of state law’’ lend themselves to a range
of potential interpretations. Informed by
the public comments received, the EPA
considered a number of different
interpretations prior to finalizing the
definition of the term ‘‘water quality
requirements.’’ At one end of the
spectrum, the Agency considered
whether the text of section 401(d) could
mean that the only State or Tribal lawbased limitations allowed in a
certification would be ‘‘monitoring’’
requirements ‘‘necessary to assure’’ that
the applicant for a federal license or
permit will ‘‘comply with’’ ‘‘any other
appropriate requirement of State law.’’
While this may be a permissible
interpretation of section 401(d), and it
may appear consistent with the
directive in CWA section 304(h) that the
EPA establish test procedures for the
analysis of pollutants and factors that
must be included in a certification, the
EPA is not adopting this interpretation
in the final rule. Such an interpretation
would significantly limit the universe of
conditions related to ‘‘appropriate
requirements of State law’’ to only
monitoring conditions and would be
narrower than the interpretation set
forth in both the proposed and final
rule. This interpretation also would not
provide any additional clarity as to the
scope of State or Tribal law that could
be the basis for those monitoring
conditions.
At the other end of the spectrum, the
EPA considered whether section 401(d)
certification conditions could be based
on any State or Tribal law, regardless of
whether it is related to water quality.
This interpretation reflects the current
practice of some certifying authorities.
The Agency rejected this broad and
open-ended interpretation of section
401(d) as inconsistent with the structure
and purposes of section 401 as reflected
in the text of the provision, including
Congress’s inclusion of the limiting
modifier ‘‘appropriate’’ in the phrase
‘‘any other appropriate requirement of
State law.’’ By including the term
‘‘appropriate,’’ Congress placed at least
some limits on the phrase ‘‘any other
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. . . requirement of State law.’’ The EPA
concludes that such an open-ended
interpretation would be far more broad
than the proposed rule and the final
rule, would exceed the scope of
authority provided under the CWA, and
would further reduce regulatory
certainty.
The EPA also considered another
broader interpretation that would
authorize certification conditions based
on any State or Tribal water qualityrelated provision. Such an
interpretation could bring in conditions
that purport to address non-federal
waters or that regulate nonpoint source
discharges. Some commenters stated
that section 401 provided a broad grant
of authority to States and Tribes to
protect water quality without
limitations. These commenters asserted
that to interpret the statute otherwise
would read ‘‘any other appropriate
requirement of state law’’ out of the
statute. These commenters also cited
other cases that suggest that a broad
scope of State laws may be considered
for a water quality certification. The
EPA did not adopt this broad
interpretation in the final rule because
the EPA concluded that it is not
required by the statute and is not the
better reading of section 401(d).
Although the interpretation has some
superficial appeal, it errs by equating
‘‘appropriate’’ with ‘‘any’’ and thereby
fails to provide meaning to the word
‘‘appropriate.’’ Under the familiar
interpretative canon, no portion of a
statute may be construed as mere
surplusage. Such an interpretation
would also be inconsistent with the
regulatory framework of the CWA,
which addresses point source
discharges from waters of the United
States.
Finally, the EPA considered an
interpretation that would limit water
quality requirements to those provisions
of State or Tribal law that restore or
maintain the physical, chemical, and
biological integrity of the nation’s
waters, consistent with CWA section
101(a). These same principles could also
be applied to only waters of the United
States, or narrowed to only include
water quality requirements that restore
or maintain the chemical integrity of
waters. Although this may be a
permissible interpretation of the statute,
the EPA concluded that it may not
provide sufficient specificity or
regulatory certainty.
The EPA considered all of these
public comments and the varying
interpretations described above and is
finalizing a definition of ‘‘water quality
requirements’’ that strikes a balance
among various competing
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considerations while remaining loyal to
the text of the CWA. The final rule is a
reasonable interpretation of the
ambiguous statutory text, is within the
clear scope of the CWA, and will
provide additional clarity and
regulatory certainty for certifying
authorities, project proponents, and
federal licensing and permitting
agencies.
c. Scope of Certification Conditions and
Denials
The scope of certification described
above is the foundation of the final rule
and it informs all other provisions of the
final rule, including all actions taken by
a certifying authority. Under this final
rule, certification conditions and
denials must be within the scope of
certification as provided in section
121.3 of the final rule. In other words,
a condition must be necessary to assure
that the discharge from a proposed
federally licensed or permitted project
will comply with water quality
requirements, as defined at section
121.1(n) of this final rule, and a denial
must be due to the inability of a
certifying authority to determine that
the discharge from the proposed project
will comply with water quality
requirements.
To promote transparency and to help
assure that certifying authorities
understand and consider the
appropriate scope of information when
developing a certification condition or
issuing a denial, the final rule also
requires a certifying authority to include
specific information to support each
condition or denial. These requirements
help to build a comprehensive
administrative record and to document
the certifying authorities’ basis for the
condition or denial. As discussed in
greater detail in section III.G.2.b of this
notice, this final rule requires that the
following information be included in a
certification to support each condition:
1. A statement explaining why the
condition is necessary to assure that the
discharge from the proposed project will
comply with water quality
requirements; and
2. A citation to federal, state, or tribal
law that authorizes the condition.
Similarly, as discussed in greater
detail in section III.G.2.c of this notice,
the final rule requires that the following
information be included in a denial of
certification:
1. The specific water quality requirements
with which the discharge will not comply;
2. A statement explaining why the
discharge will not comply with the identified
water quality requirements; and
3. If the denial is due to insufficient
information, the denial must describe the
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specific water quality data or information, if
any, that would be needed to assure that the
discharge from the proposed project will
comply with water quality requirements.
These requirements are intended to
increase transparency and ensure that
any limitation or requirement added to
a certification, and any denial, is within
the scope of certification.
As discussed in section II.G.1.a of this
notice, the EPA is aware that some
certifying authorities may have
previously interpreted the scope of
section 401 to include non-water
quality-related considerations. For
example, the EPA understands some
certifying authorities have included
conditions in a certification that have
nothing to do with effluent limitations,
monitoring requirements, water quality,
or even the CWA. Such requirements
were perhaps based on other non-water
quality-related federal statutory or
regulatory programs (NEPA, ESA), or on
concerns about environmental media
other than water. Or such requirements
might have been related to State, Tribal,
or local laws, policies, or guidance that
are unrelated to the regulation of point
source discharges to waters of the
United States. Similarly, the EPA is
aware of circumstances in which some
States have denied certifications on
grounds that are unrelated to water
quality requirements and that are
beyond the scope of CWA section 401.57
The EPA does not believe that such
actions are authorized by section 401,
because they go beyond assuring that
‘‘discharges’’ from federally licensed or
permitted activities comply with ‘‘water
quality requirements.’’ See also section
II.G.1 of this notice for further
discussion of the terms ‘‘discharge’’ and
‘‘water quality requirements.’’
Some commenters provided comment
regarding the appropriate scope of
denials. These commenters asserted that
the proposed scope of review would
limit a certifying authority’s ability to
deny certification. A few commenters
asserted that states should be able to
deny certification if any state
requirements would not be met. Other
commenters argued that the scope of
denial should be limited to just those
CWA provisions enumerated in section
401(a). As discussed in section III.D of
this notice, the final rule provides a
57 See Letter from Thomas Berkman, Deputy
Commissioner and General Counsel, New York
State Department of Environmental Conservation, to
Georgia Carter, Vice President and General Counsel,
Millennium Pipeline Company, and John Zimmer,
Pipeline/LNG Market Director, TRC Environmental
Corp. (Aug. 30, 2017) (denying section 401
certification because ‘‘FERC failed to consider or
quantify the effects of downstream [greenhouse gas
emissions] in its environmental review of the
Project’’).
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certifying authority the ability to deny
certification if it is unable to certify that
the proposed discharge will comply
with ‘‘water quality requirements’’ as
defined in this rule. The Agency
disagrees with commenters who
asserted that a certifying authority
should be able to deny certification if
any State or Tribal requirements would
not be met. As discussed above in
section III.E.2.b of this notice, extending
the scope of review to any State or
Tribal law would be inconsistent with
Congress’s inclusion of the limiting
modifier ‘‘appropriate’’ in the phrase
‘‘any other appropriate requirement of
State law,’’ and the Agency is not
finalizing the proposed alternative
interpretation that would limit the
scope of denials to the CWA provisions
enumerated in section 401(a). The
Agency’s interpretation of the scope of
certification, including the scope of
denials, strikes a balance among
competing considerations while
remaining loyal to the text of the CWA.
Many commenters specifically
addressed the appropriate scope of
conditions. Some commenters urged the
EPA not to use a small number of
examples of conditions that did not
directly relate to protecting water
quality to justify narrowing the scope of
certification conditions. These
commenters provided additional
examples of conditions that certifying
authorities have included in
certifications, such as building and
maintaining fish passages,
compensatory mitigation, temporal
restrictions on activities to mitigate
hazards or protect sensitive species, preconstruction monitoring and assessment
of resources, habitat restoration, tree
planting along waterways, spill
management plans, stormwater
management plans, and facilitating
public access. The EPA appreciates
commenters’ providing additional
examples of certification conditions.
The EPA agrees that in many instances,
each of these examples may be beyond
the scope of certification as articulated
in this final rule. However, there may be
unique project-specific facts or
circumstances, including the nature of
the discharge and applicable water
quality standards and related designated
uses, that must inform whether a
particular condition is within the scope
of certification, as defined in this final
rule.
A few commenters stated that
narrowing States’ and Tribes’ ability to
condition licenses and permits may lead
to more certification denials. The EPA
disagrees with these commenters, as the
scope of certification in the final rule
informs the scope of appropriate
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conditions and the appropriate bases for
denial. In other words, if this final rule
would preclude a State from requiring
tree planting as a certification condition,
the final rule would also preclude a
State from denying certification based
on a lack of trees planted in or around
the project area.
Some commenters stated that limiting
the proposed definition of ‘‘water
quality requirements’’ to exclude State
laws that are not EPA-approved would
preclude conditions based on Staterequired riparian buffers, erosion and
sedimentation controls, chloride
monitoring, mitigation, fish and wildlife
protection, drinking water protections,
fish ladders, and adaptive management
measures. As discussed above, the
Agency is finalizing a definition of
‘‘water quality requirements’’ that
removes the condition that State or
Tribal law requirements must be ‘‘EPAapproved.’’ Under the final rule, the
definition of ‘‘water quality
requirements’’ includes ‘‘state or tribal
regulatory requirements for point source
discharges into a water of the United
States,’’ and includes State or Tribal
provisions that are more stringent than
federal requirements.
One commenter suggested that
instead of limiting section 401
certification conditions to water qualityrelated conditions, the EPA should
consider having each State define the
reserved authorities under section 401
that it intends to apply in a certification,
as well as the types of discharges
associated with those State authorities.
The EPA disagrees with this
commenter’s suggestion, as it would
result in a greater patchwork of State
regulations, with potentially every State
establishing a different scope of
certification and a different range of
discharges that may be subject to
certification in each State. One principal
goal of this rulemaking is to provide
greater clarity, regulatory certainty, and
predictability for the water quality
certification process. Finalizing a rule
like the one suggested by this
commenter would undercut those
outcomes significantly.
The EPA recognizes that, historically,
many State and Tribal certification
actions have reflected an appropriately
limited interpretation of the purpose
and scope of section 401. However, as
discussed above, the Agency is also
aware that some certifications have
included conditions that may be
unrelated to water quality, including
many of the types noted above, such as
requirements for biking and hiking trails
to be constructed, one-time and
recurring payments to State agencies for
improvements or enhancements that are
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unrelated to the proposed federally
licensed or permitted project, and
public access for fishing and other
activities along waters of the United
States. Using the certification process to
yield facility improvements or payments
from project proponents that are
unrelated to water quality impacts from
the proposed federally licensed or
permitted project is inconsistent with
the authority provided by Congress.
Some commenters stated that the EPA
should clarify in the final rule that
certification conditions must be directly
related to impacts to water quality
requirements from the project
proponent’s activity, and not water
quality concerns caused by other
entities. One commenter stated that the
guiding principle for courts tasked with
determining the propriety of section 401
certification conditions has been
whether the condition was designed to
directly address water quality effects
caused by the licensee’s or permittee’s
activity, and courts have emphasized
that state agencies evaluating requests
for water quality certifications may not
consider the effects of activities other
than those being licensed. This
commenter recommended that the EPA
revise section 121.5(d) of the proposed
rule to state, ‘‘Any condition must
directly address a water quality effect
caused by the particular activity for
which the applicant is seeking a license
or permit.’’ The EPA agrees with these
commenters that certification conditions
must be directly related to water quality
impacts from the proposed project.
However, the EPA has concluded that
the requirements in section 121.7(d) of
the final rule accomplish the
commenter’s request, and the EPA did
not modify the final rule to include
what EPA believes would be a
redundant provision. The EPA is also
aware of certification conditions that
purport to require project proponents to
address pollutants that are not
discharged from the construction or
operation of a federally licensed or
permitted project. As discussed in this
section, certification conditions must be
necessary to assure that the discharge
from a proposed federally licensed or
permitted project will comply with
water quality requirements, because this
is the extent of authority provided in
section 401.
The Agency proposed a definition for
‘‘condition’’ in an attempt to clarify that
conditions included in a water quality
certification must be within the scope of
certification, as defined in this final
rule. Some commenters supported the
proposed definition of condition and
the structure of the proposed rule. Other
commenters stated that the EPA
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unnecessarily defined ‘‘condition’’ to
allow for federal review of water quality
certifications. One commenter stated
that the argument that Congress
intended to allow the EPA to define the
term ‘‘condition’’ under section 401
misconstrues the structure of section
401(d). This commenter stated that
under the plain language of section
401(d), States impose ‘‘limitations’’ and
‘‘monitoring requirements’’ in a
certification, and the certification itself
then becomes ‘‘a condition’’ on the
federal permit. This commenter further
stated that there is no ambiguity in the
statute, which requires that the entire
certification is incorporated into the
federal license or permit.
The Agency disagrees that it
misinterpreted section 401(d) of the
statute and further disagrees with the
suggestion that there is no ambiguity in
section 401(d).58 The EPA
acknowledges that interpretations other
than what were presented in the
proposed rule could be permissible
under the statute, if adequately
supported by a reasoned explanation.
The EPA considered the specific
interpretation advanced by this
commenter and is not adopting this
interpretation in the final rule. As a
practical matter, courts that have
considered challenges to certification
conditions have routinely focused their
review on those specific conditions,
rather than the entire certification itself.
See PUD No. 1, 511 U.S. at 713–14;
Deschutes River All. v. Portland Gen.
Elec. Co., 331 F. Supp. 3d 1187, 1192,
1199–1209 (D. Or. 2018); Airport
Communities Coal. v. Graves, 280 F.
Supp. 2d 1207, 1214–17 (W.D. Wash.
2003). The EPA’s final rule is consistent
with these courts’ interpretations. For
these reasons and to promote clarity and
regulatory certainty, the EPA is
declining to adopt this particular
interpretation. However, based on other
enhancements in the final rule, the
Agency has decided not to finalize a
definition for ‘‘condition.’’ Together, the
‘‘scope of certification’’ and ‘‘water
quality requirements,’’ as well as the
rule’s language specifying the elements
required in a certification with
conditions, appropriately limit what can
be properly considered a condition
under the final rule, such that defining
the term is not necessary. Moreover,
58 The legislative history of the 1972 amendments
does not provide a clear answer on this issue. See
H.R. Rep. No. 91–911, at 124 (1972) (‘‘the effluent
limitations and other limitations and any
monitoring requirements will become a condition
on any Federal license or permit.’’ But see S. Rep.
No. 92–414, at 69 (1971) (‘‘such a certification
becomes an enforceable condition on the Federal
license or permit.’’)
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section 121.7(a) of the final rule
specifically provides that any action to
grant a certification with conditions
must be within the scope of
certification. The scope of certification
extends to the scope of conditions that
are appropriate for inclusion in a
certification—specifically, that these
conditions must be necessary to assure
that the discharge from a federally
licensed or permitted activity will
comply with water quality
requirements, as defined at section
121.1(n) of this final rule.
F. Timeframe for Certification Analysis
and Decision
1. What is the Agency finalizing?
In this final rule, the EPA is
reaffirming that CWA section 401
requires certifying authorities to act on
a request for certification within a
reasonable period of time, which shall
not exceed one year. By establishing an
absolute outer bound of one year
following receipt of a certification
request, Congress signaled that
certifying authorities have the expertise
and ability to evaluate potential water
quality impacts from even the most
complex proposals within a reasonable
period of time after receipt of a request,
and in all cases within one year. Under
the final rule, federal agencies
determine the reasonable period of time
for a certifying authority to act on a
certification request, and the final rule
establishes procedures for setting,
communicating, and (where
appropriate) extending the reasonable
period of time. The EPA is also
reaffirming that section 401 does not
include a tolling provision, and the
period of time to act on a certification
request does not pause or stop once the
certification request has been received.
The final rule provides additional
clarity on what is a ‘‘reasonable period’’
and how the period of time is
established.
2. Summary of Final Rule Rationale and
Public Comment
a. Reasonable Period of Time
The EPA is finalizing the proposed
rule’s provision that federal licensing
and permitting agencies determine the
reasonable period of time, either
categorically or on a case-by-case basis.
Some federal licensing and permitting
agencies have appropriately exercised
their authority to set the reasonable
period of time through promulgated
regulations, including EPA, FERC and
the Corps. EPA’s regulations at 40 CFR
124.53(c)(3) provide that ‘‘the State will
be deemed to have waived its right to
certify unless that right is exercised
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within a specified reasonable time not
to exceed 60 days from the date the draft
permit is mailed to the certifying State
agency. . . .’’ FERC’s regulations at 18
CFR 5.23(b)(2) provide that ‘‘[a]
certifying agency is deemed to have
waived the certification requirements of
section 401(a)(1) of the Clean Water Act
if the certifying agency has not denied
or granted certification by one year after
the date the certifying agency received
a written request for certification.’’ The
Corps’ regulations at 33 CFR
325.2(b)(1)(ii) state that ‘‘[a] waiver may
be explicit, or will be deemed to occur
if the certifying agency fails or refuses
to act on a request for certification
within sixty days after receipt of such a
request unless the district engineer
determines a shorter or longer period is
reasonable for the state to act.’’ The
Executive Order directed all federal
agencies with licenses or permits that
may trigger section 401 certification to
update their existing regulations to
promote consistency across the federal
government upon completion of this
rulemaking to modernize the EPA’s
certification regulations.
Public commenters provided a variety
of perspectives about which entity
should set the reasonable period of time.
Some commenters agreed with the
proposed rule that federal agencies are
the appropriate entity to determine the
reasonable period of time, subject to the
statutory one-year limit. One commenter
said the federal agencies should set the
time period to maximize efficiency,
increase timeliness of decision-making,
and reduce uncertainty. Some
commenters asserted that the reasonable
period of time should be set by the
certifying authority, because they
believe that federal agencies lack
expertise on State environmental and
administrative requirements and
therefore may set a reasonable period of
time that is incompatible with those
requirements or too short for complex
projects. Other commenters asserted
that federal agencies do not have
authority under section 401 to
determine the reasonable period of time.
One commenter asserted that while
federal agencies have the authority to
adopt regulations setting a ‘‘reasonable
time’’ for decisions, citing Millennium
Pipeline Co. v. Seggos, 860 F. 3d 696,
700 (D.C. Cir. 2017), the CWA did not
give federal agencies unfettered
discretion to set deadlines that prevent
States and Tribes from exercising their
substantive authority under section 401,
citing City of Tacoma v. FERC, 460 F.3d
53, 67 (D.C. Cir. 2006). One commenter
noted that it is a conflict of interest for
the federal agency to determine the
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‘‘reasonable period of time’’ where that
federal agency is both the project
proponent and the agency issuing the
license or permit. Other commenters
believed that the EPA should determine
the reasonable period of time in
coordination with the certifying
authority. Finally, some commenters
stated that a one-year reasonable period
of time should be provided without any
additional federal agency discretion,
which they asserted would increase
regulatory certainty and ensure
sufficient time to meet Tribal
consultation obligations.
The EPA has considered these
comments and concluded that it is
reasonable and appropriate for federal
agencies to set the reasonable period of
time. The Agency disagrees that
certifying authorities should set the
reasonable period of time and disagrees
that the EPA should set the reasonable
period of time for all certification
requests. The Agency also disagrees that
certifying authorities should always
have an entire year to act on a
certification request, as a year may not
be ‘‘reasonable’’ in all cases, and section
401 does not guarantee one year but
rather states the action shall be taken
within a reasonable period of time
which ‘‘shall not exceed one year.’’ 33
U.S.C. 1341(a)(1). The statutory
language of section 401 provides that a
certification shall be waived if the
certifying authority fails or refuses to act
within the reasonable period of time,
but the statute is silent on who should
set the reasonable period of time. Id.
The Agency is authorized to reasonably
interpret the statute (see Chevron, 467
U.S. at 843–44) and concludes that
federal licensing and permitting
agencies should continue to fill this role
as they have done for the past several
decades. This interpretation is
consistent with judicial and
administrative precedent 59 and with
federal regulations that were
promulgated decades ago through
public notice and comment rulemaking
(see, e.g., 33 CFR 325.1(b)(ii) and 18
59 Hoopa Valley Tribe v. FERC, 913 F.3d 1099,
1104 (D.C. Cir. 2019) (‘‘Thus, while a full year is
the absolute maximum, it does not preclude a
finding of waiver prior to the passage of a full year.
Indeed, the [EPA]—the agency charged with
administering the CWA—generally finds a state’s
waiver after only six months. See 40 CFR 121.16.’’);
Constitution Pipeline Company, LLC, 164 FERC P
61029 (F.E.R.C.), 2018 WL 3498274 (2018) (‘‘[T]o
the extent that Congress left it to federal licensing
and permitting agencies, here the Commission, to
determine the reasonable period of time for action
by a state certifying agency, bounded on the outside
at one year, we have concluded that a period up to
one year is reasonable.’’). See the Economic
Analysis for further discussion on the litigation
posture of the Constitution Pipeline Company, LLC
case.
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CFR 5.23(b)(1)). From a practical
standpoint, federal licensing and
permitting agencies have decades of
experience in processing applications in
accordance with their license and
permit programs, and it is reasonable for
the EPA to conclude that federal
agencies would have the necessary
knowledge and expertise to establish a
reasonable period of time that is
appropriate considering the applicable
federal procedures.
The Agency disagrees with the
commenter’s suggestion that there is a
conflict of interest when the federal
agency setting the reasonable period of
time is also the project proponent. This
final rule requires federal agencies to
comply with the same requirements,
including requirements concerning the
reasonable period of time, as other
project proponents when they require a
federal permit that triggers the
certification process.
In setting the reasonable period of
time for a certification—either on a
project-by-project basis or
categorically—this final rule requires
federal agencies to consider:
1. The complexity of the proposed
project;
2. The nature of any potential
discharge; and
3. The potential need for additional
study or evaluation of water quality
effects from the discharge.
With one exception discussed further
below, the EPA is finalizing these
factors as proposed. These factors
maintain flexibility for federal agencies
to consider project-specific or
categorical information that should be
readily available. If certifying
authorities believe more time is
necessary than what is established by
the federal agency, they may request an
extension to the reasonable period of
time as described below.
A federal agency may decide that it is
more efficient to establish the
reasonable period of time based on
common attributes of a category of
licenses, permits, or potential
discharges—rather than on a case-bycase basis. This type of categorical
approach may be set out through
rulemaking or other procedures in
accordance with law. Establishing
categorical reasonable periods of time
may be more efficient, conserve
resources, and increase regulatory
transparency.
Some commenters supported the
proposed three factors for determining
the reasonable period of time. Other
commenters recommended that a
variety of additional factors be added,
including but not limited to State law
requirements for public participation
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and procedure; State agency workload
and resource constraints; substantive
State law requirements for
environmental review, type of permit, or
timing of season-dependent field
studies; time to review a certification
request and any subsequent
supplemental information; time for all
stakeholders to provide input on a
certification request; time for project
proponents to provide additional
information; other federal program
requirements; and the extent of
potential impact from a discharge.
Several commenters noted that under
the process set forth in the proposed
rule, the federal agency could be
required to set the reasonable period of
time based on the three factors, but
without receiving the actual
certification request.
After considering these public
comments, the EPA is finalizing three
factors that federal agencies must
consider when setting the reasonable
period of time. In response to
comments, the second factor has been
modified to require the federal agency to
consider the nature of any potential
discharge. This modification clarifies
that, in establishing the reasonable
period of time, federal agencies should
consider not only the potential for a
discharge, but also the nature of any
potential discharge, including (as
appropriate) the potential volume,
extent, or type of discharge associated
with a particular project or particular
category of license or permit. Consistent
with the proposal, these factors may be
used to establish a reasonable period of
time on a project-by-project basis or
categorically.
Many of the factors that commenters
recommended would be subsumed by
one of the factors that the EPA is
finalizing, such as project complexity.
Many of the concerns that commenters
raised about the proposal—for example,
that the reasonable period of time does
not account for State public notice
procedures—would also be a concern
under the status quo 1971 certification
regulations. However, over the past few
decades, certifying authorities and
federal agencies have formulated joint
applications, memoranda of agreement,
and other mechanisms to ensure that
public participation requirements are
met within the reasonable period of
time. The EPA expects certifying
authorities and federal agencies to
continue these cooperative approaches
to facilitate implementation of the final
rule.
The EPA received a variety of
comments regarding a potential default
reasonable period of time of six months,
including conflicting views on whether
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six months is too long or too short, and
whether a default reasonable period of
time would increase or decrease clarity
and regulatory certainty. Some
commenters asserted that a default
reasonable period of time of six months
would be too short in cases in which
certifying authorities have not received
all necessary information from project
proponents, or for project proponents
requiring FERC licenses. Another
commenter stated that without a default
period of time, the rule would introduce
regulatory uncertainty and result in
inefficiencies and delays. The Agency
has considered these comments and is
finalizing the rule as proposed with no
default or minimum reasonable period
of time. The final rule thus provides
federal licensing and permitting
agencies the maximum flexibility to
develop appropriate procedures for their
permitting programs as they update
their certification regulations in
accordance with the Executive Order.
The final rule also clarifies the
process by which federal agencies and
certifying authorities communicate
regarding the reasonable period of time.
A clear understanding of the reasonable
period of time will prevent certifying
authorities from inadvertently waiving
their opportunity to certify a request
and will provide regulatory certainty to
the project proponent. As explained in
section III.C of this notice, the Agency
has modified the proposed rule to
respond to commenter concerns and is
finalizing a requirement that the project
proponent provide the certification
request to the federal agency
concurrently when it submits the
certification request to the certifying
authority. Under the final rule and
consistent with the proposal, within 15
days of receiving the certification
request from the project proponent, the
federal agency must provide, in writing,
the following information to the
certifying authority: The date of receipt,
the applicable reasonable period of time
to act on the certification request, and
the date upon which waiver will occur
if the certifying authority fails or refuses
to act. This provision is substantively
identical to the one proposed, with
minor modifications to increase clarity.
Public commenters expressed
implementation concerns regarding the
process for federal agencies to
communicate the reasonable period of
time to the certifying authority. One
commenter believed that the 15-day
turnaround time may not be practical,
and a few commenters suggested that
there is no accountability for federal
agencies that fail to provide the required
information within 15 days. A few
commenters recommended adding a
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procedure for adjudicating
circumstances where the certifying
authority disagrees with the reasonable
period of time set by the federal agency.
One commenter noted there is no
requirement that the federal agency
explain the chosen time period, making
it more difficult to challenge the federal
agency’s decision or to petition for more
time. One commenter said that federal
agencies should be required to
communicate the reasonable period of
time even when agencies have
promulgated time periods categorically
by project type in their section 401
implementing regulations.
The EPA has considered these
comments and is finalizing as proposed
the process for federal agencies to
communicate the reasonable period of
time. The EPA understands that this
process may create additional
administrative burdens on federal
agencies, given the number of section
401 certification requests that are
submitted each year. However, the
Agency expects that the benefit of
clarity and transparency that this
additional process will provide for all
parties involved in a section 401
certification process will outweigh any
additional burden on federal agencies.
The EPA also expects the federal
agencies will quickly routinize this
process by developing and using forms,
electronic notifications, or other tools to
minimize the potential administrative
burden associated with providing
written notice of the reasonable period
of time. The EPA does not anticipate
that federal agencies will fail to set, or
fail to notify certifying authorities of,
the reasonable period of time under this
final rule. The EPA expects federal
agencies to communicate and act in
good faith and in accordance with this
final rule regarding the establishment of
a reasonable period of time. Consistent
with the proposal, the final rule
authorizes federal agencies to establish
categorical reasonable periods of time
for types of licenses or permits, thereby
increasing efficiency and transparency.
To provide additional certainty to
certifying authorities and project
proponents, the EPA recommends that
federal agencies promulgate in their
updated certification regulations a
minimum reasonable period of time that
may be extended on a case-by-case
basis, so long as it does not exceed one
year from receipt of the certification
request. To the extent that federal
agencies are considering establishing
additional procedures for
communicating the reasonable period of
time to certifying authorities (e.g.,
directing all project proponents to a
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public website to view categoricallyestablished reasonable periods of time
in federal agency regulations), the EPA
supports the development of such
procedures so long as they comply with
the requirements in this rule. The EPA
disagrees with the suggestion that a
separate appeal process is necessary for
certifying authorities to adjudicate the
federal agency’s reasonable period of
time, as this final rule provides a
process for the certifying authority to
request an extension to the established
reasonable period of time and describes
clear factors for federal agencies to
consider when setting the reasonable
period of time in the first instance.
The EPA is clarifying that section 401
does not prohibit a federal agency from
extending an established reasonable
period of time, provided that the
extended time period is reasonable and
does not exceed one year from receipt.
Some commenters stated that it would
increase regulatory uncertainty for
project proponents if the reasonable
period of time could be modified.
However, most commenters on this
issue agreed that the rule should allow
the flexibility to modify timeframes, and
many of these commenters agreed that
the rule should mirror the statute and
maintain the maximum timeframe of
one year. A few commenters suggested
that the Agency clarify the process for
modifying the time period, for instance
by requiring specific information to be
included in an extension request, or by
providing federal agencies with a
deadline to respond to extension
requests. Another commenter said the
rule should provide a dispute resolution
process in the event the federal agency
denies the State’s request for an
extension. A few commenters stated that
federal agencies should be prohibited
from shortening the reasonable period of
time, and other commenters asserted
that federal agencies, in the spirit of
cooperative federalism, should consult
with certifying authorities about when
shorter timelines may be appropriate.
The EPA does not expect reasonable
periods of time to be extended
frequently, but the final rule is intended
to provide federal agencies with
additional flexibility to account for
unique circumstances that may
reasonably require a longer period of
time than was originally established.
For such cases, the EPA is finalizing as
proposed the process by which the
extended time period should be
communicated in writing to the
certifying authority and the project
proponent to ensure that all parties are
aware of the change. This provision is
substantively identical to the proposed
provision, with minor modifications to
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increase clarity. The EPA finds it
unnecessary to include additional
timelines and procedures in the
regulatory text because, as many
commenters on the proposed rule
pointed out, many certifying authorities
and federal agencies already have
established procedures in place through
cooperative agreements or memoranda
of agreement. The Agency intends to
maintain flexibility in the final rule for
federal agencies and certifying
authorities to coordinate in this manner
and to routinize these processes to
increase efficiencies. Under the final
rule, the reasonable period of time could
be extended, as there may be projectspecific cases when this is appropriate,
so long as the period of time remains
‘‘reasonable.’’ Consistent with the
proposal, the final rule does not
authorize a reasonable period of time to
be shortened once it is established. The
Agency has made edits in final rule
section 121.6 to clarify that the
reasonable period of time can be
extended, but not shortened, once it is
established. This change provides
flexibility in circumstances where
unique or complex issues may arise, but
maintains certainty for the certifying
authority that the reasonable period of
time, once established, cannot be made
shorter.
The EPA is reaffirming in this final
rule that the federal agency also
determines whether waiver has
occurred. Some commenters asserted
that federal agencies do not have
authority to determine that waiver has
occurred. The EPA has considered these
comments and disagrees with them.
Relevant court decisions and the EPA’s
1971 certification regulations
recognized the role of the federal agency
to determine whether a waiver has
occurred. See Millennium Pipeline
Company, L.L.C., 860 F.3d at 700–01
(acknowledging that a project proponent
can ask the federal agency to determine
whether a waiver has occurred).
Consistent with the proposal, this final
rule clarifies the procedures for a federal
agency to notify a certifying authority
and project proponent that a waiver has
occurred. As discussed in section
III.G.2.d of this notice below and
pursuant to section 121.9 of the final
rule, if the certifying authority fails or
refuses to act before the date specified
by the federal agency, the federal agency
is required to communicate in writing to
the certifying authority and the project
proponent that waiver has occurred.
b. Tolling
Section 401 does not include a tolling
provision. Consistent with the proposal,
the EPA concludes in this final rule that
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the period of time to act on a
certification request does not pause or
stop for any reason once the
certification request has been received.
One recent court decision held that
withdrawing and resubmitting the same
certification request for the purpose of
circumventing the one-year statutory
deadline does not restart the reasonable
period of time. Hoopa Valley Tribe v.
FERC, 913 F.3d 1099 (D.C. Cir. 2019)
(Hoopa Valley). The EPA agrees with
the Hoopa Valley court that ‘‘Section
401’s text is clear’’ that one year is the
absolute maximum time permitted for a
certification, and that the statute ‘‘does
not preclude a finding of waiver prior to
the passage of a full year.’’ Id. at 1103–
04. The court of appeals noted that ‘‘[b]y
shelving water quality certifications, the
states usurp FERC’s control over
whether and when a federal license will
issue. Thus, if allowed, the withdrawaland-resubmittal scheme could be used
to indefinitely delay federal licensing
proceedings and undermine FERC’s
jurisdiction to regulate such matters.’’
Id. at 1104. The court further observed
that the legislative history supports its
interpretation of the statute’s plain
language, because ‘‘Congress intended
Section 401 to curb a state’s ‘dalliance
or unreasonable delay.’’’ Id. at 1104–05
(emphasis in original).
The Hoopa Valley case raised another
important issue: Perpetual delay of
relicensing efforts (in that case for more
than a decade) delays the
implementation and enforcement of
water quality requirements that have
been updated and made more stringent
in the years or decades since the last
relicensing process. See id. at 1101.60
This concern was also raised in
stakeholder recommendations received
during pre-proposal outreach. One
stakeholder specifically cited the delays
in the Hoopa Valley case as a ‘‘concrete
example of how the § 401 certification
process was being manipulated by a
state certification agency to delay
implementation of effective water
quality controls and enhancement
measures’’ and that ‘‘allowing the § 401
certification process to be used to
achieve further delays in the relicensing process is in turn an abuse of
60 This is a concern shared by the EPA. The
Agency has taken steps to promote its own
compliance with CWA deadlines, including acting
on State and Tribal water quality standard
submittals, because prior delays have created a
significant backlog of state submittals awaiting an
Agency action. Memorandum from David P. Ross,
Assistant Administrator of the Office of Water, to
Regional Administrators (June 3, 2019). These
delays and backlogs prevent States and Tribes from
timely implementing and enforcing updated
programs and standards that could otherwise be
improving water quality.
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the certification process.’’ Letter from
National Tribal Water Council to David
P. Ross, Assistant Administrator of the
Office of Water, EPA (Mar. 1, 2019).
Given the Hoopa Valley court’s plain
language analysis of the statute and the
potential water quality impacts from
allowing certification decisions to be
delayed, and the Agency’s agreement
with that analysis, section 121.6(e) of
the final rule provides:
The certifying authority is not authorized
to request the project proponent to withdraw
a certification request and is not authorized
to take any action to extend the reasonable
period of time other than specified in section
121.6(d).
This clear statement reflects the plain
language of section 401 and, as
described above, is supported by
legislative history. The Agency expects
this clarification to reduce delays and to
help ensure that certification requests
are processed within the reasonable
period of time established by the federal
agency, and at most, within one year
from receipt of the request.
Some commenters agreed that section
401 establishes an outer bound of one
year for the reasonable period of time.
However, other commenters argued that
the rule should allow flexibility on the
timeline beyond one year. Many of these
commenters argued States should not be
limited to one year if they have received
inadequate information and if projects
are complex. One commenter asserted
that section 401 allows for a State to
‘‘act on’’ a request within one year
without reaching a final decision in that
one year, and the commenter asserted
that this interpretation provides a legal
basis to allow extensions exceeding one
year.
Some commenters supported the
proposed provision to the effect that the
certifying authority is not authorized to
request the project proponent to
withdraw a request or take other action
to modify or restart the time period.
Most of these commenters stated that
the proposed rule makes clear the
allowable time may not exceed the
maximum of one year, and some of
these commenters agreed that no tolling
should be allowed. Some of these
commenters cited the Hoopa Valley
case, and one commenter cited the CWA
legislative history. However, some
commenters disagreed with the
suggestion that certifying authorities
should be prohibited from coordinating
with project proponents to modify or
restart the reasonable period of time, as
they asserted this would be contrary to
well-established practice. Some
commenters stated that a reasonable
period of time longer than one year may
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be warranted for complete information
to be submitted and for accommodating
adequate State review and certification
of projects. Most of these commenters
asserted that withdrawal and
resubmittal to toll the timeline is the
best way to manage unforeseen issues or
information gaps. A few of these
commenters stated that the words ‘‘for
the purpose of’’ in proposed rule section
121.4(f) (‘‘[t]he certifying authority is
not authorized to request the project
proponent to withdraw a certification
request or to take any other action for
the purpose of modifying or restarting
the established reasonable period of
time’’ (emphasis added)) creates a
subjective element depending on the
certifying authority’s intent, and would
create ambiguity in the rule if finalized
as proposed.
The Agency understands that in cases
where the certifying authority and
project proponent are working
collaboratively and in good faith, it may
be desirable to allow the certification
process to extend beyond the reasonable
period of time and beyond the one-year
statutory deadline. However, the final
rule reflects the statutory language that
the reasonable period of time may not
exceed one year, 33 U.S.C. 1341(a)(1),
and the Hoopa Valley holding that
certifying authorities and project
proponents lack discretion under the
CWA to engage in a coordinated effort
to extend the reasonable period of time.
Additionally, the Agency disagrees with
the commenter’s assertion that the term
‘‘act on’’ provides a legal basis to extend
the reasonable period of time beyond
one year. As discussed in section III.D
of this notice, a certifying authority may
take one of four actions on a
certification request: Grant certification,
grant certification with conditions, deny
certification, or expressly waive
certification. If a certifying authority
fails or refuses to take one of these
actions within the reasonable period of
time, the CWA provides that the
certifying authority will be deemed to
have waived the certification
requirement. 33 U.S.C. 1341(a)(1). The
Agency agrees with public commenters
that it would increase clarity to remove
the words ‘‘for the purpose of’’ in
proposed rule section 121.4(f), and the
final rule has been modified
accordingly. The Agency has also
clarified in final rule section 121.6(e)
that the certifying authority may take
action to extend the reasonable period
of time only in accordance with section
121.6(d). Because the final rule does not
contemplate that the reasonable period
of time can be tolled or ‘‘restarted,’’ as
described below in this section, final
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regulatory text section 121.6(e) was also
edited from the proposal so as to
increase clarity and to remove the term
‘‘restarting.’’
Many commenters asked for
clarification on a project proponent’s
ability to withdraw and resubmit a
request, noting that project proponents
often voluntarily withdraw and
resubmit applications. Some
commenters requested that the Agency
clarify what action a certifying authority
should take when a project proponent
withdraws a request. In response, the
Agency notes that nothing in the final
rule precludes project proponents from
voluntarily withdrawing requests of
their own accord. However, to prevent
scenarios like the Hoopa Valley case,
and to address the EPA’s policy concern
about section 401 delays, the Agency
expects that project proponents will
rarely voluntarily withdraw requests for
certification. The EPA expects that such
withdrawals will take place only if the
project plans have been modified such
that a new certification request is
required, or if the project is no longer
planned. If a project proponent
withdraws a certification request
because the project is no longer being
planned or if the project materially
changes from what was originally
proposed, as described above, the
certifying authority no longer has an
obligation to act on that request within
the reasonable period of time. In all
cases, project proponent withdrawals
would not result in tolling or pausing
the clock, but rather any resubmitted
request would be subject to the prefiling meeting request requirement.
After receipt by the certifying authority,
the new request would initiate a new
reasonable period of time as determined
by the federal agency.
Some commenters supported stopping
the clock when project proponents are
not responsive to requests for additional
information, or do not provide adequate
information to the certifying authority.
Some commenters requested
clarification on whether withdrawn
requests that are resubmitted would
restart a paused clock, or completely
restart the reasonable period of time.
Commenters also asked for clarification
on whether the contents of the request,
i.e., whether it is substantially the same
or a different request, would affect the
restarting of the clock.
The Agency is reaffirming in this final
rule that the clock does not toll for any
reason. The Agency disagrees that the
clock should toll while project
proponents gather additional
information or for any other reason, as
there is no statutory basis for tolling. As
described above, the reasonable period
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of time begins when a certifying
authority receives a certification request
as defined in the final rule, and it ends
when the certifying authority takes
action to grant, grant with conditions,
deny, or waive. The Agency is clarifying
that the reasonable period of time does
not continue to run after a certification
decision is issued regardless of whether
there is time remaining in the
‘‘reasonable period of time.’’ As
explained in section III.L of this notice,
a certifying authority cannot modify the
certification after issuing a decision to
the federal agency.
The EPA recognizes that there may be
project-specific situations when the
reasonable period of time may be
extended (not to exceed one year) to
account for project complexities or the
need to gather additional information.
Procedures for extending the reasonable
period of time are explained above and
included in the final rule. As discussed
above, the EPA expects voluntary
withdrawals of certification requests to
occur only when the project has
materially changed, as described above,
or is no longer planned. In such a case,
a new request would initiate a new
reasonable period of time and would not
‘‘restart’’ the clock from a prior
withdrawn request for certification. The
EPA would not expect such a new
request to be identical to a previously
withdrawn request for certification.
Many commenters noted that given
the proposed rule’s shortened
timeframes, limitations on States and
Tribes collecting additional information,
and provisions allowing the reasonable
period of time to begin prior to ‘‘an
application being complete,’’ States may
decide to deny certification rather than
risking the possibility that a federal
agency would determine that the State
waived certification. These commenters
noted that the process of successive
State denials of certification and the
resulting litigation could result in
delaying projects and defeating the
intent of the proposed rule to promote
efficiency and certainty.
The Agency disagrees with these
commenters. Neither the proposal nor
the final rule shortened the timeframe
for certification. The statute requires
action on a certification request within
a reasonable period of time not to
exceed one year. The proposed rule and
this final rule provide exactly the same
timeframe as the statute provides. To
the extent commenters view the
clarifications in the rule that the statute
does not authorize tolling or a
‘‘withdrawal and resubmit’’ scheme as
‘‘shortening the timeframe,’’ the Agency
disagrees because these mechanisms
that have previously been used to
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extend the reasonable period of time are
not authorized by the statute. Similarly,
neither the proposal nor this final rule
limits the ability of a certifying
authority to collect additional
information from a project proponent.
The final rule provides an objective list
of information that a project proponent
must provide to a certifying authority to
start the reasonable period of time. As
described above, this is intended to
provide transparency and predictability
so all parties understand what
information is necessary to start the
reasonable period of time. The Agency
encourages the parties to engage
throughout the certification process to
help ensure the certifying authority has
the information needed to act on the
certification request.
Additionally, the final rule includes a
number of provisions that should
reduce the need for certifying
authorities to deny certification based
on insufficient information. Section III.B
of this notice describes a mandatory prefiling meeting request, which will allow
project proponents and certifying
authorities to begin early conversations
about proposed projects prior to the
start of the reasonable period of time.
Additionally, section III.C of this notice
discusses factors that a project
proponent should consider in
determining when to submit a
certification request, as the timing of
request submission affects the
information that may be available for
certifying authorities to make timely
decisions. Section III.C identifies
opportunities for federal licensing and
permitting agencies to establish by rule
an appropriate point in the federal
licensing or permitting process when a
project proponent should request
certification. Finally, this final rule
establishes certain criteria that the EPA
as a certifying authority must follow
when making additional information
requests (e.g., only requesting
information that is related to the
discharge; only requesting information
that can be collected within the
reasonable period of time). The Agency
encourages all certifying authorities to
consider whether similar criteria would
help clarify expectations when
certifying authorities seek additional
information during the certification
process.
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G. Contents and Effects of Certification
1. What is the Agency finalizing?
Under the final rule, any action by the
certifying authority to grant, grant with
conditions, or deny a certification
request must be within the scope of
certification, must be completed within
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the reasonable period of time, and must
otherwise be in accordance with section
401 of the CWA. Alternatively, a
certifying authority may waive the
certification requirement, whether
expressly or by failing to act. The
Agency is finalizing the requirement
that any action on a certification request
must be in writing and must clearly
state whether the certifying authority
has chosen to grant, grant with
conditions, or deny certification. This
final rule also requires that any express
waiver of the certification requirement
by the certifying authority be in writing.
Under the final rule, a certification
must include certain supporting
information for each condition,
including, at a minimum, a statement
explaining why the condition is
necessary to assure that the discharge
from the proposed project will comply
with water quality requirements, and a
citation to the federal, State, or Tribal
law that authorizes the condition. The
final rule also includes slightly different
information requirements to support
conditions in a certification for issuance
of a general license or permit. These
requirements are described in section
III.M below. The EPA had proposed also
to require a statement of whether and to
what extent a less stringent condition
could satisfy applicable water quality
requirements. The EPA is not including
that provision in the final rule.
In circumstances where certification
is denied, the EPA is finalizing the
requirement that the written notification
of denial state the reasons for denial,
including the specific water quality
requirements with which the discharge
will not comply; a statement explaining
why the discharge will not comply with
the identified water quality
requirements; and if the denial is due to
insufficient information, the denial
must describe the specific water quality
data or information, if any, that would
be needed to assure that the discharge
from the proposed project will comply
with water quality requirements. The
Agency has made minor editorial
changes to these provisions in the final
rule to increase clarity, but the final rule
provisions retain the same meaning as
the proposed rule provisions. The final
rule also includes slightly different
information requirements to support a
denial of a certification for issuance of
a general license or permit. These
requirements are described in section
III.M below.
Under the final rule, if a certification
or denial does not include the
information requirements described
further below, the certification or the
denial will be considered waived by the
federal licensing or permitting agency.
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Likewise, if a certification condition is
not supported by the required
information, the condition will be
considered waived under the final rule.
Under the final rule, a waived condition
does not result in waiver of the entire
certification.
Additionally, if a certifying authority
fails to follow the procedural
requirements of section 401, such as the
public notice provisions, or fails to
complete its review within the
reasonable period of time, the
certification will be deemed waived.
2. Summary of Final Rule Rationale and
Public Comments
The CWA does not define the term
‘‘certification’’ or offer a definitive list of
its contents or elements. Section 304(h)
of the CWA requires the EPA to
promulgate factors which must be
provided in any section 401
certification, and under section 501(a)
the EPA may reasonably interpret the
statute to add content to those terms.
See 33 U.S.C. 1251(d); 33 U.S.C.
1361(a); Chevron, 467 U.S. at 843–44.
The EPA’s 1971 certification regulations
included certification requirements. In
this final rule, EPA is updating those
requirements for each type of
certification action and is more fully
addressing the effects of those actions.
a. Grant
Granting a section 401 certification
demonstrates that the certifying
authority has concluded that the
potential discharge into waters of the
United States from the proposed activity
will be consistent with water quality
requirements. Granting certification
allows the federal agency to proceed
with issuing the license or permit.
Consistent with the proposal, the final
rule requires all certification grants,
with or without conditions, to be in
writing and to include a written
statement that the discharge from the
proposed federally licensed or
permitted project will comply with
water quality requirements, as defined
at section 121.1(n) of the final rule. The
Agency has concluded that this is a
straightforward requirement and one
that promotes transparency for the
public.
b. Grant With Conditions
If the certifying authority determines
that the potential discharge from a
proposed activity would be consistent
with water quality requirements only if
certain conditions are met, the authority
may include such conditions in its
certification. The EPA proposed that
three elements be included in a
certification to support each condition.
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The Agency is finalizing two of those
elements.
Some commenters supported the
proposed requirement for certifying
authorities to cite applicable State or
Tribal law and to provide an
explanation of the necessity for each
condition. Some commenters agreed
that these requirements would provide
transparency, and assist the federal
license or permitting agency with
implementation and enforcement. Other
commenters asserted that these
requirements would be overly
burdensome for certifying authorities.
Some commenters asserted that
certifying authorities already generally
cite the applicable State laws and
regulations on which they base their
conditions, and other commenters said
that these requirements would create
new obligations for certifying
authorities. Other commenters
confirmed that the value of including
this information in every certification,
in terms of transparency and regulatory
certainty, will far outweigh the minimal
additional administrative burden of
including this information in a
certification. The EPA agrees that
requiring an explanation for the
necessity of the condition and a citation
to the underlying State, Tribal, or
federal laws, as appropriate, will
promote transparency and consistency
and is finalizing these requirements.
The EPA intends this provision to
require citation to the specific State or
Tribal statute or regulation or the
specific CWA provision, e.g., CWA
section 301(b)(1)(C), that authorizes the
condition, and that general citations to
CWA section 401 or other general
authorization or policy provisions in
federal, State, or Tribal law would be
insufficient to satisfy the proposed
requirement.
Some commenters also supported the
proposed requirement for certifying
authorities to identify whether a less
stringent condition could satisfy
applicable water quality requirements.
However, most commenters asserted
that this requirement would be
burdensome for certifying authorities,
suggesting that States and Tribes would
need to conduct two detailed analyses
for the certification: One to establish
appropriate conditions, and another to
evaluate whether a less stringent
condition would be sufficient. A
commenter suggested that proposed
section 121.5(d)(1) may conflict with
proposed section 121.5(d)(3). This
commenter recommended replacing
section 121.5(d)(3) with a requirement
that the certifying authority include
only the least stringent conditions
necessary to satisfy applicable water
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quality requirements. The EPA has
considered these comments. Under the
final rule, certifying authorities will not
have to identify whether and to what
extent a less stringent condition could
satisfy applicable water quality
requirements. As described in the
preamble for the proposed rule, this
provision is included in the EPA’s
existing certification regulations for the
NPDES permit program (see 40 CFR
124.53(e)(3)), but the EPA agrees with
the commenters that asserted that it may
be difficult to provide an explanation as
to why a condition is necessary and to
also identify a less stringent condition
that could satisfy water quality
requirements.
The EPA disagrees with the
suggestion that the information
requirements for conditions in section
121.5(d)(1) and (2) of the final rule
would be burdensome for certifying
authorities. Certifying authorities
should already be generating this type of
information to build complete and
legally defensible administrative records
to support their certification actions. As
a general matter, if a certifying authority
determines that one or more conditions
are necessary for a section 401
certification, the certifying authority
should clearly understand and articulate
why it is necessary and should identify
the legal authority for requiring such
conditions. Including this information
in the certification itself provides
transparency for the project proponent,
the federal licensing and permitting
agency, and the public at large. For
these reasons, the EPA has determined
that these are appropriate requirements,
and they are included in the final rule.
During pre-proposal stakeholder
engagement, the EPA also heard from
federal agencies that, because several
court decisions have concluded that
such agencies do not have authority to
‘‘review and reject the substance of a
State certification or the conditions
contained therein,’’ Am. Rivers, Inc.,
129 F.3d at 106, non-water qualityrelated conditions are often included in
federal licenses and permits. Once
included in the federal license or
permit, federal agencies have found it
challenging to implement and enforce
these non-water quality-related
conditions. Additionally, stakeholders
in pre-proposal engagement and in
public comments expressed concern
that federal agencies do not always
enforce the certification conditions
incorporated in their federal licenses or
permits.
EPA agrees that it is important for
federal agencies to have a clear
understanding of the basis for
certification conditions, because
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conditions must be included in a federal
license or permit. Several appellate
courts have analyzed the plain language
of the CWA and concluded that the Act
‘‘leaves no room for interpretation’’ and
that ‘‘state conditions must be’’
included in the federal license or
permit. Sierra Club v. U.S. Army Corps
of Engineers, 909 F.3d 635, 645 (4th Cir.
2018) (emphasis in original); see also
U.S. Dep’t of Interior v. FERC, 952 F.2d
538, 548 (D.C. Cir. 1992) (‘‘FERC may
not alter or reject conditions imposed by
the states through section 401
certificates.’’); Am. Rivers, Inc. v. FERC,
129 F.3d 99, 107 (2d Cir. 1997)
(recognizing the ‘‘unequivocal’’ and
‘‘mandatory’’ language of section
1341(d)); Snoqualmie Indian Tribe v.
FERC, 545 F.3d 1207, 1218 (9th Cir.
2008) (collecting cases). The EPA
acknowledges commenters who asserted
that federal agencies may not
consistently enforce certification
conditions, and also acknowledges that
federal agencies can apply discretion in
enforcement decisions. However,
providing a citation to the legal
authority underpinning a certification
condition is one way to make it easier
for federal agencies to enforce these
conditions. Federal agencies during preand post-proposal engagement
acknowledged that this information will
help them understand how best to
implement and enforce certification
conditions. In addition, including this
information in each certification will
provide transparency for the overall
certification process and allow the
project proponent to understand the
legal basis for each condition and to
assess whether a condition is within the
statute’s lawful scope and what recourse
may be available to challenge it in an
appropriate court of competent
jurisdiction. Overall, the EPA concludes
that the benefits of providing this
information will significantly outweigh
any additional administrative burden
that certifying authorities may incur
because of these new requirements.
One commenter asserted that the
language in proposed section 121.8(b)
should be changed from ‘‘[t]he license
or permit must clearly identify any
conditions that are based on the
certification’’ to ‘‘[t]he license or permit
must clearly identify any conditions
that are from the certification.’’ This
commenter asserted that the conditions
cannot be based on the certification
because federal agencies do not have
authority to develop their own
certification conditions or to modify a
condition in a certification prior to
incorporating it into the federal permit.
The EPA has made this change in
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section 121.10 of the final rule for
clarity and to reaffirm that if a condition
meets the procedural requirements of
section 401 and includes the elements
listed in 121.7(d) of the final rule, the
condition must be incorporated into the
federal license or permit in its entirety,
as drafted by the certifying authority.
Consistent with the proposal, under the
final rule, deficient certification
conditions do not invalidate the entire
certification, nor do they invalidate the
remaining conditions in the
certification. As discussed below, the
Agency has clarified in the final rule
that conditions that do not meet these
requirements will be deemed waived.
c. Deny
A certifying authority may choose to
deny certification if it is unable to
certify that the discharge from a
proposed project would be consistent
with applicable water quality
requirements. If a certification is denied,
the federal agency may not issue a
license or permit for the proposed
project. Id. at 1341(a). Consistent with
the proposal, the final rule requires
certification denials to be made in
writing and to include three elements to
support certification denials. The
Agency has made minor editorial
changes to these provisions in the final
rule to increase clarity, but the final rule
provisions retain the same meaning as
the proposed rule provisions.
Some commenters agreed with the
proposal to require certain information
in a certification denial. One commenter
asserted that when preparing denials, it
would be helpful for certifying
authorities to specify water quality
requirements with which the proposed
project will not comply, as this would
assist federal agencies with their duty to
determine whether a section 401
certification facially satisfies the
requirements of section 401. Another
commenter recommended that the final
rule also require a statement that there
is no certification condition which
would prevent noncompliance with
water quality requirements.
Other commenters opposed the
proposed requirement that certification
denials include ‘‘the specific water
quality data or information, if any, that
would be needed to assure that the
discharge from the proposed project
complies with water quality
requirements.’’ These commenters
asserted that this requirement was
vague, unnecessary, and burdensome
and further asserted that it would
improperly place a new burden on
certifying authorities that should be
borne by project proponents to show
why their project complies with water
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quality requirements. A few of these
commenters recommended that
insufficient information should be a
basis for denial.
As a general matter, the EPA disagrees
with the suggestion that including this
information in a denial would be overly
burdensome for certifying authorities.
Indeed, a number of States asserted in
public comments that the primary
reason why certifications cannot be
issued within the reasonable period of
time is that project proponents have not
provided sufficient information or a
‘‘complete’’ certification request. If this
is the case, certifying authorities should
be able to identify what information is
lacking that precludes a determination
that the project will comply with water
quality requirements, as the term is
defined in the final rule. Clearly
establishing a record to support the
basis for a denial should already be
done as a matter of course to establish
a complete defensible administrative
record for the certifying authority’s
action. Further, any denial should be
informed by the record before the
certifying authority and should be
issued with information sufficient to
allow the project proponent to
understand the basis for denial and have
an opportunity to modify the project or
to provide new or additional
information in a new certification
request.
The EPA is finalizing the requirement
that a certification denial be in writing
and include three elements to support
the denial. The required elements will
lead to more transparent decisionmaking and a more complete record of
the administrative action. The final
rule’s requirements may also facilitate
discussions between certifying
authorities and project proponents
about what may be necessary to obtain
a certification should the project
proponent submit a new certification
request in the future. A certifying
authority’s explanation of why a
discharge from a proposed project will
not comply with relevant water quality
requirements will also assist reviewing
courts in understanding whether the
denial is appropriately based on the
scope of certification discussed in
section III.E of this notice.
Some commenters asserted that the
proposed rule would prohibit certifying
authorities from denying certification
based on a lack of information sufficient
to grant certification. The EPA disagrees
with these commenters. Indeed, by
requiring that ‘‘if the denial is due to
insufficient information, the denial
must describe the specific water quality
data or information, if any, that would
be needed to assure that the discharge
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from the proposed project will comply
with water quality requirements,’’ the
final rule reaffirms and clarifies that
insufficient information about the
proposed project can be a basis for a
certification denial. If the certifying
authority determines that there is no
specific data or information that would
allow the certifying authority to
determine that the discharge will
comply with water quality
requirements, it should indicate as such
and provide the basis for the
determination in its written decision to
deny certification.
As noted in the preamble to the
proposed rule, the EPA is aware that
some certifying authorities have
requested ‘‘additional information’’ in
the form of multi-year environmental
investigations and studies, including
completion of a NEPA review, before
the certifying authority would act on a
certification request. As discussed in
section III.H of this notice, the final rule
explicitly prohibits the EPA from
requesting additional information that
cannot be generated within the
reasonable period of time. The rationale
for this prohibition applies to all
certifying authorities; the Agency
believes that such requests for
additional information, regardless of
which certifying authority generates
such requests, would be contrary to the
plain language of the statute, which
requires certifying authorities to act on
a request within a reasonable period of
time that does not exceed one year.
While additional information requests
may be a necessary part of the
certification process, such requests may
not result in extending the period of
time beyond which the CWA requires
certifying authorities to act.
d. Waiver
When a certifying authority waives
the requirement for a certification,
under this final rule the federal agency
may proceed to issue the license or
permit in accordance with its
implementing regulations. A certifying
authority may waive expressly by
issuing a written statement that it is
waiving certification, or implicitly
waive by failing or refusing to act.
Waiver may occur due to a failure or
refusal to act in accordance with the
procedural requirements of section 401
or within the reasonable period of time
(see section III.F of this notice), or by
failing or refusing to provide
information required to support
certifications (section 121.7(c) of the
final rule) or denials (section 121.7(e) of
the final rule). A condition may also be
waived by failing or refusing to provide
information required to support
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i. Explicit Waiver
Under the final rule, a certifying
authority may waive expressly by
issuing a written statement that it is
waiving the requirement for
certification. Some commenters
supported allowing certifying
authorities to explicitly waive
certification. One commenter observed
that doing so could allow the federal
permitting authority to proceed more
quickly with issuing a license or permit
if it need not wait until the end of the
reasonable period of time. Several
commenters asserted that the statute
does not provide for express waiver. A
few other commenters stated that
certifying authorities should be required
to provide a detailed statement
explaining their reasoning for waiving
certification.
The EPA has determined that,
although the statute does not explicitly
provide for express or affirmative
waiver, providing this opportunity in
the final rule is not inconsistent with a
certifying authority’s ability to waive
through failure or refusal. See EDF v.
Alexander, 501 F. Supp. 742, 771 (N.D.
Miss. 1980) (‘‘We do not interpret [the
Act] to mean that affirmative waivers
are not allowed. Such a construction
would be illogical and inconsistent with
the purpose of this legislation.’’). The
EPA also agrees with the commenters
who stated that allowing explicit
waivers may create efficiencies in
circumstances where the certifying
authority knows early in the process
that it will waive. The EPA is not
requiring certifying authorities to
provide a detailed statement explaining
their reasoning for waiving, as the
Agency recognizes certifying authorities
may waive for a variety of reasons.
Consistent with the proposal, the final
rule provides that a certifying authority
may expressly waive by providing
written notification of waiver to the
project proponent and federal agency.
An express or affirmative waiver does
not reflect a determination that the
discharge will comply with water
quality requirements. Instead, an
express or affirmative waiver indicates
that the certifying authority has chosen
not to act on a certification request. The
EPA agrees with the commenter who
noted that express or affirmative waiver
enables the federal agency to proceed
with issuing a license or permit where
the certifying authority has stated it
does not intend to act, thereby avoiding
the need to wait for the reasonable
period of time to lapse.
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ii. Implicit Waiver
The plain language of section
401(a)(1) provides that the certification
requirement is waived when a certifying
authority ‘‘fails or refuses to act on a
request for certification, within a
reasonable period of time (which shall
not exceed one year).’’ 33 U.S.C.
1341(a)(1). The Agency proposed to
define ‘‘fails or refuses to act’’ with the
intention of providing greater clarity for
project proponents, certifying
authorities, and federal agencies about
when an implicit or constructive waiver
could occur. The Agency is not
finalizing the proposed definition of
‘‘fails or refuses to act’’ and is instead
providing additional clarification in the
final rule about specific procedural
failures that could trigger a federal
agency to determine that waiver has
occurred.
Under the proposed rule, waiver
would occur if the certifying authority
actually or constructively failed or
refused to act within the scope of
certification or within the reasonable
period of time. The proposed rule
preamble explained that the phrase
‘‘fails or refuses to act’’ lends itself to at
least two interpretations. Under one
interpretation, a certifying authority that
takes no action, or refuses to take action,
has waived certification. Under an
alternative interpretation, a certifying
authority that takes action beyond the
scope of section 401 has failed or
refused to act in a way Congress
intended and has waived certification.
The proposed definition was intended
to resolve this ambiguity in the statute.
Some commenters supported the
proposed definition of ‘‘fail or refuse to
act,’’ including the implicit or
constructive waiver provision. A few
commenters cited City of Tacoma v.
FERC, 460 F.3d 53 (D.C. Cir. 2006), in
support of the proposed rule, and these
commenters agreed that it would be
appropriate for federal agencies to
facially review certifications. Some of
these commenters said that this
approach is not supported by the text of
the statute or by congressional intent.
Many commenters asserted that the
legislative history of the waiver
provision makes clear that it was
intended only to prevent a State’s sheer
inactivity. One of these commenters
noted that the legislative history
acknowledges that the waiver provision
cannot protect against arbitrary State
agency action and that the courts are the
forum to challenge a State’s refusal to
give a certification.61 Some commenters
61 The EPA observes that some legislative history
related to section 401 is internally inconsistent and
should not be relied upon as a definitive statement
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stated that allowing the federal agency
to review a certification denial as a
failure to act is unreasonable and
essentially grants the federal
government veto power over State
action.
The EPA disagrees with commenters
who asserted that federal agencies
cannot review certifications. As
discussed below, some courts have
concluded that federal agencies have an
affirmative obligation to determine
whether a certifying authority has
complied with requirements related to a
section 401 certification. See City of
Tacoma v. FERC, 460 F.3d 53, 67–68
(D.C. Cir. 2006); Keating v. FERC, 927
F.2d 616, 622–623, 625 (D.C. Cir. 1991).
The final rule affirms that it is the
responsibility of the federal agency to
facially review certifications to ensure
that certifying authorities have
complied with the procedural
requirements of section 401. If a federal
agency, in its review, determines that a
certifying authority failed or refused to
comply with the procedural
requirements of the Act, including the
procedural requirements of this final
rule, the certification action, whether it
is a grant, grant with conditions, or
denial, will be waived.
After considering public comments
and other enhancements in this final
rule, the Agency is not finalizing the
definition of ‘‘fail or refuse to act.’’ The
Agency concludes that the key
ambiguous term in this statutory phrase
is ‘‘to act’’ and reasonably interprets this
term to mean not just any act or action,
but an act or action that is ‘‘in
conformance with applicable statutes
and regulations.’’ The final rule
provides a clear and unambiguous list of
actions that are not in conformance with
section 401 and that therefore amount to
waiver. The clarity in the final rule
provides certifying authorities with
sufficient notice that all actions on
certification requests must be taken in
accordance with the procedural
requirements of the statute and this final
of congressional intent. The history quoted by these
commenters (H.R. Rep. No. 92–911, at 121–22
(1972)) says both that a failure or refusal amounts
to waiver and that a refusal must be addressed in
a State court challenge brought by the project
proponent. ‘‘In such situations, where there is
conflicting legislative history and ‘the statute is
silent or ambiguous with respect to the specific
issue,’ our [the court’s] role is to determine
‘whether the agency’s answer is based on a
permissible construction of the statute.’’’ Smriko v.
Ashcroft, 387 F.3d 279, 288 (3d Cir. 2004) (quoting
Chevron); United States v. Deardorff, 343 F. Supp.
1033, 1037–38 (S.D.N.Y 1971) (the canon of
statutory interpretation that ‘‘legislative history not
be used to interpret a statute that is clear and
unambiguous on its face . . . is particularly apposite
where the legislative history is itself somewhat
ambiguous.’’).
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rule. Accordingly, the Agency has
decided that a separate definition of
‘‘fail or refuse to act’’ is not necessary.
Treatment of procedural deficiencies as
waivers is consistent with the EPA’s
existing regulations for the NPDES
program. See 40 CFR 124.53(e)(2)
(providing that for certification on a
draft permit, ‘‘[f]ailure to provide such
citation waives the right to certify with
respect to that condition’’).
The waiver provision in section 121.9
of the final rule has been expanded to
provide additional clarity on the
circumstances that amount to a failure
or refusal to act. As discussed in section
III.G.2.e of this notice, a federal agency
must determine whether waiver has
occurred, either expressly or implicitly
through a failure or refusal to act.
Section 401 provides that certifying
authorities may take one of four possible
actions on a certification request: Grant,
grant with conditions, deny, or waive.
As long as a certifying authority takes
one of these four actions within the
reasonable period of time and in
accordance with the procedural
requirements of the Act and this final
rule, the certifying authority will have
acted on the certification request.
However, section 401 provides that
where a certifying authority ‘‘fails or
refuses’’ to act on a certification request,
certification shall be waived. 33 U.S.C.
1341(a)(1). Under the final rule, a
certifying authority waives certification
if it fails or refuses to act on a
certification request in accordance with
the procedural requirements of section
401 and this final rule, including but
not limited to issuing public notice,
acting within the reasonable period of
time, providing certification for projects
that are within their jurisdiction,
providing certification decisions in
writing, and including the information
required to support a certification or
denial. The final rule also provides that
a certification condition may be waived
if the certifying authority fails or refuses
to provide information required in
section 121.7(d). Under the final rule,
deficient conditions are severable from
the certification. In other words, waiver
of a specific certification condition does
not waive the entire certification.
e. Federal Agency Review of
Certifications
The proposed rule would have
required federal agencies to review a
certification action to determine
whether it was issued in accordance
with the procedural requirements of the
Act and determine whether the action
was taken within the ‘‘scope of
certification’’ as provided in the rule.
The EPA has considered public
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comments and relevant court decisions
and is retaining in the final rule the
requirement that federal agencies review
certification actions for compliance with
the procedural requirements of section
401, including procedural requirements
in this final rule. However, the final rule
does not require federal agencies to
substantively evaluate or determine
whether a certification action was taken
within the scope of certification. As a
general matter, federal agencies may not
readily possess the expertise or detailed
knowledge concerning water quality
and State or Tribal law matters that
would be necessary to make such
substantive determinations. The EPA
has determined that other provisions of
this final rule, such as the definitions of
‘‘water quality requirements,’’
‘‘discharge,’’ and ‘‘certification,’’ and
the information requirements for
certification conditions and denials
listed in section 121.7(d) and section
121.7(e), will help ensure that certifying
authorities have the information and
necessary tools to act on a certification
request within the scope of certification
as provided in this rule. The Agency is
not finalizing the provisions in section
121.6(c) and section 121.8(a)(1)–(2) of
the proposed rule.
i. Federal Agency Procedural Review
The final rule requires federal
agencies to determine whether a
certifying authority’s certification,
certification condition, or denial
includes the information requirements
in sections 121.7(c), 121.7(d), or 121.7(e)
of the final rule. This federal agency
review is entirely procedural in nature
and does not require any specific
expertise or knowledge in water quality
or State or Tribal law. Under the final
rule, the federal agency’s review is
limited to determining whether the
certification action was taken in
accordance with procedural
requirements and whether the
certification, condition, or denial
includes all of the required information.
Federal agency review under the final
rule does not include a substantive
evaluation of the sufficiency of that
information.
A few commenters supported the
proposed requirement that federal
agencies substantively review water
quality certifications and asserted that
such reviews would bring clarity and
certainty to the water quality
certification process. These commenters
also supported the proposed authority
for federal agencies to determine that
constructive waiver occurred for
certifications, conditions, and denials
that failed to comply with procedural
requirements of the rule. Some
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commenters stated that allowing federal
agencies to review and reject
certifications, conditions, and denials
would violate the rights of States and
Tribes. Some commenters stated that
section 401(a)(1), which provides that
‘‘[n]o license or permit shall be granted
if certification has been denied,’’
prohibits the federal government from
vetoing denials. Some commenters
stated that the EPA did not provide any
legal support from the CWA or case law
for its proposed approach of allowing
federal review of certifications,
conditions, and denials.
The Agency has made modifications
in the final rule text to clarify that
federal agency review of certifications,
conditions, and denials is procedural in
nature and does not extend to
substantive evaluations. The EPA’s final
regulatory text at sections 121.8 (Effect
of denial of certification), 121.9
(Waiver), and 121.10 (Incorporation of
certification conditions into the license
or permit) contemplate that the federal
licensing or permitting agency will
review certifications only to ensure that
certifying authorities have included
certain required elements and
completed certain procedural aspects of
a section 401 certification. Under the
final rule, federal agencies are required
to determine whether certification
denials include the three elements listed
in section 121.7(e). If certification
denials do not include these three
elements, the certifying authority has
‘‘fail[ed] or refuse[d] to act’’ (as
explained in section III.G.2.d of this
notice) and therefore has waived
certification. Similarly, federal agencies
are required to determine whether
certification conditions include the two
elements listed in section 121.7(d) of the
final rule. If the certification conditions
do not satisfy the requirements by
listing these two elements, the certifying
authority has ‘‘fail[ed] or refuse[d] to
act’’ and will waive that deficient
certification condition.
In delineating such a role for federal
licensing or permitting agencies, the
EPA has interpreted the statute
reasonably and appropriately. In City of
Tacoma, Washington v. FERC, the Court
of Appeals for the D.C. Circuit noted
that ‘‘[i]f the question regarding the
state’s section 401 certification is not
the application of state water quality
standards but compliance with the
terms of section 401, then [the federal
agency] must address it. This
conclusion is evident from the plain
language of section 401: ‘No license or
permit shall be granted until the
certification required by this section has
been obtained or has been waived.’ ’’
460 F.3d at 67–68 (citing 33 U.S.C.
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1341(a)(1)) (emphasis in original). The
court went on to explain that even
though the federal agency did not need
to ‘‘inquire into every nuance of the
state law proceeding . . . it [did] require
[the federal agency] at least to confirm
that the state has facially satisfied the
express requirements of section 401.’’
Id. at 68; see also Hoopa Valley Tribe v.
FERC, 913 F.3d 1099, 1105 (D.C. Cir.
2019) (‘‘had FERC properly interpreted
Section 401 and found waiver when it
first manifested more than a decade ago,
decommissioning of the Project might
very well be underway’’); Airport
Communities Coalition v. Graves, 280 F.
Supp.2d 1207, 1217 (W.D. Wash. 2003)
(holding that the Army Corps had
discretion not to incorporate untimely
certification conditions).
Some commenters stated that
allowing federal review of water quality
certifications would ignore the fact that
the States and Tribes are the experts on
their water resources and know what is
necessary to assure that the water
quality standards passed under State
and Tribal law are met. Another
commenter requested clarification about
whether the EPA would provide any
assistance or guidance to federal
agencies as they review certification
denials and asked for clarification about
how the EPA would ensure consistency
and reliability across such decisions.
As discussed below, the final rule
does not require the federal agency to
make a substantive inquiry into the
sufficiency of the information provided
in support of a certification, condition,
or a denial. Rather, the final rule
requires only that the federal agency
confirm that the certifying authority has
complied with procedural requirements
of the Act and these regulations and has
included the required information in a
certification, condition, or denial.
Although this limited review function
may be new to some federal agencies, it
is consistent with the EPA’s own
longstanding practice under its NPDES
regulations implementing section 401
that allow the EPA to make such
determinations under certain
circumstances. See 40 CFR 124.53(e).
Under the final rule, if a certification,
condition or denial meets the
procedural requirements of section 401
and this final rule, the federal agency
must implement the certifying
authority’s action, irrespective of
whether the federal agency may disagree
with aspects of the certifying authority’s
substantive determination.
ii. Federal Agency Review of Scope
The proposed rule would have
required federal licensing and
permitting agencies to review and
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determine whether certifications,
conditions, and denials are within the
‘‘scope of certification,’’ as articulated in
this final rule. The final rule does not
include this additional substantive
federal agency review requirement.
A number of commenters supported
the proposed language that would allow
a federal agency to set aside certification
conditions or denials that are not within
the ‘‘scope of certification.’’ Some of
these commenters agreed that
conditions should not be included in
licenses or permits if they do not meet
the definition of ‘‘water quality
requirements’’ under the final rule. One
of these commenters stated that federal
agency review of certifications would
allow issues of scope to be resolved
expeditiously by the federal agency
through the federal licensing or
permitting process, rather than by
forcing the applicant to challenge the
certification decision through a separate
administrative or judicial appeal
process, which could take months or
years to resolve. The commenter also
asserted that the proposal would allow
the federal agency to protect the
integrity of its licensing or permitting
process by rejecting conditions that
exceed the scope of section 401 even if
the applicant chooses not to challenge
the conditions. Another commenter
asserted that the federal agency has an
obligation to determine that a
certification decision ‘‘complies with
the terms of section 401,’’ and that this
obligation is supported by case law. The
commenter maintained that this
obligation logically also includes the
obligation to confirm that certification
conditions are within the scope of
section 401.
Other commenters asserted that the
proposed approach would conflict with
sections 401(a) and (d) because, they
assert, that under section 401(a) a
federal license or permit may not issue
if certification is denied, and under
section 401(d), federal agencies have no
authority to review or veto State or
Tribal conditions or certifications.
These commenters stated that the
proposed provision would improperly
circumvent judicial review. Some
commenters stated that the proposed
rule’s federal agency review provision is
in contravention of the legislative
intent. Some commenters stated that
judicial precedent prohibits the EPA
from authorizing federal agencies to
review the scope or grounds for State
and Tribal decisions on water quality
certifications. One commenter stated
that the authority of federal agencies to
review State section 401 certifications is
narrow and limited to ensuring that the
State complies with the specific
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procedural requirements set forth in
section 401, citing City of Tacoma,
Wash. v. FERC, 460 F.3d 53 (D.C. Cir.
2006); Alcoa Power Generating Inc. v.
FERC, 643 F.3d 963 (D.C. Cir. 2011);
Keating v. FERC, 927 F.2d 616 (D.C. Cir.
1991). A few commenters stated that a
federal agency’s scope of review would
lead to more confusion and litigation
and would make the certification
process more time consuming.
The Agency has considered this
diverse range of opinions. For the
reasons explained above, the Agency
has concluded that under the final rule,
federal agencies have an affirmative
obligation to review certifications to
ensure that certifying authorities have
complied with procedural requirements
and have included the required
information for certifications,
conditions, and denials. But the final
rule does not authorize federal agencies
to substantively review certifications or
conditions to determine whether they
are within the scope of certification. The
EPA disagrees with commenters who
assert that section 401(d)
unambiguously requires one approach
or another. As described throughout the
proposed and final rule preambles, there
are widely varying views and
interpretations of section 401, and
relevant court decisions reflect these
disparate views and interpretations. The
final rule provides a framework for
section 401 water quality certifications
that is reasonable, is supported by the
language of the CWA, and will provide
greater clarity and regulatory certainty.
One commenter stated that none of
the cases cited by the EPA in the
proposed rule suggested that federal
agencies have authority to review the
substance of State-imposed section 401
conditions to determine whether they
comply with the EPA’s view of the
appropriate scope of the statute. The
same commenter stated that the
proposal’s rationale that federal
agencies have struggled to enforce State
certification conditions misses the point
and that enforcement of certification
conditions may also be initiated by the
appropriate States through State law,
citing Delaware Riverkeeper Network v.
Secretary of Penn. Dep’t of Envt’l
Protection, 833 F.3d 360 (3d Cir. 2016).
One commenter stated that EPA Office
of General Counsel opinions have
previously ‘‘interpreted [401(d)] broadly
to preclude federal agency review of
state certifications,’’ citing Roosevelt
Campobello Inter. Park v. U.S. EPA, 684
F.2d 1041, 1056 (1st Cir. 1982) (citing
opinions of the EPA Office of General
Counsel on the issue). Some
commenters also stated that to review a
condition to determine whether it falls
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substantively within the scope of water
quality requirements would create a
substantial burden on federal agencies
making these types of determinations.
Some commenters stated that the
proper place for water quality
certifications and their conditions to be
challenged is in court, particularly State
court. Some commenters stated that
State courts are the appropriate venue to
challenge water quality certifications
because those certifications are issued
under State law and State courts know
how best to interpret State law. Some
commenters stated that the legislative
history for the 1972 amendments to the
CWA repeatedly shows that Congress
intended conflicts regarding the scope
of section 401 to be resolved by State
courts, not federal agencies.
For the reasons articulated in the
proposed and final rule preambles, the
EPA disagrees with the proposition that
relevant case law precludes any federal
review of certification conditions. The
EPA also disagrees with one
commenter’s assertion that, as a general
matter, States may independently
enforce certification conditions through
State law. See section III.K.2.a of this
notice for further discussion on the
enforcement of certification conditions
within federal licenses or permits.
Although the proposed requirement was
consistent with the principle that
federal agencies have the authority to
reject certifications or conditions that
are inconsistent with the requirements
and limitations of section 401 itself (see
City of Tacoma, Wash. v. FERC), the
final rule reflects the EPA’s conclusion
that courts of competent jurisdiction are
better suited to evaluate the underlying
State or Tribal law to determine whether
a specific certification condition or the
basis for a denial is within the scope of
certification. The EPA also
acknowledges that existing lower court
case law on this topic is mixed, and that
requiring federal agencies to conduct a
substantive review to determine
whether conditions or denials are
within the scope of certification could
create new litigation risk (including
litigation-related staffing and cost
burdens) for those federal agencies and
further complexity and uncertainty
concerning the appropriate path for
remedying a substantively unlawful
certification condition or denial. The
final rule’s scope of certification,
requiring that ‘‘conditions’’ be within
that scope, and requiring certifying
authorities to provide specific
information in support of a condition or
a denial, will help provide reviewing
courts with the information and tools
necessary to conduct a proper
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evaluation of certification conditions
and denials.
iii. Remedying Deficient Conditions and
Denials
The proposed rule would have
allowed federal agencies to provide
certifying authorities with the
opportunity to remedy deficient
conditions and denials. However, in
response to public comments and to
increase clarity in the final rule, the
Agency is not finalizing these
provisions.
Commenters expressed a variety of
viewpoints about whether federal
agencies can or should provide
certifying authorities with the
opportunity to remedy deficient
conditions and denials. One commenter
did not support providing certifying
authorities with the opportunity to
remedy conditions that are not related
to water quality, while other
commenters asserted that the ability to
remedy deficient conditions should be
mandatory rather than discretionary.
Some commenters expressed concern
regarding timeframes for federal review,
notification to States and Tribes, and
opportunity for States and Tribes to
remedy water quality certifications and
suggested that the opportunity to cure a
deficient condition could effectively
shorten the reasonable period of time.
Commenters also requested that
certifying authorities should be able to
remedy deficient conditions regardless
of whether the reasonable period of time
has expired, or at least up until the oneyear maximum reasonable period of
time specified in the CWA. Some
commenters expressed concern that the
proposal did not provide an
administrative appeal process for a
certifying authority to dispute that
conditions and denials are in fact
‘‘deficient.’’
The Agency has considered these
comments and determined not to
include in the final rule an express
allowance for certifying authorities to
remedy deficient conditions after the
certification action is taken. The Agency
recognizes and agrees with many of the
implementation and process-related
concerns raised by commenters,
including concerns that there may not
be sufficient time to remedy deficient
conditions during the established
reasonable period of time. The EPA
disagrees with the commenters who
asserted that the certifying authority
must be given an opportunity to remedy
deficient conditions even after the
reasonable period of time has expired.
The final rule contains additional
clarification on procedural and
substantive requirements. These
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42269
clarifications should provide certifying
authorities with the information and
tools necessary to act on certification
requests consistent with section 401 and
within the scope of certification
provided in this final rule, reducing the
need to remedy deficient conditions or
denials. The EPA has concluded in the
final rule that if a federal licensing or
permitting agency wishes to create
procedures whereby certifying
authorities may remedy deficient
conditions or denials, it may do so in its
own water quality certification
regulations. Such procedures may not
be used to exceed the one-year statutory
limit on the reasonable period of time.
The approach in the final rule provides
sufficient flexibility to those federal
agencies should they wish to update
their water quality certification
regulations to provide additional
procedures for remedying deficient
certification conditions or denials.
H. Certification by the Administrator
1. What is the Agency finalizing?
In the final rule, the Agency is
establishing specific procedures
regarding public notice and requests for
additional information that apply only
when the EPA is the certifying
authority. As discussed in section III.B
of this notice, the Agency proposed to
require pre-filing meeting procedures
only when the EPA is the certifying
authority, but the final rule expands the
requirement for pre-filing meeting
requests to all project proponents,
including federal agencies when they
seek certification for general licenses or
permits, regardless of the certifying
authority. The rationale for expanding
this practice to all section 401 certifying
authorities as a best practice for all
certification actions is more fully
explained in section III.B of this notice.
2. Summary of Final Rule Rationale and
Public Comments
Section 401(a)(1) of the CWA provides
that ‘‘[i]n any case where a State or
interstate agency has no authority to
give such a certification, such
certification shall be from the
Administrator.’’ 33 U.S.C. 1341(a)(1).
Currently, all States have authority to
implement section 401 certification
programs. However, the EPA acts as the
certifying authority in two scenarios: (1)
On behalf of federally recognized Indian
Tribes that have not received TAS for
section 401, and (2) on lands of
exclusive federal jurisdiction, such as
Denali National Park. When acting as a
certifying authority, the EPA is subject
to the same timeframes and section 401
certification requirements as other
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certifying authorities. This section
outlines additional procedures that
apply only when the EPA is the
certifying authority.
The first scenario arises when Tribes
do not obtain TAS authorization for
section 401 certifications. As discussed
in section II.F.1 of this notice, Tribes
may obtain TAS authorization for
purposes of issuing CWA section 401
certifications. If a Tribe does not obtain
TAS for section 401 certifications, the
EPA is responsible to act as the
certifying authority for projects resulting
in a potential discharge into waters of
the United States on Tribal land.
The second scenario arises when the
federal government has exclusive
federal jurisdiction over land. The
federal government may obtain
exclusive federal jurisdiction in
multiple ways, including where the
federal government purchases land with
State consent to jurisdiction, consistent
with article 1, section 8, clause 17 of the
U.S. Constitution; where a State chooses
to cede jurisdiction to the federal
government; and where the federal
government reserved jurisdiction upon
granting statehood. See Collins v.
Yosemite Park Co., 304 U.S. 518, 529–
30 (1938); James v. Dravo Contracting
Co., 302 U.S. 134, 141–42 (1937);
Surplus Trading Company v. Cook, 281
U.S. 647, 650–52 (1930); Fort
Leavenworth Railroad Company v.
Lowe, 114 U.S. 525, 527 (1895). For
example, the federal government
retained exclusive jurisdiction over
Denali National Park in Alaska’s
Statehood Act. Alaska Statehood Act,
Public Law 85–508, 72 Stat. 339 (1958).
The EPA’s 1971 certification
regulations identified circumstances
where the Administrator certifies
instead of a State, Tribe, or interstate
authority, and limited the
Administrator’s certification to
certifying that a potential discharge
‘‘will not violate applicable water
quality standards.’’ 40 CFR 121.21.
However, this language reflects the
language of section 21(b) of the FWPCA
(1970) and is not consistent with the
statutory language of section 401(a),
which requires authorities to certify that
the potential discharge will comply
with the applicable provisions of CWA
sections 301, 302, 303, 306, and 307. In
this final rule, the Agency is
modernizing and clarifying its
regulations by finalizing the following
text in section 121.13(a):
Certification by the Administrator that the
discharge from a proposed project will
comply with water quality requirements is
required where no state, tribe, or interstate
agency has authority to give such a
certification.
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In circumstances where the EPA is the
certifying authority and the water body
impacted by the proposed discharge
does not have any applicable water
quality standards, the EPA’s 1971
certification regulations provided the
EPA with an advisory role. 40 CFR
121.24. The statute does not explicitly
provide for this advisory role, and
therefore, this final rule does not
include a similar provision. However,
the Agency believes that the technical
advisory role provided in section 401(b)
and discussed in section III.J of this
notice is sufficient to authorize the EPA
to play an advisory role in such
circumstances. As a result, omitting this
text in the final rule is unlikely to
change the Agency’s existing practice.
33 U.S.C. 1341(b).
Commenters provided feedback on a
few general aspects of this topic. Several
commenters expressed the importance
of the Administrator’s certification
authority where a Tribe or interstate
authority lacks such authority. Some of
these commenters stressed that the EPA
has a trust obligation to protect water
quality for those Tribes that lack TAS
and a responsibility to provide Tribes
with an opportunity for meaningful
input. One commenter stated that the
EPA had not provided a list or map of
the geographic areas in which it intends
to assert certification authority and
requested that the EPA explicitly
identify all lands within its jurisdiction
and the basis for EPA’s jurisdictional
assertion.
The EPA has a statutory obligation to
act as a certifying authority, pursuant to
CWA section 401(a)(1). Separately,
pursuant to the Agency’s 1984 Indian
Policy (EPA Policy for the
Administration of Environmental
Programs on Indian Reservations, see
https://www.epa.gov/tribal/epa-policyadministration-environmentalprograms-indian-reservations-1984indian-policy), the EPA has a
responsibility to coordinate with Tribes
when making decisions and managing
environmental programs that affect
reservation lands. The EPA takes these
obligations and responsibilities
seriously. Consistent with the CWA, the
final rule directs the EPA to act as the
certifying authority on behalf of Tribes
that do not have TAS for CWA section
401. Under the final rule, the EPA does
this by determining whether the
potential discharge from a proposed
project will comply with water quality
requirements, as defined and explained
in section III.E.2.b of this notice. As
provided in section 401(a)(1) and in
section 121.7(f) of the final rule, if there
are no water quality requirements
applicable to the waters receiving the
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discharge from the proposed project, the
EPA will grant certification. The Agency
will continue to comply with the EPA
Policy on Consultation and
Coordination with Indian Tribes when
certifying on behalf of Tribes and
disagrees with commenters who
suggested that this rule would preclude
Tribes from contributing meaningful
input.
The EPA does not maintain a national
map of lands for which the Agency
serves as the certifying authority, as
such borders may on occasion change as
Tribes continue to annex and cede
lands. Rather, it is the duty of the
project proponent to determine the
appropriate certifying authority when
seeking a section 401 certification. The
EPA acknowledges that there may be
potential for jurisdictional overlap
between certifying authorities at certain
project sites (e.g., at the boundaries of
Tribal lands), and the Agency believes
that the requirement for project
proponents to request a pre-filing
meeting with certifying authorities will
provide an opportunity for clarifying
discussions about which agency or
organization is the proper certifying
authority.
Some commenters expressed
confusion about whether the ‘‘EPA as
the certifying authority requirements’’
in the proposed rule applied to just the
EPA, or to all certifying authorities, and
one commenter asserted that subpart D
of the proposed regulatory text should
not use the term ‘‘certifying authority’’
to define those instances in which the
EPA is taking action. The Agency
disagrees that using the term ‘‘certifying
authority’’ in subpart D of the proposed
regulatory text is unclear, as subpart D
of the proposed rule is titled
‘‘Certification by the Administrator’’
and section 121.11(c) of the proposed
rule explained that for purposes of this
subpart the Administrator is the
certifying authority. However, to avoid
any potential for confusion, the EPA has
replaced the word ‘‘certifying authority’’
with ‘‘the Administrator’’ throughout
subpart D of the final rule. As noted
above, when the EPA is the certifying
authority, it must comply with all of the
requirements in the final rule, not just
subpart D.
This final rule includes two sets of
procedural requirements that would
apply only when the Administrator is
the certifying authority: (1) Clarified
public notice procedures, and (2)
specific timelines and requirements for
the EPA to request additional
information to support a certification
request. These requirements are
discussed below and are included in
final rule sections 121.15 and 121.14.
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The EPA also proposed a third set of
procedural requirements that would
have applied only when the
Administrator is the certifying
authority: Pre-filing meeting request
requirements. As explained in section
III.B of this notice, the EPA is finalizing
a requirement that all project
proponents, including federal agencies
when they seek certification for general
licenses or permits, submit a pre-filing
meeting request to the certifying
authority, regardless of whether the
Administrator is the certifying
authority. This requirement is now in
section 121.4 of final rule subpart B,
rather than in subpart D.
Some commenters recommended
extending all three of these sets of
proposed requirements to all certifying
authorities. Other commenters
recommended that none of the proposed
requirements should apply to all
certifying authorities. The EPA has
considered the conflicting perspectives
in these comments and has concluded
in this final rule that only the pre-filing
meeting request requirements will apply
to all certifying authorities, as described
in section III.B of this notice.
a. Public Notice Procedure
Section 401 requires a certifying
authority to provide procedures for
public notice, and a public hearing
where necessary, on a certification
request. Some courts have held that this
includes a requirement for public notice
itself. City of Tacoma, 460 F.3d at 68.
The 1971 certification regulations at 40
CFR part 121.23 described the EPA’s
procedures for public notice after
receiving a request for certification. The
EPA is updating its regulations to
provide greater clarity to project
proponents, federal agencies, and other
interested parties concerning the EPA’s
procedures for public notice when the
Administrator is the certifying
authority.
Under the final rule, when the
Administrator is the certifying
authority, the Agency will provide
appropriate public notice, within 20
days of receipt of a certification request,
to parties known to be interested. If the
EPA in its discretion determines that a
public hearing is appropriate or
necessary, the Agency will, to the extent
practicable, give all interested and
affected parties the opportunity to
present evidence or testimony at a
public hearing.
One commenter stated that the public
should be kept informed of the section
401 process and proposed project plans,
especially for large projects. Another
commenter suggested that public
participation requirements in the
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section 401 certification review process
should be expanded, which they
maintained would lead to better
identification of projects that should be
denied certification because of adverse
effects on water quality. A few
commenters disagreed with the
proposition that public notice should be
limited to parties known to be interested
and asserted that notice should be
provided to the general public. One
commenter suggested that the public
should receive a minimum of 30-days’
notice prior to a hearing, or another
timeframe tied to the date when
information is made available for public
review.
The EPA appreciates the public
commenters who provided feedback on
the public notice process for when the
EPA is the certifying authority. The
public notice and hearing process in the
final rule will ensure that the Agency
keeps the public informed about the
section 401 certification process and
proposed project plans. The proposed
rule included a list of potentially
interested parties, such as Tribal, State,
county, and municipal authorities,
heads of State agencies responsible for
water quality, adjacent property owners,
and conservation organizations. To
avoid artificially or unintentionally
narrowing the universe of potentially
interested parties, this list is not
included in the final rule. The
procedures in the final rule, including
providing notice to interested parties,
will provide sufficient public notice, as
required in section 401, and will
provide the public with an opportunity
to inform the EPA’s certification
decision through public comments.
Under the final rule, the Agency may
also, at its discretion, determine
whether a public hearing is appropriate
and necessary. In such cases, all
interested and affected parties would be
given the opportunity to present
evidence or testimony at a public
hearing. The Agency is not prescribing
a single timeframe for the length of
public notice under the final rule. The
appropriate timeframe for notice and
comment is more appropriately
determined on a case-by-case basis,
considering project-specific
characteristics as well as the length of
the established reasonable period of
time. In general, the EPA anticipates
that public notices will provide for a 30day comment period; however,
comment periods as short as 15 days or
as long as 60 days may be warranted in
some cases, based on the nature of the
project and the reasonable period of
time. The public hearing may be
conducted in-person, or remotely
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42271
(through telephone, online, or other
virtual platforms), as deemed
appropriate by the Agency.
b. Requests for Additional Information
The definition of a certification
request in this final rule identifies the
information that project proponents are
required to provide to certifying
authorities when they submit a
certification request. However, in some
cases, the EPA may conclude that
additional information is necessary to
determine that the potential discharge
will comply with water quality
requirements (as defined at section
121.1(n) of the final rule). Section 401
does not expressly address the issue of
whether and under what circumstances
a certifying authority may request
additional information to review and act
on a certification request. The EPA
concluded that it is reasonable and
consistent with the CWA’s statutory
framework that when the Administrator
is the certifying authority, the Agency
be afforded the opportunity to seek
additional information necessary to do
its job. However, consistent with the
statute’s firm timeline to act on a
certification request, it is also
reasonable to assume that Congress
intended some appropriate limits be
placed on the timing and nature of such
requests. This final rule fills the
statutory gap and provides a structure
for the Administrator as the certifying
authority to request additional
information and for project proponents
to timely respond. Consistent with the
proposal, this final rule includes
procedural requirements and
timeframes for action that will provide
transparency and regulatory certainty
for the Agency and project proponents.
However, in response to public
comments and to increase clarity, the
Agency has provided enhancements to
the final rule text.
Some commenters stated that the
procedures proposed for when the EPA
is the certifying authority would inhibit
the EPA from seeking additional
information on water quality effects
relevant to making a certification
decision. Some of these commenters
stated that this would lead to
unnecessary denials of certification
where, had better information been
developed, a certification may have
been granted. The Agency disagrees
with the suggestion that the procedures
proposed for when the EPA is the
certifying authority would lead to
certification decisions based on
incomplete information. Consistent with
the proposal, the EPA must request
information within 30 days of receipt.
The final rule includes additional
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clarifications that if the EPA finds it
necessary to request additional
information, then the EPA must make
an initial request within 30 days of
receipt. Nothing in the regulation
precludes the EPA from making
additional information requests at a
later point in the process after an initial
request is made, so long as that
information can be developed by the
project proponent and considered by the
EPA within the reasonable period of
time. This final rule acknowledges that
certifying authorities like the EPA need
relevant information as early as possible
to review and act on section 401
certification requests within the
reasonable period of time. As discussed
in section III.B of this notice, the prefiling meeting request requirement
under this final rule is intended to
ensure that the EPA has an opportunity
to engage with the project proponent
early, learn about the proposed project,
and consider what, if any, additional
information might be needed from the
project proponent.
Under the final rule, if the Agency
needs additional information, an initial
request for information must be made to
the project proponent within 30 days
after the receipt of a certification
request. Additional information may
include, for example, more detail about
the contents of the potential discharge
from the proposed project or specific
information about treatment or waste
management plans or additional details
about discharges associated with the
operation of the facility. The final rule
does not preclude the Agency from
making additional requests for
information, but such requests for
information must still comply with the
requirements outlined below in this
section of the final rule preamble.
The EPA is finalizing a provision that
when the Administrator is the certifying
authority, the Agency can request only
additional information that is within the
scope of certification and is directly
related to a potential discharge from the
proposed project and its potential effect
on the receiving waters. Some
commenters supported the proposal to
limit additional information requests to
information within the scope of the
section 401 certification, while other
commenters disagreed with the
limitation. The Agency considered these
and other comments and is finalizing
this provision with minor modifications
to provide clarity and certainty when
the EPA is the certifying authority.
Several commenters stated that the
proposal would not distinguish between
complex and simple projects and noted
that the type of information needed to
develop a certification for a complex
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project, such as a 30- or 50-year FERC
license, would not be the same as that
needed for a shorter-term or simpler
project. The EPA agrees with
commenters that information needs may
differ depending on the complexity of
the proposed project and other projectspecific factors. The final rule provides
sufficient flexibility for the
Administrator to request project-specific
information to help inform the
certification decision. To ensure that the
Agency’s action remains within the
scope of certification, the EPA has
determined that any additional
information requested must be within
the scope of certification and must be
directly related to the discharge from
the proposed project and its potential
effect on receiving waters. In addition to
ensuring that the Agency acts within the
scope of certification, limiting the type
of information that the EPA may request
as the certifying authority eliminates
unnecessary and burdensome requests.
Doing so also limits EPA review of
information irrelevant to the Agency’s
decision-making process.
The EPA is also finalizing a provision
that when the Administrator is serving
as the certifying authority, the Agency
can request only additional information
that can be collected or generated
within the established reasonable period
of time. Some commenters disagreed
with this provision, and one commenter
asserted that this provision would
contravene the CWA and the statute’s
emphasis on protecting human health
and the environment. Several
commenters stated that the proposal
defers to a project proponent to
determine what information may
reasonably be developed during the
‘‘reasonable period of time,’’ because the
project proponent could claim that it
would take too long to collect or
generate the information.
The Agency disagrees with
commenters that suggested that this
provision defers to project proponents
to determine what information may be
developed during the reasonable period
of time. In most cases, it should be
objectively known whether certain
information can be generated or
collected within the reasonable period
of time. For example, a multi-year study
cannot be conducted within a 12-month
reasonable period of time. Similarly, a
180-day study cannot be conducted
within a 60-day reasonable period of
time. In the event of disputes between
the EPA and the project proponent
about whether certain new information
can be collected or generated within the
reasonable period of time, the EPA will
engage directly and in good faith with
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the project proponent to resolve the
dispute.
This final rule is also intended to
address issues that have caused delays
in certifications and project
development and that have resulted in
protracted litigation. Although these
provisions apply only when the EPA is
the certifying authority, they may serve
as models for other certifying
authorities. For example, the Agency is
aware that some certifying authorities
have requested ‘‘additional
information’’ in the form of multi-year
environmental investigations and
studies, including completion of a
NEPA review, before the authority
would even begin review of the
certification request.62 Consistent with
the plain language of section 401, under
this final rule, when the Administrator
is acting as the certifying authority, such
requests from the EPA would not be
authorized because they would extend
the statutory reasonable period of time,
which is not to exceed one year. This
final rule provides clarity that, while
additional information requests may be
a necessary part of the certification
process, such requests may not result in
extending the period of time beyond
which the CWA requires the Agency to
act.
Under this final rule, when the
Administrator is acting as the certifying
authority, in any request for additional
information, the EPA must include a
deadline for the project proponent to
respond. The deadline must allow
sufficient time for the Agency to review
62 Some stakeholders have suggested that it may
be challenging for a state to act on a certification
request without the benefit of review under NEPA
or a similar state authority. See, e.g., Cal. Pub. Res.
Code Section 21000 et seq.; Wash. Rev. Code
Section 43.21C.150. Consistent with the EPA’s 2019
Guidance, the EPA recommends that certifying
authorities do not need to delay action on a
certification request until a NEPA review is
complete. The environmental review required by
NEPA has a broader scope than that required by
section 401. For example, the NEPA review
evaluates potential impacts to all environmental
media, as well as potential impacts from alternative
proposals that may not be the subject of a federal
license or permit application. By comparison, a
section 401 certification review is far more narrow
and is focused on assessing potential water quality
impacts from the proposed federally licensed or
permitted project. Additionally, many NEPA
reviews have taken more than one year to complete.
Waiting for a NEPA process to conclude may result
in waiver of the certification requirement for failure
to act within a reasonable period of time. To the
extent that State or Tribal implementing regulations
may have required a NEPA review to be completed
as part of a section 401 certification review, the EPA
encourages certifying authorities to update those
regulations to incorporate deadlines consistent with
the reasonable period of time established under the
CWA, or to decouple the NEPA review from the
section 401 process, so as to ensure timely action
on section 401 certification requests and to avoid
waiver by the certifying authority.
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the additional information once it is
received, and to act on the certification
request within the established
reasonable period of time.
Many commenters asserted that the
proposed rule would not require project
proponents to timely respond to
requests for additional information.
Some commenters requested that the
EPA clearly state that failure by the
project proponent to complete a section
401 certification request or provide
requested additional information within
a specified time period should be
grounds for denial of certification.
The Agency disagrees with the
suggestion that the project proponent
would not be required to timely respond
to requests for additional information.
Under the final rule, when the
Administrator is the certifying
authority, project proponents must
submit requested information by the
EPA’s deadline. The Agency has
clarified in section 121.14(e) that a
project proponent’s failure to provide
additional information does not prevent
the Administrator from taking action on
a certification request. If the project
proponent fails to submit the requested
information, the Agency may conclude
that it does not have sufficient
information to certify that a potential
discharge will comply with applicable
water quality requirements and may
therefore deny the certification request.
The EPA may also use its expertise to
evaluate the potential risk associated
with the remaining information or data
gap and to consider granting
certification within the reasonable
period of time with conditions to
address those potential risks. The EPA
expects that when the Administrator is
the certifying authority, these
procedures will provide clarity and
regulatory certainty to the EPA and
project proponents. The EPA notes that
States and Tribes may choose to adopt
similar provisions to ensure that all
certifying authorities are working
effectively and in good faith to act on
certification requests within the
reasonable period of time, and that
denials based on a lack of information
are not done simply for administrative
purposes but because additional
information is needed to assure that the
discharge from the proposed project will
comply with water quality requirements
and the lack of information cannot be
addressed by appropriate certification
conditions. The EPA further notes that
under the proposal and this final rule,
certifying authorities are not obligated
to act on incomplete certification
requests. If a certification request is not
complete as required by this final rule,
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the reasonable period of time does not
begin.
I. Determination of Effect on
Neighboring Jurisdictions
1. What is the Agency finalizing?
Consistent with the proposal, under
the final rule, if the EPA in its discretion
determines that a neighboring
jurisdiction may be affected by a
discharge from a federally licensed or
permitted project, the EPA must notify
the affected jurisdiction, the certifying
authority, and the federal agency within
30 days of receiving the notice of the
certification from the federal agency.
The final rule includes certain
enhancements to the proposed rule to
increase clarity and regulatory certainty,
as explained below in this section of the
final rule preamble.
2. Summary of Final Rule Rationale and
Public Comment
Section 401(a)(2) requires federal
agencies to immediately notify the EPA
when a certification is issued by a
certifying authority for a federal
licensing or permitting application.
Section 401(a)(2) also provides a
mechanism for the EPA to notify States
and authorized Tribes where the EPA
has determined the discharge from a
proposed federally licensed or
permitted project subject to section 401
may affect the quality of their waters.
The EPA’s 1971 certification regulations
established procedural requirements for
this process but required updating to
align with CWA section 401 and to
establish additional clarity. The EPA
recognizes that federal agencies may
have different processes to satisfy this
requirement and will continue to work
with these agencies to ensure that the
Agency is notified of all certifications.
The final rule does not contain a
standardized process for federal
agencies to immediately notify the EPA
when certifications are issued. The EPA
expects federal agencies to develop
notification processes as they update
their certification regulations in
accordance with the Executive Order.
The final rule provides flexibility for
federal agencies to develop processes
and procedures that work best within
their licensing or permitting programs.
Additionally, the Agency has made
minor, non-substantive modifications to
the regulatory text at section 121.12(a)
to clarify that the federal agency’s
statutory obligation to notify the EPA is
triggered when the federal agency
receives a federal license or permit
application and the related certification.
The text of section 401(a)(2) provides
that the federal agency must
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‘‘immediately’’ notify the EPA of such
application and certification. To aid in
clarity and implementation, the Agency
reasonably interprets ‘‘immediately’’ to
mean within five days of the Federal
agency’s receiving notice of the
certification. 33 U.S.C. 1341(a)(2). The
EPA believes that, in the context of
section 401(a)(2), five days is a
reasonable interpretation of the
statutory term ‘‘immediately.’’ The
federal agency needs some amount of
time to process receipt of the license
application and certification from the
project proponent or certifying
authority, review the received materials
(which might be substantial), and then
transmit notice to the appropriate EPA
office. Allowing for five days is a
prompt yet reasonable period of time to
complete this process. Moreover, unlike
emergency response or notifications
provisions in environmental statutes,
the provisions in CWA 401 governing
certifications do not appear to require
an emergency response that might—in
other contexts—justify interpreting
‘‘immediately’’ to require a shorter
period of time to act. As provided in
section 121.9(c) of the final rule, the
federal agency must provide a separate
written notification of any waiver
determination; this notification need not
occur prior to transmitting the
certification to EPA under section
121.12(a) of the final rule.
This final rule affirms the EPA’s
interpretation that section 401(a)(2)
establishes authority for the Agency to
determine in its discretion whether the
discharge from a certified project may
affect the water quality in a neighboring
jurisdiction. One public commenter
agreed with the EPA’s interpretation
and discretion concerning the
determination whether a project may
affect downstream States under CWA
section 401(a)(2). Other commenters
stated that even if the EPA’s discretion
is supported by the language of the
CWA, the unbounded scope of the
discretion is not consistent with the
statute and would not provide
accountability to neighboring States, the
project proponent, or the public without
additional clarification. Some
commenters stated that the EPA should
provide notice to neighboring
jurisdictions in every instance, thereby
allowing neighboring jurisdictions who
are best situated to understand their
own water quality concerns to make a
determination as to whether there
would be an effect on water quality.
Some commenters stated that the rule
should set forth specific factors that the
EPA would consider in making a
determination or that the EPA’s
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determination should be made in
consultation with neighboring
jurisdictions. Other commenters
requested that the EPA develop
regulations or guidance that would
explain when the EPA would exercise
its authority to notify downstream
jurisdictions.
The EPA appreciates these comments
and recognizes the desire for more
prescriptive and specific provisions
concerning the determination of
potential effects on neighboring
jurisdictions. As a general matter, the
EPA intends to use its technical
expertise from administering the CWA
over nearly fifty years to evaluate
whether a certified project may affect a
neighboring jurisdiction. At this time,
the EPA is not establishing specific
provisions in the final rule, but the EPA
may in the future take action to further
clarify this provision via either
additional rulemaking or guidance.
The final rule modifies the EPA’s
1971 certification regulations to mirror
the CWA in describing the EPA’s
procedural duties regarding neighboring
jurisdictions. The statute provides that,
following notice of a section 401
certification, the Administrator shall
within 30 days notify a potentially
affected downstream State or authorized
Tribe ‘‘[w]henever such a discharge may
affect, as determined by the
Administrator, the quality of the waters
of any other State.’’ 33 U.S.C. 1341(a)(2)
(emphasis added). Because the EPA’s
duty to notify is triggered only when the
EPA has made a determination that a
discharge ‘‘may affect’’ a downstream
State or Tribe, the section 401(a)(2)
notification requirement is contingent. It
is not a duty that applies to the EPA
with respect to all certifications, rather
it applies where—exercising its
discretion—the EPA has determined
that the certified discharge ‘‘may affect’’
a neighboring jurisdiction’s waters. This
provision is being finalized with minor
modifications to increase clarity
regarding the EPA’s discretionary
determination. The Agency has made
minor, non-substantive modifications to
the regulatory text at section 121.12(b)
to clarify that the 30-day review period
is triggered after the Administrator
receives notice from the federal agency.
The EPA is also clarifying the section
401(a)(2) notification process in this
final rule, as such procedures were not
described in sufficient detail in the 1971
certification regulations. If, as described
above, the EPA determines that a
neighboring jurisdiction may be affected
by a certified discharge from a federally
licensed or permitted project, the EPA
must notify the affected jurisdiction,
certifying authority, federal agency, and
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project proponent within 30 days of
receiving the notice that certification
was issued for a proposed project. If the
Agency does not provide the required
notification within 30 days of receiving
notification from a federal agency, the
federal agency may resume processing
the federal license or permit. The EPA
need not wait the full 30 days, but may
notify the federal agency at any time so
that it may continue processing the
license or permit.
Some public commenters requested
changes to the proposed procedures,
such as different timelines for
neighboring jurisdictions to make a
decision. One commenter requested that
timelines be flexible and incorporate the
same factors that the federal agencies
would consider for determining the
reasonable period of time. Other
commenters stated that neighboring
jurisdictions should be able to request
additional information to make a
determination. The EPA is finalizing
notification procedures substantively as
proposed, because they are consistent
with the text of section 401(a)(2).
The final rule also provides a
predictable framework for
determinations by neighboring
jurisdictions. The final rule requires that
the EPA’s notification to neighboring
jurisdictions be in writing, dated, and
state that the neighboring jurisdiction
has 60 days to notify the EPA and the
federal agency, in writing, whether or
not the discharge will violate any of its
water quality requirements (as defined
at section 121.1(n) of the final rule) and
whether the jurisdiction will object to
the issuance of the federal license or
permit and request a public hearing
from the federal agency. The final rule
also requires that, if the neighboring
jurisdiction requests a hearing, the
federal agency must forward the hearing
notice to the EPA at least 30 days before
the hearing takes place. The public
hearing may be conducted in-person or
remotely through telephone, online, or
other virtual platforms, as deemed
appropriate by the Agency. Under the
final rule, the EPA must provide its
recommendations on the federal license
or permit at the hearing. After
considering the EPA’s and the
neighboring jurisdiction’s input, the
federal agency is required to condition
the license or permit as necessary to
assure that the discharge from the
certified project will comply with the
neighboring jurisdiction’s water quality
requirements, as the term is defined in
the final rule. Consistent with section
401(a)(2), under the final rule, if
additional conditions cannot assure that
the discharge from the certified project
will comply with the neighboring
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jurisdiction’s water quality
requirements, the federal agency cannot
issue the license or permit. The final
rule further clarifies that the federal
agency may not issue the license or
permit pending the conclusion of the
determination of effects on a
neighboring jurisdiction.
One commenter asserted that the EPA
should consider all Tribes as
neighboring jurisdictions for purposes
of section 401(a)(2), irrespective of
whether they have TAS. The commenter
argued that limiting the application of
the neighboring jurisdiction provision to
those Tribes with TAS would subject
Tribes without TAS to a lesser standard
of review and ultimately resource
protection. The Agency has determined
that only States or authorized Tribes are
considered to be ‘‘neighboring
jurisdictions’’ under the final rule. As
explained in section II.F.1 of this notice,
section 518 of the CWA authorizes the
EPA to treat eligible Tribes with
reservations ‘‘as a State’’ within the
meaning of that provision, but the CWA
does not authorize the EPA to treat all
Tribes in that manner. 33 U.S.C.
1377(e).63
J. The EPA’s Role in Review and Advice
The final rule reaffirms the EPA’s
important role in providing advice and
technical assistance as requested
through the certification process. The
final rule provision in section 121.16
has been modified from the proposal to
better align with the text of section 401
and the scope of certification in this
final rule.
As described in the proposal, the
EPA’s 1971 regulations limited the
provision of technical assistance to
concerns regarding ‘‘water quality
standards.’’ To be consistent with the
1972 amendments, the final rule
replaces this term with the broader
‘‘water quality requirements’’ which, as
defined in the final rule, includes water
quality standards. The proposed rule
included a provision specifically
authorizing a certifying authority,
federal agency, or project proponent to
request assistance from EPA to evaluate
whether a certification condition was
intended to address water quality effects
63 This final rule does not change the regulations
under which federally recognized Indian Tribes
obtain authorization to be treated in the same
manner as states. 40 CFR 131.4(c) expressly states
that where the EPA determines that a Tribe is
eligible for TAS for purposes of water quality
standards, the Tribe is likewise eligible to the same
extent as a State for purposes of section 401
certifications. The regulations also establish criteria,
application requirements, and application
processing procedures for Tribes to obtain TAS
authorization for purposes of CWA water quality
standards. See 40 CFR 131.8.
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from the discharge. The Agency is not
finalizing that provision because it
concluded that the final rule section
121.16 is broad enough to capture all
technical advice that may be requested
by certifying authorities, federal
agencies, and project proponents.
Some commenters expressed concern
that the proposed rule’s description of
the EPA’s review and advice role goes
beyond the authority provided in
section 401(b). Other commenters
supported the EPA’s providing
assistance upon request. Other
commenters asked whether the EPA
would be the ‘‘decision maker’’ or a
party to litigation challenging a
certification if a project proponent,
certifying authority, or federal agency
relied on the EPA’s technical advice at
any point during the certification
process.
Under the final rule, federal agencies,
certifying authorities, and project
proponents may seek the EPA’s
technical expertise at any point during
the section 401 water quality
certification process. The Agency
disagrees with commenters who
asserted that the proposed regulation
exceeded the authority provided in
section 401(b). The Agency is not
asserting independent or expanded
authority in this role, but rather will
provide assistance upon request. The
legislative history for the Act provides
further support for the Agency’s
technical role under section 401(b). See
H.R. Rep. No. 92–911, at 124 (1972)
(‘‘The Administrator may perform
services of a technical nature, such as
furnishing information or commenting
on methods to comply with limitations,
standards, regulations, requirements or
criteria, but only upon request of a
State, interstate agency or Federal
agency.’’). Under the final rule section
121.16, a certifying authority, federal
agency, or project proponent may
request assistance from the
Administrator to provide relevant
information and assistance regarding the
meaning of, content of, application of,
and methods to comply with water
quality requirements. This provision of
the final rule is not intended to give the
EPA authority to make certification
decisions, or to independently review
certifications or certification requests.
Nor does this provision authorize the
EPA to interpret a State or Tribal water
quality standard or designated use in a
manner that is inconsistent with the
State or Tribe’s interpretation or
implementation of that standard. This
provision is merely intended to
implement a provision of the statute
that has been in effect since 1972. The
provision of technical advice to project
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proponents, certifying authorities, or
federal agencies is not a final agency
action, and it does not render the EPA
a decision maker for purposes of the
certification action or subsequent action
of the federal agency.
K. Enforcement
1. What is the Agency finalizing?
Under the final rule, the federal
agency issuing the applicable federal
license or permit is responsible for
enforcing certification conditions that
are incorporated into a federal license or
permit. Once the certifying authority
acts on a certification request, the CWA
does not provide independent authority
for certifying authorities to enforce the
conditions that are included in a
certification under federal law. Under
the final rule, the EPA is interpreting
the CWA to clarify that this enforcement
role is reserved to the federal agency
issuing the federal license or permit.
Consistent with section 401, the final
rule also expands the post-certification
inspection function from the 1971
certification regulations to all certifying
authorities. Under the final rule,
certifying authorities are provided the
opportunity to inspect the facility or
activity prior to initial operations, in
order to determine whether the
discharge from the certified project will
violate the certification. After an
inspection, the certifying authority is
required to notify the project proponent
and federal agency in writing if it
determines that the discharge from the
certified project will violate the
certification. The certifying authority is
also required to specify
recommendations concerning measures
that may be necessary to bring the
certified project into compliance with
the certification.
2. Summary of Final Rule Rationale and
Public Comment
The CWA expressly notes that all
certification conditions ‘‘shall become a
condition on any Federal license or
permit’’ subject to section 401.33 U.S.C.
1341(d). The EPA’s 1971 certification
regulations did not discuss the federal
agency’s responsibility to enforce
certification conditions after they are
incorporated into the permit. Under the
final rule and consistent with the Act,
the federal agency is responsible for
enforcing certification conditions that
are incorporated into a federal license or
permit. In limited circumstances, the
EPA’s 1971 certification regulations
required the Agency to provide notice of
a violation and to allow six months for
a project proponent to return to
compliance before pursuing further
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enforcement. See 40 CFR 121.25. The
EPA finds no support for that provision
in CWA section 401, and such a
provision is not included in the final
rule.
a. Federal Agency Enforcement of
Certification Conditions
The CWA does not provide an
independent regulatory enforcement
role for certifying authorities. The role
of the certifying authority is to review
the proposed project and to either grant
certification, grant certification with
conditions, deny certification, or waive
certification. Once the certifying
authority acts on a certification request,
section 401 does not provide an
additional or ongoing role for certifying
authorities to enforce certification
conditions under federal law. Rather,
federal agencies typically have
enforcement authority in accordance
with the enabling statutes that provide
such agencies with permitting and
licensing authority.
Many commenters agreed with the
proposal that the enforcement of section
401 conditions in a federal license or
permit is the sole responsibility of the
federal agency that issues the license or
permit. A few commenters asserted that
nothing in the CWA provides States
with the authority to enforce or
implement conditions of a section 401
certification. Another commenter stated
that if certification conditions were
enforceable independent of the federal
license or permit, there would have
been no need for Congress to require
conditions to become part of the federal
license or permit under section 401(d).
Another commenter requested that the
final rule unequivocally provide that
section 401 certification conditions may
be enforced only after they are
incorporated into the federal license or
permit and only in the same manner as
the other conditions of the federal
license or permit, and that such
conditions may not be independently
enforced pursuant to the CWA. As
reflected in the final rule regulatory text,
the EPA generally agrees with these
commenters.
Other commenters asserted that the
rule should allow States and Tribes to
independently enforce their section 401
certification conditions. Some
commenters asserted that providing
federal agencies with exclusive
authority to enforce section 401
certification conditions, and limiting
State enforcement, is contrary to the
language of the CWA, legislative history,
and case law, citing Deschutes River
Alliance v. PGE Co., 249 F.Supp.3d
1182 (D. Or. 2017); S.D. Warren, 547
U.S. at 386. Another commenter
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asserted that the Agency failed to cite
any legal authority for prohibiting States
from enforcing their own certifications.
One commenter asserted that section
401 does not override State enforcement
authority under State law, in those
States that have provided for it. A few
commenters referenced the savings
clause in section 510 as explicitly
preserving State authority to enforce
State laws and requirements and
suggested that reservation includes
enforcement of section 401
certifications.
The EPA has considered these
comments and has concluded that some
of them reflect a misunderstanding of
the proposed rule. The Agency
recognizes that some States have
enacted State laws authorizing State
enforcement of certifications or
certification conditions in State court.
State enforcement under State
authorities may be lawful where State
authority is not preempted by federal
law.64 Nothing in this final rule
prohibits States from exercising their
enforcement authority under enacted
State laws; however, the legality of such
enforcement actions may be subject to
review by a court of competent
jurisdiction. Therefore, today’s rule does
not implicate, let alone violate, the
reservation of state authority contained
in section 510 of the Act.
Rather, the EPA concludes that
section 401 of the CWA does not
authorize States and Tribes to
independently enforce section 401
certification conditions under federal
law. The CWA expressly authorizes the
certifying authority to review the
proposed project and to either grant
certification, grant certification with
conditions, deny certification, or waive
certification. Once the certifying
authority acts on a certification request,
the CWA does not authorize certifying
authorities to enforce certification
conditions under federal law; rather, a
federal agency may enforce its license or
permit, including section 401
certification conditions. The EPA has
reviewed and considered legislative
history from the 1972 amendments and
concludes that, on this point, the
64 Examples of situations where State authority
would be preempted by federal law include FERC’s
sole authority to approve the construction of
interstate natural gas pipelines and to regulate the
transportation of natural gas for resale on these
interstate pipelines under the Natural Gas Act (5
U.S.C. 717 et seq.; see also Schneidewind v. ANR
Pipeline Co., 485 U.S. 293 (1988); Dominion
Transmission, Inc. v. Summers, 723 F.3d 238 (D.C.
Cir. 2013)) and FERC’s exclusive authority to
license nonfederal hydropower projects under the
Federal Power Act (16 U.S.C. 797(e), 817(1); see
also California v. Federal Energy Regulatory
Comm’n, 495 U.S. 490 (1990); First Iowa HydroElectric Cooperative v. FPC, 328 U.S. 152 (1946)).
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legislative history is either silent or
lacks a definitive statement of
congressional intent.65 The Agency
agrees with the commenter who noted
that if certification conditions were
enforceable independent of the federal
license or permit, there would have
been no need for Congress to require
conditions to be included in the federal
license or permit under section 401(d).
A few commenters asserted that
without State enforcement, project
proponents will be less likely to comply
with the State conditions, to the
detriment of the environment. Some
commenters asserted that the certifying
authority, not the federal agency, often
has the technical knowledge,
organizational structure, and staffing
capacity to conduct inspections and to
enforce section 401 certification
conditions. One commenter noted that
the proposal creates regulatory
uncertainty if States cannot enforce
certifications and conditions. Other
commenters suggested that enforcement
of section 401 certifications should be
done jointly by federal agencies and
certifying authorities. One commenter
asserted that the proposed rule should
be revised to allow federal agencies and
States to determine their appropriate
roles in enforcing water quality
certifications. Another commenter
asserted that federal agencies are not
precluded from consulting with
certifying authorities if additional
substantive expertise is needed, but
argued that it was important for project
proponents to know to whom they are
accountable and to eliminate the
potential for any conflicting obligations.
The Agency disagrees with
commenters’ suggestion that water
quality will be compromised if States
cannot independently enforce
certifications under federal law. The
federal licensing or permitting agency
remains responsible for exercising its
65 Most of the legislative history simply repeats
the language from section 401 that certification
conditions ‘‘will become a condition on any Federal
license or permit’’ (H.R. Rep. No. 92–911, at 124
(1972) or that the certification becomes an
‘‘enforceable condition on the Federal license or
permit’’ (S. Rep. No. 92–414, at 69 (1971)).
However, the Senate’s consideration of the
Conference report states that ‘‘If a State establishes
more stringent limitations and/or time schedules
pursuant to Section 303, they should be set forth
in a certification under Section 401. Of course, any
more stringent requirements imposed by a State
pursuant to this section shall be enforced by the
Administrator.’’ Sen. Consideration of Conf. Rep.
No. 92–1236 (Exhibit 1), at 171 (1972) (emphasis
added) As discussed in sections III.H, III.I, and III.J
of this notice, the text of section 401 provides
specific roles for EPA as a certifying authority,
protecting waters in neighboring jurisdictions, and
providing technical assistance, but section 401 does
not provide an enforcement role for EPA when it
is not the federal licensing or permitting agency.
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enforcement authority for all provisions
of the federally issued license or permit,
including any conditions incorporated
from a certification. The Agency also
disagrees with commenters who
requested that the EPA include
authority in the final rule for States and
Tribes to independently enforce or to
jointly enforce certification conditions.
The EPA cannot create via rulemaking
federal or state enforcement authority
that is not expressly authorized in the
statute. However, the EPA always
encourages coordination and
cooperation between certifying
authorities and federal agencies,
particularly if such coordination can
result in greater accountability and
compliance with certification
conditions. This final rule is intended to
promote efficient permitting processes
and regulatory certainty by clarifying
that section 401 does not provide an
additional or ongoing role for certifying
authorities to enforce certification
conditions under federal law. This final
rule provides clarification on who holds
project proponents accountable under
federal law and eliminates any
confusion about which entity is
responsible for enforcing specific
certification conditions in the federal
license or permit. This final rule also
eliminates the possibility of inconsistent
interpretation and enforcement of the
certification conditions in the federal
license or permit, increasing the
likelihood that project proponents will
be able to comply with the certification
conditions. Additionally, as discussed
above, the final rule does not preclude
States from pursuing enforcement
actions where authorized under State
law and not preempted by other federal
statutory provisions. Importantly, the
Agency agrees that federal agencies are
not precluded from consulting with
certifying authorities or the EPA when
exercising their enforcement authority
under CWA section 401.
The Agency received feedback during
stakeholder outreach, both pre-proposal
and post-proposal, expressing concern
that federal agencies may not
consistently or sufficiently enforce
certification conditions incorporated
into their federal licenses or permits.
The Agency has also received feedback
from other federal agencies noting the
potential challenge with enforcing
certain certification conditions,
particularly those that are ill-defined,
that lack clarity, or that are beyond the
scope of certification as outlined in
section III.E of this notice. The Agency
anticipates the clarity provided in this
final rule with respect to the scope of a
certification, the scope of the conditions
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of a certification (see section III.E.2.c of
this notice), and the requirements for a
certification with conditions (see
section III.G.2.b of this notice) will
provide federal agencies with sufficient
information to enable them to
effectively enforce certification
conditions.
Enforcement plays an essential role in
maintaining robust compliance with the
CWA, and a critical part of any strong
enforcement program is the appropriate
use of enforcement discretion. See, e.g.,
Heckler v. Chaney, 470 U.S. 821, 831
(1985). Enforcement programs exercise
discretion and make careful and
informed choices about where to
conduct investigations, identifying the
most serious violations and reserving
limited enforcement resources for the
cases that can make the most difference.
See Sierra Club v. Whitman, 268 F.3d
898, 902–03 (9th Cir. 2001). It is
important for enforcement programs to
retain their enforcement discretion
because federal agencies are in the best
position to (1) determine whether a
particular action is likely to succeed, (2)
assess whether the action fits agency
policies, and (3) determine whether
there are enough agency resources to
undertake and effectively prosecute the
action, taking account of all other
agency constraints and priorities. See
Heckler, 470 U.S. at 831.
A couple of commenters asserted that
section 401 is not included in the CWA
enforcement provision, CWA section
309, and that the CWA citizen suit
provision, CWA section 505, does not
authorize a citizen suit to enforce
certification conditions. One commenter
noted that although Dombeck held that
a citizen suit could be used to challenge
the issuance of a permit without a
certification, the court did not make
reference to the enforcement of
certification conditions. A few other
commenters asserted that enforcement
of section 401 certification conditions is
authorized under the CWA citizen suit
provision, citing CWA section 505,
Oregon Natural Desert Ass’n v.
Dombeck, 172 F.3d 1092 (9th Cir. 1998),
and Deschutes River Alliance v. PGE
Co., 249 F.Supp.3d 1182 (D. Or. 2017).
The EPA considered these public
comments and the varying
interpretations described above and is
declining to adopt a particular
interpretation in this final rule. The EPA
did not propose an interpretation of the
CWA section 505 citizen suit provision
and did not solicit comment on its
applicability to section 401
certifications or certification conditions,
and EPA is therefore declining to
finalize an interpretation of these
provisions in this final rule.
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Section 401(a)(4) and the EPA’s 1971
certification regulations at 40 CFR part
121.26 through 121.28 describe
circumstances in which the certifying
authority may inspect a facility that has
received certification prior to
operation 66 and may notify the federal
agency so that the agency may
determine whether the facility will
violate applicable water quality
requirements. 33 U.S.C. 1341(a)(4). The
Agency is updating these regulations to
reflect the scope of certification review
under the modern CWA. See section
121.11 of the final rule and section III.E
of this notice. The Agency has made
minor, non-substantive modifications to
section 121.11(a) from proposal to
match the language of section 121.11(b)
and section 401(a)(4). Additionally,
consistent with section 401, the EPA is
expanding this inspection function to
all certifying authorities and is
clarifying the process by which
certifying authorities should notify the
federal agency and project proponent of
any concerns arising from inspections.
Consistent with section 401, this final
rule provides certifying authorities the
opportunity to inspect the facility or
activity prior to initial operation in
order to determine whether the
discharge from the certified project will
violate the certification. The EPA notes
that section 401(a)(4) authorizes
certifying authorities to ‘‘review the
manner in which the facility or activity
shall be operated . . . ’’ for purposes of
assuring that water quality requirements
will not be violated. 33 U.S.C.
1341(a)(4). The final rule uses the terms
‘‘inspect’’ and ‘‘inspection’’ because
these are well understood terms that
provide additional clarity in the final
rule. The Agency does not expect these
terms to change the meaning of section
401(a)(4), as implemented through
section 121.11 of the final rule. After an
inspection, the certifying authority is
required to notify the project proponent
and the federal agency responsible for
issuing the federal license or permit in
writing if the discharge from the
certified project will violate the
certification. The certifying authority is
also required to specify
recommendations concerning measures
that may be necessary to bring the
certified project into compliance with
the certification.
Some commenters asserted that a
certifying authority’s compliance
assurance and enforcement role should
not be limited to one pre-operational
inspection and asserted that the
certifying authority must be allowed to
66 The Agency notes that operation may include
implementation of a certified project.
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inspect the project both before and
during operation in order to ensure the
project is compliant with any
certification conditions. One commenter
explained that the certifying authority
would not always be able to determine
compliance with all conditions of the
certification prior to operation. Another
commenter asserted that it would be
unacceptable for the State (rather than
the project proponent) to identify the
measures necessary to correct identified
violations of certification conditions.
Another commenter stated that it is
unclear whether States have jurisdiction
over post-license maintenance and
repair projects that have an impact on
water quality.
The EPA disagrees with commenters
who suggested that the final rule should
expand the inspection and enforcement
authority provided in section 401. As
finalized, this rule is consistent with the
breadth of inspection and enforcement
authority provided in section 401. This
provision in the final rule is intended to
allow the certifying authority the
opportunity to inspect the facility or
activity to determine whether the
discharge will violate the certification
issued. This final rule clarifies that after
commencement of operations,
enforcement of certification conditions
incorporated into the federal license or
permit is reserved to the federal agency
that issued the federal license or permit
under federal law. Accordingly, after
commencement of operations, all
inspections and enforcement will be
conducted by the federal agencies. As
discussed above, federal agencies are
not precluded from consulting with
certifying authorities or the EPA when
exercising their enforcement authority
under section 401.
b. Reasonable Assurance vs. Will
Comply
The proposed rule replaced the
language from the existing regulations
requiring a ‘‘reasonable assurance that
the proposed activity will not result in
a violation of applicable water quality
standards’’ with language requiring
‘‘that a discharge from a Federally
licensed or permitted activity will
comply with water quality
requirements.’’ The Agency received
comments expressing concerns about
this proposed change. According to
these commenters, the ‘‘will comply’’
language could result in States’
including certification conditions that
are difficult or impossible to comply
with, resulting in greater noncompliance by project proponents. A
few commenters expressed concern that
‘‘will comply’’ would impose a stricter
standard on States than ‘‘reasonable
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assurance,’’ such that they would be
unable to develop conditions that
include adaptive management
provisions. These commenters
maintained that the ‘‘reasonable
assurance’’ standard currently allows for
adaptive future decision-making despite
present uncertainties. Other
commenters stated that, in some cases,
certifying authorities may be unable to
demonstrate that a proposed project will
be in compliance with water quality
requirements at all times in the future,
potentially resulting in more denials.
Another commenter stated that the
language in the final rule should
include a ‘‘reasonable assurance’’
standard that a discharge would meet
water quality requirements, rather than
the ‘‘will comply’’ standard in the
proposal. Several commenters noted
that sections 401(a)(3) and (a)(4)
retained the ‘‘reasonable assurance’’
language and asserted that Congress
inadvertently changed the language in
(a)(1) and (d). Another commenter
argued that the ambiguity throughout
401(a) and (d) suggests that the
competing provisions cannot be
harmonized based on a plain language
reading of the statute alone.
The Agency disagrees with the
suggestion that the ‘‘reasonable
assurance’’ language should be retained
in the final rule. The ‘‘reasonable
assurance’’ language in the EPA’s 1971
certification regulations was an artifact
from the pre-1972 version of section
21(b), which provided that the certifying
authority would certify ‘‘that there is
reasonable assurance . . . that such
activity will be conducted in a manner
which will not violate applicable water
quality standards.’’ Public Law 91–224,
21(b)(1), 84 Stat. 91 (1970). The Agency
acknowledges that the inclusion of the
phrase ‘‘reasonable assurance’’ in
section 401(a)(3) and (a)(4) creates some
ambiguity. The legislative history does
not explain why Congress retained the
term in sections 401(a)(3) and (a)(4) but
not in sections 401(a) and (d).
Under basic canons of statutory
construction, the EPA begins with the
presumption that Congress chose its
words intentionally. See, e.g., Stone v.
INS, 514 U.S. 386, 397 (1995) (‘‘When
Congress acts to amend a statute, we
presume it intends its amendment to
have real and substantial effect.’’). The
Agency presumes that Congress chose to
use the phrase ‘‘will comply’’ in
sections 401(a)(1) and (d), while
retaining the phrase ‘‘reasonable
assurance’’ in 401(a)(3) and (a)(4). As
such, the scope under this final rule and
the ‘‘will comply’’ language are
consistent with the 1972 CWA
amendments to section 401(a)(1) and
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(d), which require certifying authorities
to conclude that a discharge ‘‘will
comply’’ with water quality
requirements (as defined in section
121.1(n) of this final rule).
The Agency disagrees with the
suggestion that using ‘‘will comply’’
will place an impossible standard on
certifying authorities. The Agency does
not intend or believe that the statutory
language requires States to ensure that
a project will maintain strict
compliance, in every respect,
throughout its entire existence. The
inclusion of the statutory language ‘‘will
comply’’ does not require certifying
authorities to provide absolute certainty
that applicants for a federal license or
permit will never violate water quality
requirements. Indeed, future
compliance depends on many factors
besides just facility design and
operation, and it would not be
reasonable for an authority to certify
that no unknown future event could
ever result in a violation of the
certification. The use of the language
comparable to ‘‘will comply’’ is not
uncommon in CWA regulatory
programs. For example, CWA section
402 contemplates that an NPDES
permits may issue only upon a showing
that discharge ‘‘will meet’’ various
enumerated provisions. 33 U.S.C.
1342(a). This standard has not
precluded States, Tribes, or the EPA
from routinely issuing NPDES permits
for a variety of discharges; nor has it
resulted in NPDES permits that are
impossible for permittees to comply
with. The Agency concludes that use of
the statutory language ‘‘will comply’’ in
the final rule remains loyal to the words
that Congress chose when it enacted
section 401. The Agency has no
theoretical or empirical basis to
conclude that the language in the final
rule will materially change the way in
which certifying authorities, including
the EPA, process certification requests,
so long as certifying authorities act in
good faith and in accordance with CWA
section 401.
L. Modifications
1. What is the Agency finalizing?
The EPA is finalizing the rule as
proposed and is removing EPA’s
oversight role for modifications to an
existing certification. Additionally, the
final rule does not authorize or include
any procedure for certifying authorities
to modify certifications after issuance.
As discussed below, there are other
established procedures that certifying
authorities may rely on to address
modifications, should the need arise.
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2. Summary of Final Rule Rationale and
Public Comment
a. The EPA’s Role in Modifications
Section 401 does not provide an
express oversight role for the EPA with
respect to the issuance or modification
of section 401 certifications. The EPA’s
role under section 401 consists of
providing a common framework for the
program through rulemaking, providing
technical assistance under section
401(b), ensuring the protection of other
States’ waters under section 401(a)(2),
and acting as the certifying authority in
some circumstances. However, the
EPA’s 1971 certification regulations
provided the Agency an oversight role
in the unique context of modifications
to existing water quality certifications.
40 CFR 121.2(b). The final rule removes
this oversight role from the regulatory
text, as it is inconsistent with the
statute.
The Agency solicited comment
generally on the appropriate scope of
the EPA’s oversight role under section
401, and specifically whether the EPA
should play any role in oversight of
State or Tribal certifications or
modifications, and, if so, what that role
should be. The Agency received a
considerable number of public
comments on this issue, most of which
supported removing the EPA’s oversight
role for modifications to certifications.
Some commenters agreed with the
proposal that there is no statutory basis
for section 121.2(b) of the 1971
certification regulations, nor is there any
indication that Congress intended for
the EPA to have an oversight role for
modifications to certifications. Another
commenter suggested that the EPA
could follow the process described in
the proposed rule section 121.10 to meet
its obligation under section 401(a)(2)
regarding neighboring States with
respect to a modification to a section
401 certification.
The EPA agrees with commenters that
there is no statutory basis in section 401
for the Agency to have an oversight role
for modifications to certifications. The
Agency disagrees with the commenter
who asserted that it would be
appropriate to expand the EPA’s
authority provided under section
401(a)(2) to grant the Agency a more
formal oversight role. The EPA’s role
under section 401(a)(2) is plainly
limited to (1) notifying a State or
authorized Tribe if the Agency makes a
discretionary determination that a
discharge from a certified project may
affect the waters of that jurisdiction, and
(2) subsequently providing
recommendations to the federal agency
if the affected neighboring jurisdiction
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requests a hearing. See section III.I of
this notice.
b. Modifications by Certifying
Authorities
In light of the statute’s one-year time
limit for a certifying authority to act on
a section 401 certification, the EPA
solicited comment on whether and to
what extent States or Tribes should be
able to modify a previously issued
certification, either before or after the
reasonable period of time expires, before
or after the license or permit is issued,
or to correct an aspect of a certification
or its conditions if remanded or found
unlawful by a federal or State court or
administrative body.
Certain commenters were in favor of
retaining the ability for States and
Tribes to modify certifications. One
commenter asserted that other CWA
sections, such as sections 402 and 404,
also do not explicitly allow for
modifications, yet the EPA and the
Corps assume authority to modify
permits issued under those sections as
long as they follow their own processes
to do so. However, many commenters
suggested that certain parameters
should be applied to modifications,
such as restrictions on ‘‘unilateral’’
modifications and ‘‘reopener’’ clauses.
The EPA disagrees with commenters
who argued in favor of allowing
modifications to certifications. As
described throughout this final rule
preamble, section 401 certifications are
unique in that they are not subject to
ongoing enforcement by certifying
authorities or oversight by the EPA, as
section 402 and 404 permits may be.
Indeed, once a certification is issued,
the conditions therein are incorporated
into a different document, a federal
license or permit, for implementation
and enforcement. Allowing
certifications to be modified after
issuance could create significant
confusion and regulatory uncertainty
within those federal license and permit
programs.
Some commenters argued that
‘‘unilateral’’ modifications by the
certifying authority should not be
allowed, whereas other commenters
favored a broad ability for States and
Tribes to modify certifications. The
commenters who disfavored unilateral
modifications argued that it would
effectively void the maximum
reasonable period of time of one year
and would lead to economic uncertainty
for the project and possibly lengthy and
expensive litigation. One commenter
stated that unilateral modifications
should be allowed in certain
circumstances, such as before the
reasonable period of time has expired.
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Some commenters encouraged the
EPA to provide clarity on the process by
which a certification can be modified
and the timeframe for that modification,
so as to help avoid future regulatory
uncertainty and litigation. A few
commenters asked the EPA to clarify the
process by which federal agencies must
respond to any requested revisions to
certifications beyond the reasonable
period of time. As discussed in more
detail below, the final rule does not
authorize certifications to be modified
after they have been issued. Section 401
does not grant States the authority either
to unilaterally modify a certification
after it is issued or to include
‘‘reopener’’ clauses in a certification.
However, other established procedures
are available to address situations that
necessitate a modification after a
certification has been issued.
Some commenters distinguished
between modifications made within the
reasonable period of time and those
outside of that timeframe. A few of these
commenters suggested various scenarios
in which a modification should be
allowed, including scenarios in which a
court remands a certification or
condition, the project proponent wants
to correct an error, or the discharge in
the federal license or permit changes.
Another commenter asserted that State
modification of certification conditions
outside of the one-year review period
should not automatically become part of
the license or permit, citing Airport
Communities Coalition v. Graves, 280 F.
Supp. 2d 1207, 1217 (W.D. Wash. 2003).
The EPA has determined that section
401 does not provide authority for a
certifying authority to unilaterally
modify a certification, either through
certification conditions that purport to
authorize the certifying authority to
reopen the certification in the future or
through any other mechanism. The
Agency also notes that the ability to
unilaterally modify a certification after
issuance is unnecessary, because
circumstances that may necessitate
modifications often will be linked to
other actions that have established
procedures. For example, if a federal
license or permit is modified or the
underlying project is changed such that
the federal license or permit requires
modification, it may trigger the
requirement for a new certification,
depending on the federal agency’s
procedures. See, e.g., 18 CFR 5.23
(requiring project proponents to submit
a new certification request when the
project proponent submits an
application to FERC to amend an
existing hydropower license or to
amend a pending application for a
hydropower license). Similarly, if a
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42279
court vacates or remands a certification
or condition thereof, the certifying
authority may need to modify the
certification, depending on the specifics
of the court’s decision, and the federal
agency may need to modify the license
or permit accordingly. To reduce
uncertainty, federal agencies may
establish procedures in their regulations
to clarify how modifications would be
handled in these specific scenarios. For
example, the EPA’s existing regulations
regarding certification in the NPDES
program, located at 40 CFR 124.55(b),
provide procedures for modification in
certain circumstances (‘‘If there is a
change in the State law or regulation
upon which a certification is based, or
if a court of competent jurisdiction or
appropriate State board or agency stays,
vacates, or remands a certification, a
State which has issued a certification
under [section] 124.53 may issue a
modified certification or notice of
waiver and forward it to EPA.’’).
Additionally, the need to unilaterally
modify a certification to address a
change in the proposed project should
be unnecessary under this final rule. As
discussed in section III.C of this notice,
if certain elements of the proposed
project change materially after a
certification is issued, it may be
reasonable for the project proponent to
submit a new certification request. The
clock stops after a certifying authority
issues a certification decision, and
therefore the Agency disagrees with the
suggestion that modifications should be
allowed to occur after that point but
within the reasonable period of time.
The EPA requested comment on
whether EPA should expressly prohibit
certification conditions that may create
regulatory uncertainty, including
conditions that extend the effective date
of a certification beyond the reasonable
period of time and conditions that
authorize certifications to be reopened.
Some commenters opposed certification
conditions that enable a State or Tribe
to ‘‘reopen’’ or revisit the certification at
a specific time or upon certain triggering
events. A few commenters argued that
reopeners could effectively eliminate
the one-year time limit in the statute
and transform section 401’s grant of
State authority into an ongoing
regulatory role. Another commenter,
stating that reopener clauses allowing a
State or Tribe to unilaterally modify a
certification are contrary to law, noted
that a regulation prohibiting such
clauses would be consistent with
judicial precedent, citing Triska v. Dept
of Health & Envtl. Control, 355 SE2d
531, 533–34 (S.C. 1987). Other
commenters maintained that States and
Tribes should retain their authority to
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modify certifications whenever
circumstances warrant, and that no
federal agency should have authority
over conditions issued by a State or
Tribe or future modifications to those
conditions. A few commenters noted
that the broad authority granted in
section 401(d) of the CWA also provides
authority for a State or Tribe to include
a ‘‘reopener’’ clause to ensure that their
waters are protected, especially given
the long timeframes for some projects.
The EPA has considered these
comments and concludes that reopener
clauses are inconsistent with section
401. The final rule does not include an
explicit prohibition on reopener clauses
because the EPA has concluded that
such conditions are already proscribed
by section 121.6(e) of the final rule. By
including a reopener condition in a
certification, the certifying authority
intends to take an action to reconsider
or otherwise modify a previously issued
certification at some unknown point in
the future. As described in section III.F
above, the reasonable period of time to
act on a certification request begins
when a certifying authority receives the
request, and ends when the certifying
authority takes action to grant, grant
with conditions, deny, or waive. The
reasonable period of time does not
continue to run after a certification
decision is issued. A reopener
condition, if allowed under this final
rule, would effectively extend the
established reasonable period of time
into the future, potentially indefinitely.
The Agency acknowledges that projects
may change after a certification is
issued; but, as discussed above, there
are other procedures in this final rule
and in other federal agency regulations
that can address project changes that
would necessitate a new or modified
certification or federal license or permit.
Reopener conditions are not authorized
under this final rule because such
actions by the certifying authority
would modify the reasonable period of
time, contrary to section 121.6(e) of the
final rule.
As discussed above, section 401 does
not provide certifying authorities with
the authority to modify certifications
after they are issued. The Agency
disagrees with commenters who assert
that section 401(d) provides certifying
authorities with authority to include
reopener clauses as a condition on a
federal license or permit. As a general
matter, administrative agencies possess
the inherent authority to reconsider
prior decisions; 67 however, section 401
67 See e.g., Motor Vehicle Mfrs. Ass’n v. State
Farm Mut. Auto. Ins. Co., 463 U.S. 29, 42 (1983);
FCC v. Fox Television Studios, 556 U.S. 502, 514–
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provides express statutory language
(e.g., specifying the time period in
which a certifying authority must act on
a certification request or waive its right
to act; requiring certification conditions
to be incorporated into a separate
federal permit) that displaces the
general principle, and thus Congress has
precluded the certifying authority from
reconsidering or modifying a
certification. For the reasons explained
above, unilateral modifications,
including certification conditions that
would reopen the certification in the
future, are not authorized in section
401.
The Agency also disagrees with
commenters that assert that the federal
agency should not have authority over
certification conditions or
modifications. As discussed in section
III.G.2.b of this notice, consistent with
section 401(d), certification conditions
that meet the requirements of final rule
section 121.7(d) shall be incorporated
into the federal license or permit.
Accordingly, the federal agency is the
appropriate party to address any
modifications to the license or permit,
including those certification conditions
incorporated into the license or permit.
M. General Licenses and Permits
1. What is the Agency finalizing?
In response to comments received, the
Agency is finalizing several provisions
specific for certifications for the
issuance of general licenses or permits.
Section 121.5(c) of the final rule
specifically defines elements of a
‘‘certification request’’ that must be
submitted for the issuance of general
licenses or permits. The Agency is also
including additional provisions in
section 121.7 of the final rule to address
certification conditions and denials for
general licenses and permits.
This final rule preamble also reaffirms
that a federal agency seeking
certification for a general license or
permit must comply with all provisions
of this final rule, including the pre-filing
meeting request requirement in section
121.4. This final rule preamble also
clarifies a federal agency’s obligation
under section 401(a)(2) to notify the
EPA when it receives certification for a
general license or permit.
2. Summary of Final Rule Rationale and
Public Comment
The majority of certifications are
issued for projects that require an
individual federal license or permit.
However, certifications are also required
prior to the issuance or establishment of
15 (2009); Belville Mining Co. v. United States, 999
F.2d 989, 997 (6th Cir. 1993).
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a general license or permit. General
licenses and permits are vital to the
effective operation of several federal
programs such as the CWA section 402
and section 404 programs, producing
efficiencies that save time and money
for project proponents and regulators.
General licenses and permits provide
streamlined procedures for project
proponents by authorizing categories of
discharges or simplified review
procedures when the discharges comply
with specified requirements. Federal
licensing and permitting agencies must
obtain a section 401 certification when
issuing general licenses or permits, and
the final rule accounts for the potential
variation of future projects or activities
that may be covered under the general
license or permit. The final rule
provides slightly modified requirements
to account for differences between
individual and general licenses and
permits in the water quality certification
context.
a. Certification Request for a General
License or Permit
The Agency took comment on
whether federal agencies seeking
certification for a general license or
permit should be subject to the same or
different ‘‘certification request’’
submittal requirements as other project
proponents seeking certification for an
individual license or permit. A few
commenters stated that federal agencies
should follow the same procedures as
other project proponents for submitting
certification requests. Another
commenter encouraged the EPA to
revise the elements of a certification
request to provide flexibility for general
licenses or permits, because the type,
means, and methods used to monitor
the future discharges that may be
authorized in the future may not be
known. The final rule includes specific
requirements for certification requests
for the issuance of general licenses or
permits.
Where a federal agency is seeking to
issue a general license or permit, the
EPA expects the federal agency to
follow the requirements of section
121.5(c) of the final rule. Section
121.5(c) of the final rule includes a list
of documents and information required
for ‘‘certification request for issuance of
a general license or permit,’’ similar to
the list that was included in the
proposed rule as an alternative
approach:
1. Identify the project proponent(s) and a
point of contact;
2. identify the proposed categories of
activities to be authorized by the general
license or permit for which certification is
requested;
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3. include the draft or proposed general
license or permit;
4. estimate the number of discharges
expected to be authorized by the proposed
general license or permit each year;
5. include documentation that a pre-filing
meeting request was submitted to the
certifying authority at least 30 days prior to
submitting the certification request;
6. contain the following statement: ‘The
project proponent hereby certifies that all
information contained herein is true,
accurate, and complete to the best of my
knowledge and belief’; and
7. contain the following statement: ‘The
project proponent hereby requests that the
certifying authority review and take action on
this CWA 401 certification request within the
applicable reasonable period of time.’
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The list in section 121.5(c) is similar
to the list in section 121.5(b) of the final
rule, including the two new
requirements (a statement that all
information contained in the request is
true, accurate, and complete to the best
of the project proponent’s knowledge,
and documentation that a pre-filing
meeting request was submitted to the
certifying authority at least 30 days
prior to submitting the certification
request), but with some differences to
account for the distinctions between
issuing a general license or permit and
issuing a license or permit for a specific
project, with respect to the available
information at the time of certification.
The Agency has made these changes
regarding how general licenses and
permits are handled under this final
rule to improve clarity and for
consistent administration of section 401
for all general licenses and permits.
b. Information Requirements for General
License or Permit Certification
Conditions and Denials
Consistent with commenters and
other federal agency concerns regarding
the need to account for the differences
between individual and general license
and permits, the final rule contains
additional language in sections 121.7(d)
and 121.7(e) to ensure that the rule can
be consistently and appropriately
applied to certifications issued for the
issuance of general licenses and
permits. Section 121.7(d)(1) of the final
rule provides the information
requirements for certification conditions
that apply when a project proponent has
requested certification for an individual
license or permit that may result in a
specific discharge or set of discharges
into waters of the United States. See
section III.C of this notice. The final rule
includes a new section 121.7(d)(2),
which provides slightly different
information requirements for
certification conditions for issuance of
general licenses and permits.
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Certifications for issuance of general
permits and licenses must include the
information requirements in section
121.7(d)(2) of the final rule.
For each certification condition on
issuance of a general license or permit,
section 121.7(d)(2) of the final rule
requires:
(i) A statement explaining why the
condition is necessary to assure that any
discharge authorized under the general
license or permit will comply with
water quality requirements; and
(ii) A citation to federal, state, or tribal
law that authorizes the condition.
Similarly, section 121.7(e)(1) of the
final rule provides the information
requirements for certification denials
that apply when a project proponent has
requested certification for an individual
license or permit that may result in a
specific discharge or set of discharges
into waters of the United States. See
section III.G.2.c of this notice. The final
rule also includes a new section
121.7(e)(2), which provides slightly
different information requirements for
denials for general licenses and permits.
For each certification denial for
issuance of a general license or permit,
section 121.7(e)(2) of the final rule
requires:
(i) The specific water quality requirements
with which discharges that could be
authorized by the general license or permit
will not comply;
(ii) A statement explaining why discharges
that could be authorized by the general
license or permit will not comply with the
identified water quality requirements; and
(iii) If the denial is due to insufficient
information, the denial must describe the
types of water quality data or information, if
any, that would be needed to assure that the
range of discharges from potential projects
will comply with water quality requirements.
Although these are both new
provisions in the final rule, the
substance of these information
requirements is very similar to the
information requirements for
certification conditions and denials for
individual licenses and permits that
were included in the proposed rule. The
EPA made only slight changes to these
proposed provisions to facilitate their
application in the general licensing and
permitting context. Certification denials
for a general license or permit must
contain the information in section
121.7(e)(2) of the final rule.
c. Other Provisions of the Final Rule
Also Apply to Certifications for General
Licenses or Permits
As mentioned in sections III.B and
III.I of this notice, the EPA expects that
all of the procedural and substantive
requirements in this final rule will
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42281
apply to entities seeking certification for
a general license or permit. As
discussed in section III.I of this notice,
section 401(a)(2) provides a mechanism
for the EPA to notify a State or an
authorized Tribe where the EPA has
determined that the discharge from a
certified project may affect the quality of
that State’s or Tribe’s waters. The Act
requires federal agencies to notify the
EPA of certifications and associated
federal licensing or permitting
applications. 33 U.S.C. 1341(a)(2). This
statutory obligation extends to any
circumstance where a federal agency
receives a certification, including where
the federal agency receives certification
for issuance of a general license or
permit.
The EPA is finalizing a pre-filing
meeting requirement that requires all
project proponents, including federal
agencies when they seek certification for
general licenses or permits, to request a
meeting with a certifying authority at
least 30 days prior to submitting a
certification request, as discussed in
section III.B of this notice.
IV. Economic Analysis
Pursuant to Executive Orders 12866
and 13563, the Agency conducted an
economic analysis to better understand
the potential effects of this final rule on
certifying authorities and project
proponents. While the economic
analysis is informative in the
rulemaking context, the EPA is not
relying on the analysis as a basis for this
final rule. See, e.g., Nat’l. Assn. of
Homebuilders v. EPA, 682 F.3d 1032,
1039–40 (D.C. Cir. 2012). The analysis is
contained and described more fully in
the document Economic Analysis for the
Clean Water Act Section 401
Certification Rule (‘‘the Economic
Analysis’’). A copy of this document is
available in the docket for this action.
Section 401 certification decisions
have varying effects on certifying
authorities and project proponents. The
Agency has limited data regarding the
number of certification requests
submitted and the outcome of those
certifications. To make the best use of
limited information to assess the
potential impacts of this final rule on
project proponents and certifying
authorities, the Economic Analysis
provides a qualitative analysis of the
section 401 certification process under
the 1971 certification regulations and
under the final rule. In particular, the
Economic Analysis focuses on the
revisions to the time period for review,
the scope of review, and the pre-filing
meeting request requirement.
This final rule will help certifying
authorities, federal agencies, and project
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proponents understand what is required
and expected during the section 401
certification process, thereby increasing
transparency and reducing regulatory
uncertainty. The EPA concludes that
improved clarity concerning the time
period for review and the scope of
review may make the certification
process more efficient for project
proponents and certifying authorities.
V. Statutory and Executive Order
Reviews
Additional information about these
statutes and Executive Orders can be
found at https://www.epa.gov/lawsregulations/laws-and-executive-orders.
A. Executive Order 12866: Regulatory
Planning and Review; Executive Order
13563: Improving Regulation and
Regulatory Review
This action is a significant regulatory
action that was submitted to the Office
of Management and Budget (OMB) for
review. Any changes made in response
to OMB recommendations have been
documented in the docket for this
action. In addition, the Agency prepared
an analysis of potential costs and
benefits associated with this action.
This analysis is contained in the
Economic Analysis, which is available
in the docket and is briefly summarized
in Section IV of this notice. While
economic analyses are informative in
the rulemaking context, the Agency is
not relying on the economic analysis
performed pursuant to Executive Orders
12866 and 13563 and related procedural
requirements as a basis for this final
rule.
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B. Executive Order 13771: Reducing
Regulation and Controlling Regulatory
Costs
Pursuant to Executive Order 13771
(82 FR 9339, February 3, 2017), this
final rule is a deregulatory action. See
the Economic Analysis for further
discussion about the potential effects of
this rule.
C. Paperwork Reduction Act
The information collection activities
in this final rule have been submitted
for approval to the Office of
Management and Budget (OMB) under
the Paperwork Reduction Act (PRA).
The Information Collection Request
(ICR) document that the EPA prepared
has been assigned EPA ICR number
2603.05 (OMB Control No. 2040–0295).
You can find a copy of the ICR in the
docket for this rule, and it is briefly
summarized here. The information
collection requirements are not
enforceable until they are approved by
OMB.
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The information collected under this
ICR is used by certifying authorities for
reviewing proposed projects for
potential water quality impacts from
discharges from an activity that requires
a federal license or permit, and by the
EPA to evaluate potential effects on
downstream or neighboring
jurisdictions. Except for when the EPA
is the certifying authority, information
collected under section 401 is not
directly collected by or managed by the
EPA. The primary collection of
information is performed by States and
Tribes acting as certifying authorities.
Information collected directly by the
EPA under section 401 in support of the
section 402 program is already captured
under existing EPA ICR No. 0229.22
(OMB Control No. 2040–0295).
The final rule clarifies the information
that project proponents must provide to
request a section 401 certification and
introduces a pre-filing meeting request
requirement for all project proponents.
The final rule also removes information
requirements related to certification
modifications and section 401(a)(2)
procedures for neighboring
jurisdictions, and provides additional
transparency by identifying,
unambiguously, information necessary
to support certification actions. The
EPA expects this final rule will provide
greater clarity on section 401
requirements, reduce the overall
preparation time spent by a project
proponent on certification requests, and
reduce the review time for certifying
authorities.
In the interest of transparency and
public understanding, the EPA has
provided here relevant portions of the
burden assessment of the final rule.
More information about the burden
assessment can be found in the
supporting statement for the ICR.
Respondents/affected entities: Project
proponents, State and Tribal reviewers
(certifying authorities).
Respondent’s obligation to respond:
required to obtain 401 certification (33
U.S.C. 1341(a)(1)).
Estimated number of respondents:
97,119 per year.
Frequency of response: one per
federal application.
Total estimated burden: 931,000
hours (per year). Burden is defined at 5
CFR 1320.3(b).
Total estimated cost: $58 Million (per
year), includes $8 Million annualized
capital or operation & maintenance
costs.
The final rule results in an estimated
marginal burden decrease of 136,000
hours. This marginal decrease is
associated with the reduction of
information requirements in the final
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rule and a projected decrease in
certifying authority review times
associated with the clearer scope of
certification in section 121.3 of the final
rule. A full description of the analysis
is available in the supporting statement
accompanying this information
collection request.
An agency may not conduct or
sponsor, and a person is not required to
respond to, a collection of information
unless it displays a currently valid OMB
control number. The OMB control
numbers for the EPA’s regulations in 40
CFR are listed in 40 CFR part 9. When
OMB approves this ICR, the Agency will
announce that approval in the Federal
Register and publish a technical
amendment to 40 CFR part 9 to display
the OMB control number for the
approved information collection
activities contained in this final rule.
D. Regulatory Flexibility Act
I certify that this action will not have
a significant economic impact on a
substantial number of small entities
under the Regulatory Flexibility Act
(RFA). In making this determination, the
impact of concern is any significant
adverse economic impact on small
entities. An agency may certify that a
rule will not have a significant
economic impact on a substantial
number of small entities if the rule
relieves regulatory burden, has no net
burden, or otherwise has a positive
economic effect on the small entities
subject to the rule.
Under section 401, a federal agency
may not issue a license or permit to
conduct any activity that may result in
any discharge into waters of the United
States, unless the State or authorized
Tribe where the discharge would
originate (or the EPA, in certain
circumstances described above) either
(1) issues a section 401 water quality
certification finding compliance with
applicable water quality requirements or
(2) waives certification. Under section
401 and this final rule, the applicant for
the federal license or permit (the project
proponent) is required to request and
obtain a water quality certification. This
action provides project proponents with
greater clarity and regulatory certainty
on the substantive and procedural
requirements for obtaining a water
quality certification. This action also
provides procedural clarity to certifying
authorities and Federal licensing and
permitting agencies. The Agency
anticipates this action will result in
faster, more efficient and more
transparent decision-making by
certifying authorities. As discussed in
the Economic Analysis accompanying
this final rule, the Agency concludes
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that improved clarity concerning the
scope and reasonable period of time for
certification review may make the
certification process more efficient for
project proponents, including small
entities, and does not expect the cost of
the rule to result in a significant
economic impact on a substantial
number of small entities.
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E. Unfunded Mandates Reform Act
This action does not contain an
unfunded mandate of $100 million or
more as described in the Unfunded
Mandates Reform Act of 1995 (UMRA),
2 U.S.C. 1531–1538, and does not
contain any regulatory requirements
that significantly or uniquely affect
small governments. While this action
creates enforceable duties for the private
sector, the cost does not exceed $100
million or more. This action does not
create enforceable duties for State and
Tribal governments. See Section IV of
this notice for further discussion on the
Economic Analysis.
F. Executive Order 13132: Federalism
Executive Order 13132, titled
‘‘Federalism’’ (64 FR 43255, August 10,
1999), requires federal agencies to
develop an accountable process to
ensure ‘‘meaningful and timely input by
state and local officials in the
development of regulatory policies that
have federalism implications.’’ The
Executive Order defines ‘‘policies that
have federalism implications’’ to
include regulations that have
‘‘substantial direct effects on the states,
on the relationship between the national
government and the states, or on the
distribution of power and
responsibilities among the various
levels of government.’’ The Agency
concludes that the final rule may have
federalism implications because it may
impact how some States have
historically implemented water quality
certification programs. This final rule
makes the EPA’s CWA section 401
regulation consistent with the statutory
language, and acknowledges that States
may modify their practices to be
consistent with this regulation. The EPA
provides the following federalism
summary impact statement.
The Agency consulted with State and
local government officials, or their
representative national organizations,
during the development of this action as
required under the terms of Executive
Order 13132 to permit them to have
meaningful and timely input into the
proposed rule’s development. On April
24, 2019, the Agency initiated a 30-day
Federalism consultation period prior to
proposing this rule to allow for
meaningful input from State and local
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governments. The kickoff Federalism
consultation meeting occurred on April
23, 2019; attendees included
representatives of intergovernmental
associations and other associations
representing State and local
governments. Organizations in
attendance included: National
Governors Association, U.S. Conference
of Mayors, National Conference of State
Legislatures, the Environmental Council
of the States, National League of Cities,
Council of State Governments, National
Association of Counties, National
Association of Towns and Townships,
Association of Clean Water
Administrators, Western States Water
Council, Conference of Western
Attorneys General, Association of State
Wetland Managers, and Western
Governors’ Association. Additionally,
one in-person meeting was held with
the National Governors Association on
May 7, 2019. The Agency also held an
informational webinar for States and
Tribes on May 8, 2019. At these
webinars and meetings, the EPA
provided a presentation and sought
input on areas of section 401 that may
require clarification, including
timeframe, scope of certification review,
and coordination among project
proponents, certifying authorities, and
federal licensing or permitting agencies.
See section II.C of this notice for more
information on outreach with States
prior to Federalism consultation.
Letters and webinar attendee feedback
received by the Agency before and
during Federalism consultation may be
found on the pre-proposal
recommendations docket (Docket ID No.
EPA–HQ–OW–2018–0855, available at
https://www.regulations.gov/docket?
D=EPA-HQ-OW-2018-0855). These
webinars, meetings, and letters provided
a wide and diverse range of interests,
positions, and recommendations to the
Agency. Following publication of the
proposed rule, the Agency held two
additional in-person meetings with
State representatives to answer
clarifying questions about the proposal
and to discuss implementation
considerations. The Agency has
prepared a report summarizing its
consultation and additional outreach to
state and local governments and the
results of this outreach. A copy of the
final report is available in the docket
(Docket ID No. EPA–HQ–OW–2019–
0405) for this final rule. Correspondence
received from State and local
governments and their representative
national associations during the public
comment period can be found in Docket
ID No. EPA–HQ–OW–2019–0405,
available at https://
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42283
www.regulations.gov/docket?D=EPAHQ-OW-2019-0405.
During Federalism consultation and
engagement efforts and in the State and
local government comments on the
proposed rule, many States expressed
concern that the proposed rule would
adversely impact State authority and
States’ ability to protect state waters.
Commenters raised several concerns,
including concerns about the federal
agency review role in the certification
process; constraints on the certification
review process, including the scope,
timeframe, and information to start the
statutory review clock; information
requirements to act on a certification
request; State enforcement role in
certification; and the potential impact
on existing State regulations and law.
The Agency acknowledges that the
final rule may change how States
administer the section 401 program, but
has made adjustments in the final rule
to account for many of the concerns
raised by states. The Agency has made
certain changes in response to
comments, including comments from
States and local governments. The final
rule preserves the robust State role in
the certification process in a manner
consistent with the CWA. As discussed
in section III.G of this notice, the final
rule does not provide federal agencies
with a role in substantively reviewing
State certification decisions.
Additionally, the final rule expands the
pre-filing meeting requirement to all
project proponents and allows States, in
their discretion, to meet with project
proponents to discuss information
needs and concerns prior to starting the
reasonable period of time. The final rule
notice also clarifies that certifying
authorities may request additional
information during the reasonable
period of time, and the final rule
preserves certifying authorities’ ability
to deny certification requests if they
have inadequate information to
determine whether a discharge complies
with water quality requirements. The
final rule definition of ‘‘water quality
requirements’’ no longer limits other
appropriate requirements of State law to
requirements that are EPA-approved;
rather, the definition captures State or
Tribal regulatory requirements for point
source discharges into waters of the
United States. The final rule also
removes the requirement for certifying
authorities to provide a statement of
whether and to what extent a less
stringent condition could satisfy
applicable water quality requirements.
As required by Section 8(a) of
Executive Order 13132, the EPA
included a certification from its
Federalism Official stating that the EPA
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had met the Executive Order’s
requirements in a meaningful and
timely manner. A copy of this
certification is included in the official
record for this final action.
G. Executive Order 13175: Consultation
and Coordination With Indian Tribal
Governments
Executive Order 13175, entitled
‘‘Consultation and Coordination with
Indian Tribal Governments’’ (65 FR
67249, Nov. 9, 2000), requires agencies
to develop an accountable process to
ensure ‘‘meaningful and timely input by
tribal officials in the development of
regulatory policies that have tribal
implications.’’ This action has Tribal
implications. However, it will neither
impose substantial direct compliance
costs on federally recognized Tribal
governments nor preempt Tribal law.
During Tribal consultation and
engagement efforts and in Tribal
comments on the proposed rule, many
Tribes expressed concern that the
proposed rule would adversely impact
Tribal waters. The final rule may affect
how Tribes with treatment in a similar
manner as a state (TAS) for CWA
section 401 administer their section 401
program, but will not have an
administrative impact on Tribes for
whom the EPA certifies on their behalf.
The Agency has made changes in the
final rule in response to comments,
including comments from Tribes. The
final rule maintains the ability for
Tribes to provide input in the
certification process and preserves the
robust Tribal role in the certification
process in a manner consistent with the
CWA.
The Agency consulted with Tribal
officials at the beginning of rule
development to permit meaningful and
timely input, consistent with the EPA
Policy on Consultation and
Coordination with Indian Tribes. The
EPA initiated a Tribal consultation and
coordination process before proposing
this rule by sending a ‘‘Notification of
Consultation and Coordination’’ letter
dated April 22, 2019, to all 573
Federally recognized Tribes. The letter
invited Tribal leaders and designated
consultation representatives to
participate in the Tribal consultation
and coordination process. The Agency
held two identical webinars on this
action for Tribal representatives on May
7 and May 15, 2019. The Agency also
presented on this action at the Region 9
Regional Tribal Operations Committee
Spring meeting on May 22, 2019.
Additionally, Tribes were invited to two
webinars for States, Tribes, and local
governments on April 17, 2019 and May
8, 2019. Tribes and Tribal organizations
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sent 15 pre-proposal recommendation
letters to the Agency as part of the
consultation process. All Tribal and
Tribal organization letters and webinar
feedback may be found on the preproposal recommendations docket
(Docket ID No. EPA–HQ–OW–2018–
0855). The Agency met with four Tribes
at the staff-level.
The Agency continued engagement
with Tribes after the end of the formal
consultation period. Following the
publication of the proposed rule, the
Agency held two in-person meetings
with Tribal representatives to answer
clarifying questions about the proposal,
and to discuss implementation
considerations and Tribal interest in the
section 401 water quality certification
process. In addition, the Agency
continued to meet with individual
Tribes requesting consultation or
engagement following publication of the
proposed rule, holding staff-level
meetings with 11 Tribes and leader-toleader level meetings with two Tribes
post-proposal. In total, the Agency met
with 14 individual Tribes requesting
consultation, holding leader-to-leader
level consultation meetings with two
individual Tribes and staff-level
meetings with 13 individual Tribes (the
Agency met with some Tribes more than
once). The Agency has prepared a report
summarizing the consultation and
further engagement with Tribal nations.
This report, Summary Report of Tribal
Consultation and Engagement for the
Clean Water Act Section 401
Certification Rule (Docket ID No. EPA–
HQ–OW–2019–0405), is available in the
docket for this final rule.
As required by section 7(a), the EPA’s
Tribal Consultation Official has certified
that the requirements of the executive
order have been met in a meaningful
and timely manner. A copy of the
certification is included in the docket
for this action.
H. Executive Order 13045: Protection of
Children From Environmental Health
and Safety Risks
This action is not subject to Executive
Order 13045 (62 FR 19885, April 23,
1997) because the environmental health
or safety risks addressed by this action
do not present a disproportionate risk to
children.
I. Executive Order 13211: Actions
Concerning Regulations That
Significantly Affect Energy Supply,
Distribution, or Use
This action is not a ‘‘significant
energy action’’ as defined in Executive
Order 13211 (66 FR 28355, May 22,
2001), because it is not likely to have a
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significant adverse effect on the supply,
distribution, or use of energy.
J. National Technology Transfer and
Advancement Act
This action is not subject to the
National Technology Transfer and
Advancement Act of 1995 because the
rule does not involve technical
standards.
K. Executive Order 12898: Federal
Actions To Address Environmental
Justice in Minority Populations and
Low-Income Populations
This action is not subject to Executive
Order 12898 (59 FR 7629, February 11,
1994) because there is no significant
evidence of disproportionately high and
adverse human health or environmental
effects on minority populations, low
income populations, and/or indigenous
populations, as specified in Executive
Order 12898.
L. Congressional Review Act
This action is subject to the CRA, and
the EPA will submit a rule report to
each House of the Congress and to the
Comptroller General of the United
States. This action is not a ‘‘major rule’’
as defined by 5 U.S.C. 804(2).
List of Subjects in 40 CFR Part 121
Environmental protection,
Administrative practice and procedure,
Intergovernmental relations, Water
pollution control.
Andrew Wheeler,
Administrator.
For the reasons set forth in the
preamble, EPA is revising 40 CFR part
121 as follows:
PART 121—STATE CERTIFICATION OF
ACTIVITIES REQUIRING A FEDERAL
LICENSE OR PERMIT
Sec.
Subpart A—General
121.1 Definitions.
Subpart B—Certification Procedures
121.2 When certification is required.
121.3 Scope of certification.
121.4 Pre-filing meeting request.
121.5 Certification request.
121.6 Establishing the reasonable period of
time.
121.7 Action on a certification request.
121.8 Effect of denial of certification.
121.9 Waiver.
121.10 Incorporation of certification
conditions into the license or permit.
121.11 Enforcement and compliance of
certification conditions.
Subpart C—Other Jurisdictions
121.12 Determination of effects on
neighboring jurisdictions.
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Subpart D—Certification by the
Administrator
121.13 When the Administrator certifies.
121.14 Request for additional information.
121.15 Notice and hearing.
Subpart E—Consultations
121.16 Review and advice.
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Authority: 33 U.S.C. 1251 et seq.
accordance with applicable submission
procedures.
(n) Water quality requirements means
applicable provisions of §§ 301, 302,
303, 306, and 307 of the Clean Water
Act, and state or tribal regulatory
requirements for point source
discharges into waters of the United
States.
Subpart A—General
Subpart B—Certification Procedures
§ 121.1
§ 121.2
Definitions.
(a) Administrator means the
Administrator of the Environmental
Protection Agency or an authorized
representative.
(b) Certification means a water quality
certification issued in accordance with
Clean Water Act section 401 and this
part.
(c) Certification request means a
written, signed, and dated
communication that satisfies the
requirements of § 121.5(b) or (c).
(d) Certified project means a proposed
project that has received a certification
or for which the certification
requirement has been waived.
(e) Certifying authority means the
agency responsible for certifying
compliance with applicable water
quality requirements in accordance with
Clean Water Act section 401.
(f) Discharge for purposes of this part
means a discharge from a point source
into a water of the United States.
(g) Federal agency means any agency
of the Federal Government to which
application is made for a license or
permit that is subject to Clean Water Act
section 401.
(h) License or permit means any
license or permit granted by an agency
of the Federal Government to conduct
any activity which may result in a
discharge.
(i) Neighboring jurisdiction means any
other state or authorized tribe whose
water quality the Administrator
determines may be affected by a
discharge for which a certification is
granted pursuant to Clean Water Act
section 401 and this part.
(j) Project proponent means the
applicant for a license or permit or the
entity seeking certification.
(k) Proposed project means the
activity or facility for which the project
proponent has applied for a license or
permit.
(l) Reasonable period of time means
the time period during which a
certifying authority may act on a
certification request, established in
accordance with § 121.6 of this part.
(m) Receipt means the date that a
certification request is documented as
received by a certifying authority in
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When certification is required.
Certification is required for any
license or permit that authorizes an
activity that may result in a discharge.
§ 121.3
Scope of certification.
The scope of a Clean Water Act
section 401 certification is limited to
assuring that a discharge from a
Federally licensed or permitted activity
will comply with water quality
requirements.
§ 121.4
Pre-filing meeting request.
(a) At least 30 days prior to submitting
a certification request, the project
proponent shall request a pre-filing
meeting with the certifying authority.
(b) The certifying authority is not
obligated to grant or respond to the prefiling meeting request.
(c) If the certifying authority grants
the pre-filing meeting request, the
project proponent and the certifying
authority are encouraged to discuss the
nature of the proposed project and
potential water quality effects. The
project proponent is encouraged to
provide a list of other required state,
interstate, tribal, territorial, and federal
authorizations and to describe the
anticipated timeline for construction
and operation.
(d) After receiving the pre-filing
meeting request, the certifying authority
is encouraged to contact the Federal
agency and to identify points of contact
to facilitate information sharing between
the certifying authority and Federal
agency throughout the certification
process.
§ 121.5
Certification request.
(a) A certification request shall be
submitted to the certifying authority and
to the Federal agency concurrently.
(b) A certification request for an
individual license or permit shall:
(1) Identify the project proponent(s)
and a point of contact;
(2) Identify the proposed project;
(3) Identify the applicable federal
license or permit;
(4) Identify the location and nature of
any potential discharge that may result
from the proposed project and the
location of receiving waters;
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42285
(5) Include a description of any
methods and means proposed to
monitor the discharge and the
equipment or measures planned to treat,
control, or manage the discharge;
(6) Include a list of all other federal,
interstate, tribal, state, territorial, or
local agency authorizations required for
the proposed project, including all
approvals or denials already received;
(7) Include documentation that a prefiling meeting request was submitted to
the certifying authority at least 30 days
prior to submitting the certification
request;
(8) Contain the following statement:
‘The project proponent hereby certifies
that all information contained herein is
true, accurate, and complete to the best
of my knowledge and belief’; and
(9) Contain the following statement:
‘The project proponent hereby requests
that the certifying authority review and
take action on this CWA 401
certification request within the
applicable reasonable period of time.’
(c) A certification request for issuance
of a general license or permit shall:
(1) Identify the project proponent(s)
and a point of contact;
(2) Identify the proposed categories of
activities to be authorized by the general
license or permit for which certification
is requested;
(3) Include the draft or proposed
general license or permit;
(4) Estimate the number of discharges
expected to be authorized by the
proposed general license or permit each
year;
(5) Include documentation that a prefiling meeting request was submitted to
the certifying authority at least 30 days
prior to submitting the certification
request;
(6) Contain the following statement:
‘The project proponent hereby certifies
that all information contained herein is
true, accurate, and complete to the best
of my knowledge and belief ’; and
(7) Contain the following statement:
‘The project proponent hereby requests
that the certifying authority review and
take action on this CWA 401
certification request within the
applicable reasonable period of time.’
§ 121.6 Establishing the reasonable period
of time.
(a) The Federal agency shall establish
the reasonable period of time either
categorically or on a case-by-case basis.
In either event, the reasonable period of
time shall not exceed one year from
receipt.
(b) Within 15 days of receiving notice
of the certification request from the
project proponent, the Federal agency
shall provide, in writing, the following
information to the certifying authority:
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(1) The date of receipt;
(2) The applicable reasonable period
of time to act on the certification
request; and
(3) The date upon which waiver will
occur if the certifying authority fails or
refuses to act on the certification
request.
(c) In establishing the reasonable
period of time, the Federal agency shall
consider:
(1) The complexity of the proposed
project;
(2) The nature of any potential
discharge; and
(3) The potential need for additional
study or evaluation of water quality
effects from the discharge.
(d) The Federal agency may extend
the reasonable period of time at the
request of a certifying authority or a
project proponent, but in no case shall
the reasonable period of time exceed
one year from receipt.
(1) Any request by a certifying
authority or project proponent to the
Federal agency to extend the reasonable
period of time shall be in writing.
(2) If the Federal agency agrees to
extend the reasonable period of time,
the Federal agency shall notify the
certifying authority and project
proponent in writing.
(e) The certifying authority is not
authorized to request the project
proponent to withdraw a certification
request and is not authorized to take any
action to extend the reasonable period
of time other than specified in
§ 121.6(d).
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§ 121.7
Action on a certification request.
(a) Any action by the certifying
authority to grant, grant with
conditions, or deny a certification
request must be within the scope of
certification, must be completed within
the reasonable period of time, and must
otherwise be in accordance with section
401 of the Clean Water Act.
Alternatively, a certifying authority may
expressly waive certification.
(b) If the certifying authority
determines that a discharge from a
proposed project will comply with
water quality requirements, it may issue
or waive certification. If the certifying
authority cannot certify that the
discharge from a proposed project will
comply with water quality
requirements, it may deny or waive
certification.
(c) Any grant of certification shall be
in writing and shall include a statement
that the discharge from the proposed
project will comply with water quality
requirements.
(d) Any grant of certification with
conditions shall be in writing and shall
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for each condition include, at a
minimum:
(1) For certification conditions on an
individual license or permit,
(i) A statement explaining why the
condition is necessary to assure that the
discharge from the proposed project will
comply with water quality
requirements; and
(ii) A citation to federal, state, or tribal
law that authorizes the condition.
(2) For certification conditions on
issuance of a general license or permit,
(i) A statement explaining why the
condition is necessary to assure that any
discharge authorized under the general
license or permit will comply with
water quality requirements; and
(ii) A citation to federal, state, or tribal
law that authorizes the condition.
(e) Any denial of certification shall be
in writing and shall include:
(1) For denial of certification for an
individual license or permit,
(i) The specific water quality
requirements with which the discharge
will not comply;
(ii) A statement explaining why the
discharge will not comply with the
identified water quality requirements;
and
(iii) If the denial is due to insufficient
information, the denial must describe
the specific water quality data or
information, if any, that would be
needed to assure that the discharge from
the proposed project will comply with
water quality requirements.
(2) For denial of certification for
issuance of a general license or permit,
(i) The specific water quality
requirements with which discharges
that could be authorized by the general
license or permit will not comply;
(ii) A statement explaining why
discharges that could be authorized by
the general license or permit will not
comply with the identified water quality
requirements; and
(iii) If the denial is due to insufficient
information, the denial must describe
the types of water quality data or
information, if any, that would be
needed to assure that the range of
discharges from potential projects will
comply with water quality
requirements.
(f) If the certifying authority
determines that no water quality
requirements are applicable to the
waters receiving the discharge from the
proposed project, the certifying
authority shall grant certification.
§ 121.8
Effect of denial of certification.
(a) A certification denial shall not
preclude a project proponent from
submitting a new certification request,
in accordance with the substantive and
procedural requirements of this part.
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(b) Where a Federal agency
determines that a certifying authority’s
denial satisfies the requirements of
§ 121.7(e), the Federal agency must
provide written notice of such
determination to the certifying authority
and project proponent, and the license
or permit shall not be granted.
§ 121.9
Waiver.
(a) The certification requirement for a
license or permit shall be waived upon:
(1) Written notification from the
certifying authority to the project
proponent and the Federal agency that
the certifying authority expressly waives
its authority to act on a certification
request; or
(2) The certifying authority’s failure or
refusal to act on a certification request,
including:
(i) Failure or refusal to act on a
certification request within the
reasonable period of time;
(ii) Failure or refusal to satisfy the
requirements of § 121.7(c);
(iii) Failure or refusal to satisfy the
requirements of § 121.7(e); or
(iv) Failure or refusal to comply with
other procedural requirements of
section 401.
(b) A condition for a license or permit
shall be waived upon the certifying
authority’s failure or refusal to satisfy
the requirements of § 121.7(d).
(c) If the certifying authority fails or
refuses to act, as provided in this
section, the Federal agency shall
provide written notice to the
Administrator, certifying authority, and
project proponent that waiver of the
certification requirement or condition
has occurred. This notice must be in
writing and include the notice that the
Federal agency provided to the
certifying authority pursuant to
§ 121.6(b).
(d) A written notice of waiver from
the Federal agency shall satisfy the
project proponent’s requirement to
obtain certification.
(e) Upon issuance of a written notice
of waiver, the Federal agency may issue
the license or permit.
§ 121.10 Incorporation of certification
conditions into the license or permit.
(a) All certification conditions that
satisfy the requirements of § 121.7(d)
shall be incorporated into the license or
permit.
(b) The license or permit must clearly
identify any certification conditions.
§ 121.11 Enforcement of and compliance
with certification conditions.
(a) The certifying authority, prior to
the initial operation of a certified
project, shall be afforded the
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opportunity to inspect the facility or
activity for the purpose of determining
whether the discharge from the certified
project will violate the certification.
(b) If the certifying authority, after an
inspection pursuant to subsection (a),
determines that the discharge from the
certified project will violate the
certification, the certifying authority
shall notify the project proponent and
the Federal agency in writing, and
recommend remedial measures
necessary to bring the certified project
into compliance with the certification.
(c) The Federal agency shall be
responsible for enforcing certification
conditions that are incorporated into a
federal license or permit.
Subpart C—Other Jurisdictions
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§ 121.12 Determination of effects on
neighboring jurisdictions.
(a) A Federal agency shall within 5
days notify the Administrator when it
receives a license or permit application
and the related certification.
(b) Within 30 days after the
Administrator receives notice in
accordance with § 121.12(a), the
Administrator at his or her discretion
may determine that the discharge from
the certified project may affect water
quality in a neighboring jurisdiction. In
making this determination and in
accordance with applicable law, the
Administrator may request copies of the
certification and the federal license or
permit application.
(c) If the Administrator determines
that the discharge from the certified
project may affect water quality in a
neighboring jurisdiction, the
Administrator, within 30 days after
receiving notice in accordance with
§ 121.12(a), shall notify that neighboring
jurisdiction, the certifying authority, the
Federal agency, and the project
proponent. The federal license or permit
may not be issued pending the
conclusion of the processes in this
paragraph.
(1) Notification from the
Administrator shall: Be in writing, be
dated, and identify the materials
provided by the Federal agency. The
notification shall inform the
neighboring jurisdiction that it has 60
days to notify the Administrator and the
Federal agency, in writing, whether it
has determined that the discharge will
violate any of its water quality
requirements, to object to the issuance
of the federal license or permit, and to
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request a public hearing from the
Federal agency.
(2) Notification of objection and
request for a hearing from the
neighboring jurisdiction shall: Be in
writing; identify the receiving waters it
determined will be affected by the
discharge; and identify the specific
water quality requirements it
determines will be violated by the
certified project.
(3) If the neighboring jurisdiction
requests a hearing in accordance with
§ 121.12(c)(2), the Federal agency shall
hold a public hearing on the
neighboring jurisdiction’s objection to
the license or permit.
(i) The Federal agency shall provide
the hearing notice to the Administrator
at least 30 days before the hearing takes
place.
(ii) At the hearing, the Administrator
shall submit to the Federal agency his
or her evaluation and
recommendation(s) concerning the
objection.
(iii) The Federal agency shall:
Consider recommendations from the
neighboring jurisdiction and the
Administrator, and any additional
evidence presented to the Federal
agency at the hearing; and determine
whether additional certification
conditions are necessary to assure that
the discharge from the certified project
will comply with the neighboring
jurisdiction’s water quality
requirements.
(iv) If additional certification
conditions cannot assure that the
discharge from the certified project will
comply with the neighboring
jurisdiction’s water quality
requirements, the Federal agency shall
not issue the license or permit.
Subpart D—Certification by the
Administrator
§ 121.13
When the Administrator certifies.
(a) Certification by the Administrator
that the discharge from a proposed
project will comply with water quality
requirements is required where no state,
tribe, or interstate agency has authority
to give such a certification.
(b) In taking action pursuant to this
paragraph, the Administrator shall
comply with the requirements of Clean
Water Act section 401 and 40 CFR part
121.
§ 121.14 Request for additional
information.
(a) If necessary, the Administrator
may request additional information
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42287
from the project proponent, provided
that the initial request is made within
30 days of receipt.
(b) The Administrator shall request
only additional information that is
within the scope of certification and is
directly related to the discharge from
the proposed project and its potential
effect on receiving waters.
(c) The Administrator shall request
only information that can be collected
or generated within the reasonable
period of time.
(d) In any request for additional
information, the Administrator shall
include a deadline for the project
proponent to respond.
(1) The project proponent shall
comply with the deadline established by
the Administrator.
(2) The deadline must allow sufficient
time for the Administrator to review the
additional information and to act on the
certification request within the
reasonable period of time.
(e) Failure of a project proponent to
timely provide the Administrator with
additional information does not extend
the reasonable period of time or prevent
the Administrator from taking action on
a certification request.
§ 121.15
Notice and hearing.
(a) Within 20 days of receipt, the
Administrator shall provide appropriate
public notice of receipt, including to
parties known to be interested in the
proposed project or in the receiving
waters into which the discharge may
occur.
(b) If the Administrator in his or her
discretion determines that a public
hearing is appropriate or necessary, the
EPA shall: Schedule such hearing at an
appropriate time and place; and, to the
extent practicable, give all interested
and affected parties the opportunity to
present evidence or testimony in person
or by other means at the hearing.
Subpart E—Consultations
§ 121.16
Review and advice.
The Administrator may, and upon
request shall, provide Federal agencies,
certifying authorities, and project
proponents with relevant information
and assistance regarding the meaning of,
content of, application of, and methods
to comply with water quality
requirements.
[FR Doc. 2020–12081 Filed 7–10–20; 8:45 am]
BILLING CODE 6560–50–P
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Agencies
[Federal Register Volume 85, Number 134 (Monday, July 13, 2020)]
[Rules and Regulations]
[Pages 42210-42287]
From the Federal Register Online via the Government Publishing Office [www.gpo.gov]
[FR Doc No: 2020-12081]
[[Page 42209]]
Vol. 85
Monday,
No. 134
July 13, 2020
Part IV
Environmental Protection Agency
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40 CFR Part 121
Clean Water Act Section 401 Certification Rule; Final Rule
Federal Register / Vol. 85, No. 134 / Monday, July 13, 2020 / Rules
and Regulations
[[Page 42210]]
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ENVIRONMENTAL PROTECTION AGENCY
40 CFR Part 121
[EPA-HQ-OW-2019-0405; FRL-10009-80-OW]
RIN 2040-AF86
Clean Water Act Section 401 Certification Rule
AGENCY: Environmental Protection Agency (EPA).
ACTION: Final rule.
-----------------------------------------------------------------------
SUMMARY: The Environmental Protection Agency (EPA) is publishing this
final rule to update and clarify the substantive and procedural
requirements for water quality certification under Clean Water Act (CWA
or the Act) section 401. CWA section 401 is a direct grant of authority
to States (and Tribes that have been approved for ``treatment as a
State'' status) to review for compliance with appropriate federal,
State, and Tribal water quality requirements any discharge into a water
of the United States that may result from a proposed activity that
requires a federal license or permit. This final rule is intended to
increase the predictability and timeliness of CWA section 401
certification actions by clarifying timeframes for certification, the
scope of certification review and conditions, and related certification
requirements and procedures.
DATES: This rule is effective on September 11, 2020.
ADDRESSES: The EPA has established a docket for this action under
Docket ID No. EPA-HQ-OW-2019-0405, at https://www.regulations.gov. All
documents in the docket are listed and available at https://www.regulations.gov. Although listed in the index, some information is
not publicly available, e.g. Confidential Business Information or other
information whose disclosure is restricted by statute. Certain other
materials, such as copyrighted material, is not placed on the internet
and will be publicly available only in hard copy form. Publicly
available docket materials are available electronically through https://www.regulations.gov.
FOR FURTHER INFORMATION CONTACT: Lauren Kasparek, Oceans, Wetlands, and
Communities Division, Office of Water (4504-T), Environmental
Protection Agency, 1200 Pennsylvania Avenue NW, Washington, DC 20460;
telephone number: (202) 564-5700; email address: [email protected].
SUPPLEMENTARY INFORMATION:
Table of Contents
I. General Information
A. How can I get copies of this document and related
information?
B. What action is the Agency taking?
C. Under what legal authority is this final rule issued?
II. Background
A. Executive Summary
B. Executive Order 13868: Promoting Energy Infrastructure and
Economic Growth
C. Summary of Stakeholder Engagement
D. Guidance Document
E. Effect on Existing Federal, State, and Tribal Laws
F. Legal Background
1. The Clean Water Act
2. The EPA's Role in Implementing Section 401
3. The EPA's 1971 Certification Regulations
4. Judicial Interpretations of Section 401
5. Administrative Law Principles
6. Response to Comments on the Legal Background
G. Legal Construct for the Final Rule
1. Scope of Certification
2. Timeline for Section 401 Certification Analysis
III. Final Rule
A. When Section 401 Certification is Required
B. Pre-filing Meeting Request
C. Certification Request/Receipt
D. Certification Actions
E. Appropriate Scope for Section 401 Certification Review
F. Timeframe for Certification Analysis and Decision
G. Contents and Effects of Certification
H. Certification by the Administrator
I. Determination of Effect on Neighboring Jurisdictions
J. The EPA's Role in Review and Advice
K. Enforcement
L. Modifications
M. General Licenses and Permits
IV. Economic Analysis
V. Statutory and Executive Order Reviews
A. Executive Order 12866: Regulatory Planning and Review;
Executive Order 13563: Improving Regulation and Regulatory Review
B. Executive Order 13771: Reducing Regulation and Controlling
Regulatory Costs
C. Paperwork Reduction Act
D. Regulatory Flexibility Act
E. Unfunded Mandates Reform Act
F. Executive Order 13132: Federalism
G. Executive Order 13175: Consultation and Coordination With
Indian Tribal Governments
H. Executive Order 13045: Protection of Children From
Environmental Health and Safety Risks
I. Executive Order 13211: Actions Concerning Regulations That
Significantly Affect Energy Supply, Distribution, or Use
J. National Technology Transfer and Advancement Act
K. Executive Order 12898: Federal Actions To Address
Environmental Justice in Minority Populations and Low-Income
Populations
L. Congressional Review Act
I. General Information
A. How can I get copies of this document and related information?
1. Docket. An official public docket for this action has been
established under Docket ID No. EPA-HQ-OW-2019-0405. The official
public docket consists of the documents specifically referenced in this
action, and other information related to this action. The official
public docket is the collection of materials that is available for
public viewing at the OW Docket, EPA West, Room 3334, 1301 Constitution
Ave. NW, Washington, DC 20004. This Docket Facility is open from 8:30
a.m. to 4:30 p.m., Monday through Friday, excluding legal holidays. The
OW Docket telephone number is 202-566-2426. A reasonable fee will be
charged for copies.
2. Electronic Access. You may access this Federal Register document
electronically under the ``Federal Register'' listings at https://www.regulations.gov. An electronic version of the public docket is
available through the EPA's electronic public docket and comment
system, the EPA Dockets. You may access the EPA Dockets at https://www.regulations.gov to view submitted public comments, access the index
listing of the contents of the official public docket, and access those
documents in the public docket that are available electronically. For
additional information about the EPA's public docket, visit the EPA
Docket Center homepage at https://www.epa.gov/epahome/dockets.htm.
Although not all docket materials may be available electronically, you
may still access any of the publicly available docket materials through
the Docket Facility.
B. What action is the Agency taking?
In this notice, the Agency is publishing a final rule updating the
water quality certification regulations in 40 CFR 121.
C. Under what legal authority is this final rule issued?
The authority for this action is the Federal Water Pollution
Control Act, 33 U.S.C. 1251 et seq., including sections 304(h), 401,
and 501(a).
II. Background
A. Executive Summary
Congress enacted section 401 of the CWA to provide States and
authorized Tribes with an important tool to help
[[Page 42211]]
protect the water quality of federally regulated waters within their
borders in collaboration with federal agencies. Under section 401, a
federal agency may not issue a license or permit to conduct any
activity that may result in any discharge into waters of the United
States,\1\ unless the State or authorized Tribe where the discharge
would originate either issues a section 401 water quality certification
finding compliance with applicable water quality requirements or
certification is waived. As described in greater detail below, section
401 envisions a robust State and Tribal role in the federal licensing
or permitting proceedings, including those in which local authority may
otherwise be preempted by federal law. Section 401 also places
important limitations on how that role may be implemented to maintain
an efficient process, consistent with the overall cooperative
federalism construct established by the CWA, as explained below in
section II.F.1 of this notice.
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\1\ The CWA, including section 401, uses ``navigable waters,''
defined as ``waters of the United States, including territorial
seas.'' 33 U.S.C. 1362(7). This final rule uses ``waters of the
United States'' throughout. In January 2020, the EPA revised the
definition of waters of the United States and expects the final
definition of the term to control in all CWA contexts. See 85 FR
22250 (April 21, 2020).
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Section 401 provides that a State or authorized Tribe must act on a
section 401 certification request ``within a reasonable period of time
(which shall not exceed one year)''.\2\ Section 401 does not guarantee
a State or Tribe a full year to act on a certification request, as the
statute only grants as much time as is reasonable. 33 U.S.C.
1341(a)(1). The CWA provides that the timeline for action on a section
401 certification begins ``after receipt'' of a certification request.
Id. If a State or Tribe does not grant, grant with conditions, deny, or
expressly waive the section 401 certification within a reasonable time
period, section 401 states that the ``the certification requirements of
this subsection shall be waived with respect to such Federal
application.'' Id. If the certification requirement has been waived and
the federal license or permit is issued, any subsequent action by a
State or Tribe to grant, grant with conditions, or deny section 401
certification has no legal force or effect.
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\2\ In some circumstances, the EPA can act as the certifying
authority. See section III.H of this notice for further discussion.
``If the State, interstate agency, or Administrator, as the case may
be, fails or refuses to act on a request for certification, within a
reasonable period of time (which shall not exceed one year) after
receipt of such request, the certification requirements of this
subsection shall be waived with respect to such Federal
application.'' 33 U.S.C. 1341(a)(1); see also Hoopa Valley Tribe v.
FERC, 913 F.3d 1099 (D.C. Cir. 2019).
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Section 401 authorizes States and Tribes to certify that a
discharge into waters of the United States that may result from a
proposed activity will comply with certain enumerated sections of the
CWA, including the effluent limitations and standards of performance
for new and existing discharge sources (sections 301, 302, and 306 of
the CWA), water quality standards and implementation plans (section
303), and toxic pretreatment effluent standards (section 307). When
granting a section 401 certification, States and Tribes are directed by
CWA section 401(d) to include conditions, including ``effluent
limitations and other limitations, and monitoring requirements'' that
are necessary to assure that the applicant for a federal license or
permit will comply with applicable provisions of CWA sections 301, 302,
306, and 307, and with ``any other appropriate requirement of State
law.''
As the Agency charged with administering the CWA,\3\ as well as a
certifying authority in certain instances, the EPA is responsible for
developing a common regulatory framework for certifying authorities to
follow when completing section 401 certifications. See 33 U.S.C.
1251(d), 1361(a). In 1971, the EPA promulgated regulations for
implementing the certification provisions pursuant to section 21(b) of
the Federal Water Pollution Control Act of 1948 (FWPCA), but the EPA
has never updated those regulations to reflect the 1972 amendments to
the FWPCA (commonly known as the Clean Water Act or CWA), which created
section 401, despite the fact that there were changes to the relevant
statutory text. Since the 1972 CWA amendments, the EPA issued two
guidance documents and participated as amicus curiae in court cases
concerning CWA section 401, but the Agency has not updated its
regulations to comport with the 1972 amendments and has not, to date,
established robust internal procedures for implementing its roles under
section 401. Over the last several years, litigation over the section
401 certifications for several high-profile infrastructure projects
have highlighted the need for the EPA to update its regulations to
provide a common framework for consistency with CWA section 401 and to
give project proponents, certifying authorities, and federal licensing
and permitting agencies additional clarity and regulatory certainty.
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\3\ The EPA co-administers section 404 with the Army Corps of
Engineers (the Corps).
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On April 10, 2019, the President issued Executive Order 13868,
entitled Promoting Energy Infrastructure and Economic Growth (the
Executive Order or Order), which directed the EPA to engage with
States, Tribes, and federal agencies and update the Agency's outdated
guidance and regulations, including the 1971 certification framework.
Pursuant to the Executive Order, on August 8, 2019, the EPA signed the
proposed rule ``Updating Regulations on Water Quality Certifications,''
and the proposal was published on August 22, 2019. 84 FR 44080. The 60-
day public comment period for the proposal closed on October 21, 2019.
Consistent with Executive Order 13868 and the 1972 CWA amendments, this
final rule provides an updated common framework that is consistent with
the Act and which seeks to increase predictability and timeliness.
The following sections provide an overview of section 401, relevant
court cases, outreach, and other actions that inform today's rule, as
well as provides responses to salient comments received on these
topics.
B. Executive Order 13868: Promoting Energy Infrastructure and Economic
Growth
The policy objective of the Executive Order is to encourage greater
investment in energy infrastructure in the United States by promoting
efficient federal licensing and permitting processes and reducing
regulatory uncertainty. The Executive Order identified the EPA's
outdated section 401 federal guidance and regulations as one source of
confusion and uncertainty hindering the development of energy
infrastructure.
Several commenters on the proposed rule argued that the EPA failed
to demonstrate that the rule would meet the objectives of the Executive
Order and the CWA, and they maintained that Presidential policy
objectives cannot override the CWA's plain language and Supreme Court
jurisprudence. One commenter stated that the EPA's actions under this
Executive Order were driven by political considerations and the desire
to undertake the rulemaking process as expeditiously as possible to
meet the President's purportedly unlawful directions as stated in the
Executive Order.
Other commenters asserted that the proposed rule is consistent with
the Executive Order. These commenters appreciated the administration's
recognition of the importance of energy infrastructure projects; the
[[Page 42212]]
administration's recognition of the economic impact the section 401
process has had on some important energy infrastructure projects; and
the EPA's review of the section 401 process. Such commenters supported
the Executive Order's goal of promoting economic growth and supported
the proposed rule's attempts to protect interstate and foreign commerce
from unconstitutional discrimination and unreasonable burdens and to
clearly define the steps and timing for section 401 certifications.
As discussed throughout this final rule preamble, the Agency has
determined that the final rule implements the fundamental statutory
objectives of the CWA, while also complying with the Executive Order.
The Agency disagrees with commenters who asserted that the rulemaking
process was inappropriately initiated or inappropriately directed by
the Executive Order. As noted above, the EPA's 1971 certification
regulations \4\ (36 FR 22487, Nov. 25, 1971; redesignated at 37 FR
21441, October 11, 1972; further redesignated at 44 FR 32899, June 7,
1979) had not been updated since they were promulgated in 1971,
pursuant to section 21(b) of the FWPCA. Additionally, at the time the
Executive Order was issued, the EPA's only guidance to the public on
section 401 implementation was an interim handbook (now rescinded)
entitled Clean Water Act Section 401 Water Quality Certification: A
Water Quality Protection Tool for States and Tribes (``Interim
Handbook''), which had not been updated since its release in 2010 and
therefore did not reflect the current case law interpreting CWA section
401.
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\4\ These regulations were redesignated in 1972 and 1979 under
the CWA, but no substantive change to the regulatory text has been
made since 1971 notwithstanding changes to the relevant statutory
text in the 1972 CWA. Therefore, throughout this final rule
preamble, the Agency refers to these regulatory provisions as the
``1971 certification regulations.''
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The Executive Order directed the EPA to review CWA section 401 and
the EPA's 1971 certification regulations and interim guidance, issue
new guidance to States, Tribes, and federal agencies within 60 days of
the Order, and propose (as appropriate and consistent with law) new
section 401 regulations within 120 days of the Order. The Executive
Order also directed the EPA to consult with States, Tribes, and
relevant federal agencies while reviewing its existing guidance and
regulations to identify areas that would benefit from greater clarity.
As part of this review, the Executive Order directed the EPA to
take into account the federalism considerations underlying section 401
and to consider the appropriate scope of water quality reviews and
conditions, the scope of information needed to act on a certification
request in a reasonable period of time, and expectations for reasonable
certification review times. Section 3.a. of Executive Order 13868,
Promoting Energy Infrastructure and Economic Growth. Following the
release of the EPA's new guidance document, the Executive Order
directed the EPA to lead an interagency review of all existing federal
regulations and guidance pertaining to section 401 to ensure
consistency with the EPA's new guidance and rulemaking efforts. The
Executive Order directs all federal agencies to update their existing
section 401 guidance within 90 days after publication of the EPA's new
guidance. Additionally, the Executive Order directs other federal
agencies to initiate rulemaking, if necessary, within 90 days of the
completion of the EPA's rulemaking, to ensure that their own CWA
section 401 regulations are consistent with the EPA's new rules and
with the Executive Order's policy goals. Although the Executive Order
focuses on section 401's impact on the energy sector, section 401
applies broadly to any proposed federally licensed or permitted
activity that may result in any discharge into a water of the United
States. Therefore, updates to the EPA's 1971 certification regulations
and guidance are relevant to all water quality certifications, not just
those related to energy sector projects.
Additional information on the EPA's State and Tribal engagement is
provided in section II.C of this notice, and additional information on
the EPA's updated guidance document is provided in section II.D of this
notice.
C. Summary of Stakeholder Engagement
On June 11, 2018, the Agency published its 2018 Spring Unified
Agenda of Regulatory and Deregulatory Actions \5\ announcing that the
Agency was considering, as a long-term action, the issuance of a notice
soliciting public comment on whether the section 401 certification
process would benefit from a rulemaking to promote nationwide
consistency and regulatory certainty for States, authorized Tribes, and
stakeholders. The Agency's stakeholder outreach and engagement efforts
since that announcement are summarized below.
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\5\ Available at https://www.reginfo.gov/public/do/eAgendaViewRule?pubId=201804&RIN=2040-AF86.
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On August 6, 2018, the Agency sent a letter to the Environmental
Council of the States, the Association of Clean Water Administrators,
the Association of State Wetland Managers, the National Tribal Water
Council, and the National Tribal Caucus identifying the Agency's
interest in engaging in potential clarifications to the section 401
process. The Agency discussed section 401 during several association
meetings and calls and received correspondence from several
stakeholders between Fall 2018 and Spring 2019. Early stakeholder
feedback received prior to the issuance of the Executive Order, the
August 6, 2018 letter described above, and the Agency's presentations
given between Fall 2018 and Spring 2019, may be found in the pre-
proposal recommendations docket (Docket ID No. EPA-HQ-OW-2018-0855).
Following release of the Executive Order, the EPA continued its
effort to engage with States and Tribes on how to increase clarity in
the section 401 certification process, including creating a new website
to provide information on section 401 and notifying State environmental
commissioners and Tribal environmental directors of a two-part webinar
series for States and Tribes. See www.epa.gov/cwa-401. The first
webinar was held on April 17, 2019, and discussed the Executive Order
and the EPA's next steps, and solicited feedback from States and Tribes
consistent with the Executive Order. Shortly thereafter, the EPA
initiated formal consultation efforts under Executive Order 13132 on
Federalism with States and Executive Order 13175 on Consultation and
Coordination with Indian Tribal Governments regarding provisions that
require clarification within section 401 of the CWA and related federal
regulations and guidance. The Agency held an initial federalism
consultation meeting on April 23, 2019, and sent notification of the
consultation period to States and Tribes on April 24, 2019.
Consultation ran through May 24, 2019, and the EPA opened a docket for
pre-proposal recommendations during this time period (Docket ID No.
EPA-HQ-OW-2018-0855). On May 7, 2019, and May 15, 2019, the EPA held
Tribal informational webinars, and on May 8, 2019, the EPA held an
informational webinar for both States and Tribes. See sections V.F and
V.G of this notice for further details on the Agency's federalism and
Tribal consultations. Questions and recommendations from the webinar
attendees are available in the pre-proposal docket (Docket ID No. EPA-
HQ-OW-2018-0855).
During the consultation period, the EPA participated in phone calls
and in-person meetings with inter-
[[Page 42213]]
governmental and Tribal associations, including the National Governors
Association and National Tribal Water Council. The EPA also attended
the EPA Region 9 Regional Tribal Operations Committee meeting on May
22, 2019, to solicit recommendations for the rulemaking effort. The EPA
engaged with federal agencies that issue licenses or permits subject to
section 401, including the United States Department of Agriculture, the
Federal Energy Regulatory Commission (FERC), the U.S. Army Corps of
Engineers (Corps), the Alcohol and Tobacco Tax and Trade Bureau, the
Nuclear Regulatory Commission, and the Bureau of Reclamation through
several meetings and phone calls to gain additional feedback from
federal partners.
At the webinars and meetings, the EPA provided a presentation and
sought input on aspects of section 401 and the 1971 certification
regulations that may benefit from clarification or require updating,
including timeframe, scope of certification review, and coordination
among certifying authorities, federal licensing or permitting agencies,
and project proponents. The EPA also requested input on issues and
process improvements for the Agency's consideration. Participant
recommendations from webinars, meetings, and the docket represent a
diverse range of interests, positions, and suggestions. Several themes
emerged throughout this process, including support for ongoing State
and Tribal engagement, support for retention of State and Tribal
authority, and suggestions for process improvements for CWA section 401
water quality certifications. The EPA considered all of this
information and stakeholder input during development of the proposed
rule, including all recommendations submitted to the pre-proposal
docket and feedback received prior to the initiation of, during, and
after the formal consultation period.
On August 8, 2019, the EPA signed the proposed rule, ``Updating
Regulations on Water Quality Certifications,'' and the proposal was
published on August 22, 2019. 84 FR 44080. The 60-day public comment
period for the proposal closed on October 21, 2019. After signing the
proposed rule, the EPA conducted a variety of stakeholder outreach
engagements on the contents of the proposed rule. For example, on
August 20, 2019, the EPA held a public webcast to present key elements
of the proposed rule (see https://www.youtube.com/watch?v=eBI7Mj5ucyM&feature=youtu.be). The EPA also held a public
hearing in Salt Lake City, Utah, on September 5 and 6, 2019, to hear
feedback from individuals from regulated industry sectors,
environmental and conservation organizations, State agencies, Tribal
governments, and private citizens. The EPA continued its engagement
throughout the public comment period with States and Tribes through in-
person meetings with representatives in Salt Lake City, Utah, and
Chicago, Illinois. During these meetings, the Agency provided an
overview of the proposed rule, responded to clarifying questions from
participants, discussed implementation considerations, and heard
comments reflecting a range of positions on the proposal and varying
interpretations of CWA section 401. A transcript of the public hearing
and related materials and summaries of the State and Tribal meetings
can be found in the docket for the final rule. At the request of
individual Tribes, the EPA also held staff-level and leader-to-leader
meetings with those Tribes.
A few commenters commended the EPA for its outreach efforts during
the rule development process. Other commenters asserted that the EPA
held an abbreviated public engagement process. Some commenters asserted
that the EPA's consultation efforts with States, Tribes and local
governments during the rulemaking process were inadequate. The Agency
disagrees with commenters that its consultation with States or Tribes
was inadequate. As discussed in section II.C, section V.F, and section
V.G of this notice, the Agency consulted with States, Tribes, and local
governments throughout the rulemaking process. See also the Agency's
response to comments document in the docket for this final rule for
further response on the Agency's outreach efforts.
In developing the final rule, the EPA reviewed and considered more
than 125,000 comments on the proposed rule from a broad spectrum of
interested parties. Commenters provided a wide range of feedback on
various aspects of the proposal, including the legal basis for the
proposed rule and the Agency's proposed definitions and certification
procedures. Commenters also explained their views on how the proposal
may impact project proponents, certifying authorities, and federal
licensing and permitting agencies. The Agency summarizes the most
salient public comments received on the proposed rule and provides
responses in the applicable sections of this final rule preamble. A
separate response to comments document is also available in the docket
for the final rule at Docket ID No. EPA-HQ-OW-2019-0405.
D. Guidance Document
Pursuant to the Executive Order, the Agency released updated
section 401 guidance on June 7, 2019 (``the 2019 Guidance''), available
at https://www.epa.gov/cwa-401/clean-water-act-section-401-guidance-federal-agencies-states-and-authorized-tribes. Coincident with the
release of the 2019 Guidance, the EPA rescinded the 2010 Interim
Handbook on section 401 water quality certification. The Interim
Handbook had not been updated or revised since its release in 2010, had
never been finalized, and did not reflect current case law interpreting
CWA section 401.
The 2019 Guidance provided information and recommendations for
implementing the substantive and procedural requirements of section
401, consistent with the areas of focus in the Executive Order. More
specifically, the 2019 Guidance focused on aspects of the certification
process, including the timeline for review and decision-making and the
appropriate scope of review and conditions. Additionally, the 2019
Guidance provided recommendations for how federal licensing and
permitting agencies, States, and Tribes can better coordinate to
improve the section 401 certification process. The emphasis on early
coordination and collaboration to increase process efficiency aligns
with other agency directives under Executive Order 13807, Establishing
Discipline and Accountability in the Environmental Review and
Permitting Process for Infrastructure Projects, which established the
``One Federal Decision'' policy. For major infrastructure projects,
Executive Order 13807 directs federal agencies to use a single,
coordinated process for compliance with the National Environmental
Policy Act (NEPA), 42 U.S.C. 4321 et seq., and emphasizes advance
coordination to streamline federal permitting actions.
Some commenters asserted the 2019 Guidance is inconsistent with 50
years of practice and that it created confusion and uncertainty. Other
commenters disagreed with the 2019 Guidance's limitations on timing of
section 401 certifications and the scope of information that States may
require to fully evaluate section 401 certification requests. Several
commenters stated that the 2019 Guidance was inappropriately issued
prior to rulemaking and should be withdrawn, and they asserted that
either the Interim Handbook should be reinstated or the 2019 Guidance
should be modified. Some commenters suggested that the issuance of the
2019 Guidance before rule finalization indicates that the EPA has
[[Page 42214]]
predetermined the outcome of the rulemaking process, contrary to the
Administrative Procedure Act (APA), and therefore that the guidance
should be rescinded or superseded by new guidance consistent with the
final rule.
The Agency disagrees with commenters who asserted the 2019 Guidance
was unnecessary. As discussed above and as outlined in the Executive
Order, the Interim Handbook created regulatory uncertainty and
confusion because it no longer reflected the current case law
interpreting CWA section 401, nor had it been updated or finalized. The
2019 Guidance was intended only to facilitate consistent implementation
of section 401 and the 1971 certification regulations during this
rulemaking process, and the Agency disagrees with commenters who
suggested the 2019 Guidance reflected a predetermined outcome of this
rulemaking process. The 2019 Guidance addressed the appropriate
timeline for a State's or Tribe's review and section 401 certification
decision-making and the appropriate scope of a State's or Tribe's
certification review and conditions based on the EPA's 1971
certification regulations. The final rule, on the other hand, is based
on the Agency's holistic review of the 1972 statutory language,
addresses a number of additional topics, and reflects and responds to
public comments.
Some commenters said the 2019 Guidance should be retained but
updated once the proposed rule is finalized. Other commenters stated
the 2019 Guidance should be withdrawn once the proposed rule is
finalized. One commenter asserted that additional guidance may be
appropriate, but that the need for guidance depends on the degree of
clarity in the final rule.
Coincident with issuing this final rule, the EPA is rescinding the
2019 Guidance. The EPA continues to support and encourage the extent of
coordination recommended in the 2019 Guidance, including
recommendations for project proponents, certifying authorities, and
federal licensing and permitting authorities to engage in substantive
discussions as early as possible, and for all parties to operate in
good faith throughout the certification process. However, the EPA has
concluded that retaining the 2019 Guidance after issuing this final
rule could cause confusion. The Agency has determined that the final
rule provides sufficient additional specificity and clarity on the
issues discussed in the 2019 Guidance to both meet the expectations of
the Executive Order and render the 2019 Guidance unnecessary. The EPA
retains the option to develop new guidance to facilitate implementation
of this final rule should the need arise.
E. Effect on Existing Federal, State, and Tribal Laws
According to the Executive Order, the EPA is to lead an interagency
effort to review and examine existing federal guidance and regulations
``for consistency with EPA guidance and rulemaking.'' Section 3.d. of
the Executive Order provides that, within 90 days after the EPA issues
its final section 401 regulations, ``if necessary, the heads of each
401 implementing Agency shall initiate a rulemaking to ensure that
their respective agencies' regulations are consistent with'' the EPA's
final section 401 regulations and ``the policies set forth in section 2
of [the Executive Order].'' Pursuant to the Executive Order, the other
federal agencies that issue licenses or permits subject to the
certification requirements of section 401 are expected to ensure that
any regulations governing their own processing, disposition, and
enforcement of section 401 certifications are consistent with the EPA's
final regulations and the policies articulated in section 2 of the
Executive Order. The EPA engaged with other section 401 implementing
agencies before and after the proposed rule was issued, and the EPA
considered federal agency feedback in developing the proposal and this
final rule. This final rule preamble includes suggested recommendations
for federal agencies as they update or draft their section 401
implementing regulations. For instance, section III.F.2.a of this
notice encourages federal agencies to establish in their regulations a
minimum reasonable period of time for State and Tribal action to
provide notice and regulatory certainty to project proponents and
certifying authorities about applicable deadlines. However, these are
only recommendations and the federal agencies themselves must determine
how to update their own regulations to ensure consistency with this
final rule and efficient administration of their license and permit
programs. For its part, the EPA plans to review its National Pollutant
Discharge Elimination System (NPDES) regulations to ensure its own
permitting program certification regulations are consistent with this
final rule.
In addition to conforming changes that federal agencies may make to
federal regulations that implement section 401, it is likely that
States and Tribes will want to evaluate their existing certification
statutes or regulations to ensure consistency with the EPA's final
rule.
Certain commenters stated that the proposed rule would not be
consistent with existing State law, such as State statutes or
regulations regarding notice and comment, completeness, impact and
degradation avoidance, and mitigation. Many of these commenters were
particularly concerned that existing State-enacted procedures require
more information and time for State certification review and action
than provided by the proposed rule. A few commenters challenged the
EPA's authority to dictate State procedures and stated that the EPA
should provide flexibility for State regulatory procedures in this
rulemaking. Several commenters maintained that the proposed rule would
require statutory and regulatory changes on the State level and
encouraged the EPA to give States sufficient time to adapt by providing
an extended effective date for the new rule. One commenter asserted
that if States were not provided additional time to assess the new
rule's impact on their State laws and regulations, the new rule could
require the States to either violate their own laws or deny more
section 401 certifications, which could result in litigation and
further delay for projects subject to section 401.
Several commenters asserted that the proposed rule would make State
and Tribal section 401 programs less efficient and would lead to
national inconsistency. Several commenters asserted that the EPA's
interpretation of the CWA and case law will result in legal challenges
to the final rule, which would in turn lead to confusion and delays in
its implementation contrary to the intent of the Executive Order.
Several commenters also indicated that because States may need to
change their statutes and regulations in response to the final rule,
litigation will ensue over those State changes resulting in further
regulatory uncertainty, defeating the intent of the proposal to make
the section 401 process more efficient.
The EPA has considered and appreciates the concerns raised by these
commenters and is mindful that the lack of clear federal guidance and
implementation of CWA section 401 following enactment of the 1972 CWA
amendments has resulted in a patchwork of State and Tribal programs
with different timing, request, and review requirements for water
quality certifications. However, the EPA's decades-long delay in
promulgating section 401 implementing regulations does not undercut the
EPA's authority and obligation to promulgate
[[Page 42215]]
implementing regulations for this important CWA program. The EPA's
delay in promulgating regulations also does not change the 1972 CWA
amendment's statutory language or underlying congressional intent, nor
does it allow for States or Tribes to implement water quality
certification programs that exceed the authority granted by Congress.
The EPA acknowledges that some States and Tribes may update their
regulations to be consistent with the procedural and substantive
elements of this final rule. Regulatory consistency across federal,
State, and Tribal governments with respect to issues like timing,
waiver, and scope of section 401 reviews and conditions would help
ensure that section 401 is implemented nationally in an efficient,
effective, and transparent manner. Although such updates may have an
initial burden on certifying authorities, they will ultimately result
in more efficient certification and federal permitting processes. The
Agency will face a similar task in updating its own NPDES regulations
after this final rule is published, but will similarly benefit from
more efficient, effective and transparent certification processes under
updated regulations. Making the rule effective 30 days after
publication in the Federal Register would be consistent with applicable
law; however, the Agency is establishing the effective date 60 days
after publication of the final rule in the Federal Register. This
additional time will allow EPA to develop implementation materials for
States, Tribes and federal agencies, as necessary or appropriate. The
Agency stands ready to provide technical assistance to States, Tribes,
and federal agencies seeking to update their certification procedures,
guidance or regulations.
By promulgating these long-overdue regulations, it is not the EPA's
intent that States or Tribes violate either federal, State, or Tribal
law pending completion of updates to applicable State or Tribal law.
The Agency is aware that most if not all States have emergency
rulemaking authorities that may help avoid such outcomes. Furthermore,
as States and Tribes enact conforming changes to their existing laws,
pursuant to section 401(b), the EPA remains ready and willing to
provide any necessary technical assistance.
A few commenters supporting the proposed rule acknowledged the
EPA's desire to preserve State sovereignty and principles of
cooperative federalism while at the same time creating greater national
consistency in both federal and State regulations implementing section
401. One commenter observed that the proposed rule would make the
regulations consistent with the intent of the 1972 CWA amendments while
allowing the States to retain their primary roles in the section 401
water quality certification process. Some commenters stated the current
regulations have allowed States to impose conditions beyond the
appropriate scope set forth in the statute, leading to lengthy delays
in the certification process and resulting in a certification process
that is ill-defined, confusing in scope, and lacking clear deadlines. A
number of commenters asserted that the proposed rule would promote
regulatory certainty, help streamline the federal permitting process
for critical infrastructure development, enhance the ability of project
proponents to plan for construction, and facilitate early and
constructive engagement between project proponents, States or
authorized Tribes, and federal agencies to ensure that proposed
projects will be protective of local water quality.
The EPA acknowledges that although many certifications reflect an
appropriately limited interpretation of the purpose and scope of
section 401 and are issued without controversy, some certifying
authorities have implemented water quality certification programs that
exceed the boundaries set by Congress in section 401. After considering
all of the comments received, the Agency has made several changes,
described further below, to provide greater clarity and regulatory
certainty in the final rule.
F. Legal Background
This final rule concludes the EPA's first comprehensive effort to
promulgate federal rules governing the implementation of CWA section
401. The Agency's 1971 water quality certification regulations pre-
dated the 1972 CWA amendments. This final rule therefore provides the
EPA's first holistic analysis of the statutory text, legislative
history,\6\ and relevant case law informing the implementation of the
CWA section 401 program by the Agency and its federal, State, and
Tribal partners. The final rule, while focused on the relevant
statutory provisions and case law interpreting those provisions, is
informed by the Agency's expertise developed over nearly 50 years of
implementing the CWA and policy considerations where necessary to
address certain ambiguities in the statutory text. The following
sections describe the basic operational construct and history of the
1972 CWA amendments, how section 401 fits within that construct, and
certain core administrative and legal principles that provide the
foundation for this final rule.
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\6\ The EPA observes that some legislative history related to
section 401 is internally inconsistent. When interpreting section
401 for purposes of this rulemaking, the Agency has generally
accorded such inconsistent and ambiguous legislative history less
weight.
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1. The Clean Water Act
Congress amended the CWA \7\ in 1972 to address longstanding
concerns regarding the quality of the nation's waters and the federal
government's ability to address those concerns under existing law.
Prior to 1972, responsibility for controlling and redressing water
pollution in the nation's waters largely fell to the Corps under the
Rivers and Harbors Act of 1899 (RHA). While much of that statute
focused on restricting obstructions to navigation on the nation's major
waterways, section 13 of the RHA made it unlawful to discharge refuse
``into any navigable water of the United States, or into any tributary
of any navigable water from which the same shall float or be washed
into such navigable water.'' \8\ 33 U.S.C. 407. Congress had also
enacted the Water Pollution Control Act of 1948, Public Law 80-845, 62
Stat. 1155 (June 30, 1948), to address interstate water pollution, and
subsequently amended that statute in 1956 (giving the statute its
current formal name), in 1961, and in 1965. The early versions of the
CWA promoted the development of pollution abatement programs, required
States to develop water quality standards, and authorized the federal
government to bring enforcement actions to abate water pollution.
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\7\ The FWPCA has been commonly referred to as the CWA following
the 1977 amendments to the FWPCA. Public Law 95-217, 91 Stat. 1566
(1977). For ease of reference, the Agency will generally refer to
the FWPCA in this notice as the CWA or the Act.
\8\ The term ``navigable water of the United States'' is a term
of art used to refer to a water subject to federal jurisdiction
under the RHA. See, e.g., 33 CFR 329.1. The term is not synonymous
with the phrase ``waters of the United States'' under the CWA, see
id., and the general term ``navigable waters'' has different
meanings depending on the context of the statute in which it is
used. See, e.g., PPL Montana, LLC v. Montana, 132 S. Ct. 1215, 1228
(2012).
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These earlier statutory frameworks, however, proved challenging for
regulators, who often worked backwards from an overly-polluted waterway
to determine which dischargers and which sources of pollution may be
responsible. See EPA v. State Water Resources Control Bd., 426 U.S.
200, 204 (1976). In fact, Congress determined that the prior
[[Page 42216]]
statutes were inadequate to address the decline in the quality of the
nation's waters, see City of Milwaukee v. Illinois, 451 U.S. 304, 310
(1981), so Congress performed a ``total restructuring'' and ``complete
rewriting'' of the existing statutory framework of the Act in 1972, id.
at 317 (quoting legislative history of 1972 amendments). That
restructuring resulted in the enactment of a comprehensive scheme
designed to prevent, reduce, and eliminate pollution in the nation's
waters generally, and to regulate the discharge of pollutants into
waters of the United States specifically. See, e.g., S.D. Warren Co. v.
Maine Bd. of Envtl. Prot., 547 U.S. 370, 385 (2006) (``[T]he Act does
not stop at controlling the `addition of pollutants,' but deals with
`pollution' generally[.]'').
The objective of the new statutory scheme was ``to restore and
maintain the chemical, physical, and biological integrity of the
Nation's waters.'' 33 U.S.C. 1251(a). In order to meet that objective,
Congress declared two national goals: (1) ``that the discharge of
pollutants into the navigable waters be eliminated by 1985;'' and (2)
``that wherever attainable, an interim goal of water quality which
provides for the protection and propagation of fish, shellfish, and
wildlife and provides for recreation in and on the water be achieved by
July 1, 1983 . . . .'' Id. at 1251(a)(1)-(2).
Congress established several key policies that direct the work of
the Agency to effectuate those goals. For example, Congress declared as
a national policy ``that the discharge of toxic pollutants in toxic
amounts be prohibited; . . . that Federal financial assistance be
provided to construct publicly owned waste treatment works; . . . that
areawide waste treatment management planning processes be developed and
implemented to assure adequate control of sources of pollutants in each
State; . . . [and] that programs for the control of nonpoint sources of
pollution be developed and implemented in an expeditious manner so as
to enable the goals of this Act to be met through the control of both
point and nonpoint sources of pollution.'' Id. at 1251(a)(3)-(7).
Congress provided a major role for the States in implementing the
CWA, balancing the traditional power of States to regulate land and
water resources within their borders with the need for a national water
quality regulation. For example, the statute highlighted ``the policy
of the Congress to recognize, preserve, and protect the primary
responsibilities and rights of States to prevent, reduce, and eliminate
pollution'' and ``to plan the development and use . . . of land and
water resources . . . .'' Id. at 1251(b). Congress also declared as a
national policy that States manage the major construction grant program
and implement the core permitting programs authorized by the statute,
among other responsibilities. Id. Congress added that ``[e]xcept as
expressly provided in this Act, nothing in this Act shall . . . be
construed as impairing or in any manner affecting any right or
jurisdiction of the States with respect to the waters (including
boundary waters) of such States.'' Id. at 1370.\9\ Congress also
pledged to provide technical support and financial aid to the States
``in connection with the prevention, reduction, and elimination of
pollution.'' Id. at 1251(b).
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\9\ 33 U.S.C. 1370 also prohibits states with EPA-approved CWA
programs from adopting any limitations, prohibitions, or standards
that are less stringent than required by the CWA.
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To carry out these policies, Congress broadly defined ``pollution''
to mean ``the man-made or man-induced alteration of the chemical,
physical, biological, and radiological integrity of water,'' id. at
1362(19), to parallel the broad objective of the Act ``to restore and
maintain the chemical, physical, and biological integrity of the
Nation's waters.'' Id. at 1251(a). Congress then crafted a non-
regulatory statutory framework to provide technical and financial
assistance to the States to prevent, reduce, and eliminate pollution in
the nation's waters generally. See, e.g., id. at 1256(a) (authorizing
the EPA to issue ``grants to States and to interstate agencies to
assist them in administering programs for the prevention, reduction,
and elimination of pollution''); see also 84 FR 56626, 56632 (Oct. 22,
2019) (discussing non-regulatory program provisions); 85 FR 22250,
22253 (April 21, 2020) (same).
In addition to the Act's non-regulatory measures to control
pollution of the nation's waters, Congress created a federal regulatory
program designed to address the discharge of pollutants into a subset
of those waters identified as ``the waters of the United States.'' See
33 U.S.C. 1362(7). Section 301 contains the key regulatory mechanism:
``Except as in compliance with this section and sections 302, 306, 307,
318, 402, and 404 of this Act, the discharge of any pollutant by any
person shall be unlawful.'' Id. at 1311(a). A ``discharge of a
pollutant'' is defined to include ``any addition of any pollutant to
navigable waters from any point source,'' such as a pipe, ditch or
other ``discernible, confined and discrete conveyance.'' Id. at
1362(12), (14). The term ``pollutant'' means ``dredged spoil, solid
waste, incinerator residue, sewage, garbage, sewage sludge, munitions,
chemical wastes, biological materials, radioactive materials, heat,
wrecked or discarded equipment, rock, sand, cellar dirt and industrial,
municipal, and agricultural waste discharged into water.'' Id. at
1362(6). Thus, it is unlawful to discharge pollutants into waters of
the United States from a point source unless the discharge is in
compliance with certain enumerated sections of the CWA, including by
obtaining authorizations pursuant to the section 402 NPDES permit
program or the section 404 dredged or fill material permit program. See
id. at 1342, 1344. Congress therefore intended to achieve the Act's
objective ``to restore and maintain the chemical, physical, and
biological integrity of the Nation's waters'' by addressing pollution
of all waters via non-regulatory means and federally regulating the
discharge of pollutants to the subset of waters identified as
``navigable waters.'' \10\
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\10\ Fundamental principles of statutory interpretation support
the Agency's recognition of a distinction between ``nation's
waters'' and ``navigable waters.'' As the Supreme Court has
observed, ``[w]e assume that Congress used two terms because it
intended each term to have a particular, nonsuperfluous meaning.''
Bailey v. United States, 516 U.S. 137, 146 (1995) (recognizing the
canon of statutory construction against superfluity). Further, ``the
words of a statute must be read in their context and with a view to
their place in the overall statutory scheme.'' FDA v. Brown &
Williamson Tobacco Corp., 529 U.S. 120, 133 (2000) (internal
quotation marks and citation omitted); see also United Savings Ass'n
v. Timbers of Inwood Forest Associates, 484 U.S. 365, 371
(``Statutory construction . . . is a holistic endeavor. A provision
that may seem ambiguous in isolation is often clarified by the
remainder of the statutory scheme--because the same terminology is
used elsewhere in a context that makes its meaning clear[.]'')
(citation omitted). The non-regulatory sections of the CWA reveal
Congress' intent to restore and maintain the integrity of the
nation's waters using federal assistance to support state and local
partnerships to control pollution in the nation's waters in addition
to a federal regulatory prohibition on the discharge of pollutants
into the navigable waters. If Congress intended the terms to be
synonymous, it would have used identical terminology. Instead,
Congress chose to use separate terms, and the Agency is instructed
by the Supreme Court to presume Congress did so intentionally. For
further discussion, see 84 FR at 56632 and 85 FR at 22253.
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Within the regulatory programs established by the Act, two
principal components focus on ``achieving maximum `effluent
limitations' on `point sources,' as well as achieving acceptable water
quality standards,'' and the development of the NPDES permitting
program that imposes specific discharge limitations for regulated
entities. EPA v. State Water Resources Control Bd., 426 U.S. at 204.
Together these components provide a framework for the Agency to focus
on
[[Page 42217]]
reducing or eliminating discharges while creating accountability for
each regulated entity that discharges into a waterbody, facilitating
greater enforcement and overall achievement of the CWA water quality
goals. Id.; see Oregon Natural Desert Association v. Dombeck, 172 F.3d
1092, 1096 (9th Cir. 1998) (observing that 1972 amendments ``largely
supplanted'' earlier versions of CWA ``by replacing water quality
standards with point source effluent limitations'').
Under this statutory scheme, the States \11\ are authorized to
assume program authority for issuing section 402 and 404 permits within
their borders, subject to certain limitations. 33 U.S.C. 1342(b),
1344(g). States are also responsible for developing water quality
standards for ``waters of the United States'' within their borders and
reporting on the condition of those waters to the EPA every two years.
Id. at 1313, 1315. States must develop total maximum daily loads
(TMDLs) for waters that are not meeting established CWA water quality
standards and must submit those TMDLs to the EPA for approval. Id. at
1313(d). And, central to this final rule, States under CWA section 401
have authority to grant, grant with conditions, deny, or waive water
quality certifications for every federal license or permit issued
within their borders that may result in a discharge into waters of the
United States. Id. at 1341. These same regulatory authorities can be
assumed by Indian Tribes under section 518 of the CWA, which authorizes
the EPA to treat eligible Tribes with reservations in a similar manner
to States (referred to as ``treatment as States'' or TAS) for a variety
of purposes, including administering the principal CWA regulatory
programs. Id. at 1377(e). In addition, States and Tribes retain
authority to protect and manage the use of those waters that are not
waters of the United States under the CWA. See, e.g., id. at 1251(b),
1251(g), 1370, 1377(a).
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\11\ The CWA defines ``state'' as ``a State, the District of
Columbia, the Commonwealth of Puerto Rico, the Virgin Islands, Guam,
American Samoa, the Commonwealth of the Northern Mariana Islands,
and the Trust Territory of the Pacific Islands.'' 33 U.S.C. 1362(3).
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In enacting section 401, Congress recognized that where States and
Tribes do not have direct permitting authority (because they do not
have section 402 or 404 program authorization or where Congress has
preempted a regulatory field, e.g., under the Federal Power Act), they
may still play a valuable role in protecting the water quality of
federally regulated waters within their borders in collaboration with
federal agencies. Under section 401, a federal agency may not issue a
license or permit for an activity that may result in a discharge into
waters of the United States, unless the appropriate authority provides
a section 401 certification or waives its ability to do so. The
authority to certify a federal license or permit lies with the agency
(the certifying authority) that has jurisdiction over the location of
the discharge to the receiving water of the United States. Id. at
1341(a)(1). Examples of federal licenses or permits potentially subject
to section 401 certification include, but are not limited to, CWA
section 402 NPDES permits in States where the EPA administers the
permitting program; CWA section 404 and RHA sections 9 and 10 permits
issued by the Corps; bridge permits issued by the U.S. Coast Guard
(USCG); and hydropower and pipeline licenses issued by the Federal
Energy Regulatory Commission (FERC).
Under section 401, a certifying authority may grant, grant with
conditions, deny, or waive certification in response to a request from
a project proponent. The certifying authority determines whether the
potential discharge from the proposed activity will comply with the
applicable provisions of sections 301, 302, 303, 306, and 307 of the
CWA and any other appropriate requirement of state law. Id. Certifying
authorities may also add to a certification ``any effluent limitations
and other limitations, and monitoring requirements'' necessary to
assure compliance. Id. at 1341(d). These additional provisions must
become conditions of the federal license or permit should it be issued.
Id. A certifying authority may deny certification if it is unable to
determine that the discharge from the proposed activity will comply
with the applicable sections of the CWA and appropriate requirements of
state law. If a certifying authority denies certification, the federal
license or permit may not be issued. Id. at 1341(a)(1). A certifying
authority may waive certification by ``fail[ing] or refus[ing] to act
on a request for certification, within a reasonable period of time
(which shall not exceed one year) after receipt of such request.'' Id.
With the exception of section 401, the EPA has promulgated
regulatory programs designed to ensure that the CWA is implemented as
Congress intended in the 1972 CWA.\12\ This includes pursuing the
overall ``objective'' of the CWA to ``restore and maintain the
chemical, physical, and biological integrity of the Nation's waters,''
id. at 1251(a), while implementing the specific ``policy'' directives
from Congress to, among other things, ``recognize, preserve, and
protect the primary responsibilities and rights of States to prevent,
reduce, and eliminate pollution'' and ``to plan the development and use
. . . of land and water resources.'' Id. at 1251(b); see also Webster's
II, New Riverside University Dictionary (1994) (defining ``policy'' as
a ``plan or course of action, as of a government[,] designed to
influence and determine decisions and actions;'' an ``objective'' is
``something worked toward or aspired to: Goal''). The Agency therefore
recognizes a distinction between the specific word choices of Congress,
which reflect the need to develop regulatory programs that aim to
accomplish the goals of the Act while implementing the specific policy
directives of Congress. For further discussion of these principles, see
84 FR 56638-39 and 85 FR at 22269-70.
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\12\ As noted in section II.F.3 of this notice, the EPA's 1971
certification regulations were promulgated prior to the 1972 CWA
Amendments and had not been updated to reflect the current statutory
text until this final rule was developed.
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Congress' authority to regulate navigable waters, including waters
subject to CWA section 401 water quality certification, derives from
its power to regulate the ``channels of interstate commerce'' under the
Commerce Clause. Gibbons v. Ogden, 22 U.S. (9 Wheat.) 1 (1824); see
also United States v. Lopez, 514 U.S. 549, 558-59 (1995) (describing
the ``channels of interstate commerce'' as one of three areas of
congressional authority under the Commerce Clause). The Supreme Court
explained in Solid Waste Agency of Northern Cook County v. U.S. Army
Corps of Engineers (SWANCC) that the term ``navigable'' indicates
``what Congress had in mind as its authority for enacting the Clean
Water Act: Its traditional jurisdiction over waters that were or had
been navigable in fact or which could reasonably be so made.'' 531 U.S.
159, 172 (2001). The Court further explained that nothing in the
legislative history of the Act provides any indication that ``Congress
intended to exert anything more than its commerce power over
navigation.'' Id. at 168 n.3. The Supreme Court, however, has
recognized that Congress intended ``to exercise its powers under the
Commerce Clause to regulate at least some waters that would not be
deemed `navigable' under the classical understanding of that term.''
United States v. Riverside Bayview Homes, 474 U.S. 121, 133 (1985); see
also SWANCC, 531 U.S. at 167.
[[Page 42218]]
The classical understanding of the term navigable was first
articulated by the Supreme Court in The Daniel Ball:
Those rivers must be regarded as public navigable rivers in law
which are navigable in fact. And they are navigable in fact when
they are used, or are susceptible of being used, in their ordinary
condition, as highways of commerce, over which trade and travel are
or may be conducted in the customary modes of trade and travel on
water. And they constitute navigable waters of the United States
within the meaning of the Acts of Congress, in contradistinction
from the navigable waters of the States, when they form in their
ordinary condition by themselves, or by uniting with other waters, a
continued highway over which commerce is or may be carried on with
other States or foreign countries in the customary modes in which
such commerce is conducted by water.
77 U.S. (10 Wall.) 557, 563 (1871). Over the years, this
traditional test has been expanded to include waters that had been used
in the past for interstate commerce, see Economy Light & Power Co. v.
United States, 256 U.S. 113, 123 (1921), and waters that are
susceptible for use with reasonable improvement, see United States v.
Appalachian Elec. Power Co., 311 U.S. 377, 407-10 (1940).
By the time the 1972 CWA amendments were enacted, the Supreme Court
had held that Congress' authority over the channels of interstate
commerce was not limited to regulation of the channels themselves but
could extend to activities necessary to protect the channels. See
Oklahoma ex rel. Phillips v. Guy F. Atkinson Co., 313 U.S. 508, 523
(1941) (``Congress may exercise its control over the non-navigable
stretches of a river in order to preserve or promote commerce on the
navigable portions.''). The Supreme Court also had clarified that
Congress could regulate waterways that formed a part of a channel of
interstate commerce, even if they are not themselves navigable or do
not cross State boundaries. See Utah v. United States, 403 U.S. 9, 11
(1971). Congress therefore intended to assert federal regulatory
authority over more than just waters traditionally understood as
navigable, while rooting that authority in ``its commerce power over
navigation.'' SWANCC, 531 U.S. at 168 n.3.
The EPA recognizes and respects the primary responsibilities and
rights of States to regulate their land and water resources, as
reflected in CWA section 101(b). 33 U.S.C. 1251(b), see also id. at
1370. The oft-quoted objective of the CWA to ``restore and maintain the
chemical, physical, and biological integrity of the Nation's waters,''
id. at 1251(a), must be implemented in a manner consistent with
Congress' policy directives. The Supreme Court long ago recognized the
distinction between waters subject to federal authority, traditionally
understood as navigable, and those waters ``subject to the control of
the States.'' The Daniel Ball, 77 U.S. (10 Wall.) 557, 564-65 (1870).
Over a century later, the Supreme Court in SWANCC reaffirmed the
States' ``traditional and primary power over land and water use.'' 531
U.S. at 174. Ensuring that States retain authority over their land and
water resources helps carry out the overall objective of the CWA and
ensures that the Agency is giving full effect and consideration to the
entire structure and function of the Act. See, e.g., Hibbs v. Winn, 542
U.S. 88, 101 (2004) (``A statute should be construed so that effect is
given to all its provisions, so that no part will be inoperative or
superfluous, void or insignificant.'') (citation omitted); see also
Rapanos v. United States, 547 U.S. 715, 755-56 (2006) (Scalia, J.,
plurality) (``[C]lean water is not the only purpose of the statute. So
is the preservation of primary state responsibility for ordinary land-
use decisions. 33 U.S.C. 1251(b).'') (original emphasis).
In summary, Congress relied on its authority under the Commerce
Clause when it enacted the CWA and intended to assert federal authority
over more than just waters traditionally understood as navigable, but
it limited the exercise of that authority to ``its commerce power over
navigation.'' SWANCC, 531 U.S. at 168 n.3. The Court in SWANCC found
that ``[r]ather than expressing a desire to readjust the federal-state
balance [in a manner that would result in a significant impingement of
the States' traditional and primary power over land and water use],
Congress chose [in the CWA] to `recognize, preserve, and protect the
primary responsibilities and rights of States . . . to plan the
development and use . . . of land and water resources . . .'' Id. at
174 (quoting 33 U.S.C. 1251(b)). The Court found no clear statement
from Congress that it had intended to permit federal encroachment on
traditional State power and construed the CWA to avoid the significant
constitutional questions related to the scope of federal authority
authorized therein. Id. at 173-74. That is because the Supreme Court
has instructed that ``[w]here an administrative interpretation of a
statute invokes the outer limits of Congress' power, we expect a clear
indication that Congress intended that result.'' Id. at 172. The Court
has further stated that this is particularly true ``where the
administrative interpretation alters the federal-state framework by
permitting federal encroachment upon a traditional state power.'' Id.
at 173; see also Will v. Michigan Dept. of State Police, 491 U.S. 58,
65 (1989) (``[I]f Congress intends to alter the `usual constitutional
balance between the States and the Federal Government,' it must make
its intention to do so `unmistakably clear in the language of the
statute.' '') (quoting Atascadero State Hospital v. Scanlon, 473 U.S.
234, 242 (1985)); Gregory v. Ashcroft, 501 U.S. 452, 461 (1991)
(``[The] plain statement rule . . . acknowledg[es] that the States
retain substantial sovereign powers under our constitutional scheme,
powers with which Congress does not readily interfere''). This means
that the executive branch's authority under the CWA, while broad, is
not unlimited, and the waters to which CWA regulatory programs apply
must necessarily respect those limits. For further discussion of these
principles, see 84 FR 56655 and 85 FR at 22264. See section II.F.6 of
this final rule preamble for a summary of public comments and Agency
responses on interstate commerce.
In some cases, CWA section 401 denials have been challenged on
grounds that the denial improperly interfered with interstate commerce.
See, e.g., Lighthouse Resources, Inc. v. Inslee, No. 3:18-cv-5005,
Complaint at ]] 206-210; ]] 224-248 (W.D. Wash. filed Jan. 8, 2018)
(alleging that State's denial of section 401 certification violated
dormant Commerce Clause and dormant foreign Commerce Clause). In Lake
Carriers Association v. EPA, 652 F.3d 1 (D.C. Cir. 2011), the court of
appeals found that the section 401 statutory scheme of delegation of
authority to States, by itself, does not create an impermissible burden
on interstate commerce; however, the court signaled that certain
actions taken by States pursuant to section 401 could be subject to
dormant Commerce Clause challenges. 652 F.3d at 10 (``If [petitioners]
believe that the certification conditions imposed by any particular
state pose an inordinate burden on their operations, they may challenge
those conditions in that state's courts. If [petitioners] believe that
a particular state's law imposes an unconstitutional burden on
interstate commerce, they may challenge that law in federal (or state)
court.'').
2. The EPA's Role in Implementing Section 401
The EPA, as the federal agency charged with administering the CWA,
is responsible for developing regulations and guidance to ensure
effective implementation of all CWA programs,
[[Page 42219]]
including section 401.\13\ In addition to administering the statute and
promulgating implementing regulations, the Agency has several other
roles under section 401.
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\13\ See 33 U.S.C. 1251(d) (``Except as otherwise expressly
provided in this chapter, the Administrator of the Environmental
Protection Agency . . . shall administer this chapter.''); id. at
1361(a); Mayo Found. for Medical Educ. and Res. v. United States,
562 U.S. 44, 45 (2011); Hoopa Valley Tribe v. FERC, 913 F.3d 1099,
1104 (D.C. Cir. 2019); Ala. Rivers Alliance v. FERC, 325 F.3d 290,
296-97 (D.C. Cir. 2003); Cal. Trout v. FERC, 313 F.3d 1131, 1133
(9th Cir. 2002); Am. Rivers, Inc. v. FERC, 129 F. 3d 99, 107 (2d
Cir. 1997).
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The EPA acts as the section 401 certification authority under two
circumstances. First, the EPA will certify on behalf of a State or
Tribe where the jurisdiction in which the discharge will originate does
not itself have certification authority. 33 U.S.C. 1341(a)(1). In
practice, this results in the EPA certifying on behalf of the many
Tribes that do not have TAS authority for section 401. Second, the EPA
will act as the certifying authority where the discharge would
originate on lands of exclusive federal jurisdiction.\14\
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\14\ The federal government may obtain exclusive federal
jurisdiction over lands in multiple ways, including where the
federal government purchases lands consistent with article 1,
section 8, clause 17 of the U.S. Constitution and a state chooses to
cede jurisdiction to the federal government, or where the federal
government reserved jurisdiction upon granting statehood. See
Collins v. Yosemite Park Co., 304 U.S. 518, 529-30 (1938); James v.
Dravo Contracting Co., 302 U.S. 134, 141-42 (1937); Surplus Trading
Co. v. Cook, 281 U.S. 647, 650-52 (1930); Fort Leavenworth Railroad
Co. v. Lowe, 114 U.S. 525, 527 (1895). Examples of lands of
exclusive federal jurisdiction include Denali National Park.
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The EPA also notifies neighboring jurisdictions when the
Administrator determines that a discharge may affect the quality of
such jurisdictions' waters. Id. at 1341(a)(2). Although section 401
certification authority lies with the jurisdiction where the discharge
originates, a neighboring jurisdiction whose water quality is
potentially affected by the discharge may have an opportunity to raise
objections to a certification issued for a federal license or permit.
Where the EPA Administrator determines that a discharge subject to
section 401 ``may affect'' the water quality of a neighboring
jurisdiction, the EPA is required to notify that other jurisdiction.
Id. If the neighboring jurisdiction determines that the discharge
``will affect'' the quality of its waters in violation of a water
quality requirement of that jurisdiction, it may notify the EPA and the
federal licensing or permitting agency of its objection to the license
or permit. Id. It may also request a hearing on its objection with the
federal licensing or permitting agency. At such a hearing, section 401
requires the EPA to submit its evaluation and recommendations with
respect to the objection. The federal agency will consider the
jurisdiction's and the EPA's recommendations, and any additional
evidence presented at the hearing, and ``shall condition such license
or permit in such manner as may be necessary to insure compliance with
the applicable water quality requirements'' of the neighboring
jurisdiction. Id. If the conditions cannot ensure compliance, the
federal agency shall not issue the license or permit.
The EPA also must provide technical assistance for section 401
certifications upon the request of any federal or State agency or
project proponent. Id. at 1341(b). Technical assistance might include
provision of any relevant information on or comment on methods to
comply with applicable effluent limitations, standards, regulations,
requirements, or water quality standards.
Finally, the EPA is responsible for developing regulations and
guidance to ensure effective implementation of all CWA programs,
including section 401. Legislative history indicates that Congress
created the water quality certification requirement to ``recognize[ ]
the responsibility of Federal agencies to protect water quality
whenever their activities affect public waterways.'' S. Rep. No. 91-
351, at 3 (1969). ``In the past, these [Federal] licenses and permits
have been granted without any assurance that the [water quality]
standards will be met or even considered.'' Id. As an example, the
legislative history discusses the Atomic Energy Commission's failure to
consider the impact of thermal pollution on receiving waters when
evaluating ``site selection, construction, and design or operation of
nuclear powerplants.'' Id.
The certification requirement first appeared in section 21(b) of
the FWPCA, and it required States to certify that ``such activity will
be conducted in a manner which will not violate applicable water
quality standards.'' Public Law 91-224, 21(b)(1), 84 Stat. 91 (1970)
(emphasis added). As described above, the 1972 amendments restructured
the CWA and created a framework for compliance with effluent
limitations that would be established in discharge permits issued
pursuant to the new federal permitting program. The pre-existing water
quality certification requirement was retained in section 401 of the
1972 amendments but modified to be consistent with the overall
restructuring of the CWA. The new section 401 required a water quality
certification to assure that the ``discharge will comply'' with
effluent limitations and other enumerated regulatory provisions of the
Act. 33 U.S.C. 1341(a) (emphasis added). The 1972 amendments also
established a new section 401(d), which provides that certifications
``shall set forth any effluent limitations and other limitations, and
monitoring requirements necessary to assure'' compliance with the same
enumerated CWA provisions and with ``any other appropriate
requirement'' of State or Tribal law. 33 U.S.C. 1341(d).
The EPA first promulgated water quality certification regulations
in 1971 to implement section 21(b) of the FWPCA.\15\ Some operative
provisions of the EPA's 1971 certification regulations contain language
from section 21(b) of the FWPCA that Congress changed in the 1972
amendments. For example, the EPA's 1971 certification regulations
directed authorities to certify that ``the activity will be conducted
in a manner which will not violate applicable water quality
standards.'' 40 CFR 121.2(a)(2)-(3) (emphasis added). These outdated
provisions do not reflect the language of section 401 (as discussed
elsewhere in this preamble) and have caused confusion for States,
Tribes, stakeholders, and courts reviewing section 401 certifications.
In section 304(h) of the CWA, Congress commanded the EPA to promulgate
certification guidelines within 180 days of enactment of the 1972
amendments. See 33 U.S.C. 1314(h) (directing EPA to ``promulgate,'' by
April 1973, ``guidelines establishing test procedures for the analysis
of pollutants that shall include the factors which must be provided in
any certification pursuant to section 401 of this Act''). Yet the EPA
has not updated its certification regulations to conform with the 1972
amendments until now. A primary goal for this final rule is to update
and clarify the Agency's regulations to ensure that they are consistent
with the CWA.
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\15\ The EPA's 1971 certification regulations were located at 40
CFR part 121. The EPA has also promulgated regulations addressing
how 401 certification applies to the CWA section 402 NPDES program,
found at 40 CFR 124.53, 124.54, 124.55. See 48 FR 14264 (Apr. 1,
1983). This final rule does not address the NPDES regulations, and
the Agency will make any necessary conforming regulatory changes in
a subsequent rulemaking.
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3. The EPA's 1971 Certification Regulations
The EPA's 1971 certification regulations required certifying
authorities to act on a certification request within a ``reasonable
period of time.'' 40 CFR 121.16(b). The regulations provided that the
federal licensing or permitting agency
[[Page 42220]]
determines what constitutes a ``reasonable period,'' and that the
period shall generally be six months but in any event shall not exceed
one year. Id.
The 1971 certification regulations also provided that certifying
authorities may waive the certification requirement under two
circumstances: First, when the certifying authority sends written
notification expressly waiving its authority to act on a request for
certification; and second, when the federal licensing or permitting
agency sends written notification to the EPA Regional Administrator
that the certifying authority failed to act on a certification request
within a reasonable period of time after receipt of such a request. Id.
at 121.16(a)-(b). Once waiver occurs, certification is not required,
and the federal license or permit may be issued. 33 U.S.C. 1341(a).
The 1971 certification regulations established different
requirements that applied when the EPA was the certifying authority,
including specific information that must be included in a certification
request and additional procedures. Under these requirements, the
project proponent was required to submit to the EPA Regional
Administrator the name and address of the project proponent, a
description of the facility or activity and of any related discharge
into waters of the United States, a description of the function and
operation of wastewater treatment equipment, dates on which the
activity and associated discharge would begin and end, and a
description of the methods to be used to monitor the quality and
characteristics of the discharge. 40 CFR 121.22. Once the request was
submitted to the EPA, the Regional Administrator was required to
provide public notice of the request and an opportunity to comment,
specifically stating that ``all interested and affected parties will be
given reasonable opportunity to present evidence and testimony at a
public hearing on the question whether to grant or deny certification
if the Regional Administrator determines that such a hearing is
necessary or appropriate.'' Id. at 121.23. If, after consideration of
relevant information, the Regional Administrator determined that there
is ``reasonable assurance that the proposed activity will not result in
a violation of applicable water quality standards,'' the Regional
Administrator would issue the certification.\16\ Id. at 121.24.
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\16\ Use of the terms ``reasonable assurance'' and ``activity''
in this operative provision of the EPA's 1971 certification
regulations was consistent with section 21(b) of the pre-1972
statutory language. However, those terms are not used in the
operative provision of CWA section 401, which replaced the pre-1972
language. See Public Law 91-224, 21(b)(1), 84 Stat. 91 (1970).
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The 1971 certification regulations identified a number of
requirements that all certifying authorities must include in a section
401 certification. Id. at 121.2. For example, the regulations provided
that a section 401 certification shall include the name and address of
the project proponent. Id. at 121.2(a)(2). They also provided that the
certification shall include a statement that the certifying authority
examined the application made by the project proponent to the federal
licensing or permitting agency and bases its certification upon an
evaluation of the application materials which are relevant to water
quality considerations or that it examined other information sufficient
to permit the certifying authority to make a statement that there is a
``reasonable assurance that the activity will be conducted in a manner
which will not violate applicable water quality standards.'' Id. at
121.2(a)(2)-(3). Finally, the regulations provided that the
certification shall state ``any conditions which the certifying agency
deems necessary or desirable with respect to the discharge of the
activity,'' and other information that the certifying authority deems
appropriate.\17\ Id. at 121.2(a)(4)-(5).
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\17\ The term ``desirable'' is also not used in CWA section 401.
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The 1971 certification regulations also established a process for
the EPA to provide notification to neighboring jurisdictions in a
manner that is similar to that provided in CWA section 401(a)(2). Under
the 1971 certification regulations, the Regional Administrator was
required to review the federal license or permit application, the
certification, and any supplemental information provided to the EPA by
the federal licensing or permitting agency, and if the Regional
Administrator determined that there was ``reason to believe that a
discharge may affect the quality of the waters of any State or States
other than the State in which the discharge originates,'' the Regional
Administrator would notify each affected State within thirty days of
receipt of the application materials and certification. Id. at 121.13.
If the documents provided were insufficient to make the determination,
the Regional Administrator could request any supplemental information
``as may be required to make the determination.'' Id. at 121.12. In
cases where the federal licensing or permitting agency held a public
hearing on the objection raised by a neighboring jurisdiction, notice
of such objection was required to be forwarded to the Regional
Administrator by the licensing or permitting agency no later than 30
days prior to the hearing. Id. at 121.15. At the hearing, the Regional
Administrator was required to submit an evaluation and
``recommendations as to whether and under what conditions the license
or permit should be issued.'' Id.
The 1971 certification regulations established that the Regional
Administrator ``may, and upon request shall'' provide federal licensing
and permitting agencies with information regarding water quality
standards and advise them as to the status of compliance by dischargers
with the conditions and requirements of applicable water quality
standards. Id. at 121.30.
Finally, the 1971 certification regulations established an
oversight role for the EPA when a certifying authority modified a prior
certification. The regulation provided that a certifying authority
could modify its certification ``in such manner as may be agreed upon
by the certifying agency, the licensing or permitting agency, and the
Regional Administrator.'' Id. at 121.2(b) (emphasis added).
As noted throughout this final rule preamble, the EPA's 1971
certification regulations were promulgated prior to the 1972 CWA
amendments and in many respects do not reflect the current statutory
language in section 401. In addition, the EPA's 1971 certification
regulations do not address some important procedural and substantive
components of section 401 certification review and action. This final
rule is intended to modernize the EPA's regulations, align them with
the current text and structure of the CWA, and provide additional
regulatory procedures that the Agency believes will help promote
consistent implementation of section 401 and streamline federal license
and permit processes, consistent with the objectives of the Executive
Order.
4. Judicial Interpretations of Section 401
During the 48 years since its passage, the federal courts on
numerous occasions have interpreted key provisions of section 401. The
United States Supreme Court has twice addressed questions related to
the scope and triggering mechanism of section 401, and lower courts
also have addressed certain elements of section 401 certifications.
This section of the preamble summarizes the U.S. Supreme Court
decisions and major lower court decisions.
[[Page 42221]]
a. U.S. Supreme Court Decisions
i. PUD No. 1 of Jefferson County
In 1994, the Supreme Court reviewed a water quality certification
issued by the State of Washington for a new hydroelectric project on
the Dosewallips River. See PUD No. 1 of Jefferson County v. Washington
Dep't of Ecology, 511 U.S. 700 (1994) (PUD No. 1). This particular
decision, though narrow in its holding, has been read by other courts
as well as the EPA (in past years) and some States and Tribes to
significantly broaden the scope of section 401 beyond its plain
meaning.
The principal dispute adjudicated in PUD No. 1 was whether a State
or Tribe may require a minimum stream flow as a condition in a
certification issued under section 401. In this case, the project
proponent identified two potential discharges from its proposed
hydroelectric facility: ``the release of dredged and fill material
during construction of the project, and the discharge of water at the
end of the tailrace after the water has been used to generate
electricity.'' 511 U.S. at 711. The project proponent argued that the
minimum stream flow condition was unrelated to these discharges and
therefore beyond the scope of the State's authority under section 401.
Id.
The Court analyzed sections 401(a) and 401(d); specifically, it
analyzed the use of different terms in those sections of the statute to
inform the scope of a section 401 certification. Section 401(a)
requires the certifying authority to certify that the discharge from a
proposed federally licensed or permitted project will comply with
enumerated CWA provisions, and section 401(d) allows the certifying
authority to include conditions to assure that the applicant will
comply with enumerated CWA provisions and `` `any other appropriate'
state law requirements.'' 511 U.S. at 700. Emphasizing that the text of
section 401(d) ``refers to the compliance of the applicant, not the
discharge,'' the Court concluded that section 401(d) ``is most
reasonably read as authorizing additional conditions and limitations on
the activity as a whole once the threshold condition, the existence of
a discharge, is satisfied.'' Id. at 712.
The Court then concluded that this interpretation of the statute
was consistent with the EPA's 1971 certification regulations, to which
the Court accorded Chevron deference.\18\ The Court favorably quoted
the EPA's 1971 certification regulations at 40 CFR 121.2(a)(3); quoted
the EPA's guidance titled Wetlands and 401 Certification; and stated
that ``EPA's conclusion that activities--not merely discharges--must
comply with state water quality standards is a reasonable
interpretation of Sec. 401 and is entitled to deference.'' 511 U.S. at
712 (citing, inter alia, Chevron U.S.A. Inc. v. Natural Resources
Defense Council, Inc., 467 U.S. 837 (1984)).
---------------------------------------------------------------------------
\18\ The Court apparently failed to identify or understand that
the EPA's regulations were promulgated prior to the 1972 CWA
amendments and thus do not interpret the 1972 Act.
---------------------------------------------------------------------------
The Court was careful to note that a State's authority to condition
a certification ``is not unbounded'' and that States ``can only ensure
that the project complies with `any applicable effluent limitations and
other limitations, under [33 U.S.C. 1311, 1312]' or certain other
provisions of the Act, `and with any other appropriate requirement of
State Law.' '' 511 U.S. at 712. The Court concluded that ``state water
quality standards adopted pursuant to Sec. 303 are among the `other
limitations' with which a State may ensure compliance through the Sec.
401 certification process'' and noted that its view ``is consistent
with EPA's view of the statute,'' again citing the EPA's pre-1972
regulations and subsequent guidance. Id. at 713.
Although PUD No. 1 has been interpreted broadly by some to expand
State authority under section 401--beyond assessing water quality
impacts from the discharge, so as to allow conditions beyond the
enumerated CWA provisions--the Court did not stray from the bedrock
principles that a section 401 certification must address water quality
and that appropriate conditions include those necessary to assure
compliance with the State's water quality standards. Indeed, referring
to the section 401 language allowing certification conditions based on
``any other appropriate requirements of state law,'' the Court
explicitly declined to speculate ``on what additional state laws, if
any, might be incorporated by this language. But at a minimum,
limitations imposed pursuant to state water quality standards adopted
pursuant to Sec. 303 are appropriate requirements of state law.'' 511
U.S. at 713 (emphasis added).
On the scope of section 401, the dissenting opinion in PUD No. 1
would have declined to adopt the interpretation suggested by the EPA's
regulations and guidance and instead analyzed the statutory section as
a whole, attempting to harmonize sections 401(a) and (d). The dissent
first noted that, if the majority's conclusion that States can impose
conditions unrelated to discharges is correct, ``Congress' careful
focus on discharges in Sec. 401(a)(1)--the provision that describes
the scope and function of the certification process--was wasted
effort,'' and that the majority's conclusion ``effectively eliminates
the constraints of Sec. 401(a)(1).'' 511 U.S. at 726 (Thomas, J.,
dissenting). The dissent then ``easily reconciled'' the two provisions
by concluding that ``it is reasonable to infer that the conditions a
State is permitted to impose on certification must relate to the very
purpose the certification process is designed to serve. Thus, while
section 401(d) permits a State to place conditions on a certification
to ensure compliance of `the applicant,' those conditions must still be
related to discharges.'' Id. at 726-27. The dissent further noted that
each of the CWA provisions enumerated in section 401 ``describes
discharge-related limitations'' and therefore that the plain language
of section 401(d) supports the conclusion that certification conditions
must address water quality concerns from the discharge, not the
proposed activity as a whole. Id. at 727. Finally, the dissent applied
the principle ejusdem generis in its analysis of statutory construction
and concluded that because ``other appropriate requirements of state
law'' are included in a list of more specific discharge-related CWA
provisions, this ``general reference to `appropriate' requirements of
state law is most reasonably construed to extend only to provisions
that, like the other provisions in the list, impose discharge-related
restrictions.'' Id. at 728.
The dissent also took issue with the majority's reliance, at least
in part, on the EPA's regulations and its application of Chevron
deference. The dissent noted that the Court had not first identified
ambiguity in the statute and that the federal government had not sought
judicial deference to EPA's regulations. 511 U.S. at 728-29 (Thomas,
J., dissenting). See also Brief for the United States as Amicus Curiae
Supporting Affirmance, PUD No. 1 of Jefferson County v. Washington
Dep't of Ecology, No. 92-1911, (Dec. 1993). The dissent noted that
there was no EPA interpretation directly addressing the relationship
between sections 401(a) and (d), and that the only existing EPA
regulation that addresses the conditions that may appear in section 401
certifications ``speaks exclusively in terms of limiting discharges.''
\19\ Id. (citing 40 CFR 121.2(a)(4)).
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\19\ The amicus brief filed by the Solicitor General on behalf
of the EPA in this case did not grapple with the language in 401(a)
and (d) at all, but primarily argued that the proposed project had
two distinct discharges (which were undisputed) and that ``both
discharges could reasonably be said to cause a violation of the
State's water quality standards,'' including the designated uses and
antidegradation components. Brief for the United States as Amicus
Curiae Supporting Affirmance, PUD No. 1 of Jefferson County v.
Washington Dep't of Ecology, No. 92-1911 at 12 n. 2 (Dec. 1993)
(``It is therefore unnecessary to determine in this case whether
Congress intended by the use of the term ``applicant,'' rather than
``discharge, '' in section 401(d) to grant States a broader power to
condition certifications under section 401(d) than to deny them
under section 401(a) and, if so, whether there are limitations on
the States' authority to impose such conditions.'') The amicus brief
also did not inform the Court that the Agency's implementing
regulations included language from the prior version of the Act.
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[[Page 42222]]
The PUD No. 1 decision addressed two other scope-related elements
of section 401: Whether certification conditions may be designed to
address impacts to designated uses, and whether conditions related to
minimum stream flows are appropriate under section 401. First, the
Court conducted a plain language analysis of the CWA and concluded
that, ``under the literal terms of the statute, a project that does not
comply with a designated use of the water does not comply with the
applicable water quality standards.'' Id. at 715. This means that a
section 401 certification may appropriately include conditions to
require compliance with designated uses, which, pursuant to the CWA,
are a component of a water quality standard. Id. Second, the Court
acknowledged that the Federal Power Act (FPA) empowers FERC ``to issue
licenses for projects `necessary or convenient . . . for the
development, transmission, and utilization of power across, along,
from, or in any of the streams . . . over which Congress has
jurisdiction,' '' and that the FPA ``requires FERC to consider a
project's effect on fish and wildlife.'' Id. at 722. Although the Court
had previously rejected a State's minimum stream flow requirement that
conflicted with a stream flow requirement in a FERC license, the Court
found no similar conflict in this case because FERC had not yet issued
the hydropower license. Id. Given the breadth of federal permits that
CWA section 401 applies to, the Court declined to assert a broad
limitation on stream flow conditions in certifications but concluded
that they may be appropriate if necessary to enforce a State's water
quality standard, including designated uses. Id. at 723.
ii. S.D. Warren
In 2006, the Court revisited section 401 in connection with the
State of Maine's water quality certification of FERC license renewals
for five hydroelectric dams on the Presumpscot River. S.D. Warren Co.
v. Maine Bd. of Envtl. Prot., 547 U.S. 370 (2006) (S.D. Warren). The
issue presented in S.D. Warren was whether operation of a dam may
result in a ``discharge'' into the waters of the United States,
triggering the need for a section 401 certification, even if the
discharge did not add any pollutants. The Court analyzed the use of
different terms-- ``discharge'' and ``discharge of pollutants''--within
the CWA, how those terms are defined, and how they are used in CWA
sections 401 and 402. The Court noted that section 402 expressly uses
the term ``discharge of pollutants'' and requires permits for such
discharges; and that section 401, by contrast, provides a tool for
States to maintain water quality within their jurisdiction and uses the
term ``discharge,'' which is not independently defined in the Act.\20\
Finding no specific definition of the term ``discharge'' in the
statute, the Court turned to its common dictionary meaning: A ``flowing
or issuing out'' and concluded that the term is ``presumably broader''
than ``discharge of a pollutant.'' Id. at 375-76.
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\20\ The Court noted that the Act provides that ``the term
`discharge' when used without qualification incudes a discharge of a
pollutant, and a discharge of pollutants.'' 547 U.S. at 375 (quoting
33 U.S.C. 1362(16)).
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The Court held that operating a dam ``does raise a potential for a
discharge'' and, therefore, triggers section 401. 547 U.S. at 373. In
so holding, the Court observed that Congress had defined ``pollution''
under the Act to mean ``the man-made or man-induced alteration of the
chemical, physical, biological, and radiological integrity of water,''
33 U.S.C. 1362(19), and that ``[t]he alteration of water quality as
thus defined is a risk inherent in limiting river flow and releasing
water through turbines.'' 547 U.S. at 385. Such changes in a river
``fall within a State's legitimate legislative business, and the Clean
Water Act provides for a system that respects the State's concerns.''
Id. at 386. The Court concluded by observing that ``[s]tate
certifications under [section] 401 are essential in the scheme to
preserve state authority to address the broad range of pollution.'' Id.
This sentence, when read in isolation, has been interpreted as
broadening the scope of section 401 to allow certifying authorities to
consider potential environmental impacts from a proposed federally
licensed or permitted project that have nothing to do with water
quality. However, the Court followed that sentence with a quote from
Senator Muskie's floor statement during the enactment of section 401:
No polluter will be able to hide behind a Federal license or
permit as an excuse for a violation of water quality standard[s]. No
polluter will be able to make major investments in facilities under
a Federal license or permit without providing assurance that the
facility will comply with water quality standards. No State water
pollution control agency will be confronted with a fait accompli by
an industry that has built a plant without consideration of water
quality requirements.
Id. (emphasis added). The Court then stated, ``These are the very
reasons that Congress provided the States with power to enforce `any
other appropriate requirement of State law,' 33 U.S.C. 1341(d), by
imposing conditions on federal licenses for activities that may result
in a discharge.'' Id. (emphasis added). Thus, when read in context, the
Court's statement about a State's authority to address a ``broad range
of pollution'' under section 401 does not suggest that an ``appropriate
requirement of State law'' means anything other than water quality
requirements or that a State's or Tribe's action on a certification
request can be focused on anything other than compliance with
appropriate water quality requirements.
b. Circuit Court Decisions
Over the years, federal appellate courts have also addressed
important aspects of section 401, including the timing for certifying
authorities to act on a request and the scope of authority of federal
agencies other than the EPA to make determinations on section 401
certifications. This section highlights a few of the most significant
issues concerning section 401 and the most often cited decisions but
does not cover the universe of lower federal court or State court case
law. The Agency intends for this final rule to provide consistency and
certainty where there may currently be conflicting or unclear but
locally binding legal precedent.
Recent case law has provided insight concerning the timing and
waiver provisions of section 401. In 2018, the Second Circuit addressed
the question of when the statutory review clock begins. N.Y. State
Dep't of Envtl. Conservation v. FERC, 884 F.3d 450, 455-56 (2d Cir.
2018). Considering Millennium Pipeline Company's certification request,
the court disagreed with the State of New York and held that the
statutory time limit is not triggered when a State determines that a
request for certification is ``complete,'' but that the ``plain
language of Section 401 outlines a bright-line rule regarding the
beginning of review,'' and that the clock starts after ``receipt of
such request'' by the certifying authority. Id.
[[Page 42223]]
Otherwise, the court noted that States could ``blur this bright-line
into a subjective standard, dictating that applications are complete
only when state agencies decide that they have all the information they
need. The state agencies could thus theoretically request supplemental
information indefinitely.'' Id. at 456. The Agency agrees with this
holding.
The D.C. Circuit has also recently analyzed the statutory timeline
for review of a certification and has correctly held that, consistent
with the plain language of CWA section 401(a)(1), ``while a full year
is the absolute maximum, [the statute] does not preclude a finding of
waiver prior to the passage of a full year.'' Hoopa Valley Tribe v.
FERC, 913 F.3d 1099, 1104 (D.C. Cir. 2019), cert. denied sub nom. Cal.
Trout v. Hoopa Valley Tribe, 140 S.Ct. 650 (2019). Significantly, the
court observed that the EPA's own regulations--promulgated by ``the
agency charged with administering the CWA''--allowed for waiver after
only six months. Id.
In Hoopa Valley Tribe, the D.C. Circuit also correctly held that
``the withdrawal-and-resubmission of water quality certification
requests does not trigger new statutory periods of review.'' Id. at
1101. The court found that the project proponent and the certifying
authorities (California and Oregon) had improperly entered into an
agreement whereby the ``very same'' request for State certification of
its relicensing application was automatically withdrawn-and resubmitted
every year by operation of ``the same one-page letter,'' submitted to
the States before the statute's one-year waiver deadline. Id. at 1104.
The court observed that ``[d]etermining the effectiveness of such a
withdrawal-and-resubmission scheme is an undemanding inquiry'' because
the statute's text ``is clear'' that failure or refusal to act on a
request for certification within a reasonable period of time, not to
exceed one year, waives the State's ability to certify.\21\ Id. at
1103. The court found that, pursuant to the unlawful withdrawal-and-
resubmission ``scheme,'' the States had not yet rendered a
certification decision ``more than a decade'' after the initial request
was submitted to the States. Id. at 1104. The court declined to
``resolve the legitimacy'' of an alternative arrangement whereby an
applicant may actually submit a new request in place of the old one.
Id. Nor did it determine ``how different a request must be to
constitute a `new request' such that it restarts the one-year clock.''
Id. On the facts before it, the court found that ``California's and
Oregon's deliberate and contractual idleness'' defied the statute's
one-year limitation and ``usurp[ed] FERC's control over whether and
when a federal license will issue.'' Id.
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\21\ Two decisions from the Second Circuit recently acknowledged
that project proponents have withdrawn and resubmitted certification
requests to extend the reasonable time period for a state to review.
See N.Y. State Dep't of Envtl. Conservation v. FERC, 884 F.3d at
456; Constitution Pipeline v. N.Y. State Dep't of Envtl.
Conservation, 868 F.3d 87, 94 (2d Cir. 2018). However, in neither
case did the court opine on the legality of such an arrangement.
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Another important area of case law deals with the scope of
authority and deference provided to federal agencies other than the EPA
in addressing issues arising under section 401. Many other federal
agencies, including FERC and the Corps, routinely issue licenses and
permits that require section 401 certifications and are responsible for
enforcing State certification conditions that are incorporated into
federal licenses and permits. However, because the EPA has been charged
by Congress with administering the CWA, some courts have concluded that
those other federal agencies are not entitled to deference on their
interpretations of section 401. See Ala. Rivers Alliance v. FERC, 325
F.3d 290, 296-97 (D.C. Cir. 2002); Am. Rivers, Inc. v. FERC, 129 F.3d
99, 107 (2d. Cir. 1997). Other courts have concluded that FERC has an
affirmative obligation to determine whether a certifying authority has
complied with requirements related to a section 401 certification. See
City of Tacoma v. FERC, 460 F.3d 53, 67-68 (D.C. Cir. 2006) (FERC had
an obligation to ``obtain some minimal confirmation of such
compliance''); see also Keating v. FERC, 927 F.2d 616, 622-23, 625
(D.C. Cir. 1991) (while a federal agency may not question propriety of
State certification before license has issued, ``FERC must at least
decide whether the state's assertion of revocation satisfies section
401(a)(3)'s predicate requirements'').
In an important determination of procedural authorities, the Second
Circuit has held that FERC--as the licensing agency--``may determine
whether the proper state has issued the certification or whether a
state has issued a certification within the prescribed period.'' Am.
Rivers, Inc., 129 F.3d at 110-11. This holding is correct; the holding
is consistent with and supported by the implied statutory authority of
a federal agency to establish the ``reasonable period of time (which
shall not exceed one year)'' in the first place. 33 U.S.C. 1341(a)(1).
Case law also highlights the potential enforcement challenges that
federal agencies face with section 401 certification conditions that
are included in federal licenses and permits. Federal agencies have
been admonished not to ``second guess'' a State's water quality
certification or its conditions, see, e.g., City of Tacoma, 460 F.3d at
67; Am. Rivers Inc., 129 F.3d at 107; U.S. Dept. of Interior v. FERC,
952 F.2d 538, 548 (D.C. Cir. 1992) (``FERC may not alter or reject
conditions imposed by the states through section 401 certificates.''),
even where the federal agency has attempted to impose conditions that
are more stringent than the State's conditions. See Sierra Club v. U.S.
Army Corps of Engineers, 909 F.3d 635, 648 (4th Cir. 2018) (``the plain
language of the Clean Water Act does not authorize the Corps to replace
a state condition with a meaningfully different alternative condition,
even if the Corps reasonably determines that the alternative condition
is more protective of water quality''); see also Lake Carriers' Assoc.
v. EPA, 652 F.3d 1, 6, 12 (D.C. Cir. 2011) (concluding that additional
notice and comment on State certification conditions would have been
futile because ``the petitioners have failed to establish that EPA can
alter or reject state certification conditions. . . .''). But in Lake
Carriers' Assoc., the court also observed, ``[n]otably, the petitioners
never argued that the certifications failed to `compl[y] with the terms
of section 401,' . . . by overstepping traditional bounds of state
authority to regulate interstate commerce'' (citing City of Tacoma, 460
F.3d at 67), and the court concluded that it ``therefore need not
consider whether EPA has authority to reject state conditions under
such circumstances.'' Also, in Snoqualmie Indian Tribe v. FERC, the
Ninth Circuit upheld FERC's inclusion of minimum flow requirements
greater than those specified in the State of Washington's certification
as long as they ``do not conflict with or weaken the protections
provided by the [State] certification.'' 545 F.3d 1207, 1219 (9th Cir.
2008). In that case, FERC had added license conditions increasing the
minimum flows specified in the State's certification in order to
``produce a great amount of mist'' which it determined would ``augment
the Tribe's religious experience,'' one of the water's designated uses.
Id.; see also cases discussed at section III.G of this notice affirming
a role for federal agencies to confirm whether certifications comply
with the requirements of section 401.
This final rule is intended to provide clarity to certifying
authorities, federal agencies, and project proponents, as it
[[Page 42224]]
addresses comprehensively and for the first time relevant competing
case law and attempts to clarify the scope of conditions that may be
included in a certification and the federal agencies' role in the
certification process.
5. Administrative Law Principles
To understand the full context and legal basis for this final rule,
it is useful to review some key governing principles of administrative
law. In general, administrative agencies can exercise only the
authority that has been provided to them by Congress, and courts must
enforce unambiguous terms that clearly express congressional intent.
However, when Congress delegates authority to administrative agencies,
it sometimes enacts ambiguous statutory provisions. To carry out their
congressionally authorized missions, agencies, including the EPA, must
often interpret ambiguous statutory terms. However, they must do so
consistent with congressional intent. In Chevron, U.S.A. v. Natural
Resources Defense Council, Inc., 467 U.S. 837 (1984) (Chevron), the
Supreme Court concluded that courts have a limited role when reviewing
agency interpretations of ambiguous statutory terms. In such cases,
reviewing courts defer to an agency's interpretation of ambiguous terms
if the agency's interpretation is reasonable. Under Chevron, federal
agencies--not federal courts--are charged in the first instance with
resolving statutory ambiguities to implement delegated authority from
Congress.
The Supreme Court has described the Chevron analysis as a ``two-
step'' process. Encino Motorcars, LLC v. Navarro, 136 S. Ct. 2117, 2124
(2016). At step one, the reviewing court determines whether Congress
has ``directly spoken to the precise question at issue.'' Chevron, 467
U.S. at 842. If so, ``that is the end of the matter; for the court, as
well as the agency, must give effect to the unambiguously expressed
intent of Congress.'' Id. at 842-43. If the statute is silent or
ambiguous, the reviewing court proceeds to the second step, in which
the court must defer to the agency's ``reasonable'' interpretation of
the statute. Id. at 844.
In the field of judicial review of agencies' regulations that
interpret statutes that those agencies administer, Chevron deference
relies on the principle that ``when Congress grants an agency the
authority to administer a statute by issuing regulations with the force
of law, it presumes the agency will use that authority to resolve
ambiguities in the statutory scheme.'' Encino Motorcars, 136 S. Ct. at
2125 (citing Chevron, 467 U.S. at 843-44). Courts thus have applied
Chevron deference to an agency's statutory interpretation ``when it
appears that Congress delegated authority to the agency generally to
make rules carrying the force of law, and that the agency
interpretation claiming deference was promulgated in the exercise of
that authority.'' Mayo Found. for Medical Educ. and Res. v. United
States, 562 U.S. 44, 45 (2011) (quoting United States v. Mead Corp.,
533 U.S. 218, 226-27 (2001)).
In Chevron, the Supreme Court reviewed the EPA's interpretation of
statutory language from the Clean Air Act Amendments of 1977. Congress
amended the Clean Air Act to impose requirements on States that had not
achieved the national air quality standards promulgated by the EPA.
States that had not attained the established air standards had to
implement a permit program that would regulate ``new or modified major
stationary sources'' of air pollution. Clean Air Act Amendments of
1977, Public Law 95-95, 91 Stat. 685 (1977). The EPA promulgated
regulations defining a ``stationary source'' as the entire plant where
pollutant-producing structures may be located. The EPA, therefore,
treated numerous pollution-producing structures collectively as a
single ``stationary source,'' even if those structures were part of the
same larger facility or complex. See 40 CFR 51.18(j)(1)(i)-(ii) (1983).
Under the EPA's regulation, a facility could modify or construct new
pollution-emitting structures within the facility or complex as long as
the stationary source--the facility as a whole--did not increase its
pollution emissions.
In 1981, the Natural Resources Defense Council (NRDC) opposed the
EPA's definition of ``stationary source'' and filed a challenge to the
Agency's regulations. The D.C. Circuit agreed with the NRDC and set
aside the EPA's regulations. The D.C. Circuit acknowledged that the
Clean Air Act ``does not explicitly define what Congress envisioned as
a `stationary source,' to which the permit program . . . should
apply,'' and also concluded that Congress had not clearly addressed the
issue in the legislative history. NRDC v. Gorsuch, 685 F.2d 718, 723
(DC Cir. 1982). Without clear text or intent from Congress, the D.C.
Circuit looked to the purposes of the program to guide the court's
interpretation. Id. at 726. According to the court, Congress sought to
improve air quality when it amended the Clean Air Act, and the EPA's
definition of ``stationary source'' merely promoted the maintenance of
current air quality standards.
In a unanimous decision, the Supreme Court reversed, finding that
the D.C. Circuit had committed a ``basic legal error'' by adopting ``a
static judicial definition of the term `stationary source' when it had
decided that Congress itself had not commanded that decision.''
Chevron, 467 U.S. at 842. The Court explained that it is not the
judiciary's place to establish a controlling interpretation of a
statute delegating authority to an agency, but, rather, that it is the
agency's job to ``fill any gap left, implicitly or explicitly, by
Congress.'' Id. at 843. When Congress expressly delegates to an
administrative agency the authority to interpret a statute through
regulation, courts cannot substitute their own interpretation of the
statute when the agency has provided a reasonable construction of the
statute. See id. at 843-44.
During the rulemaking process, the EPA had explained that Congress
had not fully addressed the definition of ``source'' in the amendments
to the Clean Air Act or in the legislative history. Id. at 858. The
Supreme Court agreed, concluding that ``the language of [the statute]
simply does not compel any given interpretation of the term `source.'''
Id. at 860. And the legislative history associated with the amendments
was ``silent on the precise issue.'' Id. at 862.
In its proposed and final rulemaking, the EPA noted that adopting
an individualized equipment definition of ``source'' could
disincentivize the modernization of plants, if industry had to go
through the permitting process to create changes. Id. at 858. The EPA
believed that adopting a plant-wide definition of ``source'' could
result in reduced pollution emissions. Id. Considering the Clean Air
Act's competing objectives of permitting economic growth and reducing
pollution emissions, the Supreme Court stated that ``the plantwide
definition is fully consistent with one of those concerns--the
allowance of reasonable economic growth--and, whether or not we believe
it most effectively implements the other, we must recognize that the
EPA has advanced a reasonable explanation for its conclusion that the
regulations serve the environmental objectives as well.'' Id. at 863.
The Court upheld the EPA's definition of the term ``stationary
source,'' explaining that ``the Administrator's interpretation
represents a reasonable accommodation of manifestly competing interests
and is entitled to deference: The regulatory scheme is technical and
complex, the
[[Page 42225]]
agency considered the matter in a detailed and reasoned fashion, and
the decision involves reconciling conflicting policies.'' Id. at
865.\22\
---------------------------------------------------------------------------
\22\ For other instructive applications of Chevron's
interpretative principles, see Entergy Corp. v. Riverkeeper, Inc.
556 U.S. 208, 222-23 (2009) (statutory silence interpreted as
``nothing more than a refusal to tie the agency's hands''); Zuni
Pub. School Dist. v Dep't of Educ. 550 U.S. 81, 89-94 (2007) (court
considered whether agency's interpretation was reasonable in light
of the ``plain language of the statute'' as well as the statute's
``background and basic purposes''); Healthkeepers, Inc. v. Richmond
Ambulance Auth., 642 F.3d 466, 471 (4th Cir. 2011) (``statutory
construction . . . is a holistic endeavor'').
---------------------------------------------------------------------------
In the Brand X decision, the Supreme Court further elaborated on
the Chevron doctrine, upholding agencies' broad power to interpret
ambiguous statutes as against contrary judicial interpretations. Even
if a court has ruled on the interpretation of a statute, the ``court's
prior judicial construction of a statute trumps an agency construction
otherwise entitled to Chevron deference only if the prior court
decision holds that its construction follows from the unambiguous terms
of the statute and thus leaves no room for agency discretion.'' Nat'l
Cable & Telecomm. Ass'n v. Brand X internet Serv., 545 U.S. 967, 982
(2005) (emphasis added). Put another way, Brand X held that ``a court's
choice of one reasonable reading of an ambiguous statute does not
preclude an implementing agency from later adopting a different
reasonable interpretation.'' United States v. Eurodif S.A., 555 U.S.
305, 315 (2009). This principle stems from Chevron itself, which
``established a `presumption that Congress, when it left ambiguity in a
statute meant for implementation by an agency, understood that the
ambiguity would be resolved, first and foremost, by the agency, and
desired the agency (rather than the courts) to possess whatever degree
of discretion the ambiguity allows.' '' Brand X, 545 U.S. at 982
(quoting Smiley v. Citibank, 517 U.S. 735, 740-41 (1996)). As Chevron
itself noted, even the ``initial agency interpretation is not instantly
carved in stone.'' Chevron, 467 U.S. at 863.
In Brand X, the Federal Communications Commission (FCC or
Commission) interpreted the scope of the Communications Act of 1934,
which subjects providers of ``telecommunications service'' to mandatory
common-carrier regulations. Brand X, 545 U.S. at 977-78. Brand X
internet Services challenged the FCC's interpretation, and the Ninth
Circuit concluded, based on the court's precedent, that the
Commission's construction of the Communications Act was impermissible
Id. at 979-80. The Supreme Court granted certiorari and reversed. The
Supreme Court upheld the FCC's interpretation of the Communications Act
by applying Chevron's two-step analysis. The Court found that the
relevant statutory provisions failed to unambiguously foreclose the
Commission's interpretation, while other provisions were silent. The
FCC had ``discretion to fill the consequent statutory gap,'' and its
construction was reasonable. Id. at 997.
As the Court noted, the entire ``point of Chevron is to leave the
discretion provided by the ambiguities of a statute with the
implementing agencies.'' 545 U.S. at 981 (quoting Smiley, 517 U.S. at
742). Thus courts cannot rely on judicial precedent to override an
agency's interpretation of an ambiguous statute. Id. at 982. Instead,
as a ``better rule,'' a reviewing court can rely only on precedent that
interprets a statute at ``Chevron step one.'' Id. ``Only a judicial
precedent holding that the statute unambiguously forecloses the
agency's interpretation, and therefore contains no gap for the agency
to fill, displaces a conflicting agency construction.'' Id. at 982-83.
A contrary rule would produce anomalous results, because the
controlling interpretation would then turn on whether a court or the
agency had interpreted the statutory provision first. See id. at 983.
``[W]hether Congress has delegated to an agency the authority to
interpret a statute does not depend on the order in which the judicial
and administrative constructions occur.'' Id. Agencies have the
authority to revise ``unwise judicial constructions of ambiguous
statutes.'' Id.
6. Response to Comments on the Legal Background
The Agency solicited and received numerous comments on the legal
background for the proposed rule. Among others, these comments included
legal arguments pertaining to the Tenth Amendment, interstate commerce,
cooperative federalism, the APA, and the Agency's rulemaking authority.
The sections below provide the EPA's response to the most salient of
those comments.
a. The Tenth Amendment and the Commerce Clause
Some commenters asserted the proposed rule would violate the Tenth
Amendment, citing the sovereignty that States have over waters of the
United States. One commenter asserted that jurisdictional power over
waters of the State was reserved for the States and not delegated to
Congress. Another commenter asserted that the proposal would constitute
a ``usurping'' of State authority and overstepping the Tenth Amendment
rights of the States. The EPA disagrees with these commenters. For the
reasons set forth in section II.F.1 of this notice and in the following
paragraph, the Agency considers this final rule to be a careful and
thoughtful clarification of State and Tribal involvement in federal
licensing or permitting proceedings, including those in which State and
Tribal authority may otherwise be preempted by federal law. The final
rule does not ``usurp'' State authority. As discussed, the EPA's final
rule is consistent with section 401, strikes the appropriate balance
Congress intended between federal and State authority, and does not
limit State authority any more than Congress intended under section
401.
The Agency also received a comment asserting that the proposed rule
would violate the Tenth Amendment because federal agencies cannot
commandeer States to regulate interstate commerce in particular ways,
citing New York v. United States, 505 U.S. 144, 166 (1992). The
commenter noted that in New York, the Supreme Court, in striking down
portions of the Low-Level Radioactive Waste Policy Amendments Act of
1985 that required States to regulate as Congress instructed or to take
title to the waste, found that Congress cannot command States how to
legislate and that Congress must exercise legislative authority only
directly upon individuals. The Agency disagrees with this commenter.
This final rule neither directs the functioning of the States nor
commands States how to legislate or regulate. The final rule merely
affirms and clarifies the scope of the authority that Congress granted
to certifying authorities to review and condition a federal license or
permit within certain reasonable bounds, informed by the text of the
Act, and provides a procedural framework for States, Tribes, and
federal agencies to follow that will promote consistency in 401
certification proceedings.
In the proposal, the EPA solicited comment on whether the proposed
rule appropriately balanced the scope of State authority under section
401 with Congress' goal of facilitating commerce on interstate
navigable waters. Some commenters argued that the cases referenced in
the proposed rule preamble, including Lighthouse Resources, Inc. v.
Inslee and Lake Carrier's Association v. EPA, 652 F.3d 1 (D.C. Cir.
2011), are not relevant to this rulemaking. The Agency disagrees with
the suggestion that these cases are irrelevant because, among other
things, they demonstrate that section 401
[[Page 42226]]
actions are not insulated from legal challenges asserting State or
Tribal interference with interstate commerce and violations of the
Commerce Clause. The Agency did not rely on these decisions to inform
the substance of the final rule; rather, they were considered as part
of the overall context of litigation and regulatory uncertainty that
contributed to the need to update the 1971 certification regulations to
be consistent with CWA section 401.
Other commenters supported the proposal and raised concerns that
States and Tribes could use section 401 actions to override federal
trade policy with which they disagree. At least one commenter asserted
that coastal States and States that border Canada and Mexico could
misuse section 401 to block the construction of international terminals
for exports, including energy, agricultural, and manufacturing exports.
This commenter asserted that such misuse could also result in blocking
imports from trading partners based on objections of a single State.
The EPA appreciates these comments and agrees that there is a risk that
State or Tribal certification authority could be misused in the way
described by the commenter. However, as described elsewhere in this
final rule preamble and in the Economic Analysis for the Clean Water
Act Section 401 Certification Rule (``the Economic Analysis,''
available in the docket for this final rule), the EPA acknowledges that
many certifications reflect an appropriately limited interpretation of
the purpose and scope of section 401 and are issued without
controversy, and that the limitations expressed in this rulemaking
should further curb any improper invocation of section 401 authority.
The EPA has determined that this final rule appropriately balances
the interests of State or Tribal participation in federal license or
permit proceedings under section 401 with Congress' goal of
facilitating interstate commerce on navigable waters. Because Congress
relied on its authority under the Interstate Commerce Clause when it
enacted the CWA, including section 401, this rule respects that
balance. The Agency has for the first time clearly defined the scope of
certification, reducing the risk that States and Tribes would deny or
condition certifications for reasons beyond the authority provided in
section 401 or that such denials or conditions would place undue
burdens on interstate commerce.
b. Cooperative Federalism
A number of commenters asserted that the proposed rule is
inconsistent with the concept of cooperative federalism and the
important role of States and Tribes as co-regulators, and therefore,
these commenters believed that the proposed rule undermines the
cooperative federalism structure established by Congress in the CWA in
section 101(b) and section 101(g). Most of these commenters noted that
the CWA recognizes States' primary authority over their water
resources, designates States as co-regulators under a system of
cooperative federalism, and expresses intent to preserve and protect
States' responsibilities and rights. Commenters stated that the CWA was
founded on a principle of cooperative federalism, and that the EPA
should not dictate what States can and cannot do. Another commenter
asserted that the proposed rule would unduly limit States' authority
and autonomy to protect their water resources. A few commenters
asserted that the proposed rule would harm Congress' division of
authority between certifying authorities and federal licensing and
permitting agencies. Some commenters asserted that the proposed rule
neglects States' interests.
Other commenters asserted that the proposed rule is consistent with
the overall cooperative federalism framework established by Congress in
the CWA and appropriately balances federal and State authority. A few
commenters argued that under section 401, Congress was conferring on
States a narrow exception to act in areas that are otherwise preempted
entirely by federal law. These commenters described section 401
certifications as playing a limited role in a much larger federal
permitting scheme envisioned in the CWA. A few commenters supporting
the proposed rule described an appreciation for the EPA's desire to
preserve State sovereignty and cooperative federalism in conjunction
with greater consistency in implementing section 401. Several
commenters observed that the proposed rule would promote efficiency and
would be consistent with the intent of the 1972 CWA amendments, leading
to consistent nationwide implementation, while allowing the States to
retain their primary roles under the CWA. Other commenters stated that
the current regulations have allowed States to impose conditions beyond
the scope of water quality effects of a discharge, leading to lengthy
delays and a process that is ill-defined, confusing in scope, and
lacking clear deadlines. Other commenters suggested that the proposed
rule supports timely issuance of permits and licenses and agreed that
the proposed rule would ensure that section 401 certification does not
exceed the scope of CWA jurisdiction.
The EPA has considered these diverse comments and concludes that
the final rule does not infringe upon the roles of States as co-
regulators, nor does it undermine cooperative federalism. The final
rule does not and cannot alter the basic scope of authority granted by
Congress to States and Tribes for the review of potential discharges
associated with federal licenses and permits for compliance with water
quality standards. States and authorized Tribes, for example, remain
primarily responsible to develop the water quality standards with which
federal projects must comply.
Accordingly, this rule neither diminishes nor undermines
cooperative federalism. Rather, the final rule clearly identifies when
a certification is required and the permissible scope of such a
certification--including conditions of that certification--and
reaffirms that certifying authorities have a reasonable period of time
to act on a certification request, which cannot exceed one year. This
clarity helps define the appropriate parameters of cooperative
federalism contemplated by section 401, and does not undermine it.
The EPA disagrees with commenters who suggest that concepts of
``cooperative federalism'' preclude the EPA from establishing
regulations to implement section 401. Cooperative federalism must be
implemented consistent with the statutory framework under the CWA,
which does not allow EPA to authorize, either explicitly or by
implication, States to implement this important federal program in a
manner beyond the authority established by Congress. Indeed, as the
Agency charged with administering the CWA, EPA's role here is similar
to its baseline setting function in other aspects of the Act, to ensure
that there are sufficient authorities and limitations in place for
States and Tribes to effectively implement CWA programs within the
scope that Congress established. The final rule provides, for the first
time, a consistent framework to govern the implementation of CWA
section 401 that complies with the 1972 CWA amendments.
c. Administrative Procedure Act
Some commenters asserted that the proposed rule is arbitrary and
capricious and an abuse of discretion. Some commenters cited Motor
Vehicle Mfrs. Ass'n of U.S., Inc. v. State Farm Mut. Auto., 463 U.S. 29
(1983), and argued that the EPA ``relied on factors which Congress has
not intended it to consider, entirely failed to consider an
[[Page 42227]]
important aspect of the problem, offered an explanation for its
decision that runs counter to the evidence before the agency or is so
implausible that it could not be ascribed to a difference in view or
the product of agency expertise.'' Id. at 43. One commenter asserted
that the EPA was arbitrary and capricious because the proposed rule
lacks analysis of water quality impacts and fails to consider whether
the proposed rule, if adopted, will ensure that the CWA's overarching
goal to protect water quality is met. This commenter further asserted
that when combined with the EPA's recent action to significantly narrow
the definition of ``waters of the United States,'' the effect of the
proposed rule could be to leave a regulatory gap, especially in cases
where federal law preempts State water quality regulations. Commenters
also argued, citing State Farm, 463 U.S. at 43, that the EPA failed to
``examine the relevant data and articulate a satisfactory explanation
for its action including a rational connection between the facts found
and the choice made.'' These commenters also cited Nat'l Cotton Council
of Am. v. EPA, 553 F.3d 927, 939 (6th Cir. 2009), and asserted that,
when the EPA adopts CWA regulations, it cannot ``ignore the directive
given to it by Congress . . . which is to protect water quality.'' One
commenter argued that the Agency elevated industrial interests over
State section 401 authority and therefore considered factors not
allowed by Congress in violation of the APA, citing Nat'l Lifeline
Ass'n v. FCC, 915 F.3d 19 (D.C. Cir. 2019) (quoting Motor Vehicle Mfrs.
Ass'n v. State Farm Mut. Auto Ins. Co., 463 U.S. 29, 43 (1983)).
The final rule is neither arbitrary nor capricious nor an abuse of
the EPA's discretion. In crafting the final rule, the Agency started
with the statutory language of the CWA; where the plain language of the
Act was unclear or otherwise ambiguous, the EPA considered the
structure and purposes of the Act, relevant legal precedent, and
legislative history. The EPA also carefully considered the widely
varying and competing comments received during the pre-proposal
outreach, including Tribal and State engagement, and more than 125,000
public comments filed in the public docket, which are described
throughout this final rule preamble. These are factors that Congress
intended the Agency to consider. 5 U.S.C. 553(b) and (c). The Agency
carefully examined the statutory language and the legislative history
when determining the scope of certification and the appropriate role of
federal licensing and permitting agencies. The final rule promotes the
overarching goals of the CWA to prevent, reduce, and eliminate
pollution in the nation's waters and to regulate discharges into waters
of the United States, while preserving States' major role in
implementing the CWA. The Agency has examined relevant and available
data and articulated a robust basis for the rulemaking in the proposed
and final rule preambles. See the Economic Analysis and the Supporting
Statement for the Information Collection Request for the Clean Water
Act Section 401 Certification Rule for further discussion of available
data.
Some commenters asserted the proposed rule is arbitrary and
capricious because it is a reversal of existing policy and that the
Agency did not provide adequate support for the policy reversal. Some
commenters argued that when an agency undertakes a new interpretation,
it needs a factual record on which to make such a change. These
commenters asserted that no record exists in the proposed rule and that
no recognition of prior State and EPA practice is evident. One
commenter argued that the EPA failed to provide a valid, reasoned basis
for departing from decades of agency practice. Some commenters also
asserted that the Agency did not demonstrate that the existing
regulations are inadequate or explain how the proposed rule will
provide increased predictability in comparison, noting that litigation
over section 401 denials falls short of a reasoned explanation. These
commenters argued that the proposed rule is just as likely to create
more confusion, unpredictability, and delay given the sweeping changes
that the proposed rule seeks to implement. Some commenters asserted
that the EPA was required to and has failed to conduct a careful
analysis of past certification reviews to demonstrate the need for the
proposed rule. Some commenters argued that the proposed rule does not
consider and analyze alternatives, as these commenters assert the
Agency is required to do, particularly when it proposes to reverse its
policy, citing State Farm, 463 U.S. at 46-48; Ctr. For Science in the
Pub. Interest v. Dep't of Treasury, 797 F.2d 995, 999 (D.C. Cir. 1986).
The Agency disagrees with these commenters and concludes that its
justification in this rulemaking is more than adequate. The Agency's
final rule includes for the first time a well-defined scope for State
and Tribal review and actions under section 401. As articulated
throughout the proposal and this final rule preamble, the 1971
certification regulations were promulgated to implement section 21(b)
of the 1970 FWPCA, not section 401 of the 1972 CWA amendments. See
section II.F.3 of this notice. The 1972 amendments made two major
changes affecting the scope of the certification requirement: It
changed ``activity'' to ``discharge'' in section 401(a) and added
section 401(d), which describes effluent limitations, other
limitations, and monitoring requirements that may be included in a
certification. These important statutory elements were not present or
contemplated in the 1971 certification regulations, which the EPA is
updating with this final rule. It is entirely appropriate, and
necessary, for the EPA to conform to the 1972 CWA amendments when
updating its almost 50-year-old certification regulations. As noted
throughout the proposal preamble and the Economic Analysis, the EPA
acknowledges that many certifications reflect an appropriately limited
interpretation of the purpose and scope of section 401 and are issued
without controversy. Although a few high profile certification denials
are part of the factual and administrative record for this rulemaking,
and EPA has considered these facts during the rulemaking process, the
EPA has not relied on these facts as the sole or primary basis for this
rulemaking. The Agency's longstanding failure to update its regulations
created the confusion and regulatory uncertainty that were ultimately
the cause of those controversial section 401 certification actions and
the resulting litigation. To illustrate the type of uncertainty this
rule is attempting to resolve, recent court cases indicate that some
project proponents, certifying authorities and federal agencies have
different ideas about when the time for review of a certification
begins and--once begun--whether the review period can be tolled or
extend beyond one year. See Hoopa Valley Tribe v. FERC, 913 F.3d 1099
(D.C. Cir. 2019); New York State Dep't of Envtl. Conservation v. FERC,
884 F.3d 450 (2d Cir. 2018); Constitution Pipeline Co., LLC v. New York
State Dep't of Envtl. Conservation, 868 F.3d 87 (2d Cir. 2017).
Questions have also arisen regarding the role of the federal agency in
determining whether a waiver has occurred. Millennium Pipeline Co. v.
Seggos, 860 F. 3d 696 (D.C. Cir. 2017). Recent litigation also raises
the issue of a certifying authority's ability to deny certification for
other than water quality-related reasons. See Lighthouse Resources,
Inc. v. Inslee, No. 3:18-cv-5005 (W.D. Wash. filed Jan. 8, 2018).
[[Page 42228]]
This rule updates the EPA's regulations to be consistent with the
language of section 401 as enacted in 1972. The final rule, while
focused on the relevant statutory provisions and case law interpreting
those provisions, is informed by the Agency's expertise developed over
nearly 50 years of implementing the CWA and policy considerations where
necessary to address certain ambiguities in the statutory text. For the
first time, this final rule aligns the EPA's regulations with the 1972
amendments and provides clarity to certifying authorities, federal
licensing and permitting agencies, project proponents, and the general
public.
Other commenters asserted that the proposed rule is carrying out
the direction given by the Executive Order to stop States from
``hindering the development of energy infrastructure'' and asserted
that administrative action with such a predestined result should not be
afforded the level of deference typically afforded. Certain commenters
also cited Watt v. Alaska, 451 U.S. 259, 273 (1981), and General
Electric Co. v. Gilbert, 429 U.S. 125, 143 (1976), to argue that the
EPA is overturning fifty years of practice under the CWA in violation
of the clear language of 33 U.S.C. 1251(b), 33 U.S.C. 1341, and 33
U.S.C. 1370; and asserted that the EPA is entitled to less deference
when overturning past practice.
The Agency disagrees that this rulemaking result was predetermined
by the Executive Order. As discussed in this final rule preamble, the
Executive Order does not specify details about what the regulation must
say, deferring to the Agency and its technical expertise, as informed
by public input, to develop a regulation consistent with the CWA. The
EPA issued a proposed rule, received public comment on that rule, made
changes in this final rule in response to comments and to increase
clarity and regulatory certainty for the section 401 certification
process, and explained the basis for these changes. None of that was
predetermined. The EPA further disagrees with commenters' assertions
that either the proposed rule or this final rule violates the CWA. As
described throughout this notice, the EPA for the first time conducted
a holistic analysis of the text, structure, and history of CWA section
401. The final rule is based on this holistic analysis and is
consistent with the language and congressional intent of section 401
and is informed by important policy considerations and the Agency's
expertise. Commenter's reliance on Watt v. Alaska, 451 U.S. 259 273,
(1981), and General Electric Co. v. Gilbert, 429 U.S. 125, 143 (1976),
is misplaced because both decisions pre-date Chevron and Brand X. As
described in section II.F.5 above, EPA has undertaken this rulemaking
in accordance with key principles of administrative law, respecting
unambiguous terms of the CWA and interpreting ambiguous language in
section 401 consistent with congressional intent. The EPA's approach
and rationale are set out in detail in the proposal and this final rule
preamble and are supported by applicable Supreme Court precedent.
d. Rulemaking Authority
Several commenters cited A.L.A. Schechter Poultry Corp. v. United
States, 295 U.S. 495, 537-38 (1935), and argued that the proposed rule
is unconstitutional because it reflects the executive branch
legislating absent congressional delegation to do so. One commenter
asserted that federal executive agencies have no inherent authority to
make law and are subject to the legislative powers of the Congress.
This commenter cited Louisiana Pub. Serv. Comm'n v. FCC, 476 U.S. 355,
374 (1986), and argued that agency authority is limited to the
authority granted by Congress, and that the EPA cannot add conditions
outside the scope of the CWA for which Congress provided. Other
commenters asserted that by seeking to limit how States exercise their
authority under section 401, the proposed rule would exceed the
Agency's statutory authority ``to prescribe such regulations as are
necessary to carry out [the EPA Administrator's] functions under [the
Clean Water Act]'' (33 U.S.C. 1361(a)) and would instead intrude upon
the ``responsibilities and rights'' Congress expressly reserved to the
States. See 33 U.S.C. 1251(b). Other commenters agreed with the
proposal, stating that the EPA is tasked with promulgating rules for
the implementation of the CWA, including one commenter citing Alabama
Rivers Alliance v. FERC, 325 F.3d 290, 296-97 (2003).
The EPA agrees that the section 401 rulemaking must be consistent
with the CWA and the EPA's authority under the Act, but disagrees with
commenters who asserted that the proposal or this final rule exceeded
that authority. Section 501 of the CWA gives the Administrator the
authority to adopt rules ``as are necessary to carry out his functions
under this chapter.'' 33 U.S.C. 1361(a). Section 101(d) of the CWA
expressly provides that the Administrator shall administer the CWA. 33
U.S.C. 1251(d). Section 401 of the CWA includes responsibilities for
the Administrator to issue certifications when a State or interstate
agency has no authority to issue a certification under section
401(a)(1), to ensure the protection of other States' waters under
section 401(a)(2), and to provide technical assistance under section
401(b). Section 304(h) of the CWA also specifically directs the EPA to
``promulgate guidelines establishing test procedures for the analysis
of pollutants that shall include the factors which must be provided in
any certification pursuant to section 401 of this Act.'' 33 U.S.C.
1314(h) (setting April 1973 deadline for doing so). The EPA is doing so
with this final rule.
To carry out its functions under section 401, the EPA must adopt
rules that ensure transparency and accountability for actions taken
under section 401. This includes defining the scope of section 401 and
adopting appropriate procedures to implement the timing, public notice
and other requirements in section 401. Upon examination of the language
of section 401, the relevant case law and legislative history, the
Agency recognizes that section 401 contains some ambiguities and lacks
clarity in some sections. The Administrator's role under section
101(d), as the person charged with administering the CWA, includes
adopting reasonable interpretations of the statute to resolve
ambiguities and provide clarity. For example, because CWA section
304(h) requires the Administrator to develop guidelines that ``shall
include the factors that must be provided'' in any CWA section 401
certification, the EPA appropriately interprets that provision as
authorizing the Administrator to identify ``factors'' that may not be
included in a certification. The final rule presents a reasonable
interpretation of the scope of section 401, which, given the
ambiguities in sections 401(a) and 401(d), is properly the subject of
Agency interpretation. The final rule also requires certification
conditions and denials to be within that scope and that certain
information be included in a certification or denial to support the
action. These substantive and procedural regulations are necessary for
the Administrator to act as a certifying authority, to administer
section 401 provisions related to neighboring jurisdictions, and to
provide technical assistance to other certifying authorities, federal
agencies, and project proponents.
Other commenters objected to the proposed rule, asserting that it
would disrespect the separation of powers by not implementing the will
of Congress as expressed in the CWA. U.S. Const.
[[Page 42229]]
art. II, Sec. 3. As discussed throughout this notice, the proposed
rule was consistent with statutory language of the CWA and
congressional intent, and this final rule appropriately implements the
will of Congress as expressed in the CWA.
One commenter questioned the EPA's claim that it has the power to
alter ``unwise'' judicial decisions. A few commenters stated that
Chevron deference does not give a federal agency the power to rewrite
federal law, and they asserted, citing INS v. Cardozo-Fonseca, 480 U.S.
421 (1987); Adams Fruit Co. v. Barrett, 494 U.S. 638, 649-650 (1990);
Encino Motorcars, LLC. v. Navarro, 136 S. Ct. 2117 (2016); and Kisor v.
Wilkie, 139 S. Ct. 2400, 2417 (2019), that the proposed rule falls
outside the scope of Chevron deference. A few commenters argued that
the proposal's ``holistic'' review inappropriately found ambiguity in
the statutory language to justify drastic changes to the federal-State
relationship that section 401 established. These commenters argued that
instances where federal authority is encroaching on State authority
warrant heightened concern, citing SWANCC, 531 U.S. 159, 173 (2001),
and asserted that any changes must be based on a clear statement from
Congress.
Other commenters stated that the divergent language of section
401(a) and section 401(d) creates ambiguity that needs to be resolved.
These commenters argued that the EPA's proposed interpretation is
reasonable and necessary to fill that statutory gap. One commenter
stated that the EPA correctly recognized that the Court's reliance on
Chevron deference in PUD No. 1 was entirely misplaced, as the Court did
not begin by first identifying an ambiguity in the statute, and the
Court ignored the fact that the EPA's own regulations at the time spoke
only in terms of ``discharges.'' A number of commenters agreed with the
EPA's proposal to address the ambiguities in the CWA statutory language
and the inconsistent application of the current regulations that impact
project applicants and other States' sovereignty. These commenters
agreed that the proposed rule would promote regulatory certainty, help
streamline the federal licensing and permitting process for critical
infrastructure development, enhance the ability of project proponents
to plan for construction, and facilitate early and constructive
engagement between permittees, States or authorized Tribes, and federal
agencies to ensure that proposed projects will be protective of local
water quality.
As discussed in section II.F.5 of this notice, Chevron supplies the
appropriate framework for judicial review of statutory interpretation.
If the language of a congressional statute is clear, that unambiguous
meaning controls. If, however, the congressional text is ambiguous, a
reviewing court will defer to the implementing Agency's permissible
interpretation. Where, as in CWA section 401(a), Congress used
unambiguous terms like ``which shall not exceed one year'' and ``after
the receipt of such request,'' it is reasonable, indeed necessary, for
the Agency to apply the plain meaning of those terms when drafting its
implementing regulations. Where terms are ambiguous, such as ``other
appropriate requirement of State law'' in CWA section 401(d), the EPA
is authorized to fill the congressional gap and supply a reasonable
interpretation. Brand X supports the EPA's authority to interpret
ambiguous terms in section 401 and its ability to make reasonable
regulatory choices. That case recognizes that an Agency's statutory
interpretation is precluded only when, in a prior decision, a court
concluded that its contrary interpretation was compelled by the plain
language of the relevant text. Brand X, 545 U.S. at 982 (``[A] court's
prior judicial construction of a statute trumps an agency construction
otherwise entitled to Chevron deference only if the prior court
decision holds that its construction follows from the unambiguous terms
of the statute and thus leaves no room for agency discretion.''). None
of the EPA interpretations upon which its final regulatory language is
based, including the Agency's decision that section 401(d) limitations
and requirements may be placed only on the ``discharge'' and not on the
``activity,'' are inconsistent with that principle.
G. Legal Construct for the Final Rule
As the preceding discussion demonstrates, the most challenging
aspects of section 401 concern the scope of review and action on a
certification request. The Agency is finalizing a regulation that will
clarify these aspects and provide additional regulatory certainty for
States, Tribes, federal agencies, and project proponents on the timing
and procedural requirements of the CWA. This section summarizes some of
the core legal principles that inform this final rule, and section III
of this notice describes how the Agency is applying those legal
principles to support the final rule.
1. Scope of Certification
The EPA has for the first time conducted a holistic analysis of the
text, structure, and history of CWA section 401. As a result of that
analysis, the EPA is establishing the scope of section 401 as
protecting the quality of waters of the United States from point source
discharges associated with federally licensed or permitted activities
by requiring compliance with water quality requirements, as defined in
this final rule.
Since at least 1973, the EPA has issued memoranda and guidance
documents, and the Department of Justice has filed briefs in various
court cases on behalf of the EPA, addressing section 401. Only a
handful of these documents address the scope of section 401, and none
was the product of a holistic examination of the statute or its
legislative history. As a result, these documents included little or no
explanation for the Agency's interpretations. For example, in 1989, the
EPA issued a guidance document asserting that a section 401
certification could broadly address ``all of the potential effects of a
proposed activity on water quality--direct and indirect, short and long
term, upstream and downstream, construction and operation. . . .'' EPA,
Wetlands and 401 Certification 23 (April 1989). The guidance document's
only explanation for this assertion is a reference to section
401(a)(3), which provides that a certification for a construction
permit may also be used for an operating permit that requires
certification. The guidance document, which did not undergo notice and
comment procedures, does not provide any analysis to support its
assertion that a certification could address all potential impacts from
the ``proposed activity'' as opposed to the discharge. Several years
later, the United States filed an amicus brief in the Supreme Court on
behalf of the EPA in the PUD No. 1 case. The amicus brief asserted that
petitioners were ``mistaken'' in their contention that the State's
minimum flow condition is outside the scope of section 401 because the
condition would be valid ``if it is necessary to assure that discharges
resulting from the project will comply with applicable provisions of
the CWA or `any other appropriate requirement of State law.' '' See
Brief for the United States as Amicus Curiae Supporting Affirmance, PUD
No. 1 of Jefferson County v. Washington Dep't of Ecology, No. 92-1911
at 11-12 (Dec. 1993) (emphasis added). The brief went on to identify
``two distinct discharges'' that would result from the petitioner's
facility and that would violate the CWA. The amicus brief did not offer
an affirmative interpretation to harmonize the different language in
sections 401(a)
[[Page 42230]]
and 401(d) and instead relied on the plain language in section 401(a).
More than a decade later, the United States' Supreme Court amicus brief
in the S.D. Warren case adopted without explanation the Supreme Court's
analysis in PUD No. 1 that once section 401 is triggered by a
discharge, a certification can broadly cover impacts from the entire
activity. Finally, in 2010, the EPA issued its now-rescinded Interim
Handbook, which included a number of recommendations on scope, timing,
and other issues, none of which were supported with robust analysis or
interpretation of the Act. The Interim Handbook, which did not undergo
notice and comment procedures either, also did not reference the fact
that the 1971 certification regulations were not updated after the CWA
was enacted in 1972.
This rulemaking is the first time that the EPA has undertaken a
holistic review of the text of section 401 in the larger context of the
structure and legislative history of the 1972 Act and earlier federal
water protection statutes, and the first time the Agency has subjected
its analysis to public notice and comment. The final rule is informed
by this holistic review and presents a framework that the EPA considers
to be most consistent with the text of the Act and congressional
intent. After considering and taking into account the comments
submitted on the proposed rule, the Agency has made some enhancements
in this final rule to appropriately capture the scope of authority for
granting, conditioning, denying, and waiving a section 401
certification. For further discussion and response to comments on the
scope of certification, see section III.E of this notice.
a. Water Quality
The EPA concludes that the scope of a State's or Tribe's section
401 review or action is not unbounded and must be limited to
considerations of water quality. Clarifying the proper scope in this
manner aligns with the objective of the CWA to restore and maintain
water quality (see CWA section 101(a)) Moreover, there is no suggestion
in either the plain language or the structure of the statute that
Congress envisioned section 401 to authorize action beyond that which
is necessary to address water quality directly. Indeed, as described in
greater detail above, the 1972 amendments to the CWA resulted in the
enactment of a comprehensive scheme designed to prevent, reduce, and
eliminate pollution in the nation's waters generally, and to regulate
the discharge of pollutants into waters of the United States
specifically.
In its recent decision in County of Maui, Hawaii v. Hawaii Wildlife
Fund, et al., No. 18-260, the Supreme Court reaffirmed that ``Congress'
purpose as reflected in the language of the Clean Water Act is to
`restore and maintain the . . . integrity of the Nation's waters,'
Sec. 101(a)'' (Op. at 2, emphasis added) and underscored the
importance of interpreting the statutory text ``in light of the
statute's language, structure, and purposes'' in a manner that avoids
the creation of ``a massive loophole in the permitting scheme that
Congress established'' that would ``allow[ ] easy evasion of the
statutory provision's basic purposes.'' (Op. at 12, 15 (April 23,
2020)). The EPA's interpretation of the scope of CWA section 401 as
limited to considerations of water quality is fully consistent with
these fundamental principles and respects the congressional scheme at
issue in County of Maui. As discussed below and throughout the
preamble, this is also true of the Agency's other textual
interpretations that inform the definitions and requirements of this
rule relating to, for example, ``discharge,'' ``a reasonable period of
time (which shall not exceed one year,'' ``water quality
requirements,'' and ``any other appropriate requirement of State law.''
The EPA is aware that some certifying authorities may have
previously interpreted the scope of section 401 in a way that resulted
in the incorporation of non-water quality-related considerations into
their certification review process. For example, certifying authorities
have on occasion required in a certification condition the construction
of biking and hiking trails, requiring one-time and recurring payments
to State agencies for improvements or enhancements that are unrelated
to the proposed federally licensed or permitted project, and the
creation of public access for fishing along waters of the United
States. Certifying authorities have also attempted to address all
potential environmental impacts from the creation, manufacture, or
subsequent use of products generated by a proposed federally licensed
or permitted activity or project that may be identified in an
environmental impact statement or environmental assessment, prepared
pursuant to the NEPA or a State law equivalent. This includes, for
example, consideration of impacts associated with air emissions and
transportation effects.
The Agency has concluded that interpreting the scope of section 401
to allow States and Tribes to regulate and consider effects of an
activity rather than a discharge would invoke the outer limits of power
that Congress delegated to the Agency under the CWA. The imposition of
conditions unrelated to water quality is not consistent with the scope
of the CWA generally or section 401. There is nothing in the text of
the statute or its legislative history that signals that Congress
intended to impose, using section 401, federal requirements on licensed
or permitted activities beyond those addressing water quality-related
impacts. Indeed, Congress knows how to craft statutes to require
consideration of multi-media effects (see, e.g., NEPA), and has enacted
specific statutes addressing impacts to air (Clean Air Act), wildlife
(Endangered Species Act), and cultural resources (National Historic
Preservation Act), by way of example.\23\ Subsequent congressional
action directly addressing a particular subject is relevant to
determining whether a previously adopted statute reaches that subject
matter. See FDA v. Brown & Williamson Tobacco Corp., 529 U.S. 120, 155
(2000) (determining that ``actions by Congress over the past 35 years''
that addressed tobacco directly, when ``taken together,'' ``preclude[d]
an interpretation'' that a previously adopted statute, the Food, Drug,
and Cosmetic Act, ``grant[ed] the FDA jurisdiction to regulate tobacco
products.'').
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\23\ See, e.g., 42 U.S.C. 4321 et seq. (NEPA); 42 U.S.C. 7401 et
seq. (Clean Air Act); 16 U.S.C. 1531 et seq. (Endangered Species
Act); and 16 U.S.C. 470 et seq. (National Historic Preservation
Act).
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If Congress had intended section 401 of the CWA to authorize
consideration or the imposition of certification conditions based on
air quality or transportation concerns, public access to waters, energy
policy, or other multi-media or non-water quality impacts, it would
have provided a clear statement to that effect. Neither the CWA nor
section 401 contains any such clear statement. In fact, Congress
specifically contemplated a broader policy direction in the 1972
amendments that would have authorized the EPA to address impacts to
land, air, and water through implementation of the CWA, but it was
rejected.\24\ The Agency has concluded
[[Page 42231]]
that inclusion of the phrase ``any other appropriate requirement of
State law'' in section 401(d) hardly provides clear direction from
Congress that section 401(d) could extend beyond water quality.
Therefore EPA concludes that section 401(d)--like section 401(a) and
the rest of the Act--is limited to considerations of ``water quality.''
\25\
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\24\ As Congress drafted the 1972 CWA amendments, the House bill
(H.R. 11896) included section 101(g) within its ``Declaration of
Goals and Policy'' providing, ``(g) In the implementation of this
Act, agencies responsible therefor shall consider all potential
impacts relating to the water, land, and air to insure that other
significant environmental degradation and damage to the health and
welfare of man does not result.'' H.R. 11896, 92nd Cong. (1971)
(emphasis added). Section 101(g) of the House bill was
``eliminated'' at conference, and the Act was ultimately passed with
no federal policy, goal, or directive to address non-water quality
impacts through the CWA. S. Rep. 92-1236, at 100 (1972) (Conf.
Rep.).
\25\ The Agency also concludes that the term ``applicant'' in
section 401(d) creates ambiguity in the statute. See section
II.G.1.b of this notice for discussion of the use of the term
``applicant'' in section 401(d).
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Pursuant to the plain language of section 401, when a State or
authorized Tribe (and in some cases, the EPA) issues a certification,
it has determined that the discharge into waters of the United States
from a proposed federally licensed or permitted activity will comply
with applicable effluent limitations for new and existing sources (CWA
sections 301, 302, and 306), water quality standards and implementation
plans (section 303), toxic pretreatment effluent standards (section
307), and--by way of its power to add conditions pursuant to section
401(d)--other ``appropriate requirements'' of State or Tribal law. 33
U.S.C. 1341(a)(1), (d). The enumerated CWA provisions identify
requirements to ensure that discharges of pollutants do not degrade
water quality,\26\ and specifically referenced throughout section 401
is the requirement to ensure compliance with ``applicable effluent
limitations'' and ``water quality requirements,'' underscoring the
focused intent of this provision on the protection of water quality
from discharges.\27\ See 33 U.S.C. 1341(a), (b), (d). The legislative
history for the Act provides further support for the EPA's
interpretation, as it frequently notes that the focus of the section is
on assuring compliance with water quality requirements and water
quality standards and the elimination of any discharges of pollutants.
See, e.g., S. Rep. No. 92-414, at 69 (1971).
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\26\ For example, CWA section 306 defines the standard of
performance for new sources of discharges as ``a standard for the
control of the discharge of pollutants which reflects the greatest
degree of effluent reduction which the Administrator determines to
be achievable through application of best available demonstrated
control technology, processes, operating methods, or other
alternatives, including, where practicable, a standard permitting no
discharge of pollutants.'' 33 U.S.C. 1316(a)(1). Section 303 notes
that new or revised state water quality standards ``[s]hall be such
as to protect the public health or welfare, enhance the quality of
water and serve the purposes of this chapter.'' Id. at
1313(c)(2)(A).
\27\ The term ``effluent limit'' is defined as, ``any
restriction established by a State or the Administrator on
quantities, rates, and concentrations of chemical, physical,
biological, and other constituents which are discharged from point
sources into navigable waters, the waters of the contiguous zone, or
the ocean, including schedules of compliance[,]'' 33 U.S.C.
1362(11); and the CWA requires that ``water quality standards''
developed by states and tribes ``consist of the designated uses of
the navigable waters involved and the water quality criteria for
such waters based upon such uses.'' Id. at 1313(c)(2)(A).
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The CWA does not define what is an ``appropriate requirement'' of
State law for purposes of adding conditions to a section 401
certification.\28\ In interpreting this term, the Agency acknowledges
the need to respect the clear policy direction from Congress to
recognize and preserve State authority over land and water resources
within their borders, see 33 U.S.C. 1251(b), and the Agency must avoid
interpretations of the CWA that infringe on traditional State land use
planning authority. See SWANCC, 531 U.S. at 172-73; Will, 491 U.S. at
65. One interpretation of this clause in section 401(d) could be that
it authorizes the denial of certification or the imposition of
conditions in a federal license or permit based on non-water quality-
related impacts if those requirements are based on any existing State
or Tribal law. Such an interpretation, however, is counterintuitive in
a statute aimed at protecting the ``chemical, physical, and biological
integrity of the nation's waters.'' For example, it is difficult to
imagine what guiding principle would help one determine whether to
import state labor law or professional licensing requirements into a
section 401 certification; such requirements could arguably be relevant
to a dam project, but mere relevance is not nearly sufficient to sweep
these types of laws within the ambit of an environmental statute aimed
at water quality. The CWA does not give EPA a clear basis to venture
into such regulatory arenas, which (in the absence of clearly expressed
congressional direction) are more appropriately reserved to the powers
of the States, ``powers with which Congress does not readily
interfere.'' Gregory, 501 U.S. at 461 (describing the ``plain statement
rule'').
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\28\ The EPA notes that during congressional hearings on the
1972 amendments, the House Committee was presented with testimony
that the term ``applicable water quality requirements'' should be
defined, but no definition was included in the enacted bill. See
section III.E.2.b for further discussion on this legislative
history.
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The Agency does not believe that Congress intended the phrase ``any
other appropriate requirement of State law'' to be read so broadly.
Instead, the ejusdem generis canon helps to inform the appropriate
interpretation of the statutory text. Under this principle, where
general words follow an enumeration of two or more things, they apply
only to things of the same general kind or class specifically
mentioned. See Wash. State Dept. of Social and Health Services v.
Keffeler, 537 U.S. 371, 383-85 (2003). Here, the general term
``appropriate requirement'' in section 401(d) follows an enumeration of
four specific sections of the CWA that are all focused on the
protection of water quality from point source discharges to waters of
the United States.\29\ Given the text, structure, purpose, and
legislative history of the CWA and section 401, and informed by
important policy considerations and the Agency's expertise, the EPA
interprets ``appropriate requirement'' for section 401 certification
purposes to include those provisions of State or Tribal law that
contain requirements for point source discharges into waters of the
United States, including provisions that are more stringent than
federal law. See S. Rep. No. 92-414, at 69 (1971) (``In addition, the
provision makes clear that any water quality requirements established
under State law, more stringent than those requirements established
under the Act, shall through certification become conditions on any
Federal license or permit.''). In this respect, the EPA agrees with the
logic of Justice Thomas's dissent in PUD No. 1, wherein he concludes
that ``the general reference to `appropriate' requirements of State law
is most reasonably construed to extend only to provisions that, like
other provisions in the list, impose discharge-related restrictions.''
PUD No. 1, 511 U.S. at 728 (Thomas, J., dissenting). The Agency's
interpretation gives meaning to Congress's decision to use the word
``appropriate'' in the phrase ``any other appropriate requirement of
State law set forth in such certification.''
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\29\ See Section II.G.1.c for further discussion on point source
discharges to waters of the United States in the context of section
401. Although section 401(a) mentions five sections of the CWA,
section 401(d) omits section 303. In PUD No. 1, the Court
interpreted section 303 to be included in section 401(d) by
reference to section 301. PUD No. 1, 511 U.S. at 712-13.
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Consistent with the proposal, the final rule limits the scope of
section 401 and the term ``appropriate requirements of State law'' to
those requirements directly related to water quality. As discussed in
greater detail in section III.E.2.b of this notice, the final rule
definition of ``water quality requirements'' has been modified from the
proposal, but does not stray from the core principle and focus of Title
IV of the CWA--to protect the quality of waters of the United States
from point source discharges.
[[Page 42232]]
b. Activity or Discharge
Based on the text, structure, and legislative history of the CWA,
the EPA is affirming under this final rule that a certifying
authority's review and action under section 401 must be limited to
water quality impacts from the potential discharge associated with a
proposed federally licensed or permitted project. Section 401(a)
explicitly provides that the certifying authority, described as ``the
State in which the discharge originates or will originate,'' must
certify that ``any such discharge will comply with the applicable
provisions of sections 301, 302, 303, 306, and 307 of this Act''
(emphasis added). The plain language of section 401(a) therefore
directs authorities to certify that the discharge resulting from the
proposed federally licensed or permitted project will comply with the
CWA. Section 401(d) uses different language and requires the certifying
authority to ``set forth any effluent limitations and other
limitations, and monitoring requirements necessary to assure that any
applicant for a Federal license or permit will comply with any
applicable effluent limitations and other limitations, under section
301 or 302 of this title, standard of performance under section 306 of
this title, or prohibition, effluent standard, or pretreatment standard
under section 307 of this title, and with any other appropriate
requirement of State law set forth in such certification'' (emphasis
added).\30\ The use of the term ``applicant'' in section 401(d)--
instead of ``discharge'' as found in section 401(a)--creates ambiguity,
and has been interpreted as broadening the scope of section 401(a),
beyond consideration of water quality impacts from the ``discharge''
which triggers the certification requirement, to allow certification
conditions that address water quality impacts from any aspect of the
construction or operation of the activity as a whole. See PUD No. 1,
511 U.S. at 712.
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\30\ As a matter of practice, the Corps seeks State
certification for ``its own discharges of dredged or fill
material,'' ``[a]lthough the Corps does not process and issue
permits for its own activities.'' 33 CFR 336.1(a)(1).
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The ordinary meaning of the word ``applicant'' is ``[o]ne who
applies, as for a job or admission.'' See Webster's II, New Riverside
University Dictionary (1994). In section 401(d), this term is used to
describe the person or entity that applied for the federal license or
permit that requires a certification. The use of this term in section
401(d) is consistent with the text of the CWA, which uses the term
``applicant'' throughout to describe an individual or entity that has
applied for a grant, a permit, or some other authorization.\31\
Importantly, the term is also used in section 401(a) to identify the
person responsible for obtaining the certification: ``Any applicant for
a Federal license or permit to conduct any activity including, but not
limited to, the construction or operation of facilities, which may
result in any discharge into the navigable waters, shall provide the
licensing or permitting agency a certification from the State . . . .''
In the section 401 context, the term ``applicant'' also may include in
some circumstances the federal licensing or permitting agency, such as
where the federal agency is seeking certification for a general license
or permit.
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\31\ See, e.g., 33 U.S.C. 1311 (``An application for an
alternative requirement under this subsection shall not stay the
applicant's obligation to comply with the effluent limitation
guideline or categorical pretreatment standard which is the subject
of the application.''); id. at 1344 (``Not later than the fifteenth
day after the date an applicant submits all the information required
to complete an application for a permit under this subsection, the
Secretary shall publish the notice required by this subsection.'')
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Relying on the presence of the term ``applicant'' in section 401(d)
to interpret section 401(d) as allowing certification conditions that
are unrelated to a discharge would expand section 401 regulatory
authority beyond the scope of those sections of the Act enumerated in
section 401. Those enumerated CWA sections focus on regulating
discharges to waters of the United States. The Agency is not aware of
any other instance in which the term ``applicant'' (or permittee or
owner or operator) as used in the CWA has been interpreted to
significantly expand the jurisdictional scope or meaning of the
statute. The Agency therefore understands the term ``applicant'' in
section 401(d) as merely identifying the person or entity responsible
for obtaining and complying with the certification and any associated
conditions and not as expanding the regulatory scope of that section.
This interpretation of the term ``applicant,'' which appropriately ties
the term to the discharges that are the regulatory focus of section 401
as a whole and to the purposes of this section, is consistent with and
supported by the use in section 401(d) of the phrase ``applicant for a
Federal license or permit,' which refers back to the fuller phrase set
forth at the beginning of section 401(a): ``applicant for a Federal
license or permit to conduct any activity . . . which may result in any
discharge into the navigable waters.'' (Emphasis added.) This
interpretation also gives reasonable, and permissible, meaning to the
term ``appropriate'' in the phrase ``any other appropriate requirement
of State law set forth in such certification.'' The textual history and
legislative history of section 401, discussed below, provide additional
support for this interpretation.
Section 401 was updated as part of the 1972 CWA amendments to
reflect the restructuring of the Act, as described in section II.F.1 of
this notice. Two important phrases were modified between the 1970 and
the 1972 versions of section 401 that help explain what Congress
intended with the 1972 amendments. First, the 1970 version provided
that an authority must certify ``that such activity . . . will not
violate water quality standards.'' Public Law 91-224 Sec. 21(b)(1)
(emphasis added). Significantly, Congress modified this language in
1972, requiring an authority to certify ``that any such discharge shall
comply with the applicable provisions of [the CWA].'' 33 U.S.C. 1341(a)
(emphasis added). On its face, this modification made the 1972 version
of section 401 consistent with the overall framework of the amended
statutory regime, which focuses on regulating discharges to attain
water quality standards and adds new federal regulatory programs to
achieve that purpose. 33 U.S.C. 1311, 1312, 1313, 1316, 1317, 1342 and
1344.
Second, the 1972 version included section 401(d) for the first
time. This provision authorizes conditions to be imposed on a
certification ``to assure that any applicant for a Federal license or
permit will comply with any applicable effluent limitations and other
limitations, under section 301 or 302 of this Act, standard of
performance under section 306 of this Act, or prohibition, effluent
standard, or pretreatment standard under section 307 of this Act, and
with any other appropriate requirement of State law set forth in such
certification . . . .''Id. at 1341(d). This new section also requires
such conditions to be included in the federal license or permit. Id.
Together, these amendments to the pre-1972 statute focus section
401 on discharges that may affect water quality, enumerate newly
created federal regulatory programs with which section 401 mandates
compliance, and require that water quality-related certification
conditions be included in federal licenses and permits and thereby
become federally enforceable. The legislative history describing these
changes supports a conclusion that the provisions were added
intentionally and with the purpose of making the new section 401
consistent with the new
[[Page 42233]]
framework of the Act. Indeed, the 1971 Senate Report provided that
section 401 was ``amended to assure consistency with the bill's changed
emphasis from water quality standards to effluent limitations based on
the elimination of any discharge of pollutants.'' S. Rep. No. 92-414,
at 69 (1971).
An EPA attorney previously analyzed the modifications made to
section 401 between the 1970 and 1972 Acts. See Memorandum from
Catherine A. Winer, Attorney, EPA Office of General Counsel, Water
Division, to David K. Sabock, North Carolina Department of Natural
Resources (Nov. 12, 1985).\32\ In its analysis, the attorney
characterized the legislative history quoted above as ``not very
explicit,'' and characterized the new section 401 language as ``not
altogether clear.'' Id. Based on this analysis, the attorney found at
that time that ``the overall purpose of section 401 is clearly `to
assure that Federal licensing or permitting agencies cannot override
water quality requirements' '' and that ``section 401 may reasonably be
read as retaining its original [i.e., pre-1972] scope, that is,
allowing state certifications to address any water quality standard
violation resulting from an activity for which a certification is
required, whether or not the violation is directly caused by a
`discharge' in the narrow sense.'' Id. (citing S. Rep. No. 92-414, at
69 (1971)).
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\32\ Available at https://www.epa.gov/sites/production/files/2015-01/documents/standards-marinas-memo.pdf.
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The EPA has now performed a holistic analysis of the text and
structure of the CWA, the language of section 401, and the amendments
made between 1970 and 1972. Based on this review, the EPA now concludes
that the 1972 version of section 401 made specific changes to ensure
that discharges were controlled in compliance with the 1972 CWA
regulatory programs and appropriate requirements of State law. For the
reasons noted above in section II.F.1 of this notice, identifying and
regulating discharges, as opposed to managing ambient water quality,
promotes accountability and enforcement of the Act in a way that the
1970 and earlier versions did not. The EPA also observes that, had
Congress intended the 1972 amendments to retain the original scope
concerning ``activity,'' it could have easily crafted section 401(d) to
authorize certification conditions to assure that ``the activity''
would comply with the specified CWA provisions, but it did not.
Instead, Congress' use of the term ``discharge'' in section 401(a)
frames the scope of the certification requirement under the Act. As a
result, the Agency now considers a more natural and more reasonable
interpretation of the 1972 amendments to be that Congress rejected the
idea that the scope of a certifying authority's review or its
conditions should be defined by the term ``activity.'' Congress
specifically did not carry forward the term ``activity'' in the
operative phrase in section 401(a) and did not incorporate it into the
new provision authorizing certification conditions in section 401(d).
Under basic canons of statutory construction, the EPA begins with the
presumption that Congress chose its words intentionally. See, e.g.,
Stone v. INS, 514 U.S. 386, 397 (1995) (``When Congress acts to amend a
statute, we presume it intends its amendment to have real and
substantial effect.''). This is also consistent with the dissent in PUD
No. 1, wherein Justice Thomas concluded that ``[i]t is reasonable to
infer that the conditions a State is permitted to impose on
certification must relate to the very purpose the certification process
is designed to serve. Thus, while Sec. 401(d) permits a State to place
conditions on a certification to ensure compliance of the
`applicant'[,] those conditions must still be related to discharges.''
PUD No. 1, 511 U.S. at 726-27 (Thomas, J., dissenting). The EPA has
concluded that this interpretation is reasonable and the most
appropriate reading of the statute and related legal authorities.
As described in detail in section II.F.4.a.i of this notice, the
Supreme Court in PUD No. 1 considered the scope of a State's authority
to condition a section 401 certification. In response to petitioners'
argument in that case that certification conditions may only be limited
to the ``discharge'' referenced in section 401(a), the Court noted that
``[t]he text refers to the compliance of the applicant, not the
discharge.'' Id. at 712. Without further analysis of the ambiguity
created by the use of the term ``applicant'' in section 401(d), the
Court concluded that ``Sec. 401(d) is most reasonably read as
authorizing additional conditions and limitations on the activity as a
whole once the threshold condition, the existence of a discharge, is
satisfied.'' Id. at 712. The Court did not grapple with the range of
actions that its interpretation may require of the applicant, or
whether the entire range would or should be within the scope of section
401. The Court did not evaluate or find support for its interpretation
in the legislative history of the 1972 amendments to the CWA, nor did
the Court find that Congress had established an intent that the term
``applicant'' in section 401(d) should mean ``activity.'' Although some
have argued that the Court's conclusion is based on a plain language
interpretation of section 401(d), for the reasons explained below, the
EPA disagrees. The EPA concludes that the use of the term ``discharge''
in section 401(a) and ``applicant'' in section 401(d) creates
ambiguity, that the plain text of 401(d) also is ambiguous, and that
neither the Court's analysis nor its holding in PUD No. 1 foreclose
alternative interpretations.
In its discussion of the CWA, the Supreme Court in PUD No. 1 did
not analyze section 401 at ``Chevron step one'' or rely on ``the
unambiguous terms'' of the CWA to support its reading of section 401.
See Brand X, 545 U.S. at 982. Instead, the Court ``reasonably read''
section 401(d) ``as authorizing additional conditions and limitations
on the activity as a whole once the threshold condition, the existence
of a discharge, is satisfied.'' PUD No. 1, 511 U.S. at 712 (emphasis
added). To support what it considered to be a reasonable reading of
section 401(d), the Court looked at the EPA's 1971 certification
regulations at 40 CFR 121.2(a)(3) and related guidance available at
that time, PUD No. 1, 511 U.S. at 712, but the Court did not have
before it the EPA's interpretation of how sections 401(a) and 401(d)
could be harmonized. In fact, the Court either was not aware of or did
not mention that the EPA's 1971 certification regulations in place at
that time predated the 1972 CWA amendments and therefore contained
outdated terminology implementing what was functionally a different
statute. As described above, the EPA's 1971 certification regulations
were consistent with the text of the pre-1972 CWA, and they required a
State to certify that the ``activity'' will comply with the Act. The
1972 CWA amendments changed this language to require a State to certify
that the ``discharge'' will comply with the Act.
Based in part on what the EPA now recognizes was infirm footing,
the Court found that ``EPA's conclusion that activities--not merely
discharges--must comply with state water quality standards is a
reasonable interpretation of Sec. 401 and is entitled to deference.''
Id. (emphasis added). As amicus curiae in the Supreme Court, the United
States did not seek Chevron ``deference for the EPA's regulation in
[the PUD No. 1 case]'' or for the EPA's interpretation of section 401.
Id. at 729 (Thomas, J., dissenting). In fact, the United States' amicus
brief for the Court did not analyze or interpret the different
[[Page 42234]]
language in sections 401(a) and 401(d) and instead asserted that it was
unnecessary to harmonize the provisions to resolve the dispute. See
Brief for the United States as Amicus Curiae Supporting Affirmance, PUD
No. 1 of Jefferson County v. Washington Dep't of Ecology, No. 92-1911
at 12 n. 2 (Dec. 1993). The amicus brief asked the Court to analyze the
two undisputed discharges from the proposed federally licensed project
and to determine whether they would cause violations of the State's
water quality standards. Id. at 11-16.
Given the circumstances of the PUD No. 1 litigation, and the fact
that the Supreme Court did not analyze section 401 under Chevron step 1
or rely on unambiguous terms in the CWA to support its interpretation
of the statute, PUD No. 1 does not foreclose the Agency's
interpretation of section 401 in this final rule. See Brand X, 545 U.S.
at 982-83. The Supreme Court's ``choice of one reasonable reading'' of
section 401 does not prevent the EPA ``from later adopting a different
reasonable interpretation.'' \33\ Eurodif S.A., 555 U.S. at 315. An
agency may engage in ``a formal adjudication or notice-and-comment
rulemaking'' to articulate its interpretation of an ambiguous statute.
Christensen v. Harris County, 529 U.S. 576, 587 (2000). When it does,
courts apply ``Chevron-style'' deference to the agency's
interpretation. Id. That is exactly what the EPA is doing in this final
rule. The EPA has for the first time, holistically interpreted the text
of sections 401(a) and 401(d) to support this update to the Agency's
1971 certification regulations while ensuring consistency with the
plain language of the 1972 CWA.
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\33\ The EPA is not modifying the Agency's longstanding
interpretation of the Act that was confirmed by the Court in PUD No.
1 that ``a water quality standard must `consist of the designated
uses of the navigable waters involved and the water quality criteria
for such waters based upon such uses' '' and that ``a project that
does not comply with a designated use of the water does not comply
with the applicable water quality standards.'' 511 U.S. at 714-15
(emphasis in original; quoting 33 U.S.C. 1313(c)(2)(A)).
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c. Discharges From Point Sources to Waters of the United States
Based on the text, structure, and purpose of the Act, the history
of the 1972 CWA amendments, relevant legislative history, and
supporting case law, and informed by important policy considerations
and the Agency's expertise, the EPA has concluded that a certifying
authority's review and action under section 401 is limited to water
quality impacts to waters of the United States resulting from a
potential point source discharge from a proposed federally licensed or
permitted project. The text of section 401(a) clearly specifies that
certification is required for any federal license or permit to
``conduct any activity . . . which may result in any discharge into the
navigable waters'' (emphasis added). Prior interpretations extending
section 401 applicability beyond such waters conflict with and would
render meaningless the plain language of the statute. And although the
statute does not define with specificity the meaning of the unqualified
term discharge, interpreting section 401 to cover all discharges
without qualification would undercut the bedrock structure of the CWA
regulatory programs, which are focused on addressing point source
discharges to waters of the United States. CWA section 502(14) defines
``point source'' as ``any discernible, confined and discrete
conveyance, including but not limited to any pipe, ditch, channel,
tunnel, conduit, well, discrete fissure, container, rolling stock,
concentrated animal feeding operation, or vessel or other floating
craft, from which pollutants are or may be discharged.'' \34\
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\34\ In the section 404 context, point sources include
bulldozers, mechanized land clearing equipment, dredging equipment,
and the like. See, e.g., Avoyelles Sportsmen's League, Inc. v.
Marsh, 715 F.2d 897, 922 (5th Cir. 1983).
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As described in section II.F.1 of this notice, the CWA is
structured such that the federal government provides assistance,
technical support, and grant money to assist States in managing all of
the nation's waters. By contrast, the federal regulatory provisions,
including CWA sections 402 and 404, apply only to point source
discharges to waters of the United States. 33 U.S.C. 1362(7). Section
401 is the first section of Title IV of the CWA, titled Permits and
Licenses, and it requires water quality-related certification
conditions to be legally binding and federally enforceable conditions
of federal licenses and permits. Id. at 1341(d). Similar to the section
402 and 404 permit programs, section 401 is a core regulatory provision
of the CWA. Accordingly, the scope of its application is most
appropriately interpreted, consistent with the other federal regulatory
programs, as addressing point source discharges into waters of the
United States.
The EPA is not aware of any court decisions that have directly
addressed the scope of waters covered by section 401; however, the
plain text of section 401 is clear and EPA's interpretation is
supported by legislative history (see section II.G.1.b of this notice).
Additionally, public commenters noted that many state Attorneys General
submitted comments on the Agency's rulemaking to define ``waters of the
United States'' asserting that modifying that definition would modify
the scope of state review under section 401, further supporting the
EPA's interpretation that section 401 is limited to waters of the
United States.
In Oregon Natural Desert Association v. Dombeck, the Ninth Circuit
relied on the text and structure of section 401 to interpret the
meaning of ``discharge'' in section 401. 172 F.3d 1092 (9th Cir. 1998).
In that case, a citizen's organization challenged a decision by the
U.S. Forest Service to issue a permit to graze cattle on federal lands
without first obtaining a section 401 certification from the State of
Oregon. The government argued that a certification was not needed
because the ``unqualified'' term ``discharge''--as used in CWA section
401--is ``limited to point sources but includes both polluting and
nonpolluting releases.'' Id. at 1096. Finding that the 1972 amendments
to the CWA ``overhauled the regulation of water quality,'' the court
said that ``[d]irect federal regulation [under the CWA] now focuses on
reducing the level of effluent that flows from point sources.'' Id. The
court stated that the word ``discharge'' as used consistently in the
CWA refers to the release of effluent from a point source. Id. at 1098.
The court found that cattle--even if they wade in a stream--are not
point sources. Id. at 1098-99. Accordingly, the court held that
certification under section 401 was not required. Id. at 1099.
The EPA previously suggested that the scope of section 401 may
extend to nonpoint discharges to non-federal waters \35\ once the
requirement for the section 401 certification is triggered.
Specifically, in the EPA's now-withdrawn Interim Handbook, the Agency
included the following paragraphs,
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\35\ Non-federal waters refer to those waters that are not
waters of the United States.
The scope of waters of the U.S. protected under the CWA includes
traditionally navigable waters and also extends to include
territorial seas, tributaries to navigable waters, adjacent
wetlands, and other waters. Since Sec. 401 certification only
applies where there may be a discharge into waters of the U.S., how
states or tribes designate their own waters does not determine
whether Sec. 401 certification is required. Note, however, that
once Sec. 401 has been triggered due to a potential discharge into
a water of the U.S., additional waters may become a consideration in
the certification decision if it [sic] is an aquatic resource
addressed by
[[Page 42235]]
``other appropriate provisions of state [or tribal] law.''
* * * * *
Section 401 applies to any federal permit or license for an
activity that may discharge into a water of the U.S. The Ninth
Circuit Court of Appeals ruled that the discharge must be from a
point source, and agencies in other jurisdictions have generally
adopted the requirement. Once these thresholds are met, the scope of
analysis and potential conditions can be quite broad. As the U.S.
Supreme Court has held, once Sec. 401 is triggered, the certifying
state or tribe may consider and impose conditions on the project
activity in general, and not merely on the discharge, if necessary
to assure compliance with the CWA and with any other appropriate
requirement of state or tribal law.
Interim Handbook, 5, 18 (citations omitted). To support the first
referenced paragraph on the scope of waters, the Interim Handbook cited
section 401(d), presumably referring to the use of the term
``applicant'' rather than ``discharge'' used in section 401(a).\36\ To
support the second paragraph on the scope of discharges, the Interim
Handbook cited the PUD No. 1 and S.D. Warren Supreme Court decisions.
It appears that both paragraphs from the Agency's Interim Handbook
relied on the PUD No. 1 Court's interpretation of the ambiguity created
by the different language in sections 401(a) and 401(d).\37\
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\36\ Interim Handbook, at 5 n. 23. Tellingly, footnote 23 of the
Interim Handbook also states, ``Note that the Corps may consider a
401 certification as administratively denied where the certification
contains conditions that require the Corps to take an action outside
its statutory authority or are otherwise unacceptable. See, e.g.,
RGL 92-04, `Section 401 Water Quality Certification and Coastal Zone
Management Act Conditions for Nationwide Permits.''
\37\ The S.D. Warren decision did not analyze or adopt the PUD
No. 1 Court's analysis of sections 401(a) and 401(d).
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For many of the same reasons why the Agency is not interpreting the
use of the word ``applicant'' in section 401(d) as broadening the scope
of certification beyond the discharge itself, the Agency is also
declining to interpret section 401(d) as broadening the scope of waters
and the types of discharges to which the CWA federal regulatory
programs apply. As an initial matter, the Agency agrees with the Ninth
Circuit's analysis and holding in Dombeck that section 401
certification is not required for nonpoint source discharges. Oregon
Natural Desert Association v. Dombeck, 172 F.3d 1092, 1098-99 (9th Cir.
1998). Were the Agency to interpret the use in section 401(d) of the
term ``applicant'' instead of the term ``discharge'' as authorizing the
federal government to implement and enforce CWA conditions on, or that
affect, non-federal waters, that single word (``applicant'') would
effectively broaden the scope of the federal regulatory programs
enacted by the 1972 CWA amendments beyond the limits that Congress
intended. Such an interpretation could permit the application of the
CWA's regulatory programs, including section 401 certification
conditions that are enforced by federal agencies, to land and water
resources more appropriately subject to traditional State land use
planning authority where not otherwise preempted by federal law. See,
e.g., SWANCC, 531 U.S. at 172-73.
As described in section II.F.4.a.i of this notice and pursuant to
its authority to reasonably interpret ambiguous statutes to fill gaps
left by Congress, the EPA is interpreting the language in sections
401(a) and (d) differently than the Supreme Court did in PUD No. 1. The
Court's prior interpretation, that once a ``discharge'' triggers the
certification requirement in section 401(a) the certification itself
may cover the entire ``activity,'' was not based on the plain
unambiguous text of the statute, but rather was based on the Court's
own interpretation of ambiguous text in light of the interpretation of
the statute set forth in the 1971 certification regulations (see
section II.F.4.a.i of this notice). The EPA's interpretation under this
final rule is also based on a reasonable interpretation of the text,
structure, and legislative history of section 401 and is informed by
important policy considerations and the Agency's expertise, and the
Agency's current rule is not foreclosed by the Court's prior
interpretation. See Brand X, 545 U.S. at 982.
For the reasons above, the EPA is concluding that section 401 is a
regulatory provision that creates federally enforceable requirements,
and for this and other reasons, its application must be limited to
point source discharges into waters of the United States. This
interpretation is consistent with the text and structure of the CWA as
well as the principal purpose of this rulemaking, i.e., to ensure that
the EPA's regulations (including those defining a section 401
certification's scope) are consistent with the current CWA.\38\ For
further discussion on the Agency's interpretation and comments received
on discharges under section 401, see section III.A.2.a of this notice.
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\38\ Although the legislative history on section 401 sometimes
lacks clarity and can be internally inconsistent, the Agency's
interpretation is consistent with much of the legislative history
from the 1972 amendments. See, e.g., H.R. Rep. No. 92-911, at 124
(1972) (``It should be clearly noted that the certifications
required by section 401 are for activities which may result in any
discharge into navigable waters. It is not intended that State
certification is or will be required for discharges into the
contiguous zone or the oceans beyond the territorial seas.''); 118
Cong, Rec. 33,692, 33,698 (1972) (``[t]he Conferees agreed that a
State may attach to any Federally issued license or permit such
conditions as may be necessary to assure compliance with water
quality standards in that State.''); S. Rep. No. 92-411, at 69
(1971) (``This section is substantially 21(b) of existing law
amended to assure consistency with the bill's changed emphasis from
water quality standards to effluent limitations based on the
elimination of any discharge of pollutants.'' (parentheticals
omitted)); 117 Cong. Rec. 38,797, 38,855 (1971) (Mr Muskie:
``Sections 401 and 402 provide for controls over discharge.'')
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2. Timeline for Section 401 Certification Analysis
Based on the language of the CWA and consistent with the relevant
case law, the EPA is clarifying that a certifying authority must act on
a section 401 certification within a reasonable period of time, which
shall not exceed one year, and that there is no tolling provision to
stop the clock at any time.
The text of section 401 expressly states that a certifying
authority must act on a section 401 certification request within a
reasonable period of time, which shall not exceed one year. 33 U.S.C.
1341(a)(1). Importantly, as the words ``shall not exceed'' suggest, the
CWA does not guarantee that a certifying authority may take a full year
to act on a section 401 certification request. The certifying authority
may be subject to a shorter period of time, provided it is reasonable.
See Hoopa Valley Tribe v. FERC, 913 F.3d 1099, 1104 (DC Cir. 2019)
(``Thus, while a full year is the absolute maximum, it does not
preclude a finding of waiver prior to the passage of a full year.
Indeed, the [EPA]--the agency charged with administering the CWA--
generally finds a state's waiver after only six months.'' (citing 40
CFR 121.16)). The CWA's legislative history indicates that inclusion of
a maximum period of time was to ``insure that sheer inactivity by the
[certifying authority] will not frustrate the Federal application.''
H.R. Rep. No. 92-911, at 122 (1972).
The timeline for action on a section 401 certification must
conclude within a reasonable period of time (not to exceed one year)
after receipt of a certification request. Id.; 33 U.S.C. 1341(a)(1).
The CWA does not specify any legal requirements for what constitutes a
request or otherwise define the term. As discussed further in section
III.C, this final rule addresses that ambiguity to provide additional
clarity and regulatory certainty. Additionally,
[[Page 42236]]
the EPA has long recommended that a project proponent requiring a
federal license or permit subject to section 401 certification hold
early discussions with both the certifying authority and the federal
agency, to better understand the certification process and potential
data or information needs.
The CWA does not contain provisions for tolling the timeline for
any reason, including to request or receive additional information from
the project proponent. If the certifying authority has not acted on a
request for certification within the reasonable time period, the
certification requirement will be waived and the federal agency may
proceed to issue the license or permit.
The final rule provides for specific timeframes for certain
procedural requirements (e.g., pre-meeting filing requests, discussed
in final rule preamble section III.B; and public notice when EPA acts
as the certifying authority, discussed in final rule preamble section
III.H). Throughout this final rule, EPA intends that the term ``days''
refers to calendar days as opposed to business days. For further
discussion on the Agency's interpretation of the timeline for section
401 certification analysis and related comments, see section III.F of
this notice. This final rule is intended to provide greater clarity and
certainty and to address some of the delays and confusion associated
with the timing elements of the section 401 certification process.
III. Final Rule
This final rule is intended to make the Agency's regulations
consistent with the current text of CWA section 401, increase
efficiencies, and clarify aspects of CWA section 401 that have been
unclear or subject to differing legal interpretations in the past. The
Agency is replacing the entirety of the 1971 certification regulations
at 40 CFR part 121 with this final rule. The following sections further
explain the Agency's rationale for the final rule, provide a detailed
explanation and analysis for the substantive changes that the Agency is
finalizing, and respond to significant public comments received on the
proposed rule.
The EPA's 1971 certification regulations were issued when the
Agency was but a few months old and the CWA had not yet been amended to
include the material revisions to section 401.\39\ In modernizing 40
CFR part 121, this final rule recognizes and responds to significant
changes to the CWA that occurred after the 1971 regulations were
finalized, especially the 1972 and 1977 amendments to the CWA.
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\39\ See 36 FR 22487, Nov. 25, 1971, redesignated at 37 FR
21441, Oct. 11, 1972, further redesignated at 44 FR 32899, June 7,
1979; Reorganization Plan No. 3 of 1970 (creating the EPA), 84 Stat.
2086, effective Dec. 2, 1970.
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Updating the 1971 certification regulations to clarify
expectations, timelines, and deliverables also increases efficiencies.
Some aspects of the 1971 certification regulations have been
implemented differently by different authorities, likely because the
scope and timing of review were not clearly addressed in EPA's
regulations. While the EPA recognizes that States and Tribes have broad
authority to implement State and Tribal law to protect their water
quality, see 33 U.S.C. 1251(b), section 401 is a federal regulatory
program that contains limitations on when and how States and Tribes may
exercise this particular authority. This final rule modernizes and
clarifies the EPA's regulations and will help States, Tribes, federal
agencies, and project proponents know what is required and what to
expect during a section 401 certification process, thereby reducing
regulatory uncertainty. For further discussion on ways the final rule
will reduce regulatory uncertainty, see the Economic Analysis available
in the docket for this final rule.
The EPA's 1971 certification regulations did not fully address the
public notice requirements called for under CWA section 401(a)(1). The
EPA is finalizing public notice requirements applicable to the EPA as
the certifying authority but is not extending these requirements to
other certifying authorities. The EPA encourages certifying authorities
to consider how their public notice requirements can be developed or
modified to ensure timely decision-making and to work with federal
licensing and permitting agencies to minimize conflicts between State
program administration and the federally established reasonable period
of time.
Because the EPA has frequently received requests for information
regarding certifying authority requirements, the Agency solicited
comment on whether it would be appropriate or necessary to require
certifying authorities to submit their section 401 procedures and
regulations to the EPA for informational purposes. One commenter stated
that it would be useful for the EPA to compile procedures of certifying
authorities and make these publicly available in one location, while
another commenter stated that it was unnecessary and inappropriate for
the EPA to compile procedures of certifying authorities. Some
commenters stated that it is not necessary for certifying authorities
to submit their section 401 certification procedures and regulations to
the EPA. One commenter noted that their procedures are public
information available on the state website. Another commenter stated
that a regulation that requires submittal of section 401 procedures is
unnecessary and duplicative because the State already works with the
EPA on section 401 procedures.
The EPA has considered these comments, and the final rule does not
include a requirement for certifying authorities to submit their
procedures to the EPA. However, to promote transparency and regulatory
certainty, the EPA strongly encourages certifying authorities to make
their certification regulations and any ``water quality requirements''
that may be considered during a certification process available online.
In the interest of transparency, clarity, and public accessibility, the
EPA may consider compiling certifying authorities' procedures and water
quality requirements on its website in the future.
In addition to the substantive changes in the final rule described
below, the Agency made a number of revisions to streamline and clarify
the regulatory text, and to more closely align that text to the
language in section 401. These changes include revising the definitions
of ``Administrator'' and ``discharge''; replacing the language
``proposed discharge location'' in section 121.11(a) with ``facility or
activity'' for consistency with section 401; revising certain text in
sections 121.7(f), 121.12, and 121.16 for consistency with section 401;
and removing redundant language throughout the final rule.
A. When Section 401 Certification Is Required
1. What is the Agency finalizing?
Under this final rule, the requirement for a section 401
certification is triggered based on the potential for any federally
licensed or permitted activity to result in a discharge from a point
source into waters of the United States. Consistent with section
401(a)(1), section 121.2 of the final rule provides that:
Certification is required for any license or permit that authorizes
an activity that may result in a discharge.
This provision is modified from the proposal to provide greater
clarity regarding when a certification is
[[Page 42237]]
required, but the Agency does not intend for this change to alter the
meaning of the provision from the proposal. This final rule preamble
also clarifies in section III.M that certification also is required
before a federal agency issues a general license or permit which may
result in a discharge. As discussed further below, in the final rule
the term ``discharge'' is defined to mean a point source discharge into
a water of the United States, and the term ``license or permit'' is
defined to mean a license or permit issued by a federal agency to
conduct any activity which may result in a discharge. The final rule
reflects that section 401 is triggered by the potential for a discharge
to occur, rather than an actual discharge.
2. Summary of Final Rule Rationale and Public Comment
Section 121.2 of the final rule is consistent with the Agency's
longstanding interpretation and is not intended to alter the scope of
applicability established in the CWA.
a. ``Discharge''
In section 401 and under the final rule, the presence of, or
potential for, a discharge is a key element of when a water quality
certification is required. Consistent with the text of the statute,
under the final rule section 401 is triggered by the potential for a
discharge to occur, rather than the presence of an actual discharge.
The final rule defines the term ``discharge'' consistent with the
proposal but replaces the term ``navigable waters'' in the proposed
definition with ``waters of the United States'' in the final
definition. This change is not intended to change the meaning of the
definition; rather, it provides clarity and consistency across other
CWA programs.
Many commenters agreed that the requirement for a section 401
certification is triggered by the potential for a discharge from a
federally licensed or permitted activity. One commenter stated that the
EPA's reliance on an actual discharge would disregard the broad scope
of section 401, which is designed to consider all potential discharges
over the life of a federally licensed or permitted activity. One
commenter stated that the proposed definition of ``discharge'' does not
contemplate a potential discharge. The commenter asserted that such an
interpretation would conflict with the text of section 401 which states
that water quality certification applies to any ``federal license or
permit to conduct any activity . . . which may result in a discharge.''
The EPA agrees with commenters that the language of the statute
triggers the section 401 certification requirement based on a potential
discharge.\40\ Section 401 is different from other parts of the Act
\41\ and provides certifying authorities with a broad opportunity to
review proposed federally licensed or permitted projects that may
result in a discharge into waters of the United States within their
borders. The Agency does not agree that the concept of ``potential''
must be incorporated into the rule text definition of ``discharge''
itself; the final rule provision at section 121.2 clearly states that a
401 certification is required for ``an activity which may result in a
discharge'' (emphasis added).
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\40\ A certification is required for ``a Federal license or
permit to conduct any activity . . . which may result in any
discharge into the navigable waters . . .'' 33 U.S.C. 1341(a)(1)
(emphasis added).
\41\ See, e.g., National Pork Producers Council v. EPA, 635 F.3d
738, 751 (5th Cir. 2011) (holding that ``the EPA cannot impose a
duty to apply for a permit on a [concentrated animal feeding
operation] that `proposes to discharge' or any CAFO before there is
an actual discharge.''); Waterkeeper Alliance, Inc. v. EPA, 399 F.3d
486, 505 (2d Cir. 2005) (same).
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In the proposal, the EPA requested that certifying authorities and
project proponents submit comment on prior experiences with undertaking
the certification process and later determining that the proposed
federally licensed or permitted project would not result in an actual
discharge. The EPA also requested comment on whether there are specific
procedures that could be helpful in determining whether a proposed
federally licensed or permitted project will result in an actual
discharge, and how project proponents may establish for regulatory
purposes that there is no potential discharge and therefore no
requirement to pursue a section 401 certification. See 84 FR 44080. One
commenter supported allowing the certifying authority or project
proponent to determine, after the certification process is triggered,
that a section 401 certification is not required where there is no
actual or potential discharge. Another commenter expressed concern that
this would allow the project proponent to determine that a section 401
certification is no longer required if the project proponent
determines, after the section 401 certification process is triggered,
that there is no actual or potential discharge. Another commenter
stated that a project that is clearly defined early in the federal
licensing or permitting and certification processes would help project
proponents, certifying authorities, and federal agencies establish
whether there is a potential discharge, and therefore promote
compliance with section 401 obligations or clarify that 401
certification is not required. One commenter supported a process for
determining when a project with a potential for a discharge will result
in an actual discharge. A few commenters stated that a process for
determining whether or not there will be an actual discharge ignores
the statutory phrase ``may result in a discharge,'' and they asserted
that giving project proponents a role in such a process is improper
because they have no authority to find that section 401 would not
apply.
This final rule does not provide a process for certifying
authorities or project proponents to determine whether a federally
licensed or permitted project may have a potential or actual discharge.
However, the federal agencies whose licenses or permits may be subject
to section 401 should consider whether such procedures, if incorporated
into their implementing regulations, may provide additional clarity
within their licensing and permitting programs. The EPA observes that,
if a certifying authority or project proponent determines after the
certification process is triggered that there is no actual discharge
from the proposed federally licensed or permitted project and no
potential for a discharge, there is no longer a need to request or
obtain certification. The EPA notes that ultimately the project
proponent is responsible for obtaining all necessary permits and
authorizations, including a section 401 certification. If the federal
licensing or permitting agency determines that there is a potential for
a discharge, as part of its evaluation of the proposed project, it may
not issue the federal license or permit unless a section 401
certification is granted or waived by the certifying authority. If a
project proponent requests a section 401 certification and later
asserts that section 401 does not apply, the EPA recommends that the
project proponent discuss the matter with, and provide supporting
information and documentation to, the certifying authority and the
federal agency. As provided in section 401(b) and section 121.16 of the
final rule, the EPA is available to provide technical assistance
throughout the section 401 process when requested to do so.
The EPA has concluded that unlike other CWA regulatory provisions,
section 401 is triggered by the potential for any unqualified
discharge, rather than by a discharge of pollutants. This
interpretation, reflected in both the proposal and this final rule, is
consistent with the text of the statute
[[Page 42238]]
and with U.S. Supreme Court precedent. In S.D. Warren, the Court
considered whether discharges from a dam \42\ were sufficient to
trigger section 401, even if those discharges did not add pollutants to
waters of the United States. Because section 401 uses the term
discharge but the Act does not provide a specific definition for the
term,\43\ the Court applied its ordinary dictionary meaning, ``flowing
or issuing out.'' S.D. Warren Co. v. Maine Bd. of Envtl. Prot. et al.,
547 U.S. 370, 376 (2006). The Court concluded that Congress intended
this term to be broader than the term ``discharge of pollutants'' that
is used in other provisions of the Act, like section 402. See, e.g., 33
U.S.C. 1342, 1344; S.D. Warren, 547 U.S. at 380-81. For further
discussion of S.D. Warren, see section II.F.4.a.ii of this notice, and
for further discussion of discharges, see section III.A.2.a of this
notice. The Court held that discharges from the dam triggered section
401 because ``reading Sec. 401 to give `discharge' its common and
ordinary meaning preserves the state authority apparently intended.''
S.D. Warren, 547 U.S. at 387. The EPA's interpretation reflected in
this final rule is consistent with the Court's conclusion.
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\42\ In S.D. Warren, the Court was not asked to decide whether
the discharges from the dams were point source discharges.
\43\ The Act provides, ``The term `discharge' when used without
qualification includes a discharge of a pollutant, and a discharge
of pollutants.'' 33 U.S.C. 1362(16).
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Many public commenters addressed the proposed definition of
``discharge.'' Some commenters stated that the definition of
``discharge'' in the proposed rule should not contain the word
``discharge.'' Some commenters stated that the proposed rule's
definition of discharge is unnecessary because there is no ambiguity in
that statutory term. Many commenters cited S.D. Warren to argue that
the EPA's definition of ``discharge'' was too narrow, and that the rule
should define discharge by its common meaning, ``issuing or flowing
out.'' Several commenters were concerned that if discharge was defined
as being from a point source then the discharge would need to contain
pollutants, because of the CWA definition of ``point source.'' \44\ One
commenter recommended that ``discharge'' be defined as ``the specific
outflow from a point source into navigable waters.'' Another commenter
asserted that S.D. Warren was wrongly decided and that section 401
should be triggered only by discharges of pollutants.
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\44\ The CWA defines point source as ``any discernible, confined
and discrete conveyance . . . from which pollutants are or may be
discharged.'' 33 U.S.C. 1362(14) (emphasis added).
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The EPA has considered these comments and concludes that, given the
diverse interpretations presented in public comments, including a
definition of ``discharge'' in the section 401 certification
regulations will increase clarity. Consistent with the proposal, the
Agency has concluded that a discharge need not involve pollutants in
order to trigger section 401. The EPA disagrees with commenters who
asserted that a point source discharge necessarily requires a discharge
of pollutants. The definition of point source in section 502(14) of the
CWA provides that a point source is a conveyance from which pollutants
are or may be discharged. A discharge of pollutants is not required for
a conveyance to be considered a point source. As discussed immediately
above and in section III.A.2.a of this notice, the EPA's longstanding
position is that the term ``discharge'' as used in section 401 is
limited to point sources but includes releases regardless of whether
they contain pollutants. The Agency disagrees with commenters who
stated that using the term ``discharge'' within the definition of
``discharge'' creates confusion or ambiguity. Indeed, the final rule
definition is consistent with the CWA section 502(16) definition of
``discharge,'' which also contains the term ``discharge.'' The EPA also
disagrees with commenters who asserted that the proposed definition was
narrower than the Court's opinion in S.D. Warren. As noted above, the
final rule's definition is consistent with the Court's application of
the ordinary meaning of the term. Finally, the EPA disagrees with the
commenter's recommendation to define ``discharge'' as the specific
outflow from a point source into navigable waters. The EPA has
concluded that this language could be construed quite narrowly to mean
a discharge from a specific ``outfall'' such as a pipe or outlet, while
excluding discharges from dredge or fill projects.
One commenter requested that the EPA clarify that section 401
certification is required only where there is a discharge of pollutants
to a water of the United States, and not simply a withdrawal of water.
As discussed above, the EPA does not interpret section 401 as requiring
a discharge of pollutants. However, the EPA agrees with commenters that
a section 401 certification is not required for a water withdrawal that
has no associated potential for a point source discharge to a water of
the United States. Multiple court decisions have concluded that a water
withdrawal is not a discharge and therefore does not trigger the need
for a water quality certification.\45\
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\45\ See, e.g., North Carolina v. FERC, 112 F.3d 1175, 1187
(D.C. Cir. 1997) (holding that withdrawal of water from lake does
not constitute discharge for CWA section 401 purposes).
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b. ``From a Point Source''
The final rule provides that, to trigger section 401, a discharge
must be from a point source. Several commenters agreed that a section
401 certification is required only where there is a point source
discharge. A few commenters agreed that Title IV of the CWA focuses on
point source discharges, specifically in sections 402 and 404, leading
them to conclude that section 401 should apply only to point sources as
well. One commenter stated that the trigger for section 401 is
specifically a potential point source discharge, citing to Oregon
Natural Desert Ass'n v. Dombeck, 172 F.3d 1092 (9th Cir. 1998). Some
commenters stated that the Supreme Court in S.D. Warren held that the
certification requirement was not limited to discharges of pollutants,
but that the discharge must nonetheless be a point source discharge,
citing Dombeck. Other commenters also referred to S.D. Warren to assert
that the Supreme Court refused to limit the term ``discharge'' to only
include a point source discharge. These commenters stated that the
Supreme Court held that the term ``discharge of pollutants'' was
limited to point sources and the term ``discharge'' was significantly
broader. In doing so, many commenters took issue with the EPA's
reliance on Dombeck. One commenter cited Russello v. United States, 464
U.S. 16 (1983), to argue generically that ``when `Congress includes
particular language in one section of a statute but omits it in another
section of the same Act, it is generally presumed that Congress acts
intentionally and purposely in the disparate inclusion or exclusion.'
''
The final rule requirement that a discharge must be from a point
source to trigger section 401 is consistent with case law from the
Ninth Circuit, which concluded that the word ``discharge'' as used
consistently throughout the CWA refers to the release from a point
source, and that use is also appropriate for section 401. Dombeck, 172
F.3d at 1099. The EPA has consistently implemented the interpretation
of section 401 articulated by the Dombeck court and adopts the Ninth
Circuit's interpretation in this final rule. The interpretation that a
discharge must be a point source discharge is consistent with the
structure of the Act and with the other
[[Page 42239]]
CWA regulatory programs (see section III.A.2.a of this notice).\46\
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\46\ See, e.g., Briefs of the United States in ONDA v. Dombeck,
Nos. 97-3506, 97-35112, 97-35115 (9th Cir. 1997), and ONDA v. USFS,
No. 08-35205 (9th Cir. 2008).
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The EPA disagrees with commenters who asserted that the Supreme
Court in S.D. Warren specifically addressed whether a discharge must be
from a point source. The Court's focus in S.D. Warren was on whether
pollutants must be added to constitute a ``discharge.'' S.D. Warren,
547 U.S. at 376-87. See also ONDA v. USFS, 550 F.3d 778, 783-84 (9th
Cir. 2008) (noting that ``[t]he issue in S.D. Warren was narrowly
tailored to determine whether a discharge from a point source could
occur absent addition of any pollutant to the water emitted from the
dam turbines''). The Court stated that the term discharge is broader
than ``discharge of a pollutant'' and ``discharge of pollutants,'' but
noted that ``discharge'' is not defined in the statute. S.D. Warren,
547 U.S. at 376. The Court also noted that for purposes of section 401,
``neither the EPA nor FERC has formally settled the definition, or even
set out agency reasoning,'' and the Court therefore continued to rely
on the dictionary definition of the term to mean ``flowing or issuing
out'' or ``to emit; to give outlet to; to pour forth . . .'' Id. In
2008, after the S.D. Warren decision was issued, the Ninth Circuit was
asked to revisit its 1998 decision in Dombeck. In response, the Ninth
Circuit held that ``[n]either the ruling nor the reasoning in S.D.
Warren is inconsistent with this court's treatment of nonpoint sources
in Sec. 401 of the Act, as explained in Dombeck. Accordingly, the
principles of stare decisis apply, and this court need not revisit the
issue decided in Dombeck.'' ONDA v. USFS, 550 F.3d 778, 785 (9th Cir.
2008). The Agency agrees.
In this final rule, the EPA is formally establishing a definition
for the term ``discharge'' for purposes of CWA section 401 and setting
out its reasoning in support of the definition. The final rule's
definition is consistent with the Agency's longstanding interpretation
of the statute and with relevant Ninth Circuit case law, and nothing in
S.D. Warren or PUD No. 1 precludes the EPA from adopting the definition
in the final rule.\47\
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\47\ On April 23, 2020, the United States Supreme Court issued a
decision in County of Maui, Hawaii v. Hawaii Wildlife Fund, et al.,
No. 18-260, which addressed the question whether the Clean Water Act
requires a NPDES permit under section 402 of the Act when pollutants
originate from a point source but are conveyed to navigable waters
by groundwater. The Court held that ``the statute requires a permit
when there is a direct discharge from a point source into navigable
waters or when there is the functional equivalent of a direct
discharge.'' Op. at 15 (emphasis in original). The Court articulated
a number of factors that may prove relevant for purposes of section
402 permitting. Id. at 16. Consistent with the Court's decision, if
a discharge of a pollutant is determined to require a federal permit
under section 402 as the functional equivalent of a direct
discharge, it will also be subject to section 401 because, as
discussed above, the term ``discharge'' under section 401 includes a
discharge of a pollutant subject to section 402. S.D. Warren Co. v.
Maine Bd. of Envtl. Prot., 547 U.S. 370, 375 (2006) (citing 33
U.S.C. 1362(16)). This conclusion is consistent with the Court's
decision in Maui.
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c. ``Into a Water of the United States''
Consistent with the proposal, the final rule reflects that section
401 is triggered by a potential discharge into a water of the United
States. 33 U.S.C. 1341(a)(1), 1362(7). Potential discharges into State
or Tribal waters that are not waters of the United States do not
trigger the requirement to obtain section 401 certification. Id. at
1342(a)(1).
Many commenters agreed that certification is required where there
is a discharge into a water of the United States. Some of these
commenters agreed that section 401 would not apply to non-federal
waters. A couple of commenters expressed concern that by limiting the
requirement for a section 401 certification to activities that
discharge directly to waters of the United States, there would be many
federally permitted projects where section 401 certification would not
be required even though discharges from those projects could impact
State or Tribal waters. A few commenters argued that the EPA's
deference to States has been inconsistent, noting that the Agency's
proposed rulemaking to define ``waters of the United States'' placed
strong emphasis on States' authority to protect their water resources,
while the proposed section 401 rulemaking reduces States' authority to
protect their water resources. These commenters said that they had
difficulty reconciling the States' expanded role under the ``waters of
the United States'' rule with the diminished role of States in the
proposed rule.
The final rule's interpretation that a discharge must be into a
water of the United States to trigger the section 401 certification
requirement is consistent with the plain text of the statute, is
supported by the legislative history, and is consistent with other CWA
regulatory program requirements that apply to discharges to waters of
the United States, not discharges to State or Tribal waters. Id.; see
also H.R. Rep. No. 92-911, at 124 (1972) (``It should be clearly noted
that the certifications required by section 401 are for activities
which may result in any discharge into navigable waters.'') (emphasis
added); see also section III.A.2.a of this notice for discussion on
discharges to waters of the United States. The EPA disagrees with
commenters who suggested that this rule is inconsistent with the
recently finalized rule defining ``waters of the United States.'' Both
rules are intended to provide clarity on the scope of federal authority
and State or Tribal authority to regulate certain waters. The final
definition of ``waters of the United States'' reestablishes the
appropriate balance between waters subject to federal regulation and
those waters or features that are subject to exclusive State or Tribal
jurisdiction. As described further in section II.F of this notice,
section 401 provides a role for States and authorized Tribes to
participate in federal license or permitting processes, including those
in which they may otherwise be preempted by federal law. States and
Tribes retain authority to regulate and protect waters of the State or
Tribe in accordance with State and Tribal law and where not preempted
by federal law. As explained in detail in the proposed rule preamble,
section 401 is a federal regulatory provision, as certification
conditions are incorporated into federal licenses and permits and are
enforceable by the federal government. If section 401 was expanded to
cover activities with discharges to non-federal waters, such an
expansion would authorize the federal government to regulate waters and
features that are beyond the scope of CWA regulatory authority;
Congress did not intend these waters to be subject to federal
regulation.
d. Federal License or Permit
Section 401 certification requirements are triggered when a project
proponent applies for a federal license or permit to conduct an
activity which may result in any discharge into a water of the United
States. 33 U.S.C. 1341(a)(1). However, in those cases where a federal
agency discharges dredged or fill material into waters of the United
States but does not issue itself a license or permit, the Corps'
regulations require reasonable and appropriate efforts to demonstrate
compliance with effluent limitations and state water quality standards,
which typically includes seeking certification.\48\ Consistent with the
[[Page 42240]]
proposal, the final rule defines the term ``license or permit'' to mean
``any license or permit granted by an agency of the Federal Government
to conduct any activity which may result in a discharge.''
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\48\ See Appendix C of Engineer Regulation 1105-2-100; 33 CFR
335.2 (``[T]he Corps does not issue itself a CWA permit to authorize
Corps discharges of dredged material or fill material into U.S.
waters, but does apply the 404(b)(1) guidelines and other
substantive requirements of the CWA and other environmental
laws.'').
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The CWA does not list specific federal licenses and permits that
are subject to section 401 certification requirements. The EPA believes
that the most common examples of licenses or permits that may be
subject to section 401 certification are CWA section 402 NPDES permits
issued by EPA in States where the EPA administers the NPDES permitting
program; CWA section 404 permits for the discharge of dredged or fill
material and Rivers and Harbors Act sections 9 and 10 permits issued by
the Army Corps of Engineers; and hydropower and interstate natural gas
pipeline licenses issued by FERC. The final rule does not provide an
exclusive list of federal licenses and permits that may be subject to
section 401. Instead, the final rule focuses on whether there is
potential for the activity authorized by the federally issued license
or permit to result in a discharge from a point source into a water of
the United States.
A few commenters requested clarification on the requirement for a
federal license or permit to trigger the need for a section 401
certification. One commenter asserted that the proposal was unclear
because the proposed regulatory text did not tie the need for a section
401 certification to an application for a federal license or permit.
The EPA disagrees with the suggestion that the proposal does not tie
the need for a section 401 certification to the application for a
federal license or permit. Section 121.2 of the proposed rule stated
that ``any applicant for a license or permit to conduct any activity
which may result in a discharge shall provide the Federal agency a
certification from the certifying authority . . .'' As noted above, the
proposal and this final rule define the term ``license or permit'' as
one issued by a federal agency.
A few commenters suggested that additional language be added to the
proposed definition of ``discharge'' to clearly describe what
constitutes a point source, including language concerning equipment and
construction activities associated with the discharge of dredged or
fill material. The EPA believes that defining ``point source'' in the
final rule is unnecessary in light of the statutory definition (33
U.S.C. 1362(14)) and court decisions concluding that bulldozers,
mechanized land clearing machinery, and similar types of equipment used
for discharging dredge or fill material are ``point sources.'' \49\
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\49\ See, e.g., Avoyelles Sportsmen's League v. Marsh, 715 F.2d
897 (5th Cir. 1983); U.S. v. Larkins, 657 F.Supp. 76 (W.D. Kent.
1987), aff'd, 852 F.2d 189 (6th Cir. 1988).
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Another commenter asserted that States have required facilities to
obtain a section 401 certification where the facility has a permit from
a State with delegated authority under section 402. Section 401
certification is not required for State- or Tribally-issued permits
when the State or Tribe has assumed operation of the permit program in
lieu of the federal government.\50\ The CWA statutory language is clear
that the license or permit triggering the need for a section 401
certification must be a federal license or permit, that is, one issued
by a federal agency. Implementation of a State or Tribal permit program
in lieu of the federal program does not ``federalize'' the resulting
licenses or permits for purposes of section 401. Section 401
certification does not apply to those authorizations issued by the
State or Tribe.\51\ The CWA anticipates that States and Tribes issuing
those permits will ensure consistency with CWA provisions and other
appropriate requirements of State and Tribal law as part of their
permit application evaluation.
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\50\ State or Tribal implementation of a license or permit
program in lieu of the federal program, such as a CWA section 402
permit issued by an authorized state, does not federalize the
resulting licenses or permits and therefore does not trigger section
401 certification. This conclusion is supported by the legislative
history of CWA section 401, which noted that ``since permits granted
by States under section 402 are not Federal permits--but State
permits--the certification procedures are not applicable.'' H.R.
Rep. No. 92-911, at 127 (1972). The legislative history of the CWA
amendments of 1977, discussing state assumption of section 404, also
noted that ``[t]he conferees wish to emphasize that such a State
program is one which is established under State law and which
functions in lieu of the Federal program. It is not a delegation of
Federal authority.'' H.R. Rep. No. 95-830, at 104 (1977).
\51\ As described elsewhere in this notice, the Corps' existing
certification regulations provide a reasonable period of time of 60
days for federally issued CWA section 404 permits. 33 CFR
325.2(b)(1)(ii); see also final rule preamble section III.F. To the
extent that certifying authorities believe that this timeline is too
short to provide certification for a Federally issued section 404
permit, States are authorized to assume administration of that
program for certain waters. 40 CFR 233; see also Final Report of the
Assumable Waters Subcommittee (May 2017), available at https://www.epa.gov/cwa404g/nacept-assumable-waters-subcommittee-final-report-may-10-2017.
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One commenter noted that the proposal indicated that the Corps does
not process and issue permits for its own activities and stated that
federal agencies should be subject to the same certification request
submittal requirements as non-federal agency project proponents. In
response, the EPA notes that the CWA ties the requirement for a section
401 certification to a federal license or permit. As a result, in
circumstances where there is no federal license or permit, including
when federal agency activities do not require a license or permit,
section 401 certification is not required. Nonetheless, the Corps'
current regulations indicate that section 401 requires the Corps to
seek section 401 certification for dredge and fill projects involving a
discharge into waters of the United States, regardless of whether the
Corps issues itself a permit for those activities.\52\
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\52\ See 33 CFR 336.1(a)(1) (``The CWA requires the Corps to
seek state water quality certification for discharges of dredged or
fill material into waters of the U.S.'').
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B. Pre-Filing Meeting Request
1. What is the Agency finalizing?
The EPA proposed to establish a pre-filing meeting process when the
EPA is the certifying authority to ensure that the Agency receives
early notification of anticipated projects and can discuss information
needs with the project proponent. Many commenters stated that it would
be helpful for project proponents to request pre-filing meetings with
all certifying authorities (not just the EPA), although most commenters
did not say that certifying authorities should be required to accept
such meetings. In light of these comments, and because the benefits of
the pre-filing process are applicable regardless of the identity of the
certifying authority, the EPA is finalizing a requirement that all
project proponents, including federal agencies when they seek
certification for general licenses or permits, submit a request for a
meeting with the appropriate certifying authority at least 30 days
prior to submitting a certification request.\53\ The final rule
requires only that the project proponent request the pre-filing meeting
and leaves to the discretion of the certifying authority whether a pre-
filing meeting may be
[[Page 42241]]
necessary or appropriate for a particular project. The meeting request
itself provides advance notification to the certifying authority that a
certification request may be forthcoming and therefore promotes early
coordination, even when the certifying authority does not hold a pre-
filing meeting.
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\53\ The EPA recognizes that some activities conducted in
response to a hurricane or other similar event may require emergency
procedures that do not allow for compliance with pre-request meeting
procedures. Federal licensing and permitting agencies should
establish such emergency procedures by regulation to ensure that
project proponents, certifying authorities, and the public are made
aware of the types of circumstances that could prevent compliance
with ordinary pre-filing meeting request requirements. Nothing in
this final rule precludes federal agencies from establishing
emergency procedures to ensure continuation of operations or other
appropriate emergency procedures, including procedures that may not
allow for compliance with pre-request meeting procedures.
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2. Summary of Final Rule Rationale and Public Comment
The EPA is expanding the proposed pre-filing meeting request
requirement, and under this final rule, all project proponents,
including federal agencies when they seek certification for general
licenses or permits, must submit a request for a pre-filing meeting
with the appropriate certifying authority at least 30 days prior to
submitting a certification request. This requirement will ensure that
certifying authorities receive early notification and have an
opportunity to discuss the project and potential information needs with
the project proponent before the statutory timeframe for review begins.
The final rule also encourages the certifying authority to take actions
to initiate coordination with the Federal agency after receiving the
pre-filing meeting request.
In order to facilitate early engagement and coordination, and using
its discretion to interpret the term ``request'' as applied to
certification procedures, the EPA is finalizing a regulatory
requirement in section 121.4 of the final rule that all project
proponents must submit a request for a pre-filing meeting at least 30
days in advance of submitting a certification request. Under the final
rule, certifying authorities are given an opportunity to accept or host
such a pre-filing meeting, but they retain discretion to decline the
request or simply not respond. Under the final rule, if the certifying
authority does not respond to the request, the project proponent may
submit a certification request as long as it includes documentation, as
required in section 121.5 of the final rule, that it requested the pre-
filing meeting at least 30 days prior to submitting the certification
request.
In addition to requiring the project proponent to request a pre-
filing meeting, the proposed rule would have required EPA to respond
within a certain period of time and also required the parties to
discuss certain topics and to be prepared to share certain information
during the pre-filing meeting. The final rule no longer requires those
additional procedures and instead encourages certifying authorities,
project proponents and federal licensing and permitting agencies to
engage in early coordination. Under the final rule, if the certifying
authority grants the pre-filing meeting, the project proponent and the
certifying authority are encouraged to discuss the nature of the
proposed project and potential water quality effects. The final rule
also encourages the project proponent to provide a list of other
required State, interstate, Tribal, territorial, and federal
authorizations and to describe the anticipated timeline for
construction and operation. After receiving the pre-filing meeting
request, the certifying authority is encouraged to contact the federal
agency and to identify points of contact, so as to facilitate
information sharing between the certifying authority and Federal agency
throughout the certification process. In the final rule, the EPA
encourages these important steps to help promote an efficient
certification process. These recommendations are consistent with many
recommendations in EPA's 2019 Guidance (which EPA is rescinding in this
action, as no longer necessary in light of this final rule) as well as
with recommendations made in the proposed rule preamble.
The Agency believes that the term ``request'' as used in the
statute is broad enough to include an implied requirement that, as part
of the submission of a request for certification, a project proponent
also provide the certifying authority with advance notice that a
certification request is imminent. The relatively short time (no longer
than one year and possibly much less) that certifying authorities are
provided under the CWA to act on a certification request (or else waive
the certification requirements of section 401(a)) provides additional
justification in this context to interpret the term ``request for
certification'' to allow the EPA to require a pre-filing meeting
request.
Many commenters supported the EPA's proposal to require project
proponents to request pre-filing meetings. Several commenters supported
the proposed pre-filing process where the EPA is the certifying
authority, while others supported extending it to all certifying
authorities. Several commenters stated that such meetings, while useful
for a variety of purposes (e.g., identifying what information may be
needed from a project proponent), should not be mandatory. Other
commenters stated that such meetings should be used only for complex,
non-routine projects. Some commenters asserted that the pre-filing
process could penalize States who choose not to attend pre-filing
meetings, even though it may not be feasible or necessary in all
instances, and argued that the EPA should not seek to supplant a
State's expertise on when a pre-filing meeting is necessary. Several
commenters noted that some States have established their own pre-filing
meeting requirements and should be encouraged to develop their own
criteria, including choosing whether to hold such pre-filing meetings.
Additionally, some commenters felt that the proposed 30-day notice for
such meetings was too short, while another commenter requested that the
EPA provide ``safeguards'' to ensure that States do not use the pre-
filing meeting as an opportunity to request unreasonable information or
studies that would delay a certification request. Some commenters noted
that while likely to yield useful information, the proposed regulations
lack a means of enforcing the pre-filing procedures and asserted that
the process could reward applicants who fail to cooperate with pre-
filing procedures. Some commenters noted that the proposal did not
include expected outcomes from such early collaboration and asserted
that this could result in inadequate certification requests. Some
commenters stated that the EPA's proposal did not include sufficient
guidance on best practices for pre-filing meetings, such as what
information the project proponent should be prepared to share with the
certifying authority.
The EPA agrees with commenters who stated that pre-filing meetings
would generally improve early coordination and promote efficiency in
section 401 certification decision-making, although the utility of such
meetings could depend on the complexity of the project and resources of
the certifying authority. The EPA also agrees with commenters who
stated that pre-filing meetings under the final rule should have an
accountability mechanism, and thus the final rule requires the project
proponent to include documentation of its pre-filing meeting request in
any certification request filed with the certifying authority (see
section III.C of this notice). The EPA recommends that project
proponents submit a pre-filing meeting request in writing and maintain
a copy of the written request, as the final rule requires such
documentation to be submitted in a certification request. If a project
proponent does not submit a pre-filing meeting request or does not
maintain documentation that it made the request, the subsequent
certification request will not meet the requirements of the final rule,
and in such circumstances the reasonable period of time would not
start.
[[Page 42242]]
The final rule does not set a limit on how early a project
proponent may submit a pre-filing meeting request or initiate
discussions with a certifying authority in order to encourage early and
ongoing coordination between the project proponent and the certifying
authority. The Agency disagrees with the suggestion that a pre-filing
meeting requirement could delay a certification request. Even if the
certifying authority does not agree to meet, the project proponent is
free to submit a certification request 30 days after submitting the
meeting request. See section III.C of this notice. In some cases, a
project proponent may find it beneficial to engage with a certifying
authority well in advance of the 30-day pre-filing meeting period,
particularly for complex projects. The 30-day period after submittal of
the pre-filing meeting request and prior to the submission of a
certification request provides an opportunity for the project proponent
to verify whether a section 401 certification is required and for the
certifying authority to identify potential information, in addition to
the certification request requirements in this rule, that may be
necessary for the certifying authority to act on the certification
request. Ultimately, the Agency believes that this provision of the
final rule will allow for a more efficient and predictable
certification process for all parties.
Under the final rule, certifying authorities are not required to
grant pre-filing meeting requests. The EPA has determined that
certifying authorities are in the best position to determine when a
pre-filing meeting is necessary to help ensure that they receive all
necessary information to act on certification requests within the
reasonable period of time. The Agency encourages project proponents and
certifying authorities to use the pre-filing meeting to discuss the
proposed project and to determine what information is needed to enable
the certifying authority to act on the certification request in the
reasonable period of time. Additionally, certifying authorities and
project proponents may use the pre-filing meeting to discuss other
appropriate water quality requirements that may be applicable to the
certification request and any necessary procedural requirements (e.g.,
ascertain whether the State or Tribe requires any fees). The EPA
expects that certifying authorities may take advantage of a pre-filing
meeting request for larger or more complex projects and might choose to
decline the request for more routine and less complex projects. The
pre-filing meeting may be conducted in-person, or remotely (through
telephone, online, or other virtual platforms), as deemed appropriate
by the certifying authority.
Certifying authorities are encouraged to develop pre-filing meeting
procedures tailored to identify information that may be needed to
review and act on a certification request. Such procedures could vary
depending on the project type, project complexity, or the triggering
federal license or permit, to enable greater efficiency and
predictability in the certification process. The Agency emphasizes that
any pre-filing meeting procedures or pre-filing expectations developed
or promulgated by certifying authorities cannot modify the requirements
for a certification request established in this final rule. The EPA
also notes that any new State or Tribal pre-filing meeting procedures
may not be used to extend the 30-day timeline following a pre-filing
meeting request for project proponents to submit a certification
request, nor may pre-filing meeting procedures be used to extend or
modify the reasonable period of time established by a Federal agency.
The EPA believes that requiring a pre-filing meeting request too early
could be an abuse of the process and result in an unreasonable
extension of the reasonable period of time that Congress envisioned,
which is not to exceed one year. Rather, such procedures should be
focused on allowing both the project proponent and the certifying
authority an opportunity to develop a common understanding and
expectation of the types of information that may be necessary for a
certifying authority to act on a certification request consistent with
section 401 and this final rule.
Some commenters asserted that pre-filing meetings should not limit
a State's ability to request additional information after a
certification request has been made. Other commenters did not think
that pre-filing meetings should preclude project proponents from
withdrawing and resubmitting certification requests to extend the
reasonable period of time, which they stated is sometimes necessary for
complex projects. Under the final rule, the pre-filing meeting request
requirement does not affect a certifying authority's ability to request
additional information from a project proponent once the reasonable
period of time has started (see section III.F.2.a of this notice), but
such information requests cannot operate to extend the reasonable
period of time (see section III.F for further discussion on how
certifying authorities may request an extension to the reasonable
period of time from the federal agency). This requirement also does not
affect the ability of project proponents to withdraw a certification
request voluntarily (see section III.F of this notice). The Agency
disagrees with commenters who asserted that the pre-filing meeting
request requirement would penalize certifying authorities who choose
not to avail themselves of the pre-filing meeting; accepting a pre-
filing meeting is not a mandatory requirement. The Agency anticipates
that certifying authorities will act in good faith when evaluating pre-
filing meeting requests and identifying information they may need to
review and act on a certification request. The Agency notes that early
engagement and coordination, including participation in a pre-filing
meeting, may help increase the quality of information that is provided
by project proponents and may reduce the need for the certifying
authority to make additional information requests during the reasonable
period of time.
In addition to pre-filing meetings between certifying authorities
and project proponents, commenters also suggested a variety of ways in
which federal agencies could facilitate information-sharing prior to
the certifying authority's receiving a certification request. For
example, one commenter expressed support for advance coordination
between States and federal agencies to streamline federal licensing and
permitting actions. A couple of commenters suggested that federal
agencies should notify States and Tribes of projects that require a
section 401 certification as soon as possible. One of these commenters
stated that the coordination between State and federal environmental
review requirements and processes should be done without diminishing
section 401 certification authority. Another commenter objected to
federal agency use of pre-filing meetings to inform the duration of the
reasonable period of time for review for certification actions, unless
there were clear inputs and outcomes for such meetings.
The EPA recognizes that federal agencies are uniquely positioned to
promote pre-filing coordination with certifying authorities and with
project proponents, so as to harmonize project planning activities and
to promote timely action on certification requests. The Agency
acknowledges that other federal agencies may provide for pre-filing
discussions in their regulations, see, e.g., 18 CFR 5.1(d)(1) and 33
CFR 325.1(b), and recognizes that many certifying authorities and
federal agencies already have coordination
[[Page 42243]]
memos, memoranda of agreement, or other cooperative mechanisms in
place. The Agency is not finalizing specific requirements for federal
agency coordination with certifying authorities (except when federal
agencies are themselves seeking certification, see section III.M of
this notice). However, if there is a pre-application process required
or facilitated by the federal licensing or permitting agency and if the
timing of that process would allow the project proponent to request a
pre-filing meeting from the certifying authority at least 30 days
before submitting a certification request, then a joint meeting among
federal agencies, certifying authorities, and project proponents could
also be used as the pre-filing meeting for a certification request.
In general, the EPA encourages federal agencies to notify
certifying authorities as early as possible about proposed projects
that may require a section 401 certification. Additionally, the EPA
encourages federal agencies (1) to timely respond to requests from
certifying authorities for information concerning the proposed federal
license or permit, and (2) to the extent consistent with agency
regulations and procedures, provide technical and procedural assistance
to certifying authorities and project proponents upon request. The EPA
also encourages project proponents and certifying authorities to engage
in any additional pre-filing discussion opportunities that may
facilitate greater communication and information sharing, and therefore
a more efficient and informed certification decision.
C. Certification Request/Receipt
1. What is the Agency finalizing?
Under this final rule, a project proponent must submit a
certification request to a certifying authority to initiate an action
under section 401. Consistent with the text of the CWA, the final rule
provides that the statutory timeline for certification review starts
when the certifying authority receives a ``certification request,''
rather than when the certifying authority receives a ``complete
application'' or ``complete request'' as determined by the certifying
authority. After considering public comments, the final rule has been
revised to provide a general definition of ``certification request''
and provide two different lists of documents and information that must
be included in a certification request: One list for individual
licenses and permits and a separate list for the issuance of a general
license or permit. The certification request requirements, as well as
other provisions of the final rule tailored to the issuance of general
licenses and permits, are described in detail in section III.M of this
notice.
To better account for water quality certifications required for
general licenses or permits, the definition of ``project proponent''
has been modified as follows pursuant to section 121.1(j) of the final
rule:
Project proponent means the applicant for a license or permit or
the entity seeking certification.
This final rule's definition of ``project proponent'' extends all
of the substantive and procedural requirements in this final rule to
federal agencies seeking certification for a general license or permit.
Pursuant to section 121.1(c) of the final rule,
Certification request means a written, signed, and dated
communication that satisfies the requirements of section 121.5 (b) or
(c).
Section 121.5(b) of the final rule includes an enumerated list of
documents and information that must be included in a certification
request for an individual license or permit, including the seven
components from the proposed rule and two new components. A
certification request must include all components to start the
statutory clock. A certification request submitted for an individual
license or permit shall:
1. Identify the project proponent(s) and a point of contact;
2. identify the proposed project;
3. identify the applicable federal license or permit;
4. identify the location and nature of any potential discharge that
may result from the proposed project and the location of receiving
waters;
5. include a description of any methods and means proposed to
monitor the discharge and the equipment or measures planned to treat,
control, or manage the discharge;
6. include a list of all other federal, interstate, tribal, state,
territorial, or local agency authorizations required for the proposed
project, including all approvals or denials already received;
7. include documentation that a pre-filing meeting request was
submitted to the certifying authority at least 30 days prior to
submitting the certification request;
8. contain the following statement: `The project proponent hereby
certifies that all information contained herein is true, accurate, and
complete, to the best of my knowledge and belief'; and
9. contain the following statement: `The project proponent hereby
requests that the certifying authority review and take action on this
CWA 401 certification request within the applicable reasonable period
of time.'
The statutory reasonable period of time for a certifying authority
to act on a certification request begins when the certifying authority
is in ``receipt of such request.'' The EPA is finalizing the definition
of the term ``receipt'' as proposed:
Receipt means the date that a certification request is documented
as received by a certifying authority in accordance with applicable
submission procedures.
Together, these provisions will provide greater certainty for
project proponents, certifying authorities, and federal agencies
concerning when the reasonable period of time has started. Each of
these provisions is discussed in greater detail below.
2. Summary of Final Rule Rationale and Public Comment
The Act places the burden on the project proponent to obtain a
section 401 certification from a certifying authority in order to
receive a federal license or permit. As discussed in the preamble to
the proposed rule, the section 401 certification process begins on the
date when the certification request is received by a certifying
authority. The statute limits the time for a certifying authority to
act on a request as follows:
If the State, interstate agency, or Administrator, as the case
may be, fails or refuses to act on a request for certification,
within a reasonable period of time (which shall not exceed one year)
after receipt of such request, the certification requirements of
this subsection shall be waived with respect to such Federal
application.
33 U.S.C. 1341(a)(1) (emphasis added). The plain language of the
Act requires that the reasonable period of time to act on certification
not extend beyond one year after the receipt of the certification
request. The statute, however, does not define those terms. As
discussed in the preamble to the proposed rule, because they are not
defined and their precise meaning is ambiguous, these terms are
susceptible to different interpretations. This ambiguity has resulted
in inefficiencies in the certification process; individual
certification decisions that have extended beyond the statutory
reasonable period of time; regulatory uncertainty; and litigation. See
section II.F of this notice. As the Agency charged with administering
the CWA, the EPA is authorized to interpret through rulemaking
undefined terms, including those associated with CWA section 401
certifications. See Chevron,
[[Page 42244]]
U.S.A., Inc. v. Natural Resources Defense Council, Inc., 467 U.S. 837,
844 (1984). Given the large number of certification requests submitted
each year \54\ and the statutory requirement that those requests be
acted on within a reasonable period of time not to exceed one year, the
EPA is finalizing definitions for the terms ``certification request''
and ``receipt'' to provide project proponents, certifying authorities,
and federal agencies with clear regulatory text stating when the
statutory reasonable period of time begins.
---------------------------------------------------------------------------
\54\ See section 2 of the Economic Analysis.
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The EPA is finalizing a definition for ``certification request''
that requires a written, signed, and dated communication that satisfies
the requirements of section 121.5(b) or (c) of the final rule. A
certification request that meets the requirements of the final rule
begins the certifying authority's reasonable period of time. The
structure of the final rule is somewhat different than the proposal
because, as described above, the final rule contains two separate lists
for certification requests; however, the purpose and function of the
``certification request'' remains consistent with the proposal.
Commenters provided numerous recommendations for what should be
included in a certification request, including but not limited to
information on prior contamination at the project site, payment of
applicable fees, specific project proponent contacts, specific
geographic information, construction and mitigation plans, engineering
plans, sediment sampling plans, aquatic resources and their condition,
the characteristics of the discharge, description of all affected
wetlands and waters, State-listed species information and habitat
assessments, baseline data and information, and the complete federal
license or permit application, as well as a statement from the project
proponent that all information is true and correct. Conversely, a few
commenters recommended removing the specific components of a
``certification request'' and argued that the proposed information was
not necessary for a certifying authority to act on a request for
certification. The EPA considered all of these comments and made some
modifications in the final rule. The final definition of
``certification request'' requires that the project proponent's written
submission contain the components identified in either section 121.5(b)
or (c) of the final rule.
Section 121.5(b) of the final rule addresses certification requests
submitted by project proponents, as the term is defined in the final
rule, and it requires the seven components listed in the proposed
definition, with a slight modification in one component, as well as two
additional components: A statement that all information contained in
the request is true, accurate, and complete to the best of the project
proponent's knowledge, and documentation that a pre-filing meeting
request was submitted to the certifying authority at least 30 days
prior to submitting the certification request. These additional
components are discussed further below. The Agency has modified the
fourth factor in the final rule to require project proponents to
identify the location and the nature of any potential discharge that
may result from the proposed project and the location of receiving
waters. This modification clarifies that project proponents should
identify the nature of the discharge, including (as appropriate) the
potential volume, extent, or type of discharge associated with the
proposed project. This modification is similar to the modification made
in the factors to be considered by a federal agency when setting the
reasonable period of time. See section III.F for further discussion.
The inclusion of this information will provide the certifying authority
with clear notice that the project proponent has submitted a
certification request and a sufficient baseline of information to allow
it to begin its evaluation in a timely manner.
The Agency requested comment on whether it should include a
reference to ``any applicable fees'' among the components of its
definition of a certification request. Many commenters stated that a
certifying authority's applicable fees should be a required element in
the final rule. One commenter suggested that applicable fees for a
section 401 certification might be affected by the type of federal
license or permit for which they are applying. After considering all of
the public comments on this issue and conducting additional research
into whether and how certifying authorities may require fees for
section 401 certifications, the EPA has decided not to include a
reference to fees in the enumerated list of elements of a certification
request. States vary in how and when they require fees in the
certification process. They have different fee structures and different
requirements for the timing of paying a certification-related fee. The
Agency encourages the project proponent and the certifying authority to
discuss during the pre-filing meeting the certifying authority's fee
structure and the project proponent's obligation, if any, to pay a fee
related to the section 401 certification. Given the States' differing
practices in this area, the final rule does not include proof of fee
payment as a required component of a certification request to trigger
the statutory timeframe for State or Tribal action.
Consistent with the proposal, the final rule requires a project
proponent to identify the location of any potential discharge in the
certification request. To meet this requirement, the EPA recommends
that the project proponent provide locational information about the
extent of the project footprint and all potential discharge locations,
as shown on design drawings and plans. The EPA recommends that project
proponents be prepared to provide underlying geographic data such as
shapefiles or geodatabases. Alternatively, the project proponent should
consider identifying potential discharge locations on hard copy maps.
The Agency acknowledges that the appropriate format and method to
identify potential discharge locations may change with evolving
technology and recommends that project proponents and certifying
authorities discuss the best approach to providing the information
required for the certification request.
The EPA received comments from the public and feedback from other
federal agencies that the categories of information identified in the
proposed definition of certification request may not be appropriate for
a federal agency seeking section 401 certification for a general
license or permit. For example, at the time of certification, a federal
agency may not know the location of every potential discharge that may
in the future be covered under a general license or permit. In response
to these comments and to improve the utility and clarity of the final
rule, the Agency is also finalizing in section 121.5(c) of the final
rule a separate list of documents and information required for a
``certification request for issuance of a general license or permit.''
See section III.M of this notice for further discussion of the
certification process for general licenses or permits.
The Agency received public comments emphasizing the efficiencies
that can be gained by federal agencies issuing general licenses and
permits, such as general NPDES permits issued by the EPA and Nationwide
or Regional section 404 general permits issued by the Corps. A few
commenters stated that federal agencies should follow procedures that
are consistent with other project proponents when submitting
certification requests and
[[Page 42245]]
complying with other aspects of the rule. The EPA agrees with
commenters that consistent procedural and substantive requirements for
all water quality certifications would promote regulatory certainty for
project proponents, federal agencies, and certifying authorities and
has modified the final rule definition of ``project proponent'' to
promote consistent water quality certifications. Section 121.1(j) of
the final rule defines ``project proponent'' to mean ``the applicant
for a license or permit or the entity seeking certification.'' With
this modified definition, the final rule clarifies that federal
agencies that issue general licenses or permits must comply with all of
the procedural and substantive requirements of this final rule.
Consistent with the proposal, sections 121.5(b) and (c) of the
final rule include the following statement--``The project proponent
hereby requests that the certifying authority review and take action on
this CWA 401 certification request within the applicable reasonable
period of time.'' This requirement is intended to remove any potential
ambiguity on the part of the certifying authority about whether the
written request before it is, in fact, a ``certification request'' that
triggers the statutory timeline. One commenter noted that, if a project
proponent is uncertain whether the certifying authority will be able to
certify its project within the reasonable period of time, the project
proponent could submit a non-compliant certification request that omits
one or more components, which would prevent the reasonable period of
time clock from starting. The Agency agrees with this commenter that if
a project proponent does not submit a certification request as defined
at section 121.5(b) of the final rule, then the reasonable period of
time does not begin. The Agency encourages pre-filing meetings,
engagement, and information sharing between project proponents and
certifying authorities, but such engagement does not start the
reasonable period of time unless a certification request, as defined in
the final rule, is submitted to the certifying authority.
Sections 121.5(b) and (c) of the final rule include two additional
provisions that were not in the proposed rule: A statement that all
information contained in the certification request is true, accurate,
and complete to the best of the requester's knowledge and belief, and
documentation that a pre-filing meeting request was submitted to the
certifying authority at least 30 days prior to submitting the
certification request. Both requirements are intended to create
additional accountability on the part of the project proponent to
ensure that information submitted in a certification request accurately
reflects the proposed project, and to ensure that the project proponent
has complied with the requirement to request a pre-filing meeting with
the certification authority. If a certification request does not
include these components, it does not meet the conditions of section
121.5(b) or (c) of the final rule and it does not start the statutory
clock.
Notwithstanding the text of section 401(a)(1), which refers to a
``request for certification,'' some commenters asserted that requiring
a ``certification request,'' as opposed to a ``complete application,''
contravened congressional intent and cooperative federalism, and
represented a change in the EPA's longstanding practice. As discussed
in the preamble to the proposed rule, section 401 does not use the term
``complete application'' or prescribe what a ``certification request''
would require. The reference in prior EPA guidance to a ``complete
application,'' without explaining what an ``application'' must include,
has led to inconsistent and subjective determinations about the
sufficiency of certification request submittals. This, in turn, has
caused uncertainty about when the statutory reasonable period of time
begins to run. The Agency is authorized to interpret ambiguous
statutory terms, see Chevron, 467 U.S. at 844, and is finalizing what
it deems the most appropriate, reasonable interpretation of
``certification request'' to reduce uncertainty and enable project
proponents and certifying authorities to objectively and transparently
understand which submittals start the reasonable period of time.
Some commenters also asserted that a standardized definition of
``certification request'' cannot capture all of the kinds of
information necessary for the certifying authority to make an informed
decision on a certification request. They expressed concern that
project proponents would be incentivized to circumvent a certifying
authority's meaningful review by not providing additional information.
Additionally, some commenters suggested that certifying authorities
should be given the flexibility to develop their own definition of a
``request'' or ``application'' to meet their applicable State and
Tribal laws and needs. While the Agency acknowledges these commenter
concerns, the EPA disagrees. As discussed above, the Agency is
authorized to interpret the term ``certification request'' because the
Act does not define the term, nor does it prescribe the amount of
information that must be included in a certification request. See
Chevron, 467 U.S. at 844. In this final rule, the Agency is
interpreting ``certification request'' to include components that the
Agency believes are necessary to provide a certifying authority with
clear notice that a request has been submitted and a sufficient
baseline of information for the certifying authority to begin its
review. It is important to distinguish between the amount of
information appropriate to start the certifying authority's reasonable
period of time and the amount of information that may be necessary for
the certifying authority to take final action on a certification
request. The components of a ``certification request'' identified in
the final rule are intended to be sufficient information to start the
reasonable period of time but may not necessarily represent the
totality of information a certifying authority may need to act on a
certification request. Nothing in the final rule's definition of
``certification request'' precludes a project proponent from submitting
additional, relevant information or precludes a certifying authority
from requesting and evaluating additional information within the
reasonable period of time (see section III.H of this notice for
specific procedures when the EPA is the certifying authority). Indeed,
in many cases it may be in the interest of the project proponent and
may provide a more efficient certification process if relevant
information about the discharge and potential impacts to the receiving
waters is provided to the certification authority early in the
certification process.
As discussed in section III.B of this notice, the Agency is
finalizing a pre-filing meeting request requirement for all project
proponents, including federal agencies when they seek a section 401
certification for general licenses or permits. The Agency is including
a documentation requirement for the pre-filing meeting as a component
of a certification request to ensure that certifying authorities are
given an opportunity to engage in early discussions with project
proponents and federal agencies, if desired. The Agency encourages
project proponents and certifying authorities to use the pre-filing
meeting to discuss the proposed project and to determine what
information (if any), in addition to that required to be submitted as
part of the ``certification request,'' may be needed to enable the
certifying authority to take final action on the certification request
in the reasonable period of time. The
[[Page 42246]]
certifying authority may also take this opportunity to discuss any
other State or Tribal permits that may be applicable or required for
the proposed project.
Although some commenters requested that the Agency include more
detailed certification request components, the Agency believes
additional detailed information is best ascertained through pre-filing
meetings and engagement during the reasonable period of time. If pre-
filing meetings, discussions, and submittals during the reasonable
period of time fail to produce the information necessary for a
certifying authority to grant certification or grant certification with
conditions, the final rule reaffirms that certifying authorities retain
the ability to deny or waive a certification request. It is important
to reiterate that the burden is on the project proponent to submit a
certification request to the certifying authority and work
cooperatively to provide additional information as appropriate to
facilitate the certification process. Likewise, the burden is on the
certifying authority to evaluate the certification request in good
faith and to request information, documents, and materials that are
within the scope of section 401 as provided in this final rule and that
can be produced and evaluated within the reasonable period of time.
The Agency also disagrees with commenters who asserted that the
proposed definition of ``certification request'' would narrow State
authority, that it contradicted the goals and purpose of the CWA, and
that it was contrary to the plain language of section 401. The term
``request'' is not defined in the Act. As discussed above, the Agency
is authorized to interpret ambiguous statutory terms, and believes the
final definition of ``certification request'' and the provisions in
sections 121.5(b) and (c) of the final rule will provide needed clarity
and help ensure that certifying authorities have sufficient notice and
information to begin their evaluation of a certification request. The
final rule does not limit the ability of a certifying authority to
communicate with project proponents and to identify and request
additional information necessary to take an informed action on a
certification request in the reasonable period of time. Indeed, by
providing greater clarity on when the statutory reasonable period of
time begins and by encouraging early and constructive dialogue between
project proponents and certifying authorities, the final rule
facilitates a certifying authority's efforts to protect waters of the
United States within its borders within the timeframe mandated by
Congress.
A number of commenters provided examples of projects that had been
delayed because a certifying authority repeatedly requested additional
information before a certification request would be considered
``complete.'' These commenters asserted that these types of repeated
requests for additional information undermine the statutory requirement
to act on a certification request within a reasonable period of time,
not to exceed one year. Other commenters asserted that a certifying
authority cannot reasonably act on a certification request based only
on the information required by the proposed rule. The EPA acknowledges
the desire for certifying authorities to have all necessary information
as soon as possible in the certification process, but the Agency must
balance that desire while remaining loyal to the statutory requirement
for timely action on a request. The Agency believes that its final rule
strikes the appropriate balance by identifying the kinds of information
that provide a reasonable baseline about any project while recognizing
the ability of certifying authorities and project proponents to request
and provide additional information both before and after the review
clock starts.
The Agency also sees the value in finalizing certification request
components that are objective and do not require subjective
determinations by a certifying authority about whether the request
submittal requirements have been satisfied. A certification request
must have all components listed at section 121.5(b) or (c) of the final
rule to start the statutory reasonable period of time. If any of the
components of section 121.5(b) or (c) of the final rule is missing from
the certification request, the statutory reasonable period of time does
not start. With respect to the component of a certification request for
project proponents at section 121.5(b)(5) of the final rule, the EPA
acknowledges that not all proposed projects may be subject to
monitoring or treatment for a discharge (e.g., section 404 dredge or
fill permits rarely allow for a treatment option). The final rule has
been modified slightly to add the word ``manage'' to broaden the scope
of information that may be provided by project proponents. However, if
a project is not subject to monitoring, treatment, or management
requirements for its discharge, the project proponent should state that
in the certification request. The effect of such statement would be to
make that component inapplicable to that project. Many commenters
expressed concern that the proposed components of a certification
request would require subjective determination regarding the
appropriate level of detail. However, the Agency believes that the
final certification request components do not require a subjective
inquiry into their sufficiency or any inquiry beyond whether they have
been provided in the request.
The final rule requires a certification request to include a
statement that, to the best of the project proponent's knowledge and
belief, all information contained in the request is true, accurate, and
complete. This requirement is intended to ensure that project
proponents are making a good-faith effort to provide the certifying
authority with accurate information necessary to begin its evaluation
of the certification request. Additionally, as discussed above, the EPA
anticipates that the project proponent and the certifying authority
will coordinate information needs before and throughout the reasonable
period of time, if necessary. The EPA expects that the project
proponent both will provide a certification request that includes the
components identified in the final rule and will engage with the
certifying authority, as requested, to understand and respond to
appropriate and reasonable additional information requests that are
within the scope of section 401 and can be generated and reviewed
within the reasonable period of time. For its part, the EPA expects
that the certifying authority will act within the scope of section 401,
as provided in the CWA and in this final rule.
The EPA solicited comment on whether the Agency should generate a
standard form for all certification requests. Most commenters did not
support the development of a standard form and noted that most States
have their own forms for ``complete applications.'' At this time, the
Agency is not developing a standard form for project proponents to use
to submit certification requests, but notes that States and Tribes that
wish to continue using standard forms may choose to update those forms
to be consistent with the final definition of ``certification
request.'' The Agency may consider developing such forms in the future,
if useful to project proponents and certifying authorities.
Some commenters asked for clarification on the practical effect on
the review clock of a project proponent's independently withdrawing a
certification request by its own choice and not at the request of a
certifying authority. If a project proponent withdraws a certification
request because the project is no longer being
[[Page 42247]]
planned or if certain elements of the proposed project materially
change from what was originally proposed or from what is described or
analyzed in additional information submitted by the project proponent,
it is the EPA's interpretation that the certifying authority no longer
has an obligation to act on that request. To avoid scenarios like those
presented in Hoopa Valley and to address the EPA's policy concern that
section 401 certification delays also delay implementation of updated
State and Tribal water quality standards and other requirements, the
EPA expects that voluntary withdrawal by the project proponent will be
done sparingly and only in response to material modifications to the
project or if the project is no longer planned. In these circumstances,
if the project proponent seeks to obtain a certification in the future,
the project proponent must submit a new certification request. At a
minimum, the project proponent would have to wait 30 days before re-
submitting a certification request, because under the final rule
project proponents must request a pre-filing meeting at least 30 days
before submitting a certification request, and voluntary withdrawal by
a project proponent of a prior certification request does not obviate
this pre-filing requirement. For further discussion about project
proponent withdrawal, see section III.F of this notice.
Commenters asked the Agency to clarify when a change in the
proposed project would be so significant that it would require a new
request. Many commenters asserted that the proposed rule would prevent
extending the reasonable period of time even though the scope of the
project changes during the reasonable period of time. Other commenters
noted that the proposed rule did not account for project changes that
may result from the federal license or permit review processes. A
couple of commenters stated that the EPA should provide guidance to
federal agencies on when a new certification request would be necessary
based on the type and change in a project's scope, while one commenter
asked the Agency to clarify whether projects that change in scope or
design require a new certification.
After considering public comments on this issue, the final rule
does not identify each circumstance that may warrant the submission of
a new certification request because the Agency believes that such
circumstances are best addressed on a case-by-case basis. However, if
certain elements of the proposed project (e.g., the location of the
project or the nature of any potential discharge that may result)
change materially after a project proponent submits a certification
request, it may be reasonable for the project proponent to submit a new
certification request. Administrative changes, such as a change in the
point of contact or the list of other required permits, and minor
changes to the proposed project, such as those that do not change the
project footprint in a material way, should not warrant the submission
of a new certification request. The EPA recognizes that complex
projects that are subject to multi-year federal licensing or permitting
procedures may change over time as a result of those federal
procedures. From a practical standpoint, the EPA encourages project
proponents to maintain close coordination and communication with
certifying authorities and recommends that the project proponent
provide information about any project changes to the certifying
authority regardless of when the change occurred or whether a
certification has already been issued by the certifying authority. As
an additional measure, the Act and the final rule provide certifying
authorities with the opportunity to inspect a certified project prior
to initial operation to ensure the project will comply with the
certification.
The Agency is finalizing the definition of ``receipt'' as proposed,
so as to provide clarity for project proponents and certifying
authorities about when the certification request is deemed received and
the statutory clock begins. The CWA does not define the term ``receipt
of such request'' in section 401(a)(1), which has led States, Tribes,
and project proponents, as well as courts, to use different
definitions. ``Receipt of the request'' has been used alternately to
mean receipt by the certifying authority of the request in whatever
form it was submitted by the project proponent, or receipt of a
``complete application'' as determined by differing regulations
established by certifying authorities. The statute also does not
specify how requests are to be ``received'' by the certifying
authority--whether by mail, by electronic submission, or some other
means. The EPA understands that some certifying authorities have
established general submission procedures for project proponents to
follow when seeking State or Tribal licenses or permits. The EPA
encourages the use of consistent procedures for all submittals,
including section 401 certification requests. The final rule
requirement that certification requests be documented as received ``in
accordance with applicable submission procedures'' is intended to
recognize that certifying authorities may have different procedures for
submission of requests established in State or Tribal law. For
instance, some certifying authorities may require hard copy paper
submittals, while others may require or allow electronic submittals. If
the certifying authority accepts hard copy paper submittals, the EPA
recommends that the project proponents submitting a hard copy request
send the request via certified mail (or similar means) to confirm
receipt of the certification request. If the certifying authority
allows for electronic submittals, the EPA recommends that the project
proponent set up an electronic process to confirm receipt of the
request. Nothing in the final rule precludes the use of electronic
signatures when deemed appropriate by the certifying authority. The EPA
recommends that project proponents retain a copy of any written or
electronic confirmation of submission or receipt for their records.
One commenter disagreed with the suggestion that the word
``receipt'' is ambiguous but nonetheless agreed with the proposed rule
because, this commenter asserted, states have made efforts to evade the
one-year reasonable period of time. For the reasons explained above,
EPA disagrees with the commenter and concludes that the word is
ambiguous. Another commenter stated that section 401 does not require
certifying authorities to act ``upon'' receipt of a request, but
``after'' receipt of a request. This commenter is correct that the
statute requires certifying authorities to act on a certification
request ``within a reasonable period of time (which shall not exceed
one year) after receipt of such request.'' As discussed above, the
Agency has the authority to interpret ambiguous statutory terms,
including the terms ``request'' and ``receipt of such request.'' The
Agency has defined ``receipt'' to mean ``the date that a certification
request is documented as received by a certifying authority in
accordance with applicable submission procedures.'' Therefore, under
the EPA's final rule, the statutory clock begins on the date when the
certification request is documented as received by the certifying
authority.
Some commenters recommended that ``receipt'' should mean the date
when a certification request and all materials required by State or
Tribal law are documented as received by a certifying authority in
accordance with applicable submission procedures. The Agency disagrees
with these commenters. The EPA is aware that some States have
regulations establishing what should be in a request for certification
and when
[[Page 42248]]
it will be considered ``complete.'' For instance, the California Code
of Regulations states: ``Upon receipt of an application, it shall be
reviewed by the certifying agency to determine if it is complete. If
the application is incomplete, the applicant shall be notified in
writing no later than 30 days after receipt of the application, of any
additional information or action needed.'' Cal. Code Regs. tit. 23,
3835(a). The EPA also notes that some State regulations may require the
completion of certain processes, studies, or other regulatory
milestones before it will consider a certification request
``complete.'' Although the CWA provides flexibility for certifying
authorities to follow their own administrative procedures, particularly
for public notice and comment, see 33 U.S.C. 1341(a), these procedures
cannot be implemented in such a manner as to violate the CWA. The Act
requires the timeline for review to begin ``after receipt'' of a
certification request, notwithstanding any completeness determination
procedure, and it requires certifications to be processed within a
``reasonable period of time (which shall not exceed one year.'').
One principal goal of this rulemaking is to provide additional
clarity and certainty about the certification process, including when
the reasonable period of time begins. Establishing a consistent and
objective list of information necessary to start the statutory
reasonable period of time is necessary to achieve that goal. As
discussed above, the Agency has defined the elements necessary to
provide the certifying authority with sufficient notice and information
to begin to evaluate a request for certification. If there are
additional information needs aside from the finalized components
provided in a certification request, the certifying authority and
project proponent may discuss those needs during the pre-filing meeting
(see section III.B of this notice) or during the reasonable period of
time. The requirement that certification requests be received ``in
accordance with applicable submission procedures'' cannot be used by
certifying authorities to introduce unreasonable delay between when an
agency receives a certification request and when ``receipt'' occurs, as
this would contravene this final rule.
Many commenters expressed concern that the proposal lacked any
requirement that a request be ``administratively complete.'' One
commenter asserted that without a robust administrative record on which
to rely, certifying authorities would be more vulnerable to successful
challenges of their certification determinations. The final rule
establishes that a certification request is administratively complete
when it contains the items set forth in section 121.5(b) or (c). The
final rule requires that the project proponent request a pre-filing
meeting with the certifying authority before submitting the
certification request, thereby providing that certifying authority the
opportunity to discuss any additional informational needs it may have.
If a project proponent fails to supply the certifying authority with
information necessary to assure that the discharge from the proposed
project complies with the water quality requirements, the certifying
authority may so specify in a denial of the certification. If the
certifying authority requests information from the project proponent
that is beyond the scope of section 401, the project proponent's remedy
lies with a court of competent jurisdiction. To avoid situations where
the certifying authority requests information from project proponents
that cannot be developed and submitted within the reasonable period of
time, the EPA recommends that both the project proponent and the
certifying authority work in good faith, consistent with section 401,
and have early and sustained coordination and communication to
streamline the overall certification process.
Some commenters asserted that under the proposed rule, the federal
agency would not have a reliable way to determine whether a certifying
authority has received a request because the proposed rule required
only project proponents, and not certifying authorities, to alert
federal agencies when a project proponent had submitted a certification
request. Project proponents have the burden of requesting certification
from a certifying authority and for providing federal agencies with the
certification to help fulfill the requirements of a federal license or
permit. After reviewing public comments, the Agency has decided not to
finalize the requirement proposed at section 121.4(b) in order to
provide all interested parties with greater clarity and a common
understanding regarding the status of a certification request. To
effectuate notice of a certification request at the earliest point in
time, section 121.5(a) of the final rule requires a project proponent
to submit a certification request to the appropriate certifying
authority and the federal licensing or permitting agency concurrently.
Including this requirement in the final rule will provide the federal
agency with notification about a certification request and sufficient
information to determine the reasonable period of time for that
certification request. This process will also address commenter
concerns by providing federal agencies and certifying authorities with
a concurrent notice when a certification request is received. As
discussed above, the Agency recognizes that certifying authorities may
have different submission procedures and recommends that project
proponents submit copies to the federal agency in a manner consistent
with the certifying authority's submission procedures, to ensure that
the request is received at the same time. The final rule requires the
federal agency to communicate the reasonable period of time to the
certifying authority within 15 days of receiving the certification
request from the project proponent in accordance with section 121.5(a)
of the final rule. The EPA expects federal licensing and permitting
agencies to provide the notice required in this final rule and strongly
encourages federal agencies to promulgate or update agency-specific
regulations to implement CWA section 401 and this final rule. However,
in the unlikely event that the federal agency does not provide the
required notice, the EPA recommends that certifying authorities assume
that the federal agency's promulgated default reasonable period of time
applies (e.g., the Corps' 60 days). If the federal agency fails to
provide notification and has not promulgated a default or categorical
reasonable period of time, the Agency recommends that certifying
authorities assume the reasonable period of time expires one year from
the date the certification request was received. The Agency recommends
that all parties retain copies of certification requests for their
records in case there is any misunderstanding about the beginning of
the reasonable period of time.
EPA acknowledges that many States and Tribes have established their
own requirements for section 401 certification request submittals,
which may be different from or more extensive than the ``certification
request'' requirements set forth in this final rule. However, these
additional requirements should not be used to expand the certification
request requirements in this final rule, which are intended to
establish clear expectations for certifying authorities and project
proponents, and which provide a transparent and consistent framework
for when the reasonable period of time begins. The EPA notes that
certifying
[[Page 42249]]
authorities may update their existing section 401 certification
regulations to be consistent with the EPA's regulations. Additionally,
the EPA observes that certifying authorities may wish to work with
neighboring jurisdictions to develop regulations that are consistent
from State to State. This may be particularly useful for interstate
projects, like pipelines and transmission lines, requiring water
quality certifications from more than one State.
Some commenters requested additional clarification about when
project proponents should submit a certification request, relative to
the timelines in federal licenses or permits or other federal laws. One
commenter stated it would be helpful to specify a point in the federal
permitting timeline when project proponents should submit a
certification request. The commenter suggested that this point in time
should be based on when States would have adequate information to make
a certification decision. One commenter explained that if a State is
required to issue section 401 certification before NEPA environmental
documentation is complete and made available, the State would have to
initiate state environmental review before NEPA documents are
available, which is an unnecessarily burdensome approach for both the
State and the applicant. Other commenters noted that the proposed rule
could place an unnecessary burden on States and Tribes if an EIS
results in a no action alternative being chosen, but the State or Tribe
has already expended resources to complete a section 401 certification.
The EPA also observes that some federal permit or license procedures
can be lengthy and can result in project modifications in the early
stages of the process.
The Agency is not prescribing a specific point in a federal
licensing or permitting process when project proponents are required to
submit a certification request. The Agency is aware that FERC's
regulations already establish when during the hydropower licensing
process a project proponent may request certification. Specifically,
FERC's regulations require project proponents to complete a years-long
process that includes environmental studies and reviews before a
project proponent may request certification for that federal license.
See 18 CFR 5.22, 5.23. The Agency encourages all federal licensing and
permitting agencies to evaluate their programs and processes and to
consider promulgating or updating their section 401 implementing
regulations to specify when a section 401 certification request should
be submitted. Providing additional specificity and procedures for
project proponents may reduce the duplication of work between federal,
State and Tribal authorities and may make the certification process
more efficient. In the absence of formal guidance or rulemaking from
the appropriate federal licensing or permitting agency, the EPA
recommends that project proponents, certifying authorities, and federal
agencies coordinate and discuss the appropriate timing for a section
401 certification request in light of the federal licensing or
permitting process and other project approval requirements.
D. Certification Actions
1. What is the Agency finalizing?
Consistent with the text of the CWA, under the final rule a
certifying authority may take one of four actions pursuant to its
section 401 authority: Grant certification, grant certification with
conditions, deny certification, or waive its opportunity to provide a
certification. These actions are reflected in section 121.7 of the
final regulatory text. Any action by the certifying authority to grant,
grant with conditions, or deny a certification request must be within
the scope of certification (see section III.E of this notice), must be
completed within the established reasonable period of time (see section
III.F of this notice), and must otherwise be in accordance with section
401 of the CWA (see section III.G of this notice). Alternatively, a
certifying authority may expressly waive the certification requirement.
Under the final rule, certifying authorities may also implicitly waive
the certification requirement by failing or refusing to act (see
section III.G.2.d of this notice). All certification actions must be in
writing, and the contents and effects of such actions are discussed
below in section III.G of this notice. The final rule is consistent
with the Agency's longstanding interpretation of what actions may be
taken in response to a certification request.
2. Summary of Final Rule Rationale and Public Comment
Under the final rule, if the certifying authority determines that
the discharge from a proposed project will comply with specific
provisions enumerated in CWA section 401(a) and with other appropriate
State or Tribal water quality requirements, it may grant that
certification with or without conditions, as appropriate. To provide
additional clarity, section 121.1(n) of the final rule defines ``water
quality requirements'' (see section III.E.2.b of this notice for
further discussion of this definition). If the certifying authority
cannot certify (with or without conditions) that the discharge from a
proposed project will comply with ``water quality requirements,'' it
may either deny or waive certification. There may be multiple reasons
why a certifying authority is unable to certify, including a lack of
resources for reviewing the certification request, higher priority work
that the certifying authority must attend to, or evidence that the
discharge will not comply with ``water quality requirements.'' Under
the former circumstances, waiver would be appropriate; and under the
latter circumstance, denial would be appropriate.
a. Grant
When a certifying authority grants a section 401 certification, it
has concluded that the potential point source discharge into waters of
the United States from the proposed project will be consistent with
``water quality requirements.'' Granting certification allows the
federal agency to proceed with issuing the license or permit.
b. Grant With Conditions
If the certifying authority determines that the potential discharge
from a proposed project would be consistent with ``water quality
requirements'' only if certain conditions are met, the authority may
include such conditions in its certification. Where the certifying
authority grants certification with conditions in accordance with
section 401 and this final rule, the federal agency may proceed to
issue the license or permit. Certification conditions that satisfy the
requirements of this final rule must be incorporated into the federal
license or permit, if issued, and become federally enforceable.
c. Deny
A certifying authority may deny certification if it is unable to
certify that the potential discharge from a proposed project would be
consistent with ``water quality requirements'' as defined in this rule.
CWA section 401(a)(1) provides that ``[n]o license or permit shall be
granted if certification has been denied by the State, interstate
agency, or the Administrator, as the case may be.'' 33 U.S.C.
1341(a)(1).
This final rule reaffirms the ability of a project proponent to
submit a new certification request if a previous request is denied.
Some commenters agreed that it would always be proper to allow project
proponents to request certification again if the certifying
[[Page 42250]]
authority denied their previous request(s). Other commenters
interpreted this provision as preventing certifying authorities from
denying with prejudice and recommended that the final rule explicitly
allow certifying authorities the option to deny with prejudice. These
commenters asserted that denial with prejudice is a tool that preserves
certifying authorities' resources in cases where they are asked to
review substantially similar certification requests for the same
project once it has already determined that the project cannot comply
with water quality requirements. Some commenters argued that section
401 does not preclude certifying authorities from denying requests with
prejudice, and that regulations that precluded certifying authorities
from doing so would be inconsistent with the statute. Other commenters
noted that the statute does not explicitly authorize denial with
prejudice or prevent a project proponent from requesting a new section
401 certification after a request is denied. The EPA agrees that the
statute is silent on this issue. The EPA is not aware that any other
CWA program authorizes a permit application to be denied with prejudice
or explicitly precludes a permit applicant from re-applying for a
permit after an initial denial. For consistency with other CWA
programs, and because nothing in section 401 prohibits a project
proponent from submitting a new certification request after a denial is
issued, the EPA is finalizing this provision as proposed. In the event
that a denial is issued, the EPA recommends that the project proponent
discuss with the certifying authority whether project plans could be
altered or whether additional information could be developed to
demonstrate that the discharge from the proposed project will comply
with applicable water quality requirements upon submittal of a new
certification request.
d. Waive
Under the final rule, a certifying authority may waive its
opportunity to certify in two ways (see section 121.9(a) of the final
regulatory text). First, the certifying authority may waive expressly
by issuing a written statement that it is waiving certification.
Second, the certifying authority may implicitly or constructively waive
by failing or refusing to act within the reasonable period of time,
failing to act in accordance with the procedural requirements of
section 401, or failing to act in accordance with the requirements in
sections 121.7(c)-(e) of this rule.\55\ As discussed throughout this
final rule preamble, section 401 requires a certifying authority to act
on a certification request within a reasonable period of time, not to
exceed one year. If the certifying authority fails or refuses to act
within that reasonable period, the certification requirement will be
deemed waived by the federal licensing or permitting agency. Id. As
described further in section III.G.2.d of this notice, if a
certification grant, grant with conditions, or denial does not satisfy
the procedural requirements of this final rule, it is waived. When a
certifying authority waives the requirement for a certification, under
this final rule the federal agency may proceed to issue the license or
permit in accordance with its implementing regulations.
---------------------------------------------------------------------------
\55\ As noted elsewhere in this notice, waiver of a specific
certification condition does not waive the entire certification.
---------------------------------------------------------------------------
E. Appropriate Scope for Section 401 Certification Review
1. What is the Agency finalizing?
While Congress did not provide a single, clear, and unambiguous
definition of the appropriate scope of section 401, the text,
structure, and legislative history of the CWA (including the name of
the statute itself--the Federal Water Pollution Control Act Amendments
of 1972 or, more commonly, the Clean Water Act) demonstrate that
section 401 appropriately focuses on addressing water quality impacts
from potential or actual discharges from federally licensed or
permitted projects. The EPA, as the federal entity charged with
administering the CWA, has authority to reasonably resolve any
ambiguity in section 401's scope through notice and comment rulemaking.
To accomplish this, the Agency is finalizing as proposed section 121.3
of the regulatory text, which contains the following clear and concise
statement of the scope of certification:
The scope of a Clean Water Act section 401 certification is limited
to assuring that a discharge from a Federally licensed or permitted
activity will comply with water quality requirements.
The Agency is also finalizing definitions of the terms
``discharge'' and ``water quality requirements.'' Together, these
provisions of the final rule provide clarity on the scope of section
401. As explained in section III.A of this notice, based on the text
and structure of the Act, as well as the history of modifications
between the 1970 version and the 1972 amendments, the EPA has concluded
that section 401 is best interpreted as protecting water quality from
federally licensed or permitted activities that may result in point
source discharges into waters of the United States. The Agency is
finalizing the definition of discharge with only one change, replacing
``navigable waters'' with ``waters of the United States'':
Discharge for purposes of this part means a discharge from a point
source into a water of the United States.
The Agency chose to use the more commonly used term ``waters of the
United States'' to increase clarity in the final rule; however, this
does not change the meaning of the definition. As described further
below, the term ``water quality requirements'' is used throughout
section 401, and the term ``other appropriate requirements of State
law'' is used in section 401(d), but neither of these terms is defined
in the CWA. As the terms are used in the CWA, the EPA interprets
``other appropriate requirements of state law'' to mean a subset of
``water quality requirements.'' To give more specific meaning to this
ambiguous and undefined language, the final rule defines the term
``water quality requirements'' as follows:
Water quality requirements means applicable provisions of
sections 301, 302, 303, 306, and 307 of the Clean Water Act, and
state or tribal regulatory requirements for point source discharges
into waters of the United States.
The final rule uses the term ``water quality requirements'' to
define the universe of provisions that certifying authorities may
consider under sections 401(a) and 401(d). This definition has been
modified from the proposal to provide additional clarity.
The scope of certification in section 121.3 is the foundation of
the final rule. The scope is based on the text, structure, and
legislative history of the CWA, is informed by important policy
considerations and the Agency's expertise, and informs all other
provisions of the final rule. The scope of certification provides
clarity to certifying authorities, federal agencies, and project
proponents regarding the nature and breadth of the environmental review
that is expected and the type of information that may reasonably be
needed to review a certification request. The scope applies to all
actions on a certification request, including a decision to grant,
grant with conditions, or deny. The scope of certification also helps
inform what may be a reasonable period of time for a certifying
authority to review and act on a certification request.
[[Page 42251]]
To help ensure that section 401 certification actions are taken
within the scope of certification, the EPA is finalizing certain
requirements for certifications in section 121.7(c) of the final rule,
certification conditions in section 121.7(d) of the final rule, and
denials in section 121.7(e) of the final rule. For further discussion
of the contents and effects of certification conditions and denials,
see section III.G of this notice.
2. Summary of Final Rule Rationale and Public Comment
The Agency is finalizing as proposed the scope of certification in
section 121.3 of the final rule. Consistent with the proposal, the
scope of a section 401 certification in the final rule is limited to
assuring that a ``discharge'' from a federally licensed or permitted
activity--rather than the activity as a whole--``will comply'' with
``water quality requirements.'' The definition of ``water quality
requirements'' has been modified in the final rule to provide
additional clarity.
a. Activity Versus Discharge
The Agency is finalizing the rule as proposed, focusing the scope
of section 401 on the discharge from a federally licensed or permitted
activity, as opposed to the activity as a whole. As described in
section II.G.1.b of this notice, section 401(a) explicitly provides
that the certifying authority, described as ``the State in which the
discharge originates or will originate,'' must certify that ``any such
discharge will comply with the applicable provisions of sections 301,
302, 303, 306 and 307 of this Act'' (emphasis added). The plain
language of section 401(a) therefore directs authorities to certify
that the discharge resulting from the proposed federally licensed or
permitted project will comply with the CWA. Although section 401(d)
authorizes a certifying authority to establish conditions to assure
that the ``applicant'' will comply with applicable water quality
requirements, the EPA does not interpret the use of ``applicant'' in
section 401(d) as broadening the scope beyond consideration of water
quality impacts from the ``discharge,'' as set out in section 401(a).
Some commenters asserted that the proposed scope of review for
section 401 conflicts with the language of the CWA, applicable case
law, and the legislative history of the CWA. These commenters asserted
that the proper scope of section 401 should include all water quality
impacts from the federally licensed or permitted activity or the
project as a whole. Many commenters relied on the Supreme Court's
rationale in PUD No. 1 and argued that the plain language of section
401(d) is unambiguous and reasonably read as authorizing conditions and
limitations on the activity as a whole. Commenters asserted that the
plain meaning of the statutory language is clear, as is the legislative
intent, and further asserted that the EPA's reliance on Chevron is
misplaced. Commenters claimed that the Court in PUD No. 1 found the
statutory language unambiguous and analyzed section 401 under Chevron
step 1 and therefore, they argue, Brand X does not support EPA's
reanalysis of the statutory language in a manner contrary to the PUD
No. 1 opinion. These commenters asserted that even if it was not a
Chevron step 1 analysis, the Court's majority opinion is a reasonable,
holistic reading of section 401. These commenters also asserted that
the Court did not rely on the EPA's interpretation of the statute, but
relied on the plain language of the statute and therefore, they argue,
Brand X does not support the EPA's reanalysis of the statutory language
in a manner contrary to PUD. No. 1. Some commenters also asserted that
the proposed scope of certification improperly departs from the EPA's
longstanding interpretation without providing an adequate
justification.
Other commenters agreed with the EPA's interpretation of the
statutory language and case law analysis in the proposed rule preamble,
including the interpretation of the scope of certification, and agreed
that section 401 is a limited grant of federal authority to States and
Tribes. These commenters found the EPA's interpretation of section 401
reasonable despite their view that it was inconsistent with the
majority opinion in PUD No.1. These commenters also observed that the
Court in PUD No.1 did not have the benefit of an EPA interpretation of
the 1972 version of section 401.
The Agency disagrees with commenters who asserted that the proposed
scope of certification conflicts with the CWA, case law, and
legislative history, and disagrees with the contention that the
proposed scope was not supported by adequate justification. The scope
of certification in the final rule is based on the EPA's holistic
examination of section 401 and the legislative history. Congress'
change in section 401(a) from ``activity'' to ``discharge'' in the 1972
amendments reflects the ``total restructuring'' and ``complete
rewriting'' of the existing statutory framework in 1972 that resulted
in the core provisions of the CWA that regulate discharges into waters
of the United States. See City of Milwaukee v. Illinois, 451 U.S. 304,
317 (1981) (quoting legislative history of 1972 amendments). See also
County of Maui, Hawaii v. Hawaii Wildlife Fund, et al., No. 18-260, Op.
at 2 (April 23, 2020). The final rule gives due weight to Congress'
intentional choice to change the language in section 401(a) to ensure
that ``discharges'' from federally licensed or permitted activities,
rather than the activity as a whole, comply with appropriate water
quality requirements.
The Agency also disagrees with commenters who asserted that the
scope of certification is expressed unambiguously in section 401. As
demonstrated by the variation in public comments received, section 401
is susceptible to a multitude of interpretations. The EPA also
disagrees with the suggestion that the PUD No. 1 Court found section
401 to be unambiguous. Nowhere in the opinion does the Court conclude
that section 401 is unambiguous. In fact, the Supreme Court in PUD No.
1 offered its own interpretation of the ambiguous language in section
401 when it ``reasonably read'' the scope of section 401 to allow
conditions and limitations on the activity as a whole. As discussed in
detail in section II.F.4.a.i of this notice, although the Court did not
articulate a Chevron step one or step two analysis in its decision, the
Court did reference EPA's 1971 certification regulations with approval
and concluded that the EPA's ``reasonable interpretation'' (based on
those regulations) is entitled to deference. Id. The Court further
found the EPA's regulations to be consistent with the Court's own
reasonable reading of the language of sections 401(a) and (d). Id. at
712. As discussed in section II.F.4.a.i of this notice, the Court's
``reasonable reading'' of a statute undercuts any argument that the
statute's text or meaning is unambiguous.
For the first time, the EPA has presented in this final rule the
Agency's interpretation and analysis of section 401. The Agency's
interpretation of the scope of section 401 as presented in section
121.3 of this final rule is not foreclosed by the holding in PUD No. 1.
The Court's conclusion that section 401 applied to the activity as a
whole, rather than the discharge, did not follow from the unambiguous
terms of the statute. Nat'l Cable & Telecomm. Ass'n v. Brand X internet
Serv., 545 U.S. 967, 982 (2005). The scope of certification in section
121.3 of this final rule is permissible and is based on a reasonable
interpretation of the ambiguity created
[[Page 42252]]
by the different language Congress used in sections 401(a) and 401(d)
of the Act.
Some commenters supported the alternative interpretation presented
in the proposed rule to the effect that only the CWA sections
enumerated in section 401(a) may be used as a basis for a water quality
certification denial, while section 401(d) lists the considerations for
applying conditions to a granted water quality certification. These
commenters stated that this approach reflects the plain language of the
CWA, and therefore that ``any other appropriate requirement of State
law'' could be considered only when applying conditions to a water
quality certification and cannot be grounds for a denial. Other
commenters stated that section 401(a) and section 401(d) do not and
have never been interpreted to have different scopes. After considering
all public comments on this and other issues, the Agency is not
finalizing the proposed alternative interpretation. The EPA believes
that interpreting section 401 as establishing different standards for
issuing a denial under section 401(a) and for requiring conditions
under section 401(d) is likely to lead to implementation challenges,
including confusion by project proponents, certifying authorities and
federal licensing and permitting agencies. Moreover, if a certifying
authority determines that it must add conditions under section 401(d)
to justify a grant of certification under section 401(a), that is
equivalent to deciding that--without those conditions--it must deny
certification. The standard is therefore essentially the same. As
explained above in this section and in section II.F.4.a.i of this
notice, the Agency is finalizing what it has determined to be the most
appropriate, reasonable interpretation of section 401 that is based on
a holistic analysis of section 401, the entirety of the CWA, and the
legislative history.
Some commenters argued that the focus of the CWA 1972 amendments on
discharges does not override what they assert are the plain terms of
section 401 and accused the EPA of selectively picking language to
support a narrower scope. Some commenters disagreed with the EPA's view
that the proposed rule is necessary to update EPA's certification
regulations to conform with the 1972 CWA amendments, and they
maintained that the EPA's reading of the statute is inconsistent with
Supreme Court precedent. Other commenters agreed that the proposed rule
is necessary, as the existing water quality certification regulations
were promulgated prior to the 1972 CWA amendments, and these commenters
agreed that the conflicting interpretations that have followed the
original promulgation need to be addressed through revised regulations.
For the reasons explained in section II.F of this notice, the EPA
concludes that the existing certification regulations must be updated
to reflect the language of the 1972 CWA amendments. This final rule
reflects the EPA's holistic review of the CWA statutory text, the
history of that text, and legislative history, and is informed by
relevant case law. The EPA acknowledges that the final rule's focus on
discharges, as opposed to the activity as a whole, is not consistent
with the majority opinion in PUD No. 1; however, the Agency's rationale
supporting its interpretation is grounded in the text of the statute,
gives due weight to word choices made by Congress, and is clearly
explained in the proposed and final rule preambles.
Some commenters asserted that the proposed rule was inconsistent
with other holdings in PUD No. 1, including that (1) States could
condition a certification on any limitations necessary to ensure
compliance with State water quality standards or other appropriate
requirements of State law; (2) a minimum flow condition was an
appropriate requirement of State law; and (3) a State's authority to
impose minimum flow requirements would not be limited on the theory
that it interfered with FERC's authority to license hydroelectric
projects. The EPA disagrees with these commenters. First, neither the
proposed rule nor the final rule prohibits water quality-related
certification conditions that are necessary to assure compliance with
appropriate State or Tribal law. Rather, the rule clarifies the scope
of laws that are appropriate for consideration and as the basis for
certification conditions. As described in this section of the notice,
the EPA made some changes in the final rule to provide additional
clarity and regulatory certainty. Second, neither the proposed rule nor
the final rule address minimum flow issues.
Some commenters asserted it was inappropriate for the proposed rule
to rely on Justice Thomas' ``nonbinding'' dissent in PUD No. 1 instead
of the holding of the majority opinion. One commenter suggested that
reliance on the dissent exposes the EPA to legal challenge, injecting
even more uncertainty into water quality certification programs. For
the reasons explained in sections II.F.4.a.i, the EPA disagrees with
these commenters. The EPA is not relying on any single judicial opinion
for its interpretation of ambiguous statutory terms in this final rule.
Rather, the final rule reflects the EPA's holistic analysis of the
text, structure, and history of CWA section 401, informed by the
Agency's expertise developed over nearly 50 years of implementing the
CWA.
Commenters asserted that the proposed rule would weaken the ability
of States and Tribes to protect water quality, and some commenters
asserted that the proposed rule would lead to negative impacts to the
environment and public health. Some commenters asserted that the
purpose of the rule is not consistent with the CWA's goal of protecting
and enhancing the quality of the nation's waters. These commenters
maintained that the proposed rule would not facilitate States' and
Tribes' ability to carry out their roles and responsibilities under the
CWA. Some commenters asserted that most federally licensed or permitted
projects may result in water quality impacts beyond just those from a
point source discharge, and argued that the appropriate scope of the
certification is the activity and not only the discharge. These
commenters provided examples of project impacts that they asserted may
affect water quality but would be tangential to the discharge itself,
including increased water withdrawals, releasing pollutants into
groundwater, increased erosion and sedimentation, reduced stormwater
infiltration, disconnecting ecosystems, and harming endangered species.
Other commenters expressed concern that limiting the scope of section
401 to discharges would not allow States and Tribes to address indirect
impacts from the project, such as impacts resulting from hydrological
changes or increases in impervious surfaces that result in high-
velocity runoff events that can deposit sediment or other pollutants
into waterways.
The Agency recognizes the importance of protecting water quality
and that aquatic resources serve a variety of important functions for
protection of overall water quality. Ultimately, the Agency's
interpretation of section 401 is a legal interpretation that has been
established within the overall framework and construct of the CWA,
informed by important policy considerations and the Agency's expertise.
The purpose of this rulemaking is to provide a clear articulation of
what is authorized by CWA section 401, including the appropriate
procedures and scope of decision-making for water quality
certifications, that is supported by a robust and comprehensive legal
analysis of the statute. The federal licenses and permits that are
subject to section 401 are also subject to additional federal agency
statutory reviews, including the
[[Page 42253]]
National Environmental Policy Act, the Endangered Species Act, and the
National Historic Preservation Act, all of which are intended to
provide a comprehensive environmental evaluation of potential impacts
from a proposed project. In addition, where applicable, the CWA's
longstanding regulatory permitting programs, like those under sections
402 and 404, will continue to address water quality issues related to
the discharge of pollutants into waters of the United States, and the
CWA's non-regulatory measures, like protection of water quality from
nonpoint sources of pollution under section 319, will continue to
address pollution of water generally to achieve the objective of
restoring and maintaining the chemical, physical, and biological
integrity of the nation's waters. Section 401, on the other hand,
provides specific and defined authority for States and Tribes to
protect their water quality in the context of a federal licensing and
permitting process, including those processes in which State or Tribal
authority may otherwise be entirely preempted by federal law. The
language of section 401 makes it clear that this authority is limited
and does not broadly encompass all potential environmental impacts from
a project.
Some commenters requested examples of what considerations would be
outside the scope of certification, based on the Agency's limiting the
scope of certification to discharges, rather than to the entire
activity or project. Commenters mentioned specific considerations that
they believed should be excluded from the scope of certification in the
regulatory text, such as effects caused by the presence of pollutants
in a discharge that are not attributable to the discharge from a
federally licensed activity, effects attributable to features of the
permitted activity besides the discharge, and effects caused by the
absence or reduction of discharge. The Agency generally agrees that
such considerations would be beyond the scope of certification as
articulated in this final rule; however, the Agency is not modifying
the regulatory text to reflect these specific considerations, as there
may be unique project-specific facts or circumstances that must inform
whether a particular impact is caused by the discharge, as defined in
this final rule.
b. Water Quality Requirements
Under the final rule, the term ``water quality requirements'' means
applicable effluent limitations for new and existing sources (CWA
sections 301, 302, and 306), water quality standards (section 303),
toxic pretreatment effluent standards (section 307), and State or
Tribal regulatory requirements for point source discharges into waters
of the United States, including those more stringent than federal
standards. The definition in the final rule has been modified from the
proposal to provide additional clarity.
The term ``water quality requirements'' is used throughout section
401, and the term ``other appropriate requirements of State law'' is
used in section 401(d), but neither of these terms is defined in the
CWA.\56\ Because the EPA interprets ``other appropriate requirements of
state law'' to be a subset of ``water quality requirements,'' the final
rule uses the term ``water quality requirements'' to define the
universe of provisions that certifying authorities may consider when
evaluating a certification request pursuant to CWA sections 401(a) and
401(d). The EPA's interpretation of these terms and the final
definition are intended to closely align the scope and application of
section 401 regulations with the text of the statute.
---------------------------------------------------------------------------
\56\ In 1971, EPA Administrator Ruckelshaus provided a written
statement to the Chairman of the House Committee on Public Works
concerning H.R. 11896. H.R. Rep. No. 92-911, at 147-171 (1972). The
Administrator described 401(d) as it was drafted at the time as
requiring certifications to ``assure compliance with Sections 301
and 302 and `any other applicable water quality requirement in such
State.' '' Id. at 166. The Administrator noted that ``[t]he scope of
the catchall phrase is not defined in Section 401, and the question
arises as to whether certification by the State is to include
certification with respect to discharges from point sources to meet
the provisions of Sections 306 or 307.'' Id. The Administrator
stated that 401(d) could be ``more clearly expressed if the term
`applicable water quality requirement' was defined. . . .'' and then
offered an interpretation and a definition of the term. Id. The
Administrator's recommendation was not adopted in the enacted bill,
and this rulemaking is the first formal step the EPA has taken to
clarify the meaning of the terms in section 401(d).
---------------------------------------------------------------------------
An interpretation of section 401 that most closely aligns with the
text of the statute would limit ``water quality requirements'' to
sections 301, 302, 303, 306 and 307 of the CWA and State and Tribal
laws and regulations that are either counterparts to or that implement
these enumerated sections of the Act. The EPA considered adopting this
interpretation in the final rule, but recognizes that, in some cases,
it may be difficult to determine whether a State or Tribal statute or
regulation was adopted ``to implement'' sections 301, 302, 303, 306 and
307 of the CWA. In many cases, State or Tribal statutes may have been
enacted prior to the 1972 CWA amendments, but updated or modified over
the decades to implement or incorporate portions of the enumerated CWA
provisions.
To avoid placing a potentially burdensome factual inquiry on States
and Tribes, the final rule definition of ``water quality requirements''
is drafted more broadly to include those enumerated provisions of the
CWA and State and Tribal regulatory requirements that pertain
specifically to point source discharges into waters of the United
States. This is consistent with the plain language of the statute
because, with one exception, each of the enumerated CWA provisions in
section 401 describes discharge-related limitations. The only exception
is section 303, which addresses water quality standards, but these are
primarily used to establish numeric limits in point source discharge
permits. Further, and as described in section III.A of this notice,
section 401 applies only to actual or potential discharges into waters
of the United States. The final definition of ``water quality
requirements'' therefore closely aligns with the text of the statute,
while providing an objective test for whether a particular provision is
within the scope of section 401. The Agency anticipates that this
approach will increase clarity and efficiency in the certification
process. Under this final rule, a State or Tribal regulatory
requirement that applies to point source discharges into waters of the
United States is a ``water quality requirement'' and is therefore
within the scope of certification.
The phrase ``state or tribal regulatory requirements for point
source discharges into waters of the United States'' in the final
rule's definition includes those provisions of State or Tribal law that
are more stringent than federal law, as authorized in CWA section 510.
33 U.S.C. 1370. The legislative history supports the EPA's
interpretation in this final rule. See S. Rep. No. 92-414, at 69 (1971)
(``In addition, the provision makes clear that any water quality
requirements established under State law, more stringent than those
requirements established under this Act, also shall through
certification become conditions on any Federal license or permit.'').
It is important to note, however, that these more stringent provisions
may not alter the scope of certification as provided in this final
rule. For example, nonpoint source discharges and discharges to other
non-federal waters are not within the scope of certification and are
not included in the definition of ``water quality requirements.''
Accordingly, they are not factors to be considered
[[Page 42254]]
when making decisions on certification requests.
Some commenters agreed that the proposed definition limiting ``any
other appropriate requirement of state law'' to ``EPA-approved state or
tribal Clean Water Act regulatory program provisions'' is the correct
interpretation of the Act because section 401 cannot apply beyond the
authority of the CWA. These commenters agreed that the principle
ejusdem generis and the logic of Justice Thomas's dissent in PUD No. 1
show that the appropriate interpretation of ``any other appropriate
requirement of state law'' extends ``only to provisions that, like
other provisions in the statutory list, impose discharge-related
restrictions,'' which are the ``regulatory provisions of the CWA.''
Other commenters expressed confusion regarding the meaning and scope of
the phrase ``EPA-approved state or tribal Clean Water Act regulatory
program provisions'' in the proposed rule and asked for clarification
on which regulatory programs would be included in that term. Some
commenters stated that this lack of clarity made the scope of the
proposed rule ambiguous such that States and Tribes would not be able
to implement the regulations.
The EPA has made some enhancements to the final rule definition of
``water quality requirements'' to provide better clarity and regulatory
certainty. The final rule does not require these State and Tribal
provisions to be EPA-approved. In making this change, the Agency
considered that there may be State or Tribal regulatory provisions that
address point source discharges into waters of the United States that
only partially implement certain CWA programs or that were not
submitted to the EPA for approval. The EPA also considered, as noted by
some commenters, that States and Tribes may submit to the EPA CWA
regulatory program provisions, including water quality standards and
applications for ``treatment as States'' (TAS), and wait months or
sometimes years for the EPA to act on those submittals. The final rule
language addresses this concern by broadening the universe of State and
Tribal laws that may be considered ``water quality requirements''
compared to the proposal.
A few commenters expressed concern that the proposed rule failed to
recognize that most Tribes do not have EPA-approved water quality
regulations. These commenters asserted that in areas where the EPA is
the certifying authority, the Administrator would not be able to
consider water quality protective ordinances or water quality standards
adopted by Tribes, leaving no protection for most Tribal waters. The
EPA appreciates these comments, and under the final rule, State and
Tribal regulatory provisions for point source discharges into waters of
the United States are ``water quality requirements'' regardless of
whether they have been approved by the EPA. Therefore, if a Tribe has
adopted water quality standards under Tribal law that serve as a basis
for effluent limitations or other requirements for point source
discharges into waters of the United States, the certifying authority
must consider those provisions when evaluating a certification request.
Some commenters asserted that the proposed rule would limit the
ability of a Tribe to adopt water quality regulations or to obtain TAS
for section 401 certifications. Neither the proposal nor the final rule
affect in any way the ability of a Tribe to adopt CWA water quality
standards or obtain TAS. The EPA understands there may be unique
challenges with Tribal implementation of CWA statutory authorities, but
reiterates that pursuant to section 401(b), the EPA is available and
obligated to provide technical expertise on any matter related to
section 401. In addition, the EPA actively and routinely provides
financial and technical assistance to Tribes for the development of
aquatic resource protection programs. Such assistance includes Tribal
capacity building for new or enhanced regulatory programs, as well as
development of laboratory, field, and quantitative methods, tools, and
trainings for monitoring and assessing aquatic resources. With this
final rule, the Agency is reaffirming its responsibilities under
section 401 to serve as a resource and consultant to Tribes requesting
technical assistance.
Some commenters, citing the broad interpretation of ``any other
appropriate requirement of State law'' in EPA's Interim Handbook,
stated that the EPA has not provided an adequate explanation or
rationale for departing from its prior interpretation of the CWA. The
EPA disagrees with the suggestion that it has not provided sufficient
or adequate explanation for the interpretation presented in the
proposed rule. In any event, the final rule is based in part on the
plain language of section 401, which provides that the enumerated
sections of the CWA and ``any other appropriate requirement of State
law'' must be considered in a water quality certification. The CWA does
not define what is an ``appropriate requirement of State law,'' and the
EPA reasonably interprets this term to refer to a subset of ``water
quality requirements,'' a term that is also used throughout section
401. The final rule, like the proposal, is informed by the principle
ejusdem generis. Under this principle, where general words follow an
enumeration of two or more things, they apply only to things of the
same general kind or class specifically mentioned. See Wash. State
Dept. of Social and Health Services v. Keffeler, 537 U.S. 371, 383-85
(2003). Given the breadth of potential interpretations of ``water
quality requirements'' and ``other appropriate requirement of State
law'' described throughout this notice, the Agency concludes that the
most appropriate interpretation is one that remains loyal to the text
of the statute. Accordingly, the final definition of ``water quality
requirements'' includes sections 301, 302, 303, 306, and 307 of the CWA
and State or Tribal statutes and regulations governing point source
discharges into waters of the United States.
A few commenters stated that the EPA's reliance on the canon of
statutory interpretation ejusdem generis is unfounded because, if the
context of a statute dictates an alternative interpretation, ejusdem
generis should not apply, citing N. & W. Ry. v. Train Dispatchers, 499
U.S. 117 (1991). The EPA disagrees with these commenters who assert
that the context of section 401(d) dictates a different result. The use
of the word ``appropriate'' in section 401(d) indicates that Congress
intended to limit the phrase ``requirement of state law'' in some
meaningful manner. It is reasonable to conclude that Congress intended
that limitation to be informed by the enumerated provisions of the CWA
that appear in section 401, as well as other key statutory touchstones
like the terms ``discharge'' and ``navigable waters,'' i.e., ``waters
of the United States.'' See Harrison v. PPG Industries, Inc., 446 U.S.
578, 578-79 (1980) (rejecting application of ejusdem generis where--
unlike the word ``appropriate'' in section 401(d)--the relevant
statutory phrase ``any other final action'' did not contain limiting
language that rendered its meaning uncertain and in need of further
interpretation). The phrase ``any other appropriate requirement of
State law'' in section 401(d) is not unlimited or expansive, but rather
it contains limiting language (``appropriate'') that must not be read
out of the statute. In short, the canon of statutory interpretation of
ejusdem generis is a tool that the EPA reasonably and properly used to
inform the interpretation of the ambiguous statutory text in section
401.
Many commenters agreed with the analysis in the proposed rule
preamble
[[Page 42255]]
that section 401 focuses on protecting water quality and is not
intended to address other environmental impacts such as air emissions,
transportation effects, climate change, and other examples mentioned in
the preamble to the proposed rule. These commenters stated that the
proposed rule's definition of water quality requirements appropriately
ensures that the scope of certification addresses water quality
concerns within the scope of the CWA. A few commenters stated that the
legislative history for the CWA generally supports water quality as the
appropriate boundary for the scope of water quality certifications,
citing 116 Cong. Reg. 8,984 (Mar. 24, 1970), and S. Rep. No. 92-414
(1971). The EPA agrees with these commenters and concludes that the
final rule appropriately limits water quality certifications issued
under section 401 to water quality issues.
Some commenters maintained that the proposed rule's definition of
water quality requirements would allow a certifying authority only to
consider numeric water quality criteria. Some commenters requested that
the definition of water quality requirements be revised to explicitly
include aquatic use criteria and impacts such as streamflow and water
quantity. Some commenters expressed concern that the scope of water
quality requirements under the proposed rule would no longer allow
States and Tribes to consider water quality standards that go beyond
the scope of, or are more stringent than, the CWA. Neither the proposed
definition of ``water quality requirements'' nor the final rule would
limit States to evaluating only numeric water quality criteria in a
certification review. While numeric water quality criteria are a
central element of a water quality certification, the final definition
allows States and Tribes to evaluate narrative water quality standards
and other regulatory requirements that apply to point source discharges
into waters of the United States.
Some commenters requested that the final rule clarify that
requiring minimum in-stream flows is beyond the scope of water quality
requirements and that fish and wildlife impacts are not within the
proper scope of section 401, because those impacts are more
appropriately addressed under other federal statutes and regulations.
The EPA agrees that, in some cases, these elements may be beyond the
scope of section 401. However, neither the proposed rule nor the final
rule specify whether minimum flow conditions would be appropriate
certification conditions. Given the case-specific nature of such an
analysis, the final rule does not include categorical exclusions
requested by these commenters.
Some commenters stated that the proposed rule would violate the
broad savings clause in section 510, which applies to any pollution
control or abatement requirement. These commenters asserted that
nothing in section 510 excludes conditions imposed under section 401.
These commenters further asserted that numerous courts have held that
sections 401 and 510 evince Congress' clear intent not to preempt but
to ``supplement and amplify'' State authority. The EPA interprets
section 401 as providing an opportunity for States and Tribes to
evaluate and address water quality concerns during the federal license
or permit processes, which, in some cases, might otherwise preempt
State authority. There is nothing in the text of section 401(d) that
supports the idea that States have unbounded authority--as a result of
section 510 or otherwise--to impose an unlimited universe of conditions
on an applicant for a federal license or permit. Any such conditions
must be--as the statute specifies--based on certain enumerated
provisions of the CWA and on any other ``appropriate'' requirements of
State law. As the Agency charged with administering the CWA, EPA is
authorized to interpret ``appropriate'' in a way that balances the
scope and focus of section 401 and State prerogative under section 510.
If Congress intended for section 401 to reserve all State authorities
over pollution control and abatement, as it did under section 510,
Congress could have specifically referenced section 510 within section
401. Congress did not do so, and instead cited to other specific
provisions of the CWA and referenced other ``appropriate'' requirements
of State law.
In fact, the 1972 Senate Bill version of section 401(d) explicitly
referenced section 510 and provided that a certification could include
conditions necessary to assure that the applicant would comply with
``any more stringent water quality requirements under State law as
provided in section 510 of this Act . . .'' S. 2770, 92nd Cong. (1972).
This language was not included in the enacted bill, but the Senate Bill
version demonstrates that Congress considered including a reference to
section 510 within section 401, but did not do so. This is further
evidence that Congress did not intend section 401 to operate as a broad
savings clause for any pollution control or abatement requirement, as
some commenters assert.
These commenters also fail to account for the use of the word
``appropriate'' in section 401(d) as a meaningful limitation on what
may be considered as part of the scope of certification under section
401. For the reasons stated above, the Agency concludes that State and
Tribal regulatory requirements for point source discharges into waters
of the United States properly allow States to participate in the
section 401 certification process, consistent with the CWA.
As discussed throughout this section and as illustrated by public
comments, the terms ``water quality requirements'' and ``any other
appropriate requirement of state law'' lend themselves to a range of
potential interpretations. Informed by the public comments received,
the EPA considered a number of different interpretations prior to
finalizing the definition of the term ``water quality requirements.''
At one end of the spectrum, the Agency considered whether the text of
section 401(d) could mean that the only State or Tribal law-based
limitations allowed in a certification would be ``monitoring''
requirements ``necessary to assure'' that the applicant for a federal
license or permit will ``comply with'' ``any other appropriate
requirement of State law.'' While this may be a permissible
interpretation of section 401(d), and it may appear consistent with the
directive in CWA section 304(h) that the EPA establish test procedures
for the analysis of pollutants and factors that must be included in a
certification, the EPA is not adopting this interpretation in the final
rule. Such an interpretation would significantly limit the universe of
conditions related to ``appropriate requirements of State law'' to only
monitoring conditions and would be narrower than the interpretation set
forth in both the proposed and final rule. This interpretation also
would not provide any additional clarity as to the scope of State or
Tribal law that could be the basis for those monitoring conditions.
At the other end of the spectrum, the EPA considered whether
section 401(d) certification conditions could be based on any State or
Tribal law, regardless of whether it is related to water quality. This
interpretation reflects the current practice of some certifying
authorities. The Agency rejected this broad and open-ended
interpretation of section 401(d) as inconsistent with the structure and
purposes of section 401 as reflected in the text of the provision,
including Congress's inclusion of the limiting modifier ``appropriate''
in the phrase ``any other appropriate requirement of State law.'' By
including the term ``appropriate,'' Congress placed at least some
limits on the phrase ``any other
[[Page 42256]]
. . . requirement of State law.'' The EPA concludes that such an open-
ended interpretation would be far more broad than the proposed rule and
the final rule, would exceed the scope of authority provided under the
CWA, and would further reduce regulatory certainty.
The EPA also considered another broader interpretation that would
authorize certification conditions based on any State or Tribal water
quality-related provision. Such an interpretation could bring in
conditions that purport to address non-federal waters or that regulate
nonpoint source discharges. Some commenters stated that section 401
provided a broad grant of authority to States and Tribes to protect
water quality without limitations. These commenters asserted that to
interpret the statute otherwise would read ``any other appropriate
requirement of state law'' out of the statute. These commenters also
cited other cases that suggest that a broad scope of State laws may be
considered for a water quality certification. The EPA did not adopt
this broad interpretation in the final rule because the EPA concluded
that it is not required by the statute and is not the better reading of
section 401(d). Although the interpretation has some superficial
appeal, it errs by equating ``appropriate'' with ``any'' and thereby
fails to provide meaning to the word ``appropriate.'' Under the
familiar interpretative canon, no portion of a statute may be construed
as mere surplusage. Such an interpretation would also be inconsistent
with the regulatory framework of the CWA, which addresses point source
discharges from waters of the United States.
Finally, the EPA considered an interpretation that would limit
water quality requirements to those provisions of State or Tribal law
that restore or maintain the physical, chemical, and biological
integrity of the nation's waters, consistent with CWA section 101(a).
These same principles could also be applied to only waters of the
United States, or narrowed to only include water quality requirements
that restore or maintain the chemical integrity of waters. Although
this may be a permissible interpretation of the statute, the EPA
concluded that it may not provide sufficient specificity or regulatory
certainty.
The EPA considered all of these public comments and the varying
interpretations described above and is finalizing a definition of
``water quality requirements'' that strikes a balance among various
competing considerations while remaining loyal to the text of the CWA.
The final rule is a reasonable interpretation of the ambiguous
statutory text, is within the clear scope of the CWA, and will provide
additional clarity and regulatory certainty for certifying authorities,
project proponents, and federal licensing and permitting agencies.
c. Scope of Certification Conditions and Denials
The scope of certification described above is the foundation of the
final rule and it informs all other provisions of the final rule,
including all actions taken by a certifying authority. Under this final
rule, certification conditions and denials must be within the scope of
certification as provided in section 121.3 of the final rule. In other
words, a condition must be necessary to assure that the discharge from
a proposed federally licensed or permitted project will comply with
water quality requirements, as defined at section 121.1(n) of this
final rule, and a denial must be due to the inability of a certifying
authority to determine that the discharge from the proposed project
will comply with water quality requirements.
To promote transparency and to help assure that certifying
authorities understand and consider the appropriate scope of
information when developing a certification condition or issuing a
denial, the final rule also requires a certifying authority to include
specific information to support each condition or denial. These
requirements help to build a comprehensive administrative record and to
document the certifying authorities' basis for the condition or denial.
As discussed in greater detail in section III.G.2.b of this notice,
this final rule requires that the following information be included in
a certification to support each condition:
1. A statement explaining why the condition is necessary to assure
that the discharge from the proposed project will comply with water
quality requirements; and
2. A citation to federal, state, or tribal law that authorizes the
condition.
Similarly, as discussed in greater detail in section III.G.2.c of
this notice, the final rule requires that the following information be
included in a denial of certification:
1. The specific water quality requirements with which the
discharge will not comply;
2. A statement explaining why the discharge will not comply with
the identified water quality requirements; and
3. If the denial is due to insufficient information, the denial
must describe the specific water quality data or information, if
any, that would be needed to assure that the discharge from the
proposed project will comply with water quality requirements.
These requirements are intended to increase transparency and ensure
that any limitation or requirement added to a certification, and any
denial, is within the scope of certification.
As discussed in section II.G.1.a of this notice, the EPA is aware
that some certifying authorities may have previously interpreted the
scope of section 401 to include non-water quality-related
considerations. For example, the EPA understands some certifying
authorities have included conditions in a certification that have
nothing to do with effluent limitations, monitoring requirements, water
quality, or even the CWA. Such requirements were perhaps based on other
non-water quality-related federal statutory or regulatory programs
(NEPA, ESA), or on concerns about environmental media other than water.
Or such requirements might have been related to State, Tribal, or local
laws, policies, or guidance that are unrelated to the regulation of
point source discharges to waters of the United States. Similarly, the
EPA is aware of circumstances in which some States have denied
certifications on grounds that are unrelated to water quality
requirements and that are beyond the scope of CWA section 401.\57\ The
EPA does not believe that such actions are authorized by section 401,
because they go beyond assuring that ``discharges'' from federally
licensed or permitted activities comply with ``water quality
requirements.'' See also section II.G.1 of this notice for further
discussion of the terms ``discharge'' and ``water quality
requirements.''
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\57\ See Letter from Thomas Berkman, Deputy Commissioner and
General Counsel, New York State Department of Environmental
Conservation, to Georgia Carter, Vice President and General Counsel,
Millennium Pipeline Company, and John Zimmer, Pipeline/LNG Market
Director, TRC Environmental Corp. (Aug. 30, 2017) (denying section
401 certification because ``FERC failed to consider or quantify the
effects of downstream [greenhouse gas emissions] in its
environmental review of the Project'').
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Some commenters provided comment regarding the appropriate scope of
denials. These commenters asserted that the proposed scope of review
would limit a certifying authority's ability to deny certification. A
few commenters asserted that states should be able to deny
certification if any state requirements would not be met. Other
commenters argued that the scope of denial should be limited to just
those CWA provisions enumerated in section 401(a). As discussed in
section III.D of this notice, the final rule provides a
[[Page 42257]]
certifying authority the ability to deny certification if it is unable
to certify that the proposed discharge will comply with ``water quality
requirements'' as defined in this rule. The Agency disagrees with
commenters who asserted that a certifying authority should be able to
deny certification if any State or Tribal requirements would not be
met. As discussed above in section III.E.2.b of this notice, extending
the scope of review to any State or Tribal law would be inconsistent
with Congress's inclusion of the limiting modifier ``appropriate'' in
the phrase ``any other appropriate requirement of State law,'' and the
Agency is not finalizing the proposed alternative interpretation that
would limit the scope of denials to the CWA provisions enumerated in
section 401(a). The Agency's interpretation of the scope of
certification, including the scope of denials, strikes a balance among
competing considerations while remaining loyal to the text of the CWA.
Many commenters specifically addressed the appropriate scope of
conditions. Some commenters urged the EPA not to use a small number of
examples of conditions that did not directly relate to protecting water
quality to justify narrowing the scope of certification conditions.
These commenters provided additional examples of conditions that
certifying authorities have included in certifications, such as
building and maintaining fish passages, compensatory mitigation,
temporal restrictions on activities to mitigate hazards or protect
sensitive species, pre-construction monitoring and assessment of
resources, habitat restoration, tree planting along waterways, spill
management plans, stormwater management plans, and facilitating public
access. The EPA appreciates commenters' providing additional examples
of certification conditions. The EPA agrees that in many instances,
each of these examples may be beyond the scope of certification as
articulated in this final rule. However, there may be unique project-
specific facts or circumstances, including the nature of the discharge
and applicable water quality standards and related designated uses,
that must inform whether a particular condition is within the scope of
certification, as defined in this final rule.
A few commenters stated that narrowing States' and Tribes' ability
to condition licenses and permits may lead to more certification
denials. The EPA disagrees with these commenters, as the scope of
certification in the final rule informs the scope of appropriate
conditions and the appropriate bases for denial. In other words, if
this final rule would preclude a State from requiring tree planting as
a certification condition, the final rule would also preclude a State
from denying certification based on a lack of trees planted in or
around the project area.
Some commenters stated that limiting the proposed definition of
``water quality requirements'' to exclude State laws that are not EPA-
approved would preclude conditions based on State-required riparian
buffers, erosion and sedimentation controls, chloride monitoring,
mitigation, fish and wildlife protection, drinking water protections,
fish ladders, and adaptive management measures. As discussed above, the
Agency is finalizing a definition of ``water quality requirements''
that removes the condition that State or Tribal law requirements must
be ``EPA-approved.'' Under the final rule, the definition of ``water
quality requirements'' includes ``state or tribal regulatory
requirements for point source discharges into a water of the United
States,'' and includes State or Tribal provisions that are more
stringent than federal requirements.
One commenter suggested that instead of limiting section 401
certification conditions to water quality-related conditions, the EPA
should consider having each State define the reserved authorities under
section 401 that it intends to apply in a certification, as well as the
types of discharges associated with those State authorities. The EPA
disagrees with this commenter's suggestion, as it would result in a
greater patchwork of State regulations, with potentially every State
establishing a different scope of certification and a different range
of discharges that may be subject to certification in each State. One
principal goal of this rulemaking is to provide greater clarity,
regulatory certainty, and predictability for the water quality
certification process. Finalizing a rule like the one suggested by this
commenter would undercut those outcomes significantly.
The EPA recognizes that, historically, many State and Tribal
certification actions have reflected an appropriately limited
interpretation of the purpose and scope of section 401. However, as
discussed above, the Agency is also aware that some certifications have
included conditions that may be unrelated to water quality, including
many of the types noted above, such as requirements for biking and
hiking trails to be constructed, one-time and recurring payments to
State agencies for improvements or enhancements that are unrelated to
the proposed federally licensed or permitted project, and public access
for fishing and other activities along waters of the United States.
Using the certification process to yield facility improvements or
payments from project proponents that are unrelated to water quality
impacts from the proposed federally licensed or permitted project is
inconsistent with the authority provided by Congress.
Some commenters stated that the EPA should clarify in the final
rule that certification conditions must be directly related to impacts
to water quality requirements from the project proponent's activity,
and not water quality concerns caused by other entities. One commenter
stated that the guiding principle for courts tasked with determining
the propriety of section 401 certification conditions has been whether
the condition was designed to directly address water quality effects
caused by the licensee's or permittee's activity, and courts have
emphasized that state agencies evaluating requests for water quality
certifications may not consider the effects of activities other than
those being licensed. This commenter recommended that the EPA revise
section 121.5(d) of the proposed rule to state, ``Any condition must
directly address a water quality effect caused by the particular
activity for which the applicant is seeking a license or permit.'' The
EPA agrees with these commenters that certification conditions must be
directly related to water quality impacts from the proposed project.
However, the EPA has concluded that the requirements in section
121.7(d) of the final rule accomplish the commenter's request, and the
EPA did not modify the final rule to include what EPA believes would be
a redundant provision. The EPA is also aware of certification
conditions that purport to require project proponents to address
pollutants that are not discharged from the construction or operation
of a federally licensed or permitted project. As discussed in this
section, certification conditions must be necessary to assure that the
discharge from a proposed federally licensed or permitted project will
comply with water quality requirements, because this is the extent of
authority provided in section 401.
The Agency proposed a definition for ``condition'' in an attempt to
clarify that conditions included in a water quality certification must
be within the scope of certification, as defined in this final rule.
Some commenters supported the proposed definition of condition and the
structure of the proposed rule. Other commenters stated that the EPA
[[Page 42258]]
unnecessarily defined ``condition'' to allow for federal review of
water quality certifications. One commenter stated that the argument
that Congress intended to allow the EPA to define the term
``condition'' under section 401 misconstrues the structure of section
401(d). This commenter stated that under the plain language of section
401(d), States impose ``limitations'' and ``monitoring requirements''
in a certification, and the certification itself then becomes ``a
condition'' on the federal permit. This commenter further stated that
there is no ambiguity in the statute, which requires that the entire
certification is incorporated into the federal license or permit.
The Agency disagrees that it misinterpreted section 401(d) of the
statute and further disagrees with the suggestion that there is no
ambiguity in section 401(d).\58\ The EPA acknowledges that
interpretations other than what were presented in the proposed rule
could be permissible under the statute, if adequately supported by a
reasoned explanation. The EPA considered the specific interpretation
advanced by this commenter and is not adopting this interpretation in
the final rule. As a practical matter, courts that have considered
challenges to certification conditions have routinely focused their
review on those specific conditions, rather than the entire
certification itself. See PUD No. 1, 511 U.S. at 713-14; Deschutes
River All. v. Portland Gen. Elec. Co., 331 F. Supp. 3d 1187, 1192,
1199-1209 (D. Or. 2018); Airport Communities Coal. v. Graves, 280 F.
Supp. 2d 1207, 1214-17 (W.D. Wash. 2003). The EPA's final rule is
consistent with these courts' interpretations. For these reasons and to
promote clarity and regulatory certainty, the EPA is declining to adopt
this particular interpretation. However, based on other enhancements in
the final rule, the Agency has decided not to finalize a definition for
``condition.'' Together, the ``scope of certification'' and ``water
quality requirements,'' as well as the rule's language specifying the
elements required in a certification with conditions, appropriately
limit what can be properly considered a condition under the final rule,
such that defining the term is not necessary. Moreover, section
121.7(a) of the final rule specifically provides that any action to
grant a certification with conditions must be within the scope of
certification. The scope of certification extends to the scope of
conditions that are appropriate for inclusion in a certification--
specifically, that these conditions must be necessary to assure that
the discharge from a federally licensed or permitted activity will
comply with water quality requirements, as defined at section 121.1(n)
of this final rule.
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\58\ The legislative history of the 1972 amendments does not
provide a clear answer on this issue. See H.R. Rep. No. 91-911, at
124 (1972) (``the effluent limitations and other limitations and any
monitoring requirements will become a condition on any Federal
license or permit.'' But see S. Rep. No. 92-414, at 69 (1971)
(``such a certification becomes an enforceable condition on the
Federal license or permit.'')
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F. Timeframe for Certification Analysis and Decision
1. What is the Agency finalizing?
In this final rule, the EPA is reaffirming that CWA section 401
requires certifying authorities to act on a request for certification
within a reasonable period of time, which shall not exceed one year. By
establishing an absolute outer bound of one year following receipt of a
certification request, Congress signaled that certifying authorities
have the expertise and ability to evaluate potential water quality
impacts from even the most complex proposals within a reasonable period
of time after receipt of a request, and in all cases within one year.
Under the final rule, federal agencies determine the reasonable period
of time for a certifying authority to act on a certification request,
and the final rule establishes procedures for setting, communicating,
and (where appropriate) extending the reasonable period of time. The
EPA is also reaffirming that section 401 does not include a tolling
provision, and the period of time to act on a certification request
does not pause or stop once the certification request has been
received. The final rule provides additional clarity on what is a
``reasonable period'' and how the period of time is established.
2. Summary of Final Rule Rationale and Public Comment
a. Reasonable Period of Time
The EPA is finalizing the proposed rule's provision that federal
licensing and permitting agencies determine the reasonable period of
time, either categorically or on a case-by-case basis. Some federal
licensing and permitting agencies have appropriately exercised their
authority to set the reasonable period of time through promulgated
regulations, including EPA, FERC and the Corps. EPA's regulations at 40
CFR 124.53(c)(3) provide that ``the State will be deemed to have waived
its right to certify unless that right is exercised within a specified
reasonable time not to exceed 60 days from the date the draft permit is
mailed to the certifying State agency. . . .'' FERC's regulations at 18
CFR 5.23(b)(2) provide that ``[a] certifying agency is deemed to have
waived the certification requirements of section 401(a)(1) of the Clean
Water Act if the certifying agency has not denied or granted
certification by one year after the date the certifying agency received
a written request for certification.'' The Corps' regulations at 33 CFR
325.2(b)(1)(ii) state that ``[a] waiver may be explicit, or will be
deemed to occur if the certifying agency fails or refuses to act on a
request for certification within sixty days after receipt of such a
request unless the district engineer determines a shorter or longer
period is reasonable for the state to act.'' The Executive Order
directed all federal agencies with licenses or permits that may trigger
section 401 certification to update their existing regulations to
promote consistency across the federal government upon completion of
this rulemaking to modernize the EPA's certification regulations.
Public commenters provided a variety of perspectives about which
entity should set the reasonable period of time. Some commenters agreed
with the proposed rule that federal agencies are the appropriate entity
to determine the reasonable period of time, subject to the statutory
one-year limit. One commenter said the federal agencies should set the
time period to maximize efficiency, increase timeliness of decision-
making, and reduce uncertainty. Some commenters asserted that the
reasonable period of time should be set by the certifying authority,
because they believe that federal agencies lack expertise on State
environmental and administrative requirements and therefore may set a
reasonable period of time that is incompatible with those requirements
or too short for complex projects. Other commenters asserted that
federal agencies do not have authority under section 401 to determine
the reasonable period of time. One commenter asserted that while
federal agencies have the authority to adopt regulations setting a
``reasonable time'' for decisions, citing Millennium Pipeline Co. v.
Seggos, 860 F. 3d 696, 700 (D.C. Cir. 2017), the CWA did not give
federal agencies unfettered discretion to set deadlines that prevent
States and Tribes from exercising their substantive authority under
section 401, citing City of Tacoma v. FERC, 460 F.3d 53, 67 (D.C. Cir.
2006). One commenter noted that it is a conflict of interest for the
federal agency to determine the
[[Page 42259]]
``reasonable period of time'' where that federal agency is both the
project proponent and the agency issuing the license or permit. Other
commenters believed that the EPA should determine the reasonable period
of time in coordination with the certifying authority. Finally, some
commenters stated that a one-year reasonable period of time should be
provided without any additional federal agency discretion, which they
asserted would increase regulatory certainty and ensure sufficient time
to meet Tribal consultation obligations.
The EPA has considered these comments and concluded that it is
reasonable and appropriate for federal agencies to set the reasonable
period of time. The Agency disagrees that certifying authorities should
set the reasonable period of time and disagrees that the EPA should set
the reasonable period of time for all certification requests. The
Agency also disagrees that certifying authorities should always have an
entire year to act on a certification request, as a year may not be
``reasonable'' in all cases, and section 401 does not guarantee one
year but rather states the action shall be taken within a reasonable
period of time which ``shall not exceed one year.'' 33 U.S.C.
1341(a)(1). The statutory language of section 401 provides that a
certification shall be waived if the certifying authority fails or
refuses to act within the reasonable period of time, but the statute is
silent on who should set the reasonable period of time. Id. The Agency
is authorized to reasonably interpret the statute (see Chevron, 467
U.S. at 843-44) and concludes that federal licensing and permitting
agencies should continue to fill this role as they have done for the
past several decades. This interpretation is consistent with judicial
and administrative precedent \59\ and with federal regulations that
were promulgated decades ago through public notice and comment
rulemaking (see, e.g., 33 CFR 325.1(b)(ii) and 18 CFR 5.23(b)(1)). From
a practical standpoint, federal licensing and permitting agencies have
decades of experience in processing applications in accordance with
their license and permit programs, and it is reasonable for the EPA to
conclude that federal agencies would have the necessary knowledge and
expertise to establish a reasonable period of time that is appropriate
considering the applicable federal procedures.
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\59\ Hoopa Valley Tribe v. FERC, 913 F.3d 1099, 1104 (D.C. Cir.
2019) (``Thus, while a full year is the absolute maximum, it does
not preclude a finding of waiver prior to the passage of a full
year. Indeed, the [EPA]--the agency charged with administering the
CWA--generally finds a state's waiver after only six months. See 40
CFR 121.16.''); Constitution Pipeline Company, LLC, 164 FERC P 61029
(F.E.R.C.), 2018 WL 3498274 (2018) (``[T]o the extent that Congress
left it to federal licensing and permitting agencies, here the
Commission, to determine the reasonable period of time for action by
a state certifying agency, bounded on the outside at one year, we
have concluded that a period up to one year is reasonable.''). See
the Economic Analysis for further discussion on the litigation
posture of the Constitution Pipeline Company, LLC case.
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The Agency disagrees with the commenter's suggestion that there is
a conflict of interest when the federal agency setting the reasonable
period of time is also the project proponent. This final rule requires
federal agencies to comply with the same requirements, including
requirements concerning the reasonable period of time, as other project
proponents when they require a federal permit that triggers the
certification process.
In setting the reasonable period of time for a certification--
either on a project-by-project basis or categorically--this final rule
requires federal agencies to consider:
1. The complexity of the proposed project;
2. The nature of any potential discharge; and
3. The potential need for additional study or evaluation of water
quality effects from the discharge.
With one exception discussed further below, the EPA is finalizing
these factors as proposed. These factors maintain flexibility for
federal agencies to consider project-specific or categorical
information that should be readily available. If certifying authorities
believe more time is necessary than what is established by the federal
agency, they may request an extension to the reasonable period of time
as described below.
A federal agency may decide that it is more efficient to establish
the reasonable period of time based on common attributes of a category
of licenses, permits, or potential discharges--rather than on a case-
by-case basis. This type of categorical approach may be set out through
rulemaking or other procedures in accordance with law. Establishing
categorical reasonable periods of time may be more efficient, conserve
resources, and increase regulatory transparency.
Some commenters supported the proposed three factors for
determining the reasonable period of time. Other commenters recommended
that a variety of additional factors be added, including but not
limited to State law requirements for public participation and
procedure; State agency workload and resource constraints; substantive
State law requirements for environmental review, type of permit, or
timing of season-dependent field studies; time to review a
certification request and any subsequent supplemental information; time
for all stakeholders to provide input on a certification request; time
for project proponents to provide additional information; other federal
program requirements; and the extent of potential impact from a
discharge. Several commenters noted that under the process set forth in
the proposed rule, the federal agency could be required to set the
reasonable period of time based on the three factors, but without
receiving the actual certification request.
After considering these public comments, the EPA is finalizing
three factors that federal agencies must consider when setting the
reasonable period of time. In response to comments, the second factor
has been modified to require the federal agency to consider the nature
of any potential discharge. This modification clarifies that, in
establishing the reasonable period of time, federal agencies should
consider not only the potential for a discharge, but also the nature of
any potential discharge, including (as appropriate) the potential
volume, extent, or type of discharge associated with a particular
project or particular category of license or permit. Consistent with
the proposal, these factors may be used to establish a reasonable
period of time on a project-by-project basis or categorically.
Many of the factors that commenters recommended would be subsumed
by one of the factors that the EPA is finalizing, such as project
complexity. Many of the concerns that commenters raised about the
proposal--for example, that the reasonable period of time does not
account for State public notice procedures--would also be a concern
under the status quo 1971 certification regulations. However, over the
past few decades, certifying authorities and federal agencies have
formulated joint applications, memoranda of agreement, and other
mechanisms to ensure that public participation requirements are met
within the reasonable period of time. The EPA expects certifying
authorities and federal agencies to continue these cooperative
approaches to facilitate implementation of the final rule.
The EPA received a variety of comments regarding a potential
default reasonable period of time of six months, including conflicting
views on whether
[[Page 42260]]
six months is too long or too short, and whether a default reasonable
period of time would increase or decrease clarity and regulatory
certainty. Some commenters asserted that a default reasonable period of
time of six months would be too short in cases in which certifying
authorities have not received all necessary information from project
proponents, or for project proponents requiring FERC licenses. Another
commenter stated that without a default period of time, the rule would
introduce regulatory uncertainty and result in inefficiencies and
delays. The Agency has considered these comments and is finalizing the
rule as proposed with no default or minimum reasonable period of time.
The final rule thus provides federal licensing and permitting agencies
the maximum flexibility to develop appropriate procedures for their
permitting programs as they update their certification regulations in
accordance with the Executive Order.
The final rule also clarifies the process by which federal agencies
and certifying authorities communicate regarding the reasonable period
of time. A clear understanding of the reasonable period of time will
prevent certifying authorities from inadvertently waiving their
opportunity to certify a request and will provide regulatory certainty
to the project proponent. As explained in section III.C of this notice,
the Agency has modified the proposed rule to respond to commenter
concerns and is finalizing a requirement that the project proponent
provide the certification request to the federal agency concurrently
when it submits the certification request to the certifying authority.
Under the final rule and consistent with the proposal, within 15 days
of receiving the certification request from the project proponent, the
federal agency must provide, in writing, the following information to
the certifying authority: The date of receipt, the applicable
reasonable period of time to act on the certification request, and the
date upon which waiver will occur if the certifying authority fails or
refuses to act. This provision is substantively identical to the one
proposed, with minor modifications to increase clarity.
Public commenters expressed implementation concerns regarding the
process for federal agencies to communicate the reasonable period of
time to the certifying authority. One commenter believed that the 15-
day turnaround time may not be practical, and a few commenters
suggested that there is no accountability for federal agencies that
fail to provide the required information within 15 days. A few
commenters recommended adding a procedure for adjudicating
circumstances where the certifying authority disagrees with the
reasonable period of time set by the federal agency. One commenter
noted there is no requirement that the federal agency explain the
chosen time period, making it more difficult to challenge the federal
agency's decision or to petition for more time. One commenter said that
federal agencies should be required to communicate the reasonable
period of time even when agencies have promulgated time periods
categorically by project type in their section 401 implementing
regulations.
The EPA has considered these comments and is finalizing as proposed
the process for federal agencies to communicate the reasonable period
of time. The EPA understands that this process may create additional
administrative burdens on federal agencies, given the number of section
401 certification requests that are submitted each year. However, the
Agency expects that the benefit of clarity and transparency that this
additional process will provide for all parties involved in a section
401 certification process will outweigh any additional burden on
federal agencies. The EPA also expects the federal agencies will
quickly routinize this process by developing and using forms,
electronic notifications, or other tools to minimize the potential
administrative burden associated with providing written notice of the
reasonable period of time. The EPA does not anticipate that federal
agencies will fail to set, or fail to notify certifying authorities of,
the reasonable period of time under this final rule. The EPA expects
federal agencies to communicate and act in good faith and in accordance
with this final rule regarding the establishment of a reasonable period
of time. Consistent with the proposal, the final rule authorizes
federal agencies to establish categorical reasonable periods of time
for types of licenses or permits, thereby increasing efficiency and
transparency. To provide additional certainty to certifying authorities
and project proponents, the EPA recommends that federal agencies
promulgate in their updated certification regulations a minimum
reasonable period of time that may be extended on a case-by-case basis,
so long as it does not exceed one year from receipt of the
certification request. To the extent that federal agencies are
considering establishing additional procedures for communicating the
reasonable period of time to certifying authorities (e.g., directing
all project proponents to a public website to view categorically-
established reasonable periods of time in federal agency regulations),
the EPA supports the development of such procedures so long as they
comply with the requirements in this rule. The EPA disagrees with the
suggestion that a separate appeal process is necessary for certifying
authorities to adjudicate the federal agency's reasonable period of
time, as this final rule provides a process for the certifying
authority to request an extension to the established reasonable period
of time and describes clear factors for federal agencies to consider
when setting the reasonable period of time in the first instance.
The EPA is clarifying that section 401 does not prohibit a federal
agency from extending an established reasonable period of time,
provided that the extended time period is reasonable and does not
exceed one year from receipt. Some commenters stated that it would
increase regulatory uncertainty for project proponents if the
reasonable period of time could be modified. However, most commenters
on this issue agreed that the rule should allow the flexibility to
modify timeframes, and many of these commenters agreed that the rule
should mirror the statute and maintain the maximum timeframe of one
year. A few commenters suggested that the Agency clarify the process
for modifying the time period, for instance by requiring specific
information to be included in an extension request, or by providing
federal agencies with a deadline to respond to extension requests.
Another commenter said the rule should provide a dispute resolution
process in the event the federal agency denies the State's request for
an extension. A few commenters stated that federal agencies should be
prohibited from shortening the reasonable period of time, and other
commenters asserted that federal agencies, in the spirit of cooperative
federalism, should consult with certifying authorities about when
shorter timelines may be appropriate.
The EPA does not expect reasonable periods of time to be extended
frequently, but the final rule is intended to provide federal agencies
with additional flexibility to account for unique circumstances that
may reasonably require a longer period of time than was originally
established. For such cases, the EPA is finalizing as proposed the
process by which the extended time period should be communicated in
writing to the certifying authority and the project proponent to ensure
that all parties are aware of the change. This provision is
substantively identical to the proposed provision, with minor
modifications to
[[Page 42261]]
increase clarity. The EPA finds it unnecessary to include additional
timelines and procedures in the regulatory text because, as many
commenters on the proposed rule pointed out, many certifying
authorities and federal agencies already have established procedures in
place through cooperative agreements or memoranda of agreement. The
Agency intends to maintain flexibility in the final rule for federal
agencies and certifying authorities to coordinate in this manner and to
routinize these processes to increase efficiencies. Under the final
rule, the reasonable period of time could be extended, as there may be
project-specific cases when this is appropriate, so long as the period
of time remains ``reasonable.'' Consistent with the proposal, the final
rule does not authorize a reasonable period of time to be shortened
once it is established. The Agency has made edits in final rule section
121.6 to clarify that the reasonable period of time can be extended,
but not shortened, once it is established. This change provides
flexibility in circumstances where unique or complex issues may arise,
but maintains certainty for the certifying authority that the
reasonable period of time, once established, cannot be made shorter.
The EPA is reaffirming in this final rule that the federal agency
also determines whether waiver has occurred. Some commenters asserted
that federal agencies do not have authority to determine that waiver
has occurred. The EPA has considered these comments and disagrees with
them. Relevant court decisions and the EPA's 1971 certification
regulations recognized the role of the federal agency to determine
whether a waiver has occurred. See Millennium Pipeline Company, L.L.C.,
860 F.3d at 700-01 (acknowledging that a project proponent can ask the
federal agency to determine whether a waiver has occurred). Consistent
with the proposal, this final rule clarifies the procedures for a
federal agency to notify a certifying authority and project proponent
that a waiver has occurred. As discussed in section III.G.2.d of this
notice below and pursuant to section 121.9 of the final rule, if the
certifying authority fails or refuses to act before the date specified
by the federal agency, the federal agency is required to communicate in
writing to the certifying authority and the project proponent that
waiver has occurred.
b. Tolling
Section 401 does not include a tolling provision. Consistent with
the proposal, the EPA concludes in this final rule that the period of
time to act on a certification request does not pause or stop for any
reason once the certification request has been received. One recent
court decision held that withdrawing and resubmitting the same
certification request for the purpose of circumventing the one-year
statutory deadline does not restart the reasonable period of time.
Hoopa Valley Tribe v. FERC, 913 F.3d 1099 (D.C. Cir. 2019) (Hoopa
Valley). The EPA agrees with the Hoopa Valley court that ``Section
401's text is clear'' that one year is the absolute maximum time
permitted for a certification, and that the statute ``does not preclude
a finding of waiver prior to the passage of a full year.'' Id. at 1103-
04. The court of appeals noted that ``[b]y shelving water quality
certifications, the states usurp FERC's control over whether and when a
federal license will issue. Thus, if allowed, the withdrawal-and-
resubmittal scheme could be used to indefinitely delay federal
licensing proceedings and undermine FERC's jurisdiction to regulate
such matters.'' Id. at 1104. The court further observed that the
legislative history supports its interpretation of the statute's plain
language, because ``Congress intended Section 401 to curb a state's
`dalliance or unreasonable delay.''' Id. at 1104-05 (emphasis in
original).
The Hoopa Valley case raised another important issue: Perpetual
delay of relicensing efforts (in that case for more than a decade)
delays the implementation and enforcement of water quality requirements
that have been updated and made more stringent in the years or decades
since the last relicensing process. See id. at 1101.\60\ This concern
was also raised in stakeholder recommendations received during pre-
proposal outreach. One stakeholder specifically cited the delays in the
Hoopa Valley case as a ``concrete example of how the Sec. 401
certification process was being manipulated by a state certification
agency to delay implementation of effective water quality controls and
enhancement measures'' and that ``allowing the Sec. 401 certification
process to be used to achieve further delays in the re-licensing
process is in turn an abuse of the certification process.'' Letter from
National Tribal Water Council to David P. Ross, Assistant Administrator
of the Office of Water, EPA (Mar. 1, 2019).
---------------------------------------------------------------------------
\60\ This is a concern shared by the EPA. The Agency has taken
steps to promote its own compliance with CWA deadlines, including
acting on State and Tribal water quality standard submittals,
because prior delays have created a significant backlog of state
submittals awaiting an Agency action. Memorandum from David P. Ross,
Assistant Administrator of the Office of Water, to Regional
Administrators (June 3, 2019). These delays and backlogs prevent
States and Tribes from timely implementing and enforcing updated
programs and standards that could otherwise be improving water
quality.
---------------------------------------------------------------------------
Given the Hoopa Valley court's plain language analysis of the
statute and the potential water quality impacts from allowing
certification decisions to be delayed, and the Agency's agreement with
that analysis, section 121.6(e) of the final rule provides:
The certifying authority is not authorized to request the
project proponent to withdraw a certification request and is not
authorized to take any action to extend the reasonable period of
time other than specified in section 121.6(d).
This clear statement reflects the plain language of section 401
and, as described above, is supported by legislative history. The
Agency expects this clarification to reduce delays and to help ensure
that certification requests are processed within the reasonable period
of time established by the federal agency, and at most, within one year
from receipt of the request.
Some commenters agreed that section 401 establishes an outer bound
of one year for the reasonable period of time. However, other
commenters argued that the rule should allow flexibility on the
timeline beyond one year. Many of these commenters argued States should
not be limited to one year if they have received inadequate information
and if projects are complex. One commenter asserted that section 401
allows for a State to ``act on'' a request within one year without
reaching a final decision in that one year, and the commenter asserted
that this interpretation provides a legal basis to allow extensions
exceeding one year.
Some commenters supported the proposed provision to the effect that
the certifying authority is not authorized to request the project
proponent to withdraw a request or take other action to modify or
restart the time period. Most of these commenters stated that the
proposed rule makes clear the allowable time may not exceed the maximum
of one year, and some of these commenters agreed that no tolling should
be allowed. Some of these commenters cited the Hoopa Valley case, and
one commenter cited the CWA legislative history. However, some
commenters disagreed with the suggestion that certifying authorities
should be prohibited from coordinating with project proponents to
modify or restart the reasonable period of time, as they asserted this
would be contrary to well-established practice. Some commenters stated
that a reasonable period of time longer than one year may
[[Page 42262]]
be warranted for complete information to be submitted and for
accommodating adequate State review and certification of projects. Most
of these commenters asserted that withdrawal and resubmittal to toll
the timeline is the best way to manage unforeseen issues or information
gaps. A few of these commenters stated that the words ``for the purpose
of'' in proposed rule section 121.4(f) (``[t]he certifying authority is
not authorized to request the project proponent to withdraw a
certification request or to take any other action for the purpose of
modifying or restarting the established reasonable period of time''
(emphasis added)) creates a subjective element depending on the
certifying authority's intent, and would create ambiguity in the rule
if finalized as proposed.
The Agency understands that in cases where the certifying authority
and project proponent are working collaboratively and in good faith, it
may be desirable to allow the certification process to extend beyond
the reasonable period of time and beyond the one-year statutory
deadline. However, the final rule reflects the statutory language that
the reasonable period of time may not exceed one year, 33 U.S.C.
1341(a)(1), and the Hoopa Valley holding that certifying authorities
and project proponents lack discretion under the CWA to engage in a
coordinated effort to extend the reasonable period of time.
Additionally, the Agency disagrees with the commenter's assertion that
the term ``act on'' provides a legal basis to extend the reasonable
period of time beyond one year. As discussed in section III.D of this
notice, a certifying authority may take one of four actions on a
certification request: Grant certification, grant certification with
conditions, deny certification, or expressly waive certification. If a
certifying authority fails or refuses to take one of these actions
within the reasonable period of time, the CWA provides that the
certifying authority will be deemed to have waived the certification
requirement. 33 U.S.C. 1341(a)(1). The Agency agrees with public
commenters that it would increase clarity to remove the words ``for the
purpose of'' in proposed rule section 121.4(f), and the final rule has
been modified accordingly. The Agency has also clarified in final rule
section 121.6(e) that the certifying authority may take action to
extend the reasonable period of time only in accordance with section
121.6(d). Because the final rule does not contemplate that the
reasonable period of time can be tolled or ``restarted,'' as described
below in this section, final regulatory text section 121.6(e) was also
edited from the proposal so as to increase clarity and to remove the
term ``restarting.''
Many commenters asked for clarification on a project proponent's
ability to withdraw and resubmit a request, noting that project
proponents often voluntarily withdraw and resubmit applications. Some
commenters requested that the Agency clarify what action a certifying
authority should take when a project proponent withdraws a request. In
response, the Agency notes that nothing in the final rule precludes
project proponents from voluntarily withdrawing requests of their own
accord. However, to prevent scenarios like the Hoopa Valley case, and
to address the EPA's policy concern about section 401 delays, the
Agency expects that project proponents will rarely voluntarily withdraw
requests for certification. The EPA expects that such withdrawals will
take place only if the project plans have been modified such that a new
certification request is required, or if the project is no longer
planned. If a project proponent withdraws a certification request
because the project is no longer being planned or if the project
materially changes from what was originally proposed, as described
above, the certifying authority no longer has an obligation to act on
that request within the reasonable period of time. In all cases,
project proponent withdrawals would not result in tolling or pausing
the clock, but rather any resubmitted request would be subject to the
pre-filing meeting request requirement. After receipt by the certifying
authority, the new request would initiate a new reasonable period of
time as determined by the federal agency.
Some commenters supported stopping the clock when project
proponents are not responsive to requests for additional information,
or do not provide adequate information to the certifying authority.
Some commenters requested clarification on whether withdrawn requests
that are resubmitted would restart a paused clock, or completely
restart the reasonable period of time. Commenters also asked for
clarification on whether the contents of the request, i.e., whether it
is substantially the same or a different request, would affect the
restarting of the clock.
The Agency is reaffirming in this final rule that the clock does
not toll for any reason. The Agency disagrees that the clock should
toll while project proponents gather additional information or for any
other reason, as there is no statutory basis for tolling. As described
above, the reasonable period of time begins when a certifying authority
receives a certification request as defined in the final rule, and it
ends when the certifying authority takes action to grant, grant with
conditions, deny, or waive. The Agency is clarifying that the
reasonable period of time does not continue to run after a
certification decision is issued regardless of whether there is time
remaining in the ``reasonable period of time.'' As explained in section
III.L of this notice, a certifying authority cannot modify the
certification after issuing a decision to the federal agency.
The EPA recognizes that there may be project-specific situations
when the reasonable period of time may be extended (not to exceed one
year) to account for project complexities or the need to gather
additional information. Procedures for extending the reasonable period
of time are explained above and included in the final rule. As
discussed above, the EPA expects voluntary withdrawals of certification
requests to occur only when the project has materially changed, as
described above, or is no longer planned. In such a case, a new request
would initiate a new reasonable period of time and would not
``restart'' the clock from a prior withdrawn request for certification.
The EPA would not expect such a new request to be identical to a
previously withdrawn request for certification.
Many commenters noted that given the proposed rule's shortened
timeframes, limitations on States and Tribes collecting additional
information, and provisions allowing the reasonable period of time to
begin prior to ``an application being complete,'' States may decide to
deny certification rather than risking the possibility that a federal
agency would determine that the State waived certification. These
commenters noted that the process of successive State denials of
certification and the resulting litigation could result in delaying
projects and defeating the intent of the proposed rule to promote
efficiency and certainty.
The Agency disagrees with these commenters. Neither the proposal
nor the final rule shortened the timeframe for certification. The
statute requires action on a certification request within a reasonable
period of time not to exceed one year. The proposed rule and this final
rule provide exactly the same timeframe as the statute provides. To the
extent commenters view the clarifications in the rule that the statute
does not authorize tolling or a ``withdrawal and resubmit'' scheme as
``shortening the timeframe,'' the Agency disagrees because these
mechanisms that have previously been used to
[[Page 42263]]
extend the reasonable period of time are not authorized by the statute.
Similarly, neither the proposal nor this final rule limits the ability
of a certifying authority to collect additional information from a
project proponent. The final rule provides an objective list of
information that a project proponent must provide to a certifying
authority to start the reasonable period of time. As described above,
this is intended to provide transparency and predictability so all
parties understand what information is necessary to start the
reasonable period of time. The Agency encourages the parties to engage
throughout the certification process to help ensure the certifying
authority has the information needed to act on the certification
request.
Additionally, the final rule includes a number of provisions that
should reduce the need for certifying authorities to deny certification
based on insufficient information. Section III.B of this notice
describes a mandatory pre-filing meeting request, which will allow
project proponents and certifying authorities to begin early
conversations about proposed projects prior to the start of the
reasonable period of time. Additionally, section III.C of this notice
discusses factors that a project proponent should consider in
determining when to submit a certification request, as the timing of
request submission affects the information that may be available for
certifying authorities to make timely decisions. Section III.C
identifies opportunities for federal licensing and permitting agencies
to establish by rule an appropriate point in the federal licensing or
permitting process when a project proponent should request
certification. Finally, this final rule establishes certain criteria
that the EPA as a certifying authority must follow when making
additional information requests (e.g., only requesting information that
is related to the discharge; only requesting information that can be
collected within the reasonable period of time). The Agency encourages
all certifying authorities to consider whether similar criteria would
help clarify expectations when certifying authorities seek additional
information during the certification process.
G. Contents and Effects of Certification
1. What is the Agency finalizing?
Under the final rule, any action by the certifying authority to
grant, grant with conditions, or deny a certification request must be
within the scope of certification, must be completed within the
reasonable period of time, and must otherwise be in accordance with
section 401 of the CWA. Alternatively, a certifying authority may waive
the certification requirement, whether expressly or by failing to act.
The Agency is finalizing the requirement that any action on a
certification request must be in writing and must clearly state whether
the certifying authority has chosen to grant, grant with conditions, or
deny certification. This final rule also requires that any express
waiver of the certification requirement by the certifying authority be
in writing.
Under the final rule, a certification must include certain
supporting information for each condition, including, at a minimum, a
statement explaining why the condition is necessary to assure that the
discharge from the proposed project will comply with water quality
requirements, and a citation to the federal, State, or Tribal law that
authorizes the condition. The final rule also includes slightly
different information requirements to support conditions in a
certification for issuance of a general license or permit. These
requirements are described in section III.M below. The EPA had proposed
also to require a statement of whether and to what extent a less
stringent condition could satisfy applicable water quality
requirements. The EPA is not including that provision in the final
rule.
In circumstances where certification is denied, the EPA is
finalizing the requirement that the written notification of denial
state the reasons for denial, including the specific water quality
requirements with which the discharge will not comply; a statement
explaining why the discharge will not comply with the identified water
quality requirements; and if the denial is due to insufficient
information, the denial must describe the specific water quality data
or information, if any, that would be needed to assure that the
discharge from the proposed project will comply with water quality
requirements. The Agency has made minor editorial changes to these
provisions in the final rule to increase clarity, but the final rule
provisions retain the same meaning as the proposed rule provisions. The
final rule also includes slightly different information requirements to
support a denial of a certification for issuance of a general license
or permit. These requirements are described in section III.M below.
Under the final rule, if a certification or denial does not include
the information requirements described further below, the certification
or the denial will be considered waived by the federal licensing or
permitting agency. Likewise, if a certification condition is not
supported by the required information, the condition will be considered
waived under the final rule. Under the final rule, a waived condition
does not result in waiver of the entire certification.
Additionally, if a certifying authority fails to follow the
procedural requirements of section 401, such as the public notice
provisions, or fails to complete its review within the reasonable
period of time, the certification will be deemed waived.
2. Summary of Final Rule Rationale and Public Comments
The CWA does not define the term ``certification'' or offer a
definitive list of its contents or elements. Section 304(h) of the CWA
requires the EPA to promulgate factors which must be provided in any
section 401 certification, and under section 501(a) the EPA may
reasonably interpret the statute to add content to those terms. See 33
U.S.C. 1251(d); 33 U.S.C. 1361(a); Chevron, 467 U.S. at 843-44. The
EPA's 1971 certification regulations included certification
requirements. In this final rule, EPA is updating those requirements
for each type of certification action and is more fully addressing the
effects of those actions.
a. Grant
Granting a section 401 certification demonstrates that the
certifying authority has concluded that the potential discharge into
waters of the United States from the proposed activity will be
consistent with water quality requirements. Granting certification
allows the federal agency to proceed with issuing the license or
permit. Consistent with the proposal, the final rule requires all
certification grants, with or without conditions, to be in writing and
to include a written statement that the discharge from the proposed
federally licensed or permitted project will comply with water quality
requirements, as defined at section 121.1(n) of the final rule. The
Agency has concluded that this is a straightforward requirement and one
that promotes transparency for the public.
b. Grant With Conditions
If the certifying authority determines that the potential discharge
from a proposed activity would be consistent with water quality
requirements only if certain conditions are met, the authority may
include such conditions in its certification. The EPA proposed that
three elements be included in a certification to support each
condition.
[[Page 42264]]
The Agency is finalizing two of those elements.
Some commenters supported the proposed requirement for certifying
authorities to cite applicable State or Tribal law and to provide an
explanation of the necessity for each condition. Some commenters agreed
that these requirements would provide transparency, and assist the
federal license or permitting agency with implementation and
enforcement. Other commenters asserted that these requirements would be
overly burdensome for certifying authorities. Some commenters asserted
that certifying authorities already generally cite the applicable State
laws and regulations on which they base their conditions, and other
commenters said that these requirements would create new obligations
for certifying authorities. Other commenters confirmed that the value
of including this information in every certification, in terms of
transparency and regulatory certainty, will far outweigh the minimal
additional administrative burden of including this information in a
certification. The EPA agrees that requiring an explanation for the
necessity of the condition and a citation to the underlying State,
Tribal, or federal laws, as appropriate, will promote transparency and
consistency and is finalizing these requirements. The EPA intends this
provision to require citation to the specific State or Tribal statute
or regulation or the specific CWA provision, e.g., CWA section
301(b)(1)(C), that authorizes the condition, and that general citations
to CWA section 401 or other general authorization or policy provisions
in federal, State, or Tribal law would be insufficient to satisfy the
proposed requirement.
Some commenters also supported the proposed requirement for
certifying authorities to identify whether a less stringent condition
could satisfy applicable water quality requirements. However, most
commenters asserted that this requirement would be burdensome for
certifying authorities, suggesting that States and Tribes would need to
conduct two detailed analyses for the certification: One to establish
appropriate conditions, and another to evaluate whether a less
stringent condition would be sufficient. A commenter suggested that
proposed section 121.5(d)(1) may conflict with proposed section
121.5(d)(3). This commenter recommended replacing section 121.5(d)(3)
with a requirement that the certifying authority include only the least
stringent conditions necessary to satisfy applicable water quality
requirements. The EPA has considered these comments. Under the final
rule, certifying authorities will not have to identify whether and to
what extent a less stringent condition could satisfy applicable water
quality requirements. As described in the preamble for the proposed
rule, this provision is included in the EPA's existing certification
regulations for the NPDES permit program (see 40 CFR 124.53(e)(3)), but
the EPA agrees with the commenters that asserted that it may be
difficult to provide an explanation as to why a condition is necessary
and to also identify a less stringent condition that could satisfy
water quality requirements.
The EPA disagrees with the suggestion that the information
requirements for conditions in section 121.5(d)(1) and (2) of the final
rule would be burdensome for certifying authorities. Certifying
authorities should already be generating this type of information to
build complete and legally defensible administrative records to support
their certification actions. As a general matter, if a certifying
authority determines that one or more conditions are necessary for a
section 401 certification, the certifying authority should clearly
understand and articulate why it is necessary and should identify the
legal authority for requiring such conditions. Including this
information in the certification itself provides transparency for the
project proponent, the federal licensing and permitting agency, and the
public at large. For these reasons, the EPA has determined that these
are appropriate requirements, and they are included in the final rule.
During pre-proposal stakeholder engagement, the EPA also heard from
federal agencies that, because several court decisions have concluded
that such agencies do not have authority to ``review and reject the
substance of a State certification or the conditions contained
therein,'' Am. Rivers, Inc., 129 F.3d at 106, non-water quality-related
conditions are often included in federal licenses and permits. Once
included in the federal license or permit, federal agencies have found
it challenging to implement and enforce these non-water quality-related
conditions. Additionally, stakeholders in pre-proposal engagement and
in public comments expressed concern that federal agencies do not
always enforce the certification conditions incorporated in their
federal licenses or permits.
EPA agrees that it is important for federal agencies to have a
clear understanding of the basis for certification conditions, because
conditions must be included in a federal license or permit. Several
appellate courts have analyzed the plain language of the CWA and
concluded that the Act ``leaves no room for interpretation'' and that
``state conditions must be'' included in the federal license or permit.
Sierra Club v. U.S. Army Corps of Engineers, 909 F.3d 635, 645 (4th
Cir. 2018) (emphasis in original); see also U.S. Dep't of Interior v.
FERC, 952 F.2d 538, 548 (D.C. Cir. 1992) (``FERC may not alter or
reject conditions imposed by the states through section 401
certificates.''); Am. Rivers, Inc. v. FERC, 129 F.3d 99, 107 (2d Cir.
1997) (recognizing the ``unequivocal'' and ``mandatory'' language of
section 1341(d)); Snoqualmie Indian Tribe v. FERC, 545 F.3d 1207, 1218
(9th Cir. 2008) (collecting cases). The EPA acknowledges commenters who
asserted that federal agencies may not consistently enforce
certification conditions, and also acknowledges that federal agencies
can apply discretion in enforcement decisions. However, providing a
citation to the legal authority underpinning a certification condition
is one way to make it easier for federal agencies to enforce these
conditions. Federal agencies during pre- and post-proposal engagement
acknowledged that this information will help them understand how best
to implement and enforce certification conditions. In addition,
including this information in each certification will provide
transparency for the overall certification process and allow the
project proponent to understand the legal basis for each condition and
to assess whether a condition is within the statute's lawful scope and
what recourse may be available to challenge it in an appropriate court
of competent jurisdiction. Overall, the EPA concludes that the benefits
of providing this information will significantly outweigh any
additional administrative burden that certifying authorities may incur
because of these new requirements.
One commenter asserted that the language in proposed section
121.8(b) should be changed from ``[t]he license or permit must clearly
identify any conditions that are based on the certification'' to
``[t]he license or permit must clearly identify any conditions that are
from the certification.'' This commenter asserted that the conditions
cannot be based on the certification because federal agencies do not
have authority to develop their own certification conditions or to
modify a condition in a certification prior to incorporating it into
the federal permit. The EPA has made this change in
[[Page 42265]]
section 121.10 of the final rule for clarity and to reaffirm that if a
condition meets the procedural requirements of section 401 and includes
the elements listed in 121.7(d) of the final rule, the condition must
be incorporated into the federal license or permit in its entirety, as
drafted by the certifying authority. Consistent with the proposal,
under the final rule, deficient certification conditions do not
invalidate the entire certification, nor do they invalidate the
remaining conditions in the certification. As discussed below, the
Agency has clarified in the final rule that conditions that do not meet
these requirements will be deemed waived.
c. Deny
A certifying authority may choose to deny certification if it is
unable to certify that the discharge from a proposed project would be
consistent with applicable water quality requirements. If a
certification is denied, the federal agency may not issue a license or
permit for the proposed project. Id. at 1341(a). Consistent with the
proposal, the final rule requires certification denials to be made in
writing and to include three elements to support certification denials.
The Agency has made minor editorial changes to these provisions in the
final rule to increase clarity, but the final rule provisions retain
the same meaning as the proposed rule provisions.
Some commenters agreed with the proposal to require certain
information in a certification denial. One commenter asserted that when
preparing denials, it would be helpful for certifying authorities to
specify water quality requirements with which the proposed project will
not comply, as this would assist federal agencies with their duty to
determine whether a section 401 certification facially satisfies the
requirements of section 401. Another commenter recommended that the
final rule also require a statement that there is no certification
condition which would prevent noncompliance with water quality
requirements.
Other commenters opposed the proposed requirement that
certification denials include ``the specific water quality data or
information, if any, that would be needed to assure that the discharge
from the proposed project complies with water quality requirements.''
These commenters asserted that this requirement was vague, unnecessary,
and burdensome and further asserted that it would improperly place a
new burden on certifying authorities that should be borne by project
proponents to show why their project complies with water quality
requirements. A few of these commenters recommended that insufficient
information should be a basis for denial.
As a general matter, the EPA disagrees with the suggestion that
including this information in a denial would be overly burdensome for
certifying authorities. Indeed, a number of States asserted in public
comments that the primary reason why certifications cannot be issued
within the reasonable period of time is that project proponents have
not provided sufficient information or a ``complete'' certification
request. If this is the case, certifying authorities should be able to
identify what information is lacking that precludes a determination
that the project will comply with water quality requirements, as the
term is defined in the final rule. Clearly establishing a record to
support the basis for a denial should already be done as a matter of
course to establish a complete defensible administrative record for the
certifying authority's action. Further, any denial should be informed
by the record before the certifying authority and should be issued with
information sufficient to allow the project proponent to understand the
basis for denial and have an opportunity to modify the project or to
provide new or additional information in a new certification request.
The EPA is finalizing the requirement that a certification denial
be in writing and include three elements to support the denial. The
required elements will lead to more transparent decision-making and a
more complete record of the administrative action. The final rule's
requirements may also facilitate discussions between certifying
authorities and project proponents about what may be necessary to
obtain a certification should the project proponent submit a new
certification request in the future. A certifying authority's
explanation of why a discharge from a proposed project will not comply
with relevant water quality requirements will also assist reviewing
courts in understanding whether the denial is appropriately based on
the scope of certification discussed in section III.E of this notice.
Some commenters asserted that the proposed rule would prohibit
certifying authorities from denying certification based on a lack of
information sufficient to grant certification. The EPA disagrees with
these commenters. Indeed, by requiring that ``if the denial is due to
insufficient information, the denial must describe the specific water
quality data or information, if any, that would be needed to assure
that the discharge from the proposed project will comply with water
quality requirements,'' the final rule reaffirms and clarifies that
insufficient information about the proposed project can be a basis for
a certification denial. If the certifying authority determines that
there is no specific data or information that would allow the
certifying authority to determine that the discharge will comply with
water quality requirements, it should indicate as such and provide the
basis for the determination in its written decision to deny
certification.
As noted in the preamble to the proposed rule, the EPA is aware
that some certifying authorities have requested ``additional
information'' in the form of multi-year environmental investigations
and studies, including completion of a NEPA review, before the
certifying authority would act on a certification request. As discussed
in section III.H of this notice, the final rule explicitly prohibits
the EPA from requesting additional information that cannot be generated
within the reasonable period of time. The rationale for this
prohibition applies to all certifying authorities; the Agency believes
that such requests for additional information, regardless of which
certifying authority generates such requests, would be contrary to the
plain language of the statute, which requires certifying authorities to
act on a request within a reasonable period of time that does not
exceed one year. While additional information requests may be a
necessary part of the certification process, such requests may not
result in extending the period of time beyond which the CWA requires
certifying authorities to act.
d. Waiver
When a certifying authority waives the requirement for a
certification, under this final rule the federal agency may proceed to
issue the license or permit in accordance with its implementing
regulations. A certifying authority may waive expressly by issuing a
written statement that it is waiving certification, or implicitly waive
by failing or refusing to act. Waiver may occur due to a failure or
refusal to act in accordance with the procedural requirements of
section 401 or within the reasonable period of time (see section III.F
of this notice), or by failing or refusing to provide information
required to support certifications (section 121.7(c) of the final rule)
or denials (section 121.7(e) of the final rule). A condition may also
be waived by failing or refusing to provide information required to
support
[[Page 42266]]
certification conditions (section 121.7(d) of the final rule).
i. Explicit Waiver
Under the final rule, a certifying authority may waive expressly by
issuing a written statement that it is waiving the requirement for
certification. Some commenters supported allowing certifying
authorities to explicitly waive certification. One commenter observed
that doing so could allow the federal permitting authority to proceed
more quickly with issuing a license or permit if it need not wait until
the end of the reasonable period of time. Several commenters asserted
that the statute does not provide for express waiver. A few other
commenters stated that certifying authorities should be required to
provide a detailed statement explaining their reasoning for waiving
certification.
The EPA has determined that, although the statute does not
explicitly provide for express or affirmative waiver, providing this
opportunity in the final rule is not inconsistent with a certifying
authority's ability to waive through failure or refusal. See EDF v.
Alexander, 501 F. Supp. 742, 771 (N.D. Miss. 1980) (``We do not
interpret [the Act] to mean that affirmative waivers are not allowed.
Such a construction would be illogical and inconsistent with the
purpose of this legislation.''). The EPA also agrees with the
commenters who stated that allowing explicit waivers may create
efficiencies in circumstances where the certifying authority knows
early in the process that it will waive. The EPA is not requiring
certifying authorities to provide a detailed statement explaining their
reasoning for waiving, as the Agency recognizes certifying authorities
may waive for a variety of reasons. Consistent with the proposal, the
final rule provides that a certifying authority may expressly waive by
providing written notification of waiver to the project proponent and
federal agency.
An express or affirmative waiver does not reflect a determination
that the discharge will comply with water quality requirements.
Instead, an express or affirmative waiver indicates that the certifying
authority has chosen not to act on a certification request. The EPA
agrees with the commenter who noted that express or affirmative waiver
enables the federal agency to proceed with issuing a license or permit
where the certifying authority has stated it does not intend to act,
thereby avoiding the need to wait for the reasonable period of time to
lapse.
ii. Implicit Waiver
The plain language of section 401(a)(1) provides that the
certification requirement is waived when a certifying authority ``fails
or refuses to act on a request for certification, within a reasonable
period of time (which shall not exceed one year).'' 33 U.S.C.
1341(a)(1). The Agency proposed to define ``fails or refuses to act''
with the intention of providing greater clarity for project proponents,
certifying authorities, and federal agencies about when an implicit or
constructive waiver could occur. The Agency is not finalizing the
proposed definition of ``fails or refuses to act'' and is instead
providing additional clarification in the final rule about specific
procedural failures that could trigger a federal agency to determine
that waiver has occurred.
Under the proposed rule, waiver would occur if the certifying
authority actually or constructively failed or refused to act within
the scope of certification or within the reasonable period of time. The
proposed rule preamble explained that the phrase ``fails or refuses to
act'' lends itself to at least two interpretations. Under one
interpretation, a certifying authority that takes no action, or refuses
to take action, has waived certification. Under an alternative
interpretation, a certifying authority that takes action beyond the
scope of section 401 has failed or refused to act in a way Congress
intended and has waived certification. The proposed definition was
intended to resolve this ambiguity in the statute.
Some commenters supported the proposed definition of ``fail or
refuse to act,'' including the implicit or constructive waiver
provision. A few commenters cited City of Tacoma v. FERC, 460 F.3d 53
(D.C. Cir. 2006), in support of the proposed rule, and these commenters
agreed that it would be appropriate for federal agencies to facially
review certifications. Some of these commenters said that this approach
is not supported by the text of the statute or by congressional intent.
Many commenters asserted that the legislative history of the waiver
provision makes clear that it was intended only to prevent a State's
sheer inactivity. One of these commenters noted that the legislative
history acknowledges that the waiver provision cannot protect against
arbitrary State agency action and that the courts are the forum to
challenge a State's refusal to give a certification.\61\ Some
commenters stated that allowing the federal agency to review a
certification denial as a failure to act is unreasonable and
essentially grants the federal government veto power over State action.
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\61\ The EPA observes that some legislative history related to
section 401 is internally inconsistent and should not be relied upon
as a definitive statement of congressional intent. The history
quoted by these commenters (H.R. Rep. No. 92-911, at 121-22 (1972))
says both that a failure or refusal amounts to waiver and that a
refusal must be addressed in a State court challenge brought by the
project proponent. ``In such situations, where there is conflicting
legislative history and `the statute is silent or ambiguous with
respect to the specific issue,' our [the court's] role is to
determine `whether the agency's answer is based on a permissible
construction of the statute.''' Smriko v. Ashcroft, 387 F.3d 279,
288 (3d Cir. 2004) (quoting Chevron); United States v. Deardorff,
343 F. Supp. 1033, 1037-38 (S.D.N.Y 1971) (the canon of statutory
interpretation that ``legislative history not be used to interpret a
statute that is clear and unambiguous on its face . . . is
particularly apposite where the legislative history is itself
somewhat ambiguous.'').
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The EPA disagrees with commenters who asserted that federal
agencies cannot review certifications. As discussed below, some courts
have concluded that federal agencies have an affirmative obligation to
determine whether a certifying authority has complied with requirements
related to a section 401 certification. See City of Tacoma v. FERC, 460
F.3d 53, 67-68 (D.C. Cir. 2006); Keating v. FERC, 927 F.2d 616, 622-
623, 625 (D.C. Cir. 1991). The final rule affirms that it is the
responsibility of the federal agency to facially review certifications
to ensure that certifying authorities have complied with the procedural
requirements of section 401. If a federal agency, in its review,
determines that a certifying authority failed or refused to comply with
the procedural requirements of the Act, including the procedural
requirements of this final rule, the certification action, whether it
is a grant, grant with conditions, or denial, will be waived.
After considering public comments and other enhancements in this
final rule, the Agency is not finalizing the definition of ``fail or
refuse to act.'' The Agency concludes that the key ambiguous term in
this statutory phrase is ``to act'' and reasonably interprets this term
to mean not just any act or action, but an act or action that is ``in
conformance with applicable statutes and regulations.'' The final rule
provides a clear and unambiguous list of actions that are not in
conformance with section 401 and that therefore amount to waiver. The
clarity in the final rule provides certifying authorities with
sufficient notice that all actions on certification requests must be
taken in accordance with the procedural requirements of the statute and
this final
[[Page 42267]]
rule. Accordingly, the Agency has decided that a separate definition of
``fail or refuse to act'' is not necessary. Treatment of procedural
deficiencies as waivers is consistent with the EPA's existing
regulations for the NPDES program. See 40 CFR 124.53(e)(2) (providing
that for certification on a draft permit, ``[f]ailure to provide such
citation waives the right to certify with respect to that condition'').
The waiver provision in section 121.9 of the final rule has been
expanded to provide additional clarity on the circumstances that amount
to a failure or refusal to act. As discussed in section III.G.2.e of
this notice, a federal agency must determine whether waiver has
occurred, either expressly or implicitly through a failure or refusal
to act. Section 401 provides that certifying authorities may take one
of four possible actions on a certification request: Grant, grant with
conditions, deny, or waive. As long as a certifying authority takes one
of these four actions within the reasonable period of time and in
accordance with the procedural requirements of the Act and this final
rule, the certifying authority will have acted on the certification
request. However, section 401 provides that where a certifying
authority ``fails or refuses'' to act on a certification request,
certification shall be waived. 33 U.S.C. 1341(a)(1). Under the final
rule, a certifying authority waives certification if it fails or
refuses to act on a certification request in accordance with the
procedural requirements of section 401 and this final rule, including
but not limited to issuing public notice, acting within the reasonable
period of time, providing certification for projects that are within
their jurisdiction, providing certification decisions in writing, and
including the information required to support a certification or
denial. The final rule also provides that a certification condition may
be waived if the certifying authority fails or refuses to provide
information required in section 121.7(d). Under the final rule,
deficient conditions are severable from the certification. In other
words, waiver of a specific certification condition does not waive the
entire certification.
e. Federal Agency Review of Certifications
The proposed rule would have required federal agencies to review a
certification action to determine whether it was issued in accordance
with the procedural requirements of the Act and determine whether the
action was taken within the ``scope of certification'' as provided in
the rule. The EPA has considered public comments and relevant court
decisions and is retaining in the final rule the requirement that
federal agencies review certification actions for compliance with the
procedural requirements of section 401, including procedural
requirements in this final rule. However, the final rule does not
require federal agencies to substantively evaluate or determine whether
a certification action was taken within the scope of certification. As
a general matter, federal agencies may not readily possess the
expertise or detailed knowledge concerning water quality and State or
Tribal law matters that would be necessary to make such substantive
determinations. The EPA has determined that other provisions of this
final rule, such as the definitions of ``water quality requirements,''
``discharge,'' and ``certification,'' and the information requirements
for certification conditions and denials listed in section 121.7(d) and
section 121.7(e), will help ensure that certifying authorities have the
information and necessary tools to act on a certification request
within the scope of certification as provided in this rule. The Agency
is not finalizing the provisions in section 121.6(c) and section
121.8(a)(1)-(2) of the proposed rule.
i. Federal Agency Procedural Review
The final rule requires federal agencies to determine whether a
certifying authority's certification, certification condition, or
denial includes the information requirements in sections 121.7(c),
121.7(d), or 121.7(e) of the final rule. This federal agency review is
entirely procedural in nature and does not require any specific
expertise or knowledge in water quality or State or Tribal law. Under
the final rule, the federal agency's review is limited to determining
whether the certification action was taken in accordance with
procedural requirements and whether the certification, condition, or
denial includes all of the required information. Federal agency review
under the final rule does not include a substantive evaluation of the
sufficiency of that information.
A few commenters supported the proposed requirement that federal
agencies substantively review water quality certifications and asserted
that such reviews would bring clarity and certainty to the water
quality certification process. These commenters also supported the
proposed authority for federal agencies to determine that constructive
waiver occurred for certifications, conditions, and denials that failed
to comply with procedural requirements of the rule. Some commenters
stated that allowing federal agencies to review and reject
certifications, conditions, and denials would violate the rights of
States and Tribes. Some commenters stated that section 401(a)(1), which
provides that ``[n]o license or permit shall be granted if
certification has been denied,'' prohibits the federal government from
vetoing denials. Some commenters stated that the EPA did not provide
any legal support from the CWA or case law for its proposed approach of
allowing federal review of certifications, conditions, and denials.
The Agency has made modifications in the final rule text to clarify
that federal agency review of certifications, conditions, and denials
is procedural in nature and does not extend to substantive evaluations.
The EPA's final regulatory text at sections 121.8 (Effect of denial of
certification), 121.9 (Waiver), and 121.10 (Incorporation of
certification conditions into the license or permit) contemplate that
the federal licensing or permitting agency will review certifications
only to ensure that certifying authorities have included certain
required elements and completed certain procedural aspects of a section
401 certification. Under the final rule, federal agencies are required
to determine whether certification denials include the three elements
listed in section 121.7(e). If certification denials do not include
these three elements, the certifying authority has ``fail[ed] or
refuse[d] to act'' (as explained in section III.G.2.d of this notice)
and therefore has waived certification. Similarly, federal agencies are
required to determine whether certification conditions include the two
elements listed in section 121.7(d) of the final rule. If the
certification conditions do not satisfy the requirements by listing
these two elements, the certifying authority has ``fail[ed] or
refuse[d] to act'' and will waive that deficient certification
condition.
In delineating such a role for federal licensing or permitting
agencies, the EPA has interpreted the statute reasonably and
appropriately. In City of Tacoma, Washington v. FERC, the Court of
Appeals for the D.C. Circuit noted that ``[i]f the question regarding
the state's section 401 certification is not the application of state
water quality standards but compliance with the terms of section 401,
then [the federal agency] must address it. This conclusion is evident
from the plain language of section 401: `No license or permit shall be
granted until the certification required by this section has been
obtained or has been waived.' '' 460 F.3d at 67-68 (citing 33 U.S.C.
[[Page 42268]]
1341(a)(1)) (emphasis in original). The court went on to explain that
even though the federal agency did not need to ``inquire into every
nuance of the state law proceeding . . . it [did] require [the federal
agency] at least to confirm that the state has facially satisfied the
express requirements of section 401.'' Id. at 68; see also Hoopa Valley
Tribe v. FERC, 913 F.3d 1099, 1105 (D.C. Cir. 2019) (``had FERC
properly interpreted Section 401 and found waiver when it first
manifested more than a decade ago, decommissioning of the Project might
very well be underway''); Airport Communities Coalition v. Graves, 280
F. Supp.2d 1207, 1217 (W.D. Wash. 2003) (holding that the Army Corps
had discretion not to incorporate untimely certification conditions).
Some commenters stated that allowing federal review of water
quality certifications would ignore the fact that the States and Tribes
are the experts on their water resources and know what is necessary to
assure that the water quality standards passed under State and Tribal
law are met. Another commenter requested clarification about whether
the EPA would provide any assistance or guidance to federal agencies as
they review certification denials and asked for clarification about how
the EPA would ensure consistency and reliability across such decisions.
As discussed below, the final rule does not require the federal
agency to make a substantive inquiry into the sufficiency of the
information provided in support of a certification, condition, or a
denial. Rather, the final rule requires only that the federal agency
confirm that the certifying authority has complied with procedural
requirements of the Act and these regulations and has included the
required information in a certification, condition, or denial. Although
this limited review function may be new to some federal agencies, it is
consistent with the EPA's own longstanding practice under its NPDES
regulations implementing section 401 that allow the EPA to make such
determinations under certain circumstances. See 40 CFR 124.53(e). Under
the final rule, if a certification, condition or denial meets the
procedural requirements of section 401 and this final rule, the federal
agency must implement the certifying authority's action, irrespective
of whether the federal agency may disagree with aspects of the
certifying authority's substantive determination.
ii. Federal Agency Review of Scope
The proposed rule would have required federal licensing and
permitting agencies to review and determine whether certifications,
conditions, and denials are within the ``scope of certification,'' as
articulated in this final rule. The final rule does not include this
additional substantive federal agency review requirement.
A number of commenters supported the proposed language that would
allow a federal agency to set aside certification conditions or denials
that are not within the ``scope of certification.'' Some of these
commenters agreed that conditions should not be included in licenses or
permits if they do not meet the definition of ``water quality
requirements'' under the final rule. One of these commenters stated
that federal agency review of certifications would allow issues of
scope to be resolved expeditiously by the federal agency through the
federal licensing or permitting process, rather than by forcing the
applicant to challenge the certification decision through a separate
administrative or judicial appeal process, which could take months or
years to resolve. The commenter also asserted that the proposal would
allow the federal agency to protect the integrity of its licensing or
permitting process by rejecting conditions that exceed the scope of
section 401 even if the applicant chooses not to challenge the
conditions. Another commenter asserted that the federal agency has an
obligation to determine that a certification decision ``complies with
the terms of section 401,'' and that this obligation is supported by
case law. The commenter maintained that this obligation logically also
includes the obligation to confirm that certification conditions are
within the scope of section 401.
Other commenters asserted that the proposed approach would conflict
with sections 401(a) and (d) because, they assert, that under section
401(a) a federal license or permit may not issue if certification is
denied, and under section 401(d), federal agencies have no authority to
review or veto State or Tribal conditions or certifications. These
commenters stated that the proposed provision would improperly
circumvent judicial review. Some commenters stated that the proposed
rule's federal agency review provision is in contravention of the
legislative intent. Some commenters stated that judicial precedent
prohibits the EPA from authorizing federal agencies to review the scope
or grounds for State and Tribal decisions on water quality
certifications. One commenter stated that the authority of federal
agencies to review State section 401 certifications is narrow and
limited to ensuring that the State complies with the specific
procedural requirements set forth in section 401, citing City of
Tacoma, Wash. v. FERC, 460 F.3d 53 (D.C. Cir. 2006); Alcoa Power
Generating Inc. v. FERC, 643 F.3d 963 (D.C. Cir. 2011); Keating v.
FERC, 927 F.2d 616 (D.C. Cir. 1991). A few commenters stated that a
federal agency's scope of review would lead to more confusion and
litigation and would make the certification process more time
consuming.
The Agency has considered this diverse range of opinions. For the
reasons explained above, the Agency has concluded that under the final
rule, federal agencies have an affirmative obligation to review
certifications to ensure that certifying authorities have complied with
procedural requirements and have included the required information for
certifications, conditions, and denials. But the final rule does not
authorize federal agencies to substantively review certifications or
conditions to determine whether they are within the scope of
certification. The EPA disagrees with commenters who assert that
section 401(d) unambiguously requires one approach or another. As
described throughout the proposed and final rule preambles, there are
widely varying views and interpretations of section 401, and relevant
court decisions reflect these disparate views and interpretations. The
final rule provides a framework for section 401 water quality
certifications that is reasonable, is supported by the language of the
CWA, and will provide greater clarity and regulatory certainty.
One commenter stated that none of the cases cited by the EPA in the
proposed rule suggested that federal agencies have authority to review
the substance of State-imposed section 401 conditions to determine
whether they comply with the EPA's view of the appropriate scope of the
statute. The same commenter stated that the proposal's rationale that
federal agencies have struggled to enforce State certification
conditions misses the point and that enforcement of certification
conditions may also be initiated by the appropriate States through
State law, citing Delaware Riverkeeper Network v. Secretary of Penn.
Dep't of Envt'l Protection, 833 F.3d 360 (3d Cir. 2016). One commenter
stated that EPA Office of General Counsel opinions have previously
``interpreted [401(d)] broadly to preclude federal agency review of
state certifications,'' citing Roosevelt Campobello Inter. Park v. U.S.
EPA, 684 F.2d 1041, 1056 (1st Cir. 1982) (citing opinions of the EPA
Office of General Counsel on the issue). Some commenters also stated
that to review a condition to determine whether it falls
[[Page 42269]]
substantively within the scope of water quality requirements would
create a substantial burden on federal agencies making these types of
determinations.
Some commenters stated that the proper place for water quality
certifications and their conditions to be challenged is in court,
particularly State court. Some commenters stated that State courts are
the appropriate venue to challenge water quality certifications because
those certifications are issued under State law and State courts know
how best to interpret State law. Some commenters stated that the
legislative history for the 1972 amendments to the CWA repeatedly shows
that Congress intended conflicts regarding the scope of section 401 to
be resolved by State courts, not federal agencies.
For the reasons articulated in the proposed and final rule
preambles, the EPA disagrees with the proposition that relevant case
law precludes any federal review of certification conditions. The EPA
also disagrees with one commenter's assertion that, as a general
matter, States may independently enforce certification conditions
through State law. See section III.K.2.a of this notice for further
discussion on the enforcement of certification conditions within
federal licenses or permits. Although the proposed requirement was
consistent with the principle that federal agencies have the authority
to reject certifications or conditions that are inconsistent with the
requirements and limitations of section 401 itself (see City of Tacoma,
Wash. v. FERC), the final rule reflects the EPA's conclusion that
courts of competent jurisdiction are better suited to evaluate the
underlying State or Tribal law to determine whether a specific
certification condition or the basis for a denial is within the scope
of certification. The EPA also acknowledges that existing lower court
case law on this topic is mixed, and that requiring federal agencies to
conduct a substantive review to determine whether conditions or denials
are within the scope of certification could create new litigation risk
(including litigation-related staffing and cost burdens) for those
federal agencies and further complexity and uncertainty concerning the
appropriate path for remedying a substantively unlawful certification
condition or denial. The final rule's scope of certification, requiring
that ``conditions'' be within that scope, and requiring certifying
authorities to provide specific information in support of a condition
or a denial, will help provide reviewing courts with the information
and tools necessary to conduct a proper evaluation of certification
conditions and denials.
iii. Remedying Deficient Conditions and Denials
The proposed rule would have allowed federal agencies to provide
certifying authorities with the opportunity to remedy deficient
conditions and denials. However, in response to public comments and to
increase clarity in the final rule, the Agency is not finalizing these
provisions.
Commenters expressed a variety of viewpoints about whether federal
agencies can or should provide certifying authorities with the
opportunity to remedy deficient conditions and denials. One commenter
did not support providing certifying authorities with the opportunity
to remedy conditions that are not related to water quality, while other
commenters asserted that the ability to remedy deficient conditions
should be mandatory rather than discretionary. Some commenters
expressed concern regarding timeframes for federal review, notification
to States and Tribes, and opportunity for States and Tribes to remedy
water quality certifications and suggested that the opportunity to cure
a deficient condition could effectively shorten the reasonable period
of time. Commenters also requested that certifying authorities should
be able to remedy deficient conditions regardless of whether the
reasonable period of time has expired, or at least up until the one-
year maximum reasonable period of time specified in the CWA. Some
commenters expressed concern that the proposal did not provide an
administrative appeal process for a certifying authority to dispute
that conditions and denials are in fact ``deficient.''
The Agency has considered these comments and determined not to
include in the final rule an express allowance for certifying
authorities to remedy deficient conditions after the certification
action is taken. The Agency recognizes and agrees with many of the
implementation and process-related concerns raised by commenters,
including concerns that there may not be sufficient time to remedy
deficient conditions during the established reasonable period of time.
The EPA disagrees with the commenters who asserted that the certifying
authority must be given an opportunity to remedy deficient conditions
even after the reasonable period of time has expired. The final rule
contains additional clarification on procedural and substantive
requirements. These clarifications should provide certifying
authorities with the information and tools necessary to act on
certification requests consistent with section 401 and within the scope
of certification provided in this final rule, reducing the need to
remedy deficient conditions or denials. The EPA has concluded in the
final rule that if a federal licensing or permitting agency wishes to
create procedures whereby certifying authorities may remedy deficient
conditions or denials, it may do so in its own water quality
certification regulations. Such procedures may not be used to exceed
the one-year statutory limit on the reasonable period of time. The
approach in the final rule provides sufficient flexibility to those
federal agencies should they wish to update their water quality
certification regulations to provide additional procedures for
remedying deficient certification conditions or denials.
H. Certification by the Administrator
1. What is the Agency finalizing?
In the final rule, the Agency is establishing specific procedures
regarding public notice and requests for additional information that
apply only when the EPA is the certifying authority. As discussed in
section III.B of this notice, the Agency proposed to require pre-filing
meeting procedures only when the EPA is the certifying authority, but
the final rule expands the requirement for pre-filing meeting requests
to all project proponents, including federal agencies when they seek
certification for general licenses or permits, regardless of the
certifying authority. The rationale for expanding this practice to all
section 401 certifying authorities as a best practice for all
certification actions is more fully explained in section III.B of this
notice.
2. Summary of Final Rule Rationale and Public Comments
Section 401(a)(1) of the CWA provides that ``[i]n any case where a
State or interstate agency has no authority to give such a
certification, such certification shall be from the Administrator.'' 33
U.S.C. 1341(a)(1). Currently, all States have authority to implement
section 401 certification programs. However, the EPA acts as the
certifying authority in two scenarios: (1) On behalf of federally
recognized Indian Tribes that have not received TAS for section 401,
and (2) on lands of exclusive federal jurisdiction, such as Denali
National Park. When acting as a certifying authority, the EPA is
subject to the same timeframes and section 401 certification
requirements as other
[[Page 42270]]
certifying authorities. This section outlines additional procedures
that apply only when the EPA is the certifying authority.
The first scenario arises when Tribes do not obtain TAS
authorization for section 401 certifications. As discussed in section
II.F.1 of this notice, Tribes may obtain TAS authorization for purposes
of issuing CWA section 401 certifications. If a Tribe does not obtain
TAS for section 401 certifications, the EPA is responsible to act as
the certifying authority for projects resulting in a potential
discharge into waters of the United States on Tribal land.
The second scenario arises when the federal government has
exclusive federal jurisdiction over land. The federal government may
obtain exclusive federal jurisdiction in multiple ways, including where
the federal government purchases land with State consent to
jurisdiction, consistent with article 1, section 8, clause 17 of the
U.S. Constitution; where a State chooses to cede jurisdiction to the
federal government; and where the federal government reserved
jurisdiction upon granting statehood. See Collins v. Yosemite Park Co.,
304 U.S. 518, 529-30 (1938); James v. Dravo Contracting Co., 302 U.S.
134, 141-42 (1937); Surplus Trading Company v. Cook, 281 U.S. 647, 650-
52 (1930); Fort Leavenworth Railroad Company v. Lowe, 114 U.S. 525, 527
(1895). For example, the federal government retained exclusive
jurisdiction over Denali National Park in Alaska's Statehood Act.
Alaska Statehood Act, Public Law 85-508, 72 Stat. 339 (1958).
The EPA's 1971 certification regulations identified circumstances
where the Administrator certifies instead of a State, Tribe, or
interstate authority, and limited the Administrator's certification to
certifying that a potential discharge ``will not violate applicable
water quality standards.'' 40 CFR 121.21. However, this language
reflects the language of section 21(b) of the FWPCA (1970) and is not
consistent with the statutory language of section 401(a), which
requires authorities to certify that the potential discharge will
comply with the applicable provisions of CWA sections 301, 302, 303,
306, and 307. In this final rule, the Agency is modernizing and
clarifying its regulations by finalizing the following text in section
121.13(a):
Certification by the Administrator that the discharge from a
proposed project will comply with water quality requirements is
required where no state, tribe, or interstate agency has authority
to give such a certification.
In circumstances where the EPA is the certifying authority and the
water body impacted by the proposed discharge does not have any
applicable water quality standards, the EPA's 1971 certification
regulations provided the EPA with an advisory role. 40 CFR 121.24. The
statute does not explicitly provide for this advisory role, and
therefore, this final rule does not include a similar provision.
However, the Agency believes that the technical advisory role provided
in section 401(b) and discussed in section III.J of this notice is
sufficient to authorize the EPA to play an advisory role in such
circumstances. As a result, omitting this text in the final rule is
unlikely to change the Agency's existing practice. 33 U.S.C. 1341(b).
Commenters provided feedback on a few general aspects of this
topic. Several commenters expressed the importance of the
Administrator's certification authority where a Tribe or interstate
authority lacks such authority. Some of these commenters stressed that
the EPA has a trust obligation to protect water quality for those
Tribes that lack TAS and a responsibility to provide Tribes with an
opportunity for meaningful input. One commenter stated that the EPA had
not provided a list or map of the geographic areas in which it intends
to assert certification authority and requested that the EPA explicitly
identify all lands within its jurisdiction and the basis for EPA's
jurisdictional assertion.
The EPA has a statutory obligation to act as a certifying
authority, pursuant to CWA section 401(a)(1). Separately, pursuant to
the Agency's 1984 Indian Policy (EPA Policy for the Administration of
Environmental Programs on Indian Reservations, see https://www.epa.gov/tribal/epa-policy-administration-environmental-programs-indian-reservations-1984-indian-policy), the EPA has a responsibility to
coordinate with Tribes when making decisions and managing environmental
programs that affect reservation lands. The EPA takes these obligations
and responsibilities seriously. Consistent with the CWA, the final rule
directs the EPA to act as the certifying authority on behalf of Tribes
that do not have TAS for CWA section 401. Under the final rule, the EPA
does this by determining whether the potential discharge from a
proposed project will comply with water quality requirements, as
defined and explained in section III.E.2.b of this notice. As provided
in section 401(a)(1) and in section 121.7(f) of the final rule, if
there are no water quality requirements applicable to the waters
receiving the discharge from the proposed project, the EPA will grant
certification. The Agency will continue to comply with the EPA Policy
on Consultation and Coordination with Indian Tribes when certifying on
behalf of Tribes and disagrees with commenters who suggested that this
rule would preclude Tribes from contributing meaningful input.
The EPA does not maintain a national map of lands for which the
Agency serves as the certifying authority, as such borders may on
occasion change as Tribes continue to annex and cede lands. Rather, it
is the duty of the project proponent to determine the appropriate
certifying authority when seeking a section 401 certification. The EPA
acknowledges that there may be potential for jurisdictional overlap
between certifying authorities at certain project sites (e.g., at the
boundaries of Tribal lands), and the Agency believes that the
requirement for project proponents to request a pre-filing meeting with
certifying authorities will provide an opportunity for clarifying
discussions about which agency or organization is the proper certifying
authority.
Some commenters expressed confusion about whether the ``EPA as the
certifying authority requirements'' in the proposed rule applied to
just the EPA, or to all certifying authorities, and one commenter
asserted that subpart D of the proposed regulatory text should not use
the term ``certifying authority'' to define those instances in which
the EPA is taking action. The Agency disagrees that using the term
``certifying authority'' in subpart D of the proposed regulatory text
is unclear, as subpart D of the proposed rule is titled ``Certification
by the Administrator'' and section 121.11(c) of the proposed rule
explained that for purposes of this subpart the Administrator is the
certifying authority. However, to avoid any potential for confusion,
the EPA has replaced the word ``certifying authority'' with ``the
Administrator'' throughout subpart D of the final rule. As noted above,
when the EPA is the certifying authority, it must comply with all of
the requirements in the final rule, not just subpart D.
This final rule includes two sets of procedural requirements that
would apply only when the Administrator is the certifying authority:
(1) Clarified public notice procedures, and (2) specific timelines and
requirements for the EPA to request additional information to support a
certification request. These requirements are discussed below and are
included in final rule sections 121.15 and 121.14.
[[Page 42271]]
The EPA also proposed a third set of procedural requirements that
would have applied only when the Administrator is the certifying
authority: Pre-filing meeting request requirements. As explained in
section III.B of this notice, the EPA is finalizing a requirement that
all project proponents, including federal agencies when they seek
certification for general licenses or permits, submit a pre-filing
meeting request to the certifying authority, regardless of whether the
Administrator is the certifying authority. This requirement is now in
section 121.4 of final rule subpart B, rather than in subpart D.
Some commenters recommended extending all three of these sets of
proposed requirements to all certifying authorities. Other commenters
recommended that none of the proposed requirements should apply to all
certifying authorities. The EPA has considered the conflicting
perspectives in these comments and has concluded in this final rule
that only the pre-filing meeting request requirements will apply to all
certifying authorities, as described in section III.B of this notice.
a. Public Notice Procedure
Section 401 requires a certifying authority to provide procedures
for public notice, and a public hearing where necessary, on a
certification request. Some courts have held that this includes a
requirement for public notice itself. City of Tacoma, 460 F.3d at 68.
The 1971 certification regulations at 40 CFR part 121.23 described the
EPA's procedures for public notice after receiving a request for
certification. The EPA is updating its regulations to provide greater
clarity to project proponents, federal agencies, and other interested
parties concerning the EPA's procedures for public notice when the
Administrator is the certifying authority.
Under the final rule, when the Administrator is the certifying
authority, the Agency will provide appropriate public notice, within 20
days of receipt of a certification request, to parties known to be
interested. If the EPA in its discretion determines that a public
hearing is appropriate or necessary, the Agency will, to the extent
practicable, give all interested and affected parties the opportunity
to present evidence or testimony at a public hearing.
One commenter stated that the public should be kept informed of the
section 401 process and proposed project plans, especially for large
projects. Another commenter suggested that public participation
requirements in the section 401 certification review process should be
expanded, which they maintained would lead to better identification of
projects that should be denied certification because of adverse effects
on water quality. A few commenters disagreed with the proposition that
public notice should be limited to parties known to be interested and
asserted that notice should be provided to the general public. One
commenter suggested that the public should receive a minimum of 30-
days' notice prior to a hearing, or another timeframe tied to the date
when information is made available for public review.
The EPA appreciates the public commenters who provided feedback on
the public notice process for when the EPA is the certifying authority.
The public notice and hearing process in the final rule will ensure
that the Agency keeps the public informed about the section 401
certification process and proposed project plans. The proposed rule
included a list of potentially interested parties, such as Tribal,
State, county, and municipal authorities, heads of State agencies
responsible for water quality, adjacent property owners, and
conservation organizations. To avoid artificially or unintentionally
narrowing the universe of potentially interested parties, this list is
not included in the final rule. The procedures in the final rule,
including providing notice to interested parties, will provide
sufficient public notice, as required in section 401, and will provide
the public with an opportunity to inform the EPA's certification
decision through public comments. Under the final rule, the Agency may
also, at its discretion, determine whether a public hearing is
appropriate and necessary. In such cases, all interested and affected
parties would be given the opportunity to present evidence or testimony
at a public hearing. The Agency is not prescribing a single timeframe
for the length of public notice under the final rule. The appropriate
timeframe for notice and comment is more appropriately determined on a
case-by-case basis, considering project-specific characteristics as
well as the length of the established reasonable period of time. In
general, the EPA anticipates that public notices will provide for a 30-
day comment period; however, comment periods as short as 15 days or as
long as 60 days may be warranted in some cases, based on the nature of
the project and the reasonable period of time. The public hearing may
be conducted in-person, or remotely (through telephone, online, or
other virtual platforms), as deemed appropriate by the Agency.
b. Requests for Additional Information
The definition of a certification request in this final rule
identifies the information that project proponents are required to
provide to certifying authorities when they submit a certification
request. However, in some cases, the EPA may conclude that additional
information is necessary to determine that the potential discharge will
comply with water quality requirements (as defined at section 121.1(n)
of the final rule). Section 401 does not expressly address the issue of
whether and under what circumstances a certifying authority may request
additional information to review and act on a certification request.
The EPA concluded that it is reasonable and consistent with the CWA's
statutory framework that when the Administrator is the certifying
authority, the Agency be afforded the opportunity to seek additional
information necessary to do its job. However, consistent with the
statute's firm timeline to act on a certification request, it is also
reasonable to assume that Congress intended some appropriate limits be
placed on the timing and nature of such requests. This final rule fills
the statutory gap and provides a structure for the Administrator as the
certifying authority to request additional information and for project
proponents to timely respond. Consistent with the proposal, this final
rule includes procedural requirements and timeframes for action that
will provide transparency and regulatory certainty for the Agency and
project proponents. However, in response to public comments and to
increase clarity, the Agency has provided enhancements to the final
rule text.
Some commenters stated that the procedures proposed for when the
EPA is the certifying authority would inhibit the EPA from seeking
additional information on water quality effects relevant to making a
certification decision. Some of these commenters stated that this would
lead to unnecessary denials of certification where, had better
information been developed, a certification may have been granted. The
Agency disagrees with the suggestion that the procedures proposed for
when the EPA is the certifying authority would lead to certification
decisions based on incomplete information. Consistent with the
proposal, the EPA must request information within 30 days of receipt.
The final rule includes additional
[[Page 42272]]
clarifications that if the EPA finds it necessary to request additional
information, then the EPA must make an initial request within 30 days
of receipt. Nothing in the regulation precludes the EPA from making
additional information requests at a later point in the process after
an initial request is made, so long as that information can be
developed by the project proponent and considered by the EPA within the
reasonable period of time. This final rule acknowledges that certifying
authorities like the EPA need relevant information as early as possible
to review and act on section 401 certification requests within the
reasonable period of time. As discussed in section III.B of this
notice, the pre-filing meeting request requirement under this final
rule is intended to ensure that the EPA has an opportunity to engage
with the project proponent early, learn about the proposed project, and
consider what, if any, additional information might be needed from the
project proponent.
Under the final rule, if the Agency needs additional information,
an initial request for information must be made to the project
proponent within 30 days after the receipt of a certification request.
Additional information may include, for example, more detail about the
contents of the potential discharge from the proposed project or
specific information about treatment or waste management plans or
additional details about discharges associated with the operation of
the facility. The final rule does not preclude the Agency from making
additional requests for information, but such requests for information
must still comply with the requirements outlined below in this section
of the final rule preamble.
The EPA is finalizing a provision that when the Administrator is
the certifying authority, the Agency can request only additional
information that is within the scope of certification and is directly
related to a potential discharge from the proposed project and its
potential effect on the receiving waters. Some commenters supported the
proposal to limit additional information requests to information within
the scope of the section 401 certification, while other commenters
disagreed with the limitation. The Agency considered these and other
comments and is finalizing this provision with minor modifications to
provide clarity and certainty when the EPA is the certifying authority.
Several commenters stated that the proposal would not distinguish
between complex and simple projects and noted that the type of
information needed to develop a certification for a complex project,
such as a 30- or 50-year FERC license, would not be the same as that
needed for a shorter-term or simpler project. The EPA agrees with
commenters that information needs may differ depending on the
complexity of the proposed project and other project-specific factors.
The final rule provides sufficient flexibility for the Administrator to
request project-specific information to help inform the certification
decision. To ensure that the Agency's action remains within the scope
of certification, the EPA has determined that any additional
information requested must be within the scope of certification and
must be directly related to the discharge from the proposed project and
its potential effect on receiving waters. In addition to ensuring that
the Agency acts within the scope of certification, limiting the type of
information that the EPA may request as the certifying authority
eliminates unnecessary and burdensome requests. Doing so also limits
EPA review of information irrelevant to the Agency's decision-making
process.
The EPA is also finalizing a provision that when the Administrator
is serving as the certifying authority, the Agency can request only
additional information that can be collected or generated within the
established reasonable period of time. Some commenters disagreed with
this provision, and one commenter asserted that this provision would
contravene the CWA and the statute's emphasis on protecting human
health and the environment. Several commenters stated that the proposal
defers to a project proponent to determine what information may
reasonably be developed during the ``reasonable period of time,''
because the project proponent could claim that it would take too long
to collect or generate the information.
The Agency disagrees with commenters that suggested that this
provision defers to project proponents to determine what information
may be developed during the reasonable period of time. In most cases,
it should be objectively known whether certain information can be
generated or collected within the reasonable period of time. For
example, a multi-year study cannot be conducted within a 12-month
reasonable period of time. Similarly, a 180-day study cannot be
conducted within a 60-day reasonable period of time. In the event of
disputes between the EPA and the project proponent about whether
certain new information can be collected or generated within the
reasonable period of time, the EPA will engage directly and in good
faith with the project proponent to resolve the dispute.
This final rule is also intended to address issues that have caused
delays in certifications and project development and that have resulted
in protracted litigation. Although these provisions apply only when the
EPA is the certifying authority, they may serve as models for other
certifying authorities. For example, the Agency is aware that some
certifying authorities have requested ``additional information'' in the
form of multi-year environmental investigations and studies, including
completion of a NEPA review, before the authority would even begin
review of the certification request.\62\ Consistent with the plain
language of section 401, under this final rule, when the Administrator
is acting as the certifying authority, such requests from the EPA would
not be authorized because they would extend the statutory reasonable
period of time, which is not to exceed one year. This final rule
provides clarity that, while additional information requests may be a
necessary part of the certification process, such requests may not
result in extending the period of time beyond which the CWA requires
the Agency to act.
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\62\ Some stakeholders have suggested that it may be challenging
for a state to act on a certification request without the benefit of
review under NEPA or a similar state authority. See, e.g., Cal. Pub.
Res. Code Section 21000 et seq.; Wash. Rev. Code Section 43.21C.150.
Consistent with the EPA's 2019 Guidance, the EPA recommends that
certifying authorities do not need to delay action on a
certification request until a NEPA review is complete. The
environmental review required by NEPA has a broader scope than that
required by section 401. For example, the NEPA review evaluates
potential impacts to all environmental media, as well as potential
impacts from alternative proposals that may not be the subject of a
federal license or permit application. By comparison, a section 401
certification review is far more narrow and is focused on assessing
potential water quality impacts from the proposed federally licensed
or permitted project. Additionally, many NEPA reviews have taken
more than one year to complete. Waiting for a NEPA process to
conclude may result in waiver of the certification requirement for
failure to act within a reasonable period of time. To the extent
that State or Tribal implementing regulations may have required a
NEPA review to be completed as part of a section 401 certification
review, the EPA encourages certifying authorities to update those
regulations to incorporate deadlines consistent with the reasonable
period of time established under the CWA, or to decouple the NEPA
review from the section 401 process, so as to ensure timely action
on section 401 certification requests and to avoid waiver by the
certifying authority.
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Under this final rule, when the Administrator is acting as the
certifying authority, in any request for additional information, the
EPA must include a deadline for the project proponent to respond. The
deadline must allow sufficient time for the Agency to review
[[Page 42273]]
the additional information once it is received, and to act on the
certification request within the established reasonable period of time.
Many commenters asserted that the proposed rule would not require
project proponents to timely respond to requests for additional
information. Some commenters requested that the EPA clearly state that
failure by the project proponent to complete a section 401
certification request or provide requested additional information
within a specified time period should be grounds for denial of
certification.
The Agency disagrees with the suggestion that the project proponent
would not be required to timely respond to requests for additional
information. Under the final rule, when the Administrator is the
certifying authority, project proponents must submit requested
information by the EPA's deadline. The Agency has clarified in section
121.14(e) that a project proponent's failure to provide additional
information does not prevent the Administrator from taking action on a
certification request. If the project proponent fails to submit the
requested information, the Agency may conclude that it does not have
sufficient information to certify that a potential discharge will
comply with applicable water quality requirements and may therefore
deny the certification request. The EPA may also use its expertise to
evaluate the potential risk associated with the remaining information
or data gap and to consider granting certification within the
reasonable period of time with conditions to address those potential
risks. The EPA expects that when the Administrator is the certifying
authority, these procedures will provide clarity and regulatory
certainty to the EPA and project proponents. The EPA notes that States
and Tribes may choose to adopt similar provisions to ensure that all
certifying authorities are working effectively and in good faith to act
on certification requests within the reasonable period of time, and
that denials based on a lack of information are not done simply for
administrative purposes but because additional information is needed to
assure that the discharge from the proposed project will comply with
water quality requirements and the lack of information cannot be
addressed by appropriate certification conditions. The EPA further
notes that under the proposal and this final rule, certifying
authorities are not obligated to act on incomplete certification
requests. If a certification request is not complete as required by
this final rule, the reasonable period of time does not begin.
I. Determination of Effect on Neighboring Jurisdictions
1. What is the Agency finalizing?
Consistent with the proposal, under the final rule, if the EPA in
its discretion determines that a neighboring jurisdiction may be
affected by a discharge from a federally licensed or permitted project,
the EPA must notify the affected jurisdiction, the certifying
authority, and the federal agency within 30 days of receiving the
notice of the certification from the federal agency. The final rule
includes certain enhancements to the proposed rule to increase clarity
and regulatory certainty, as explained below in this section of the
final rule preamble.
2. Summary of Final Rule Rationale and Public Comment
Section 401(a)(2) requires federal agencies to immediately notify
the EPA when a certification is issued by a certifying authority for a
federal licensing or permitting application. Section 401(a)(2) also
provides a mechanism for the EPA to notify States and authorized Tribes
where the EPA has determined the discharge from a proposed federally
licensed or permitted project subject to section 401 may affect the
quality of their waters. The EPA's 1971 certification regulations
established procedural requirements for this process but required
updating to align with CWA section 401 and to establish additional
clarity. The EPA recognizes that federal agencies may have different
processes to satisfy this requirement and will continue to work with
these agencies to ensure that the Agency is notified of all
certifications. The final rule does not contain a standardized process
for federal agencies to immediately notify the EPA when certifications
are issued. The EPA expects federal agencies to develop notification
processes as they update their certification regulations in accordance
with the Executive Order. The final rule provides flexibility for
federal agencies to develop processes and procedures that work best
within their licensing or permitting programs. Additionally, the Agency
has made minor, non-substantive modifications to the regulatory text at
section 121.12(a) to clarify that the federal agency's statutory
obligation to notify the EPA is triggered when the federal agency
receives a federal license or permit application and the related
certification. The text of section 401(a)(2) provides that the federal
agency must ``immediately'' notify the EPA of such application and
certification. To aid in clarity and implementation, the Agency
reasonably interprets ``immediately'' to mean within five days of the
Federal agency's receiving notice of the certification. 33 U.S.C.
1341(a)(2). The EPA believes that, in the context of section 401(a)(2),
five days is a reasonable interpretation of the statutory term
``immediately.'' The federal agency needs some amount of time to
process receipt of the license application and certification from the
project proponent or certifying authority, review the received
materials (which might be substantial), and then transmit notice to the
appropriate EPA office. Allowing for five days is a prompt yet
reasonable period of time to complete this process. Moreover, unlike
emergency response or notifications provisions in environmental
statutes, the provisions in CWA 401 governing certifications do not
appear to require an emergency response that might--in other contexts--
justify interpreting ``immediately'' to require a shorter period of
time to act. As provided in section 121.9(c) of the final rule, the
federal agency must provide a separate written notification of any
waiver determination; this notification need not occur prior to
transmitting the certification to EPA under section 121.12(a) of the
final rule.
This final rule affirms the EPA's interpretation that section
401(a)(2) establishes authority for the Agency to determine in its
discretion whether the discharge from a certified project may affect
the water quality in a neighboring jurisdiction. One public commenter
agreed with the EPA's interpretation and discretion concerning the
determination whether a project may affect downstream States under CWA
section 401(a)(2). Other commenters stated that even if the EPA's
discretion is supported by the language of the CWA, the unbounded scope
of the discretion is not consistent with the statute and would not
provide accountability to neighboring States, the project proponent, or
the public without additional clarification. Some commenters stated
that the EPA should provide notice to neighboring jurisdictions in
every instance, thereby allowing neighboring jurisdictions who are best
situated to understand their own water quality concerns to make a
determination as to whether there would be an effect on water quality.
Some commenters stated that the rule should set forth specific factors
that the EPA would consider in making a determination or that the EPA's
[[Page 42274]]
determination should be made in consultation with neighboring
jurisdictions. Other commenters requested that the EPA develop
regulations or guidance that would explain when the EPA would exercise
its authority to notify downstream jurisdictions.
The EPA appreciates these comments and recognizes the desire for
more prescriptive and specific provisions concerning the determination
of potential effects on neighboring jurisdictions. As a general matter,
the EPA intends to use its technical expertise from administering the
CWA over nearly fifty years to evaluate whether a certified project may
affect a neighboring jurisdiction. At this time, the EPA is not
establishing specific provisions in the final rule, but the EPA may in
the future take action to further clarify this provision via either
additional rulemaking or guidance.
The final rule modifies the EPA's 1971 certification regulations to
mirror the CWA in describing the EPA's procedural duties regarding
neighboring jurisdictions. The statute provides that, following notice
of a section 401 certification, the Administrator shall within 30 days
notify a potentially affected downstream State or authorized Tribe
``[w]henever such a discharge may affect, as determined by the
Administrator, the quality of the waters of any other State.'' 33
U.S.C. 1341(a)(2) (emphasis added). Because the EPA's duty to notify is
triggered only when the EPA has made a determination that a discharge
``may affect'' a downstream State or Tribe, the section 401(a)(2)
notification requirement is contingent. It is not a duty that applies
to the EPA with respect to all certifications, rather it applies
where--exercising its discretion--the EPA has determined that the
certified discharge ``may affect'' a neighboring jurisdiction's waters.
This provision is being finalized with minor modifications to increase
clarity regarding the EPA's discretionary determination. The Agency has
made minor, non-substantive modifications to the regulatory text at
section 121.12(b) to clarify that the 30-day review period is triggered
after the Administrator receives notice from the federal agency.
The EPA is also clarifying the section 401(a)(2) notification
process in this final rule, as such procedures were not described in
sufficient detail in the 1971 certification regulations. If, as
described above, the EPA determines that a neighboring jurisdiction may
be affected by a certified discharge from a federally licensed or
permitted project, the EPA must notify the affected jurisdiction,
certifying authority, federal agency, and project proponent within 30
days of receiving the notice that certification was issued for a
proposed project. If the Agency does not provide the required
notification within 30 days of receiving notification from a federal
agency, the federal agency may resume processing the federal license or
permit. The EPA need not wait the full 30 days, but may notify the
federal agency at any time so that it may continue processing the
license or permit.
Some public commenters requested changes to the proposed
procedures, such as different timelines for neighboring jurisdictions
to make a decision. One commenter requested that timelines be flexible
and incorporate the same factors that the federal agencies would
consider for determining the reasonable period of time. Other
commenters stated that neighboring jurisdictions should be able to
request additional information to make a determination. The EPA is
finalizing notification procedures substantively as proposed, because
they are consistent with the text of section 401(a)(2).
The final rule also provides a predictable framework for
determinations by neighboring jurisdictions. The final rule requires
that the EPA's notification to neighboring jurisdictions be in writing,
dated, and state that the neighboring jurisdiction has 60 days to
notify the EPA and the federal agency, in writing, whether or not the
discharge will violate any of its water quality requirements (as
defined at section 121.1(n) of the final rule) and whether the
jurisdiction will object to the issuance of the federal license or
permit and request a public hearing from the federal agency. The final
rule also requires that, if the neighboring jurisdiction requests a
hearing, the federal agency must forward the hearing notice to the EPA
at least 30 days before the hearing takes place. The public hearing may
be conducted in-person or remotely through telephone, online, or other
virtual platforms, as deemed appropriate by the Agency. Under the final
rule, the EPA must provide its recommendations on the federal license
or permit at the hearing. After considering the EPA's and the
neighboring jurisdiction's input, the federal agency is required to
condition the license or permit as necessary to assure that the
discharge from the certified project will comply with the neighboring
jurisdiction's water quality requirements, as the term is defined in
the final rule. Consistent with section 401(a)(2), under the final
rule, if additional conditions cannot assure that the discharge from
the certified project will comply with the neighboring jurisdiction's
water quality requirements, the federal agency cannot issue the license
or permit. The final rule further clarifies that the federal agency may
not issue the license or permit pending the conclusion of the
determination of effects on a neighboring jurisdiction.
One commenter asserted that the EPA should consider all Tribes as
neighboring jurisdictions for purposes of section 401(a)(2),
irrespective of whether they have TAS. The commenter argued that
limiting the application of the neighboring jurisdiction provision to
those Tribes with TAS would subject Tribes without TAS to a lesser
standard of review and ultimately resource protection. The Agency has
determined that only States or authorized Tribes are considered to be
``neighboring jurisdictions'' under the final rule. As explained in
section II.F.1 of this notice, section 518 of the CWA authorizes the
EPA to treat eligible Tribes with reservations ``as a State'' within
the meaning of that provision, but the CWA does not authorize the EPA
to treat all Tribes in that manner. 33 U.S.C. 1377(e).\63\
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\63\ This final rule does not change the regulations under which
federally recognized Indian Tribes obtain authorization to be
treated in the same manner as states. 40 CFR 131.4(c) expressly
states that where the EPA determines that a Tribe is eligible for
TAS for purposes of water quality standards, the Tribe is likewise
eligible to the same extent as a State for purposes of section 401
certifications. The regulations also establish criteria, application
requirements, and application processing procedures for Tribes to
obtain TAS authorization for purposes of CWA water quality
standards. See 40 CFR 131.8.
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J. The EPA's Role in Review and Advice
The final rule reaffirms the EPA's important role in providing
advice and technical assistance as requested through the certification
process. The final rule provision in section 121.16 has been modified
from the proposal to better align with the text of section 401 and the
scope of certification in this final rule.
As described in the proposal, the EPA's 1971 regulations limited
the provision of technical assistance to concerns regarding ``water
quality standards.'' To be consistent with the 1972 amendments, the
final rule replaces this term with the broader ``water quality
requirements'' which, as defined in the final rule, includes water
quality standards. The proposed rule included a provision specifically
authorizing a certifying authority, federal agency, or project
proponent to request assistance from EPA to evaluate whether a
certification condition was intended to address water quality effects
[[Page 42275]]
from the discharge. The Agency is not finalizing that provision because
it concluded that the final rule section 121.16 is broad enough to
capture all technical advice that may be requested by certifying
authorities, federal agencies, and project proponents.
Some commenters expressed concern that the proposed rule's
description of the EPA's review and advice role goes beyond the
authority provided in section 401(b). Other commenters supported the
EPA's providing assistance upon request. Other commenters asked whether
the EPA would be the ``decision maker'' or a party to litigation
challenging a certification if a project proponent, certifying
authority, or federal agency relied on the EPA's technical advice at
any point during the certification process.
Under the final rule, federal agencies, certifying authorities, and
project proponents may seek the EPA's technical expertise at any point
during the section 401 water quality certification process. The Agency
disagrees with commenters who asserted that the proposed regulation
exceeded the authority provided in section 401(b). The Agency is not
asserting independent or expanded authority in this role, but rather
will provide assistance upon request. The legislative history for the
Act provides further support for the Agency's technical role under
section 401(b). See H.R. Rep. No. 92-911, at 124 (1972) (``The
Administrator may perform services of a technical nature, such as
furnishing information or commenting on methods to comply with
limitations, standards, regulations, requirements or criteria, but only
upon request of a State, interstate agency or Federal agency.''). Under
the final rule section 121.16, a certifying authority, federal agency,
or project proponent may request assistance from the Administrator to
provide relevant information and assistance regarding the meaning of,
content of, application of, and methods to comply with water quality
requirements. This provision of the final rule is not intended to give
the EPA authority to make certification decisions, or to independently
review certifications or certification requests. Nor does this
provision authorize the EPA to interpret a State or Tribal water
quality standard or designated use in a manner that is inconsistent
with the State or Tribe's interpretation or implementation of that
standard. This provision is merely intended to implement a provision of
the statute that has been in effect since 1972. The provision of
technical advice to project proponents, certifying authorities, or
federal agencies is not a final agency action, and it does not render
the EPA a decision maker for purposes of the certification action or
subsequent action of the federal agency.
K. Enforcement
1. What is the Agency finalizing?
Under the final rule, the federal agency issuing the applicable
federal license or permit is responsible for enforcing certification
conditions that are incorporated into a federal license or permit. Once
the certifying authority acts on a certification request, the CWA does
not provide independent authority for certifying authorities to enforce
the conditions that are included in a certification under federal law.
Under the final rule, the EPA is interpreting the CWA to clarify that
this enforcement role is reserved to the federal agency issuing the
federal license or permit.
Consistent with section 401, the final rule also expands the post-
certification inspection function from the 1971 certification
regulations to all certifying authorities. Under the final rule,
certifying authorities are provided the opportunity to inspect the
facility or activity prior to initial operations, in order to determine
whether the discharge from the certified project will violate the
certification. After an inspection, the certifying authority is
required to notify the project proponent and federal agency in writing
if it determines that the discharge from the certified project will
violate the certification. The certifying authority is also required to
specify recommendations concerning measures that may be necessary to
bring the certified project into compliance with the certification.
2. Summary of Final Rule Rationale and Public Comment
The CWA expressly notes that all certification conditions ``shall
become a condition on any Federal license or permit'' subject to
section 401.33 U.S.C. 1341(d). The EPA's 1971 certification regulations
did not discuss the federal agency's responsibility to enforce
certification conditions after they are incorporated into the permit.
Under the final rule and consistent with the Act, the federal agency is
responsible for enforcing certification conditions that are
incorporated into a federal license or permit. In limited
circumstances, the EPA's 1971 certification regulations required the
Agency to provide notice of a violation and to allow six months for a
project proponent to return to compliance before pursuing further
enforcement. See 40 CFR 121.25. The EPA finds no support for that
provision in CWA section 401, and such a provision is not included in
the final rule.
a. Federal Agency Enforcement of Certification Conditions
The CWA does not provide an independent regulatory enforcement role
for certifying authorities. The role of the certifying authority is to
review the proposed project and to either grant certification, grant
certification with conditions, deny certification, or waive
certification. Once the certifying authority acts on a certification
request, section 401 does not provide an additional or ongoing role for
certifying authorities to enforce certification conditions under
federal law. Rather, federal agencies typically have enforcement
authority in accordance with the enabling statutes that provide such
agencies with permitting and licensing authority.
Many commenters agreed with the proposal that the enforcement of
section 401 conditions in a federal license or permit is the sole
responsibility of the federal agency that issues the license or permit.
A few commenters asserted that nothing in the CWA provides States with
the authority to enforce or implement conditions of a section 401
certification. Another commenter stated that if certification
conditions were enforceable independent of the federal license or
permit, there would have been no need for Congress to require
conditions to become part of the federal license or permit under
section 401(d). Another commenter requested that the final rule
unequivocally provide that section 401 certification conditions may be
enforced only after they are incorporated into the federal license or
permit and only in the same manner as the other conditions of the
federal license or permit, and that such conditions may not be
independently enforced pursuant to the CWA. As reflected in the final
rule regulatory text, the EPA generally agrees with these commenters.
Other commenters asserted that the rule should allow States and
Tribes to independently enforce their section 401 certification
conditions. Some commenters asserted that providing federal agencies
with exclusive authority to enforce section 401 certification
conditions, and limiting State enforcement, is contrary to the language
of the CWA, legislative history, and case law, citing Deschutes River
Alliance v. PGE Co., 249 F.Supp.3d 1182 (D. Or. 2017); S.D. Warren, 547
U.S. at 386. Another commenter
[[Page 42276]]
asserted that the Agency failed to cite any legal authority for
prohibiting States from enforcing their own certifications. One
commenter asserted that section 401 does not override State enforcement
authority under State law, in those States that have provided for it. A
few commenters referenced the savings clause in section 510 as
explicitly preserving State authority to enforce State laws and
requirements and suggested that reservation includes enforcement of
section 401 certifications.
The EPA has considered these comments and has concluded that some
of them reflect a misunderstanding of the proposed rule. The Agency
recognizes that some States have enacted State laws authorizing State
enforcement of certifications or certification conditions in State
court. State enforcement under State authorities may be lawful where
State authority is not preempted by federal law.\64\ Nothing in this
final rule prohibits States from exercising their enforcement authority
under enacted State laws; however, the legality of such enforcement
actions may be subject to review by a court of competent jurisdiction.
Therefore, today's rule does not implicate, let alone violate, the
reservation of state authority contained in section 510 of the Act.
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\64\ Examples of situations where State authority would be
preempted by federal law include FERC's sole authority to approve
the construction of interstate natural gas pipelines and to regulate
the transportation of natural gas for resale on these interstate
pipelines under the Natural Gas Act (5 U.S.C. 717 et seq.; see also
Schneidewind v. ANR Pipeline Co., 485 U.S. 293 (1988); Dominion
Transmission, Inc. v. Summers, 723 F.3d 238 (D.C. Cir. 2013)) and
FERC's exclusive authority to license nonfederal hydropower projects
under the Federal Power Act (16 U.S.C. 797(e), 817(1); see also
California v. Federal Energy Regulatory Comm'n, 495 U.S. 490 (1990);
First Iowa Hydro-Electric Cooperative v. FPC, 328 U.S. 152 (1946)).
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Rather, the EPA concludes that section 401 of the CWA does not
authorize States and Tribes to independently enforce section 401
certification conditions under federal law. The CWA expressly
authorizes the certifying authority to review the proposed project and
to either grant certification, grant certification with conditions,
deny certification, or waive certification. Once the certifying
authority acts on a certification request, the CWA does not authorize
certifying authorities to enforce certification conditions under
federal law; rather, a federal agency may enforce its license or
permit, including section 401 certification conditions. The EPA has
reviewed and considered legislative history from the 1972 amendments
and concludes that, on this point, the legislative history is either
silent or lacks a definitive statement of congressional intent.\65\ The
Agency agrees with the commenter who noted that if certification
conditions were enforceable independent of the federal license or
permit, there would have been no need for Congress to require
conditions to be included in the federal license or permit under
section 401(d).
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\65\ Most of the legislative history simply repeats the language
from section 401 that certification conditions ``will become a
condition on any Federal license or permit'' (H.R. Rep. No. 92-911,
at 124 (1972) or that the certification becomes an ``enforceable
condition on the Federal license or permit'' (S. Rep. No. 92-414, at
69 (1971)). However, the Senate's consideration of the Conference
report states that ``If a State establishes more stringent
limitations and/or time schedules pursuant to Section 303, they
should be set forth in a certification under Section 401. Of course,
any more stringent requirements imposed by a State pursuant to this
section shall be enforced by the Administrator.'' Sen. Consideration
of Conf. Rep. No. 92-1236 (Exhibit 1), at 171 (1972) (emphasis
added) As discussed in sections III.H, III.I, and III.J of this
notice, the text of section 401 provides specific roles for EPA as a
certifying authority, protecting waters in neighboring
jurisdictions, and providing technical assistance, but section 401
does not provide an enforcement role for EPA when it is not the
federal licensing or permitting agency.
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A few commenters asserted that without State enforcement, project
proponents will be less likely to comply with the State conditions, to
the detriment of the environment. Some commenters asserted that the
certifying authority, not the federal agency, often has the technical
knowledge, organizational structure, and staffing capacity to conduct
inspections and to enforce section 401 certification conditions. One
commenter noted that the proposal creates regulatory uncertainty if
States cannot enforce certifications and conditions. Other commenters
suggested that enforcement of section 401 certifications should be done
jointly by federal agencies and certifying authorities. One commenter
asserted that the proposed rule should be revised to allow federal
agencies and States to determine their appropriate roles in enforcing
water quality certifications. Another commenter asserted that federal
agencies are not precluded from consulting with certifying authorities
if additional substantive expertise is needed, but argued that it was
important for project proponents to know to whom they are accountable
and to eliminate the potential for any conflicting obligations.
The Agency disagrees with commenters' suggestion that water quality
will be compromised if States cannot independently enforce
certifications under federal law. The federal licensing or permitting
agency remains responsible for exercising its enforcement authority for
all provisions of the federally issued license or permit, including any
conditions incorporated from a certification. The Agency also disagrees
with commenters who requested that the EPA include authority in the
final rule for States and Tribes to independently enforce or to jointly
enforce certification conditions. The EPA cannot create via rulemaking
federal or state enforcement authority that is not expressly authorized
in the statute. However, the EPA always encourages coordination and
cooperation between certifying authorities and federal agencies,
particularly if such coordination can result in greater accountability
and compliance with certification conditions. This final rule is
intended to promote efficient permitting processes and regulatory
certainty by clarifying that section 401 does not provide an additional
or ongoing role for certifying authorities to enforce certification
conditions under federal law. This final rule provides clarification on
who holds project proponents accountable under federal law and
eliminates any confusion about which entity is responsible for
enforcing specific certification conditions in the federal license or
permit. This final rule also eliminates the possibility of inconsistent
interpretation and enforcement of the certification conditions in the
federal license or permit, increasing the likelihood that project
proponents will be able to comply with the certification conditions.
Additionally, as discussed above, the final rule does not preclude
States from pursuing enforcement actions where authorized under State
law and not preempted by other federal statutory provisions.
Importantly, the Agency agrees that federal agencies are not precluded
from consulting with certifying authorities or the EPA when exercising
their enforcement authority under CWA section 401.
The Agency received feedback during stakeholder outreach, both pre-
proposal and post-proposal, expressing concern that federal agencies
may not consistently or sufficiently enforce certification conditions
incorporated into their federal licenses or permits. The Agency has
also received feedback from other federal agencies noting the potential
challenge with enforcing certain certification conditions, particularly
those that are ill-defined, that lack clarity, or that are beyond the
scope of certification as outlined in section III.E of this notice. The
Agency anticipates the clarity provided in this final rule with respect
to the scope of a certification, the scope of the conditions
[[Page 42277]]
of a certification (see section III.E.2.c of this notice), and the
requirements for a certification with conditions (see section III.G.2.b
of this notice) will provide federal agencies with sufficient
information to enable them to effectively enforce certification
conditions.
Enforcement plays an essential role in maintaining robust
compliance with the CWA, and a critical part of any strong enforcement
program is the appropriate use of enforcement discretion. See, e.g.,
Heckler v. Chaney, 470 U.S. 821, 831 (1985). Enforcement programs
exercise discretion and make careful and informed choices about where
to conduct investigations, identifying the most serious violations and
reserving limited enforcement resources for the cases that can make the
most difference. See Sierra Club v. Whitman, 268 F.3d 898, 902-03 (9th
Cir. 2001). It is important for enforcement programs to retain their
enforcement discretion because federal agencies are in the best
position to (1) determine whether a particular action is likely to
succeed, (2) assess whether the action fits agency policies, and (3)
determine whether there are enough agency resources to undertake and
effectively prosecute the action, taking account of all other agency
constraints and priorities. See Heckler, 470 U.S. at 831.
A couple of commenters asserted that section 401 is not included in
the CWA enforcement provision, CWA section 309, and that the CWA
citizen suit provision, CWA section 505, does not authorize a citizen
suit to enforce certification conditions. One commenter noted that
although Dombeck held that a citizen suit could be used to challenge
the issuance of a permit without a certification, the court did not
make reference to the enforcement of certification conditions. A few
other commenters asserted that enforcement of section 401 certification
conditions is authorized under the CWA citizen suit provision, citing
CWA section 505, Oregon Natural Desert Ass'n v. Dombeck, 172 F.3d 1092
(9th Cir. 1998), and Deschutes River Alliance v. PGE Co., 249 F.Supp.3d
1182 (D. Or. 2017).
The EPA considered these public comments and the varying
interpretations described above and is declining to adopt a particular
interpretation in this final rule. The EPA did not propose an
interpretation of the CWA section 505 citizen suit provision and did
not solicit comment on its applicability to section 401 certifications
or certification conditions, and EPA is therefore declining to finalize
an interpretation of these provisions in this final rule.
Section 401(a)(4) and the EPA's 1971 certification regulations at
40 CFR part 121.26 through 121.28 describe circumstances in which the
certifying authority may inspect a facility that has received
certification prior to operation \66\ and may notify the federal agency
so that the agency may determine whether the facility will violate
applicable water quality requirements. 33 U.S.C. 1341(a)(4). The Agency
is updating these regulations to reflect the scope of certification
review under the modern CWA. See section 121.11 of the final rule and
section III.E of this notice. The Agency has made minor, non-
substantive modifications to section 121.11(a) from proposal to match
the language of section 121.11(b) and section 401(a)(4). Additionally,
consistent with section 401, the EPA is expanding this inspection
function to all certifying authorities and is clarifying the process by
which certifying authorities should notify the federal agency and
project proponent of any concerns arising from inspections.
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\66\ The Agency notes that operation may include implementation
of a certified project.
---------------------------------------------------------------------------
Consistent with section 401, this final rule provides certifying
authorities the opportunity to inspect the facility or activity prior
to initial operation in order to determine whether the discharge from
the certified project will violate the certification. The EPA notes
that section 401(a)(4) authorizes certifying authorities to ``review
the manner in which the facility or activity shall be operated . . . ''
for purposes of assuring that water quality requirements will not be
violated. 33 U.S.C. 1341(a)(4). The final rule uses the terms
``inspect'' and ``inspection'' because these are well understood terms
that provide additional clarity in the final rule. The Agency does not
expect these terms to change the meaning of section 401(a)(4), as
implemented through section 121.11 of the final rule. After an
inspection, the certifying authority is required to notify the project
proponent and the federal agency responsible for issuing the federal
license or permit in writing if the discharge from the certified
project will violate the certification. The certifying authority is
also required to specify recommendations concerning measures that may
be necessary to bring the certified project into compliance with the
certification.
Some commenters asserted that a certifying authority's compliance
assurance and enforcement role should not be limited to one pre-
operational inspection and asserted that the certifying authority must
be allowed to inspect the project both before and during operation in
order to ensure the project is compliant with any certification
conditions. One commenter explained that the certifying authority would
not always be able to determine compliance with all conditions of the
certification prior to operation. Another commenter asserted that it
would be unacceptable for the State (rather than the project proponent)
to identify the measures necessary to correct identified violations of
certification conditions. Another commenter stated that it is unclear
whether States have jurisdiction over post-license maintenance and
repair projects that have an impact on water quality.
The EPA disagrees with commenters who suggested that the final rule
should expand the inspection and enforcement authority provided in
section 401. As finalized, this rule is consistent with the breadth of
inspection and enforcement authority provided in section 401. This
provision in the final rule is intended to allow the certifying
authority the opportunity to inspect the facility or activity to
determine whether the discharge will violate the certification issued.
This final rule clarifies that after commencement of operations,
enforcement of certification conditions incorporated into the federal
license or permit is reserved to the federal agency that issued the
federal license or permit under federal law. Accordingly, after
commencement of operations, all inspections and enforcement will be
conducted by the federal agencies. As discussed above, federal agencies
are not precluded from consulting with certifying authorities or the
EPA when exercising their enforcement authority under section 401.
b. Reasonable Assurance vs. Will Comply
The proposed rule replaced the language from the existing
regulations requiring a ``reasonable assurance that the proposed
activity will not result in a violation of applicable water quality
standards'' with language requiring ``that a discharge from a Federally
licensed or permitted activity will comply with water quality
requirements.'' The Agency received comments expressing concerns about
this proposed change. According to these commenters, the ``will
comply'' language could result in States' including certification
conditions that are difficult or impossible to comply with, resulting
in greater non-compliance by project proponents. A few commenters
expressed concern that ``will comply'' would impose a stricter standard
on States than ``reasonable
[[Page 42278]]
assurance,'' such that they would be unable to develop conditions that
include adaptive management provisions. These commenters maintained
that the ``reasonable assurance'' standard currently allows for
adaptive future decision-making despite present uncertainties. Other
commenters stated that, in some cases, certifying authorities may be
unable to demonstrate that a proposed project will be in compliance
with water quality requirements at all times in the future, potentially
resulting in more denials. Another commenter stated that the language
in the final rule should include a ``reasonable assurance'' standard
that a discharge would meet water quality requirements, rather than the
``will comply'' standard in the proposal. Several commenters noted that
sections 401(a)(3) and (a)(4) retained the ``reasonable assurance''
language and asserted that Congress inadvertently changed the language
in (a)(1) and (d). Another commenter argued that the ambiguity
throughout 401(a) and (d) suggests that the competing provisions cannot
be harmonized based on a plain language reading of the statute alone.
The Agency disagrees with the suggestion that the ``reasonable
assurance'' language should be retained in the final rule. The
``reasonable assurance'' language in the EPA's 1971 certification
regulations was an artifact from the pre-1972 version of section 21(b),
which provided that the certifying authority would certify ``that there
is reasonable assurance . . . that such activity will be conducted in a
manner which will not violate applicable water quality standards.''
Public Law 91-224, 21(b)(1), 84 Stat. 91 (1970). The Agency
acknowledges that the inclusion of the phrase ``reasonable assurance''
in section 401(a)(3) and (a)(4) creates some ambiguity. The legislative
history does not explain why Congress retained the term in sections
401(a)(3) and (a)(4) but not in sections 401(a) and (d).
Under basic canons of statutory construction, the EPA begins with
the presumption that Congress chose its words intentionally. See, e.g.,
Stone v. INS, 514 U.S. 386, 397 (1995) (``When Congress acts to amend a
statute, we presume it intends its amendment to have real and
substantial effect.''). The Agency presumes that Congress chose to use
the phrase ``will comply'' in sections 401(a)(1) and (d), while
retaining the phrase ``reasonable assurance'' in 401(a)(3) and (a)(4).
As such, the scope under this final rule and the ``will comply''
language are consistent with the 1972 CWA amendments to section
401(a)(1) and (d), which require certifying authorities to conclude
that a discharge ``will comply'' with water quality requirements (as
defined in section 121.1(n) of this final rule).
The Agency disagrees with the suggestion that using ``will comply''
will place an impossible standard on certifying authorities. The Agency
does not intend or believe that the statutory language requires States
to ensure that a project will maintain strict compliance, in every
respect, throughout its entire existence. The inclusion of the
statutory language ``will comply'' does not require certifying
authorities to provide absolute certainty that applicants for a federal
license or permit will never violate water quality requirements.
Indeed, future compliance depends on many factors besides just facility
design and operation, and it would not be reasonable for an authority
to certify that no unknown future event could ever result in a
violation of the certification. The use of the language comparable to
``will comply'' is not uncommon in CWA regulatory programs. For
example, CWA section 402 contemplates that an NPDES permits may issue
only upon a showing that discharge ``will meet'' various enumerated
provisions. 33 U.S.C. 1342(a). This standard has not precluded States,
Tribes, or the EPA from routinely issuing NPDES permits for a variety
of discharges; nor has it resulted in NPDES permits that are impossible
for permittees to comply with. The Agency concludes that use of the
statutory language ``will comply'' in the final rule remains loyal to
the words that Congress chose when it enacted section 401. The Agency
has no theoretical or empirical basis to conclude that the language in
the final rule will materially change the way in which certifying
authorities, including the EPA, process certification requests, so long
as certifying authorities act in good faith and in accordance with CWA
section 401.
L. Modifications
1. What is the Agency finalizing?
The EPA is finalizing the rule as proposed and is removing EPA's
oversight role for modifications to an existing certification.
Additionally, the final rule does not authorize or include any
procedure for certifying authorities to modify certifications after
issuance. As discussed below, there are other established procedures
that certifying authorities may rely on to address modifications,
should the need arise.
2. Summary of Final Rule Rationale and Public Comment
a. The EPA's Role in Modifications
Section 401 does not provide an express oversight role for the EPA
with respect to the issuance or modification of section 401
certifications. The EPA's role under section 401 consists of providing
a common framework for the program through rulemaking, providing
technical assistance under section 401(b), ensuring the protection of
other States' waters under section 401(a)(2), and acting as the
certifying authority in some circumstances. However, the EPA's 1971
certification regulations provided the Agency an oversight role in the
unique context of modifications to existing water quality
certifications. 40 CFR 121.2(b). The final rule removes this oversight
role from the regulatory text, as it is inconsistent with the statute.
The Agency solicited comment generally on the appropriate scope of
the EPA's oversight role under section 401, and specifically whether
the EPA should play any role in oversight of State or Tribal
certifications or modifications, and, if so, what that role should be.
The Agency received a considerable number of public comments on this
issue, most of which supported removing the EPA's oversight role for
modifications to certifications. Some commenters agreed with the
proposal that there is no statutory basis for section 121.2(b) of the
1971 certification regulations, nor is there any indication that
Congress intended for the EPA to have an oversight role for
modifications to certifications. Another commenter suggested that the
EPA could follow the process described in the proposed rule section
121.10 to meet its obligation under section 401(a)(2) regarding
neighboring States with respect to a modification to a section 401
certification.
The EPA agrees with commenters that there is no statutory basis in
section 401 for the Agency to have an oversight role for modifications
to certifications. The Agency disagrees with the commenter who asserted
that it would be appropriate to expand the EPA's authority provided
under section 401(a)(2) to grant the Agency a more formal oversight
role. The EPA's role under section 401(a)(2) is plainly limited to (1)
notifying a State or authorized Tribe if the Agency makes a
discretionary determination that a discharge from a certified project
may affect the waters of that jurisdiction, and (2) subsequently
providing recommendations to the federal agency if the affected
neighboring jurisdiction
[[Page 42279]]
requests a hearing. See section III.I of this notice.
b. Modifications by Certifying Authorities
In light of the statute's one-year time limit for a certifying
authority to act on a section 401 certification, the EPA solicited
comment on whether and to what extent States or Tribes should be able
to modify a previously issued certification, either before or after the
reasonable period of time expires, before or after the license or
permit is issued, or to correct an aspect of a certification or its
conditions if remanded or found unlawful by a federal or State court or
administrative body.
Certain commenters were in favor of retaining the ability for
States and Tribes to modify certifications. One commenter asserted that
other CWA sections, such as sections 402 and 404, also do not
explicitly allow for modifications, yet the EPA and the Corps assume
authority to modify permits issued under those sections as long as they
follow their own processes to do so. However, many commenters suggested
that certain parameters should be applied to modifications, such as
restrictions on ``unilateral'' modifications and ``reopener'' clauses.
The EPA disagrees with commenters who argued in favor of allowing
modifications to certifications. As described throughout this final
rule preamble, section 401 certifications are unique in that they are
not subject to ongoing enforcement by certifying authorities or
oversight by the EPA, as section 402 and 404 permits may be. Indeed,
once a certification is issued, the conditions therein are incorporated
into a different document, a federal license or permit, for
implementation and enforcement. Allowing certifications to be modified
after issuance could create significant confusion and regulatory
uncertainty within those federal license and permit programs.
Some commenters argued that ``unilateral'' modifications by the
certifying authority should not be allowed, whereas other commenters
favored a broad ability for States and Tribes to modify certifications.
The commenters who disfavored unilateral modifications argued that it
would effectively void the maximum reasonable period of time of one
year and would lead to economic uncertainty for the project and
possibly lengthy and expensive litigation. One commenter stated that
unilateral modifications should be allowed in certain circumstances,
such as before the reasonable period of time has expired.
Some commenters encouraged the EPA to provide clarity on the
process by which a certification can be modified and the timeframe for
that modification, so as to help avoid future regulatory uncertainty
and litigation. A few commenters asked the EPA to clarify the process
by which federal agencies must respond to any requested revisions to
certifications beyond the reasonable period of time. As discussed in
more detail below, the final rule does not authorize certifications to
be modified after they have been issued. Section 401 does not grant
States the authority either to unilaterally modify a certification
after it is issued or to include ``reopener'' clauses in a
certification. However, other established procedures are available to
address situations that necessitate a modification after a
certification has been issued.
Some commenters distinguished between modifications made within the
reasonable period of time and those outside of that timeframe. A few of
these commenters suggested various scenarios in which a modification
should be allowed, including scenarios in which a court remands a
certification or condition, the project proponent wants to correct an
error, or the discharge in the federal license or permit changes.
Another commenter asserted that State modification of certification
conditions outside of the one-year review period should not
automatically become part of the license or permit, citing Airport
Communities Coalition v. Graves, 280 F. Supp. 2d 1207, 1217 (W.D. Wash.
2003).
The EPA has determined that section 401 does not provide authority
for a certifying authority to unilaterally modify a certification,
either through certification conditions that purport to authorize the
certifying authority to reopen the certification in the future or
through any other mechanism. The Agency also notes that the ability to
unilaterally modify a certification after issuance is unnecessary,
because circumstances that may necessitate modifications often will be
linked to other actions that have established procedures. For example,
if a federal license or permit is modified or the underlying project is
changed such that the federal license or permit requires modification,
it may trigger the requirement for a new certification, depending on
the federal agency's procedures. See, e.g., 18 CFR 5.23 (requiring
project proponents to submit a new certification request when the
project proponent submits an application to FERC to amend an existing
hydropower license or to amend a pending application for a hydropower
license). Similarly, if a court vacates or remands a certification or
condition thereof, the certifying authority may need to modify the
certification, depending on the specifics of the court's decision, and
the federal agency may need to modify the license or permit
accordingly. To reduce uncertainty, federal agencies may establish
procedures in their regulations to clarify how modifications would be
handled in these specific scenarios. For example, the EPA's existing
regulations regarding certification in the NPDES program, located at 40
CFR 124.55(b), provide procedures for modification in certain
circumstances (``If there is a change in the State law or regulation
upon which a certification is based, or if a court of competent
jurisdiction or appropriate State board or agency stays, vacates, or
remands a certification, a State which has issued a certification under
[section] 124.53 may issue a modified certification or notice of waiver
and forward it to EPA.'').
Additionally, the need to unilaterally modify a certification to
address a change in the proposed project should be unnecessary under
this final rule. As discussed in section III.C of this notice, if
certain elements of the proposed project change materially after a
certification is issued, it may be reasonable for the project proponent
to submit a new certification request. The clock stops after a
certifying authority issues a certification decision, and therefore the
Agency disagrees with the suggestion that modifications should be
allowed to occur after that point but within the reasonable period of
time.
The EPA requested comment on whether EPA should expressly prohibit
certification conditions that may create regulatory uncertainty,
including conditions that extend the effective date of a certification
beyond the reasonable period of time and conditions that authorize
certifications to be reopened. Some commenters opposed certification
conditions that enable a State or Tribe to ``reopen'' or revisit the
certification at a specific time or upon certain triggering events. A
few commenters argued that reopeners could effectively eliminate the
one-year time limit in the statute and transform section 401's grant of
State authority into an ongoing regulatory role. Another commenter,
stating that reopener clauses allowing a State or Tribe to unilaterally
modify a certification are contrary to law, noted that a regulation
prohibiting such clauses would be consistent with judicial precedent,
citing Triska v. Dept of Health & Envtl. Control, 355 SE2d 531, 533-34
(S.C. 1987). Other commenters maintained that States and Tribes should
retain their authority to
[[Page 42280]]
modify certifications whenever circumstances warrant, and that no
federal agency should have authority over conditions issued by a State
or Tribe or future modifications to those conditions. A few commenters
noted that the broad authority granted in section 401(d) of the CWA
also provides authority for a State or Tribe to include a ``reopener''
clause to ensure that their waters are protected, especially given the
long timeframes for some projects.
The EPA has considered these comments and concludes that reopener
clauses are inconsistent with section 401. The final rule does not
include an explicit prohibition on reopener clauses because the EPA has
concluded that such conditions are already proscribed by section
121.6(e) of the final rule. By including a reopener condition in a
certification, the certifying authority intends to take an action to
reconsider or otherwise modify a previously issued certification at
some unknown point in the future. As described in section III.F above,
the reasonable period of time to act on a certification request begins
when a certifying authority receives the request, and ends when the
certifying authority takes action to grant, grant with conditions,
deny, or waive. The reasonable period of time does not continue to run
after a certification decision is issued. A reopener condition, if
allowed under this final rule, would effectively extend the established
reasonable period of time into the future, potentially indefinitely.
The Agency acknowledges that projects may change after a certification
is issued; but, as discussed above, there are other procedures in this
final rule and in other federal agency regulations that can address
project changes that would necessitate a new or modified certification
or federal license or permit. Reopener conditions are not authorized
under this final rule because such actions by the certifying authority
would modify the reasonable period of time, contrary to section
121.6(e) of the final rule.
As discussed above, section 401 does not provide certifying
authorities with the authority to modify certifications after they are
issued. The Agency disagrees with commenters who assert that section
401(d) provides certifying authorities with authority to include
reopener clauses as a condition on a federal license or permit. As a
general matter, administrative agencies possess the inherent authority
to reconsider prior decisions; \67\ however, section 401 provides
express statutory language (e.g., specifying the time period in which a
certifying authority must act on a certification request or waive its
right to act; requiring certification conditions to be incorporated
into a separate federal permit) that displaces the general principle,
and thus Congress has precluded the certifying authority from
reconsidering or modifying a certification. For the reasons explained
above, unilateral modifications, including certification conditions
that would reopen the certification in the future, are not authorized
in section 401.
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\67\ See e.g., Motor Vehicle Mfrs. Ass'n v. State Farm Mut.
Auto. Ins. Co., 463 U.S. 29, 42 (1983); FCC v. Fox Television
Studios, 556 U.S. 502, 514-15 (2009); Belville Mining Co. v. United
States, 999 F.2d 989, 997 (6th Cir. 1993).
---------------------------------------------------------------------------
The Agency also disagrees with commenters that assert that the
federal agency should not have authority over certification conditions
or modifications. As discussed in section III.G.2.b of this notice,
consistent with section 401(d), certification conditions that meet the
requirements of final rule section 121.7(d) shall be incorporated into
the federal license or permit. Accordingly, the federal agency is the
appropriate party to address any modifications to the license or
permit, including those certification conditions incorporated into the
license or permit.
M. General Licenses and Permits
1. What is the Agency finalizing?
In response to comments received, the Agency is finalizing several
provisions specific for certifications for the issuance of general
licenses or permits. Section 121.5(c) of the final rule specifically
defines elements of a ``certification request'' that must be submitted
for the issuance of general licenses or permits. The Agency is also
including additional provisions in section 121.7 of the final rule to
address certification conditions and denials for general licenses and
permits.
This final rule preamble also reaffirms that a federal agency
seeking certification for a general license or permit must comply with
all provisions of this final rule, including the pre-filing meeting
request requirement in section 121.4. This final rule preamble also
clarifies a federal agency's obligation under section 401(a)(2) to
notify the EPA when it receives certification for a general license or
permit.
2. Summary of Final Rule Rationale and Public Comment
The majority of certifications are issued for projects that require
an individual federal license or permit. However, certifications are
also required prior to the issuance or establishment of a general
license or permit. General licenses and permits are vital to the
effective operation of several federal programs such as the CWA section
402 and section 404 programs, producing efficiencies that save time and
money for project proponents and regulators. General licenses and
permits provide streamlined procedures for project proponents by
authorizing categories of discharges or simplified review procedures
when the discharges comply with specified requirements. Federal
licensing and permitting agencies must obtain a section 401
certification when issuing general licenses or permits, and the final
rule accounts for the potential variation of future projects or
activities that may be covered under the general license or permit. The
final rule provides slightly modified requirements to account for
differences between individual and general licenses and permits in the
water quality certification context.
a. Certification Request for a General License or Permit
The Agency took comment on whether federal agencies seeking
certification for a general license or permit should be subject to the
same or different ``certification request'' submittal requirements as
other project proponents seeking certification for an individual
license or permit. A few commenters stated that federal agencies should
follow the same procedures as other project proponents for submitting
certification requests. Another commenter encouraged the EPA to revise
the elements of a certification request to provide flexibility for
general licenses or permits, because the type, means, and methods used
to monitor the future discharges that may be authorized in the future
may not be known. The final rule includes specific requirements for
certification requests for the issuance of general licenses or permits.
Where a federal agency is seeking to issue a general license or
permit, the EPA expects the federal agency to follow the requirements
of section 121.5(c) of the final rule. Section 121.5(c) of the final
rule includes a list of documents and information required for
``certification request for issuance of a general license or permit,''
similar to the list that was included in the proposed rule as an
alternative approach:
1. Identify the project proponent(s) and a point of contact;
2. identify the proposed categories of activities to be
authorized by the general license or permit for which certification
is requested;
[[Page 42281]]
3. include the draft or proposed general license or permit;
4. estimate the number of discharges expected to be authorized
by the proposed general license or permit each year;
5. include documentation that a pre-filing meeting request was
submitted to the certifying authority at least 30 days prior to
submitting the certification request;
6. contain the following statement: `The project proponent
hereby certifies that all information contained herein is true,
accurate, and complete to the best of my knowledge and belief'; and
7. contain the following statement: `The project proponent
hereby requests that the certifying authority review and take action
on this CWA 401 certification request within the applicable
reasonable period of time.'
The list in section 121.5(c) is similar to the list in section
121.5(b) of the final rule, including the two new requirements (a
statement that all information contained in the request is true,
accurate, and complete to the best of the project proponent's
knowledge, and documentation that a pre-filing meeting request was
submitted to the certifying authority at least 30 days prior to
submitting the certification request), but with some differences to
account for the distinctions between issuing a general license or
permit and issuing a license or permit for a specific project, with
respect to the available information at the time of certification. The
Agency has made these changes regarding how general licenses and
permits are handled under this final rule to improve clarity and for
consistent administration of section 401 for all general licenses and
permits.
b. Information Requirements for General License or Permit Certification
Conditions and Denials
Consistent with commenters and other federal agency concerns
regarding the need to account for the differences between individual
and general license and permits, the final rule contains additional
language in sections 121.7(d) and 121.7(e) to ensure that the rule can
be consistently and appropriately applied to certifications issued for
the issuance of general licenses and permits. Section 121.7(d)(1) of
the final rule provides the information requirements for certification
conditions that apply when a project proponent has requested
certification for an individual license or permit that may result in a
specific discharge or set of discharges into waters of the United
States. See section III.C of this notice. The final rule includes a new
section 121.7(d)(2), which provides slightly different information
requirements for certification conditions for issuance of general
licenses and permits. Certifications for issuance of general permits
and licenses must include the information requirements in section
121.7(d)(2) of the final rule.
For each certification condition on issuance of a general license
or permit, section 121.7(d)(2) of the final rule requires:
(i) A statement explaining why the condition is necessary to assure
that any discharge authorized under the general license or permit will
comply with water quality requirements; and
(ii) A citation to federal, state, or tribal law that authorizes
the condition.
Similarly, section 121.7(e)(1) of the final rule provides the
information requirements for certification denials that apply when a
project proponent has requested certification for an individual license
or permit that may result in a specific discharge or set of discharges
into waters of the United States. See section III.G.2.c of this notice.
The final rule also includes a new section 121.7(e)(2), which provides
slightly different information requirements for denials for general
licenses and permits. For each certification denial for issuance of a
general license or permit, section 121.7(e)(2) of the final rule
requires:
(i) The specific water quality requirements with which
discharges that could be authorized by the general license or permit
will not comply;
(ii) A statement explaining why discharges that could be
authorized by the general license or permit will not comply with the
identified water quality requirements; and
(iii) If the denial is due to insufficient information, the
denial must describe the types of water quality data or information,
if any, that would be needed to assure that the range of discharges
from potential projects will comply with water quality requirements.
Although these are both new provisions in the final rule, the
substance of these information requirements is very similar to the
information requirements for certification conditions and denials for
individual licenses and permits that were included in the proposed
rule. The EPA made only slight changes to these proposed provisions to
facilitate their application in the general licensing and permitting
context. Certification denials for a general license or permit must
contain the information in section 121.7(e)(2) of the final rule.
c. Other Provisions of the Final Rule Also Apply to Certifications for
General Licenses or Permits
As mentioned in sections III.B and III.I of this notice, the EPA
expects that all of the procedural and substantive requirements in this
final rule will apply to entities seeking certification for a general
license or permit. As discussed in section III.I of this notice,
section 401(a)(2) provides a mechanism for the EPA to notify a State or
an authorized Tribe where the EPA has determined that the discharge
from a certified project may affect the quality of that State's or
Tribe's waters. The Act requires federal agencies to notify the EPA of
certifications and associated federal licensing or permitting
applications. 33 U.S.C. 1341(a)(2). This statutory obligation extends
to any circumstance where a federal agency receives a certification,
including where the federal agency receives certification for issuance
of a general license or permit.
The EPA is finalizing a pre-filing meeting requirement that
requires all project proponents, including federal agencies when they
seek certification for general licenses or permits, to request a
meeting with a certifying authority at least 30 days prior to
submitting a certification request, as discussed in section III.B of
this notice.
IV. Economic Analysis
Pursuant to Executive Orders 12866 and 13563, the Agency conducted
an economic analysis to better understand the potential effects of this
final rule on certifying authorities and project proponents. While the
economic analysis is informative in the rulemaking context, the EPA is
not relying on the analysis as a basis for this final rule. See, e.g.,
Nat'l. Assn. of Homebuilders v. EPA, 682 F.3d 1032, 1039-40 (D.C. Cir.
2012). The analysis is contained and described more fully in the
document Economic Analysis for the Clean Water Act Section 401
Certification Rule (``the Economic Analysis''). A copy of this document
is available in the docket for this action.
Section 401 certification decisions have varying effects on
certifying authorities and project proponents. The Agency has limited
data regarding the number of certification requests submitted and the
outcome of those certifications. To make the best use of limited
information to assess the potential impacts of this final rule on
project proponents and certifying authorities, the Economic Analysis
provides a qualitative analysis of the section 401 certification
process under the 1971 certification regulations and under the final
rule. In particular, the Economic Analysis focuses on the revisions to
the time period for review, the scope of review, and the pre-filing
meeting request requirement.
This final rule will help certifying authorities, federal agencies,
and project
[[Page 42282]]
proponents understand what is required and expected during the section
401 certification process, thereby increasing transparency and reducing
regulatory uncertainty. The EPA concludes that improved clarity
concerning the time period for review and the scope of review may make
the certification process more efficient for project proponents and
certifying authorities.
V. Statutory and Executive Order Reviews
Additional information about these statutes and Executive Orders
can be found at https://www.epa.gov/laws-regulations/laws-and-executive-orders.
A. Executive Order 12866: Regulatory Planning and Review; Executive
Order 13563: Improving Regulation and Regulatory Review
This action is a significant regulatory action that was submitted
to the Office of Management and Budget (OMB) for review. Any changes
made in response to OMB recommendations have been documented in the
docket for this action. In addition, the Agency prepared an analysis of
potential costs and benefits associated with this action. This analysis
is contained in the Economic Analysis, which is available in the docket
and is briefly summarized in Section IV of this notice. While economic
analyses are informative in the rulemaking context, the Agency is not
relying on the economic analysis performed pursuant to Executive Orders
12866 and 13563 and related procedural requirements as a basis for this
final rule.
B. Executive Order 13771: Reducing Regulation and Controlling
Regulatory Costs
Pursuant to Executive Order 13771 (82 FR 9339, February 3, 2017),
this final rule is a deregulatory action. See the Economic Analysis for
further discussion about the potential effects of this rule.
C. Paperwork Reduction Act
The information collection activities in this final rule have been
submitted for approval to the Office of Management and Budget (OMB)
under the Paperwork Reduction Act (PRA). The Information Collection
Request (ICR) document that the EPA prepared has been assigned EPA ICR
number 2603.05 (OMB Control No. 2040-0295). You can find a copy of the
ICR in the docket for this rule, and it is briefly summarized here. The
information collection requirements are not enforceable until they are
approved by OMB.
The information collected under this ICR is used by certifying
authorities for reviewing proposed projects for potential water quality
impacts from discharges from an activity that requires a federal
license or permit, and by the EPA to evaluate potential effects on
downstream or neighboring jurisdictions. Except for when the EPA is the
certifying authority, information collected under section 401 is not
directly collected by or managed by the EPA. The primary collection of
information is performed by States and Tribes acting as certifying
authorities. Information collected directly by the EPA under section
401 in support of the section 402 program is already captured under
existing EPA ICR No. 0229.22 (OMB Control No. 2040-0295).
The final rule clarifies the information that project proponents
must provide to request a section 401 certification and introduces a
pre-filing meeting request requirement for all project proponents. The
final rule also removes information requirements related to
certification modifications and section 401(a)(2) procedures for
neighboring jurisdictions, and provides additional transparency by
identifying, unambiguously, information necessary to support
certification actions. The EPA expects this final rule will provide
greater clarity on section 401 requirements, reduce the overall
preparation time spent by a project proponent on certification
requests, and reduce the review time for certifying authorities.
In the interest of transparency and public understanding, the EPA
has provided here relevant portions of the burden assessment of the
final rule. More information about the burden assessment can be found
in the supporting statement for the ICR.
Respondents/affected entities: Project proponents, State and Tribal
reviewers (certifying authorities).
Respondent's obligation to respond: required to obtain 401
certification (33 U.S.C. 1341(a)(1)).
Estimated number of respondents: 97,119 per year.
Frequency of response: one per federal application.
Total estimated burden: 931,000 hours (per year). Burden is defined
at 5 CFR 1320.3(b).
Total estimated cost: $58 Million (per year), includes $8 Million
annualized capital or operation & maintenance costs.
The final rule results in an estimated marginal burden decrease of
136,000 hours. This marginal decrease is associated with the reduction
of information requirements in the final rule and a projected decrease
in certifying authority review times associated with the clearer scope
of certification in section 121.3 of the final rule. A full description
of the analysis is available in the supporting statement accompanying
this information collection request.
An agency may not conduct or sponsor, and a person is not required
to respond to, a collection of information unless it displays a
currently valid OMB control number. The OMB control numbers for the
EPA's regulations in 40 CFR are listed in 40 CFR part 9. When OMB
approves this ICR, the Agency will announce that approval in the
Federal Register and publish a technical amendment to 40 CFR part 9 to
display the OMB control number for the approved information collection
activities contained in this final rule.
D. Regulatory Flexibility Act
I certify that this action will not have a significant economic
impact on a substantial number of small entities under the Regulatory
Flexibility Act (RFA). In making this determination, the impact of
concern is any significant adverse economic impact on small entities.
An agency may certify that a rule will not have a significant economic
impact on a substantial number of small entities if the rule relieves
regulatory burden, has no net burden, or otherwise has a positive
economic effect on the small entities subject to the rule.
Under section 401, a federal agency may not issue a license or
permit to conduct any activity that may result in any discharge into
waters of the United States, unless the State or authorized Tribe where
the discharge would originate (or the EPA, in certain circumstances
described above) either (1) issues a section 401 water quality
certification finding compliance with applicable water quality
requirements or (2) waives certification. Under section 401 and this
final rule, the applicant for the federal license or permit (the
project proponent) is required to request and obtain a water quality
certification. This action provides project proponents with greater
clarity and regulatory certainty on the substantive and procedural
requirements for obtaining a water quality certification. This action
also provides procedural clarity to certifying authorities and Federal
licensing and permitting agencies. The Agency anticipates this action
will result in faster, more efficient and more transparent decision-
making by certifying authorities. As discussed in the Economic Analysis
accompanying this final rule, the Agency concludes
[[Page 42283]]
that improved clarity concerning the scope and reasonable period of
time for certification review may make the certification process more
efficient for project proponents, including small entities, and does
not expect the cost of the rule to result in a significant economic
impact on a substantial number of small entities.
E. Unfunded Mandates Reform Act
This action does not contain an unfunded mandate of $100 million or
more as described in the Unfunded Mandates Reform Act of 1995 (UMRA), 2
U.S.C. 1531-1538, and does not contain any regulatory requirements that
significantly or uniquely affect small governments. While this action
creates enforceable duties for the private sector, the cost does not
exceed $100 million or more. This action does not create enforceable
duties for State and Tribal governments. See Section IV of this notice
for further discussion on the Economic Analysis.
F. Executive Order 13132: Federalism
Executive Order 13132, titled ``Federalism'' (64 FR 43255, August
10, 1999), requires federal agencies to develop an accountable process
to ensure ``meaningful and timely input by state and local officials in
the development of regulatory policies that have federalism
implications.'' The Executive Order defines ``policies that have
federalism implications'' to include regulations that have
``substantial direct effects on the states, on the relationship between
the national government and the states, or on the distribution of power
and responsibilities among the various levels of government.'' The
Agency concludes that the final rule may have federalism implications
because it may impact how some States have historically implemented
water quality certification programs. This final rule makes the EPA's
CWA section 401 regulation consistent with the statutory language, and
acknowledges that States may modify their practices to be consistent
with this regulation. The EPA provides the following federalism summary
impact statement.
The Agency consulted with State and local government officials, or
their representative national organizations, during the development of
this action as required under the terms of Executive Order 13132 to
permit them to have meaningful and timely input into the proposed
rule's development. On April 24, 2019, the Agency initiated a 30-day
Federalism consultation period prior to proposing this rule to allow
for meaningful input from State and local governments. The kickoff
Federalism consultation meeting occurred on April 23, 2019; attendees
included representatives of intergovernmental associations and other
associations representing State and local governments. Organizations in
attendance included: National Governors Association, U.S. Conference of
Mayors, National Conference of State Legislatures, the Environmental
Council of the States, National League of Cities, Council of State
Governments, National Association of Counties, National Association of
Towns and Townships, Association of Clean Water Administrators, Western
States Water Council, Conference of Western Attorneys General,
Association of State Wetland Managers, and Western Governors'
Association. Additionally, one in-person meeting was held with the
National Governors Association on May 7, 2019. The Agency also held an
informational webinar for States and Tribes on May 8, 2019. At these
webinars and meetings, the EPA provided a presentation and sought input
on areas of section 401 that may require clarification, including
timeframe, scope of certification review, and coordination among
project proponents, certifying authorities, and federal licensing or
permitting agencies. See section II.C of this notice for more
information on outreach with States prior to Federalism consultation.
Letters and webinar attendee feedback received by the Agency before
and during Federalism consultation may be found on the pre-proposal
recommendations docket (Docket ID No. EPA-HQ-OW-2018-0855, available at
https://www.regulations.gov/docket?D=EPA-HQ-OW-2018-0855). These
webinars, meetings, and letters provided a wide and diverse range of
interests, positions, and recommendations to the Agency. Following
publication of the proposed rule, the Agency held two additional in-
person meetings with State representatives to answer clarifying
questions about the proposal and to discuss implementation
considerations. The Agency has prepared a report summarizing its
consultation and additional outreach to state and local governments and
the results of this outreach. A copy of the final report is available
in the docket (Docket ID No. EPA-HQ-OW-2019-0405) for this final rule.
Correspondence received from State and local governments and their
representative national associations during the public comment period
can be found in Docket ID No. EPA-HQ-OW-2019-0405, available at https://www.regulations.gov/docket?D=EPA-HQ-OW-2019-0405.
During Federalism consultation and engagement efforts and in the
State and local government comments on the proposed rule, many States
expressed concern that the proposed rule would adversely impact State
authority and States' ability to protect state waters. Commenters
raised several concerns, including concerns about the federal agency
review role in the certification process; constraints on the
certification review process, including the scope, timeframe, and
information to start the statutory review clock; information
requirements to act on a certification request; State enforcement role
in certification; and the potential impact on existing State
regulations and law.
The Agency acknowledges that the final rule may change how States
administer the section 401 program, but has made adjustments in the
final rule to account for many of the concerns raised by states. The
Agency has made certain changes in response to comments, including
comments from States and local governments. The final rule preserves
the robust State role in the certification process in a manner
consistent with the CWA. As discussed in section III.G of this notice,
the final rule does not provide federal agencies with a role in
substantively reviewing State certification decisions. Additionally,
the final rule expands the pre-filing meeting requirement to all
project proponents and allows States, in their discretion, to meet with
project proponents to discuss information needs and concerns prior to
starting the reasonable period of time. The final rule notice also
clarifies that certifying authorities may request additional
information during the reasonable period of time, and the final rule
preserves certifying authorities' ability to deny certification
requests if they have inadequate information to determine whether a
discharge complies with water quality requirements. The final rule
definition of ``water quality requirements'' no longer limits other
appropriate requirements of State law to requirements that are EPA-
approved; rather, the definition captures State or Tribal regulatory
requirements for point source discharges into waters of the United
States. The final rule also removes the requirement for certifying
authorities to provide a statement of whether and to what extent a less
stringent condition could satisfy applicable water quality
requirements.
As required by Section 8(a) of Executive Order 13132, the EPA
included a certification from its Federalism Official stating that the
EPA
[[Page 42284]]
had met the Executive Order's requirements in a meaningful and timely
manner. A copy of this certification is included in the official record
for this final action.
G. Executive Order 13175: Consultation and Coordination With Indian
Tribal Governments
Executive Order 13175, entitled ``Consultation and Coordination
with Indian Tribal Governments'' (65 FR 67249, Nov. 9, 2000), requires
agencies to develop an accountable process to ensure ``meaningful and
timely input by tribal officials in the development of regulatory
policies that have tribal implications.'' This action has Tribal
implications. However, it will neither impose substantial direct
compliance costs on federally recognized Tribal governments nor preempt
Tribal law.
During Tribal consultation and engagement efforts and in Tribal
comments on the proposed rule, many Tribes expressed concern that the
proposed rule would adversely impact Tribal waters. The final rule may
affect how Tribes with treatment in a similar manner as a state (TAS)
for CWA section 401 administer their section 401 program, but will not
have an administrative impact on Tribes for whom the EPA certifies on
their behalf. The Agency has made changes in the final rule in response
to comments, including comments from Tribes. The final rule maintains
the ability for Tribes to provide input in the certification process
and preserves the robust Tribal role in the certification process in a
manner consistent with the CWA.
The Agency consulted with Tribal officials at the beginning of rule
development to permit meaningful and timely input, consistent with the
EPA Policy on Consultation and Coordination with Indian Tribes. The EPA
initiated a Tribal consultation and coordination process before
proposing this rule by sending a ``Notification of Consultation and
Coordination'' letter dated April 22, 2019, to all 573 Federally
recognized Tribes. The letter invited Tribal leaders and designated
consultation representatives to participate in the Tribal consultation
and coordination process. The Agency held two identical webinars on
this action for Tribal representatives on May 7 and May 15, 2019. The
Agency also presented on this action at the Region 9 Regional Tribal
Operations Committee Spring meeting on May 22, 2019. Additionally,
Tribes were invited to two webinars for States, Tribes, and local
governments on April 17, 2019 and May 8, 2019. Tribes and Tribal
organizations sent 15 pre-proposal recommendation letters to the Agency
as part of the consultation process. All Tribal and Tribal organization
letters and webinar feedback may be found on the pre-proposal
recommendations docket (Docket ID No. EPA-HQ-OW-2018-0855). The Agency
met with four Tribes at the staff-level.
The Agency continued engagement with Tribes after the end of the
formal consultation period. Following the publication of the proposed
rule, the Agency held two in-person meetings with Tribal
representatives to answer clarifying questions about the proposal, and
to discuss implementation considerations and Tribal interest in the
section 401 water quality certification process. In addition, the
Agency continued to meet with individual Tribes requesting consultation
or engagement following publication of the proposed rule, holding
staff-level meetings with 11 Tribes and leader-to-leader level meetings
with two Tribes post-proposal. In total, the Agency met with 14
individual Tribes requesting consultation, holding leader-to-leader
level consultation meetings with two individual Tribes and staff-level
meetings with 13 individual Tribes (the Agency met with some Tribes
more than once). The Agency has prepared a report summarizing the
consultation and further engagement with Tribal nations. This report,
Summary Report of Tribal Consultation and Engagement for the Clean
Water Act Section 401 Certification Rule (Docket ID No. EPA-HQ-OW-2019-
0405), is available in the docket for this final rule.
As required by section 7(a), the EPA's Tribal Consultation Official
has certified that the requirements of the executive order have been
met in a meaningful and timely manner. A copy of the certification is
included in the docket for this action.
H. Executive Order 13045: Protection of Children From Environmental
Health and Safety Risks
This action is not subject to Executive Order 13045 (62 FR 19885,
April 23, 1997) because the environmental health or safety risks
addressed by this action do not present a disproportionate risk to
children.
I. Executive Order 13211: Actions Concerning Regulations That
Significantly Affect Energy Supply, Distribution, or Use
This action is not a ``significant energy action'' as defined in
Executive Order 13211 (66 FR 28355, May 22, 2001), because it is not
likely to have a significant adverse effect on the supply,
distribution, or use of energy.
J. National Technology Transfer and Advancement Act
This action is not subject to the National Technology Transfer and
Advancement Act of 1995 because the rule does not involve technical
standards.
K. Executive Order 12898: Federal Actions To Address Environmental
Justice in Minority Populations and Low-Income Populations
This action is not subject to Executive Order 12898 (59 FR 7629,
February 11, 1994) because there is no significant evidence of
disproportionately high and adverse human health or environmental
effects on minority populations, low income populations, and/or
indigenous populations, as specified in Executive Order 12898.
L. Congressional Review Act
This action is subject to the CRA, and the EPA will submit a rule
report to each House of the Congress and to the Comptroller General of
the United States. This action is not a ``major rule'' as defined by 5
U.S.C. 804(2).
List of Subjects in 40 CFR Part 121
Environmental protection, Administrative practice and procedure,
Intergovernmental relations, Water pollution control.
Andrew Wheeler,
Administrator.
For the reasons set forth in the preamble, EPA is revising 40 CFR
part 121 as follows:
PART 121--STATE CERTIFICATION OF ACTIVITIES REQUIRING A FEDERAL
LICENSE OR PERMIT
Sec.
Subpart A--General
121.1 Definitions.
Subpart B--Certification Procedures
121.2 When certification is required.
121.3 Scope of certification.
121.4 Pre-filing meeting request.
121.5 Certification request.
121.6 Establishing the reasonable period of time.
121.7 Action on a certification request.
121.8 Effect of denial of certification.
121.9 Waiver.
121.10 Incorporation of certification conditions into the license or
permit.
121.11 Enforcement and compliance of certification conditions.
Subpart C--Other Jurisdictions
121.12 Determination of effects on neighboring jurisdictions.
[[Page 42285]]
Subpart D--Certification by the Administrator
121.13 When the Administrator certifies.
121.14 Request for additional information.
121.15 Notice and hearing.
Subpart E--Consultations
121.16 Review and advice.
Authority: 33 U.S.C. 1251 et seq.
Subpart A--General
Sec. 121.1 Definitions.
(a) Administrator means the Administrator of the Environmental
Protection Agency or an authorized representative.
(b) Certification means a water quality certification issued in
accordance with Clean Water Act section 401 and this part.
(c) Certification request means a written, signed, and dated
communication that satisfies the requirements of Sec. 121.5(b) or (c).
(d) Certified project means a proposed project that has received a
certification or for which the certification requirement has been
waived.
(e) Certifying authority means the agency responsible for
certifying compliance with applicable water quality requirements in
accordance with Clean Water Act section 401.
(f) Discharge for purposes of this part means a discharge from a
point source into a water of the United States.
(g) Federal agency means any agency of the Federal Government to
which application is made for a license or permit that is subject to
Clean Water Act section 401.
(h) License or permit means any license or permit granted by an
agency of the Federal Government to conduct any activity which may
result in a discharge.
(i) Neighboring jurisdiction means any other state or authorized
tribe whose water quality the Administrator determines may be affected
by a discharge for which a certification is granted pursuant to Clean
Water Act section 401 and this part.
(j) Project proponent means the applicant for a license or permit
or the entity seeking certification.
(k) Proposed project means the activity or facility for which the
project proponent has applied for a license or permit.
(l) Reasonable period of time means the time period during which a
certifying authority may act on a certification request, established in
accordance with Sec. 121.6 of this part.
(m) Receipt means the date that a certification request is
documented as received by a certifying authority in accordance with
applicable submission procedures.
(n) Water quality requirements means applicable provisions of
Sec. Sec. 301, 302, 303, 306, and 307 of the Clean Water Act, and
state or tribal regulatory requirements for point source discharges
into waters of the United States.
Subpart B--Certification Procedures
Sec. 121.2 When certification is required.
Certification is required for any license or permit that authorizes
an activity that may result in a discharge.
Sec. 121.3 Scope of certification.
The scope of a Clean Water Act section 401 certification is limited
to assuring that a discharge from a Federally licensed or permitted
activity will comply with water quality requirements.
Sec. 121.4 Pre-filing meeting request.
(a) At least 30 days prior to submitting a certification request,
the project proponent shall request a pre-filing meeting with the
certifying authority.
(b) The certifying authority is not obligated to grant or respond
to the pre-filing meeting request.
(c) If the certifying authority grants the pre-filing meeting
request, the project proponent and the certifying authority are
encouraged to discuss the nature of the proposed project and potential
water quality effects. The project proponent is encouraged to provide a
list of other required state, interstate, tribal, territorial, and
federal authorizations and to describe the anticipated timeline for
construction and operation.
(d) After receiving the pre-filing meeting request, the certifying
authority is encouraged to contact the Federal agency and to identify
points of contact to facilitate information sharing between the
certifying authority and Federal agency throughout the certification
process.
Sec. 121.5 Certification request.
(a) A certification request shall be submitted to the certifying
authority and to the Federal agency concurrently.
(b) A certification request for an individual license or permit
shall:
(1) Identify the project proponent(s) and a point of contact;
(2) Identify the proposed project;
(3) Identify the applicable federal license or permit;
(4) Identify the location and nature of any potential discharge
that may result from the proposed project and the location of receiving
waters;
(5) Include a description of any methods and means proposed to
monitor the discharge and the equipment or measures planned to treat,
control, or manage the discharge;
(6) Include a list of all other federal, interstate, tribal, state,
territorial, or local agency authorizations required for the proposed
project, including all approvals or denials already received;
(7) Include documentation that a pre-filing meeting request was
submitted to the certifying authority at least 30 days prior to
submitting the certification request;
(8) Contain the following statement: `The project proponent hereby
certifies that all information contained herein is true, accurate, and
complete to the best of my knowledge and belief'; and
(9) Contain the following statement: `The project proponent hereby
requests that the certifying authority review and take action on this
CWA 401 certification request within the applicable reasonable period
of time.'
(c) A certification request for issuance of a general license or
permit shall:
(1) Identify the project proponent(s) and a point of contact;
(2) Identify the proposed categories of activities to be authorized
by the general license or permit for which certification is requested;
(3) Include the draft or proposed general license or permit;
(4) Estimate the number of discharges expected to be authorized by
the proposed general license or permit each year;
(5) Include documentation that a pre-filing meeting request was
submitted to the certifying authority at least 30 days prior to
submitting the certification request;
(6) Contain the following statement: `The project proponent hereby
certifies that all information contained herein is true, accurate, and
complete to the best of my knowledge and belief '; and
(7) Contain the following statement: `The project proponent hereby
requests that the certifying authority review and take action on this
CWA 401 certification request within the applicable reasonable period
of time.'
Sec. 121.6 Establishing the reasonable period of time.
(a) The Federal agency shall establish the reasonable period of
time either categorically or on a case-by-case basis. In either event,
the reasonable period of time shall not exceed one year from receipt.
(b) Within 15 days of receiving notice of the certification request
from the project proponent, the Federal agency shall provide, in
writing, the following information to the certifying authority:
[[Page 42286]]
(1) The date of receipt;
(2) The applicable reasonable period of time to act on the
certification request; and
(3) The date upon which waiver will occur if the certifying
authority fails or refuses to act on the certification request.
(c) In establishing the reasonable period of time, the Federal
agency shall consider:
(1) The complexity of the proposed project;
(2) The nature of any potential discharge; and
(3) The potential need for additional study or evaluation of water
quality effects from the discharge.
(d) The Federal agency may extend the reasonable period of time at
the request of a certifying authority or a project proponent, but in no
case shall the reasonable period of time exceed one year from receipt.
(1) Any request by a certifying authority or project proponent to
the Federal agency to extend the reasonable period of time shall be in
writing.
(2) If the Federal agency agrees to extend the reasonable period of
time, the Federal agency shall notify the certifying authority and
project proponent in writing.
(e) The certifying authority is not authorized to request the
project proponent to withdraw a certification request and is not
authorized to take any action to extend the reasonable period of time
other than specified in Sec. 121.6(d).
Sec. 121.7 Action on a certification request.
(a) Any action by the certifying authority to grant, grant with
conditions, or deny a certification request must be within the scope of
certification, must be completed within the reasonable period of time,
and must otherwise be in accordance with section 401 of the Clean Water
Act. Alternatively, a certifying authority may expressly waive
certification.
(b) If the certifying authority determines that a discharge from a
proposed project will comply with water quality requirements, it may
issue or waive certification. If the certifying authority cannot
certify that the discharge from a proposed project will comply with
water quality requirements, it may deny or waive certification.
(c) Any grant of certification shall be in writing and shall
include a statement that the discharge from the proposed project will
comply with water quality requirements.
(d) Any grant of certification with conditions shall be in writing
and shall for each condition include, at a minimum:
(1) For certification conditions on an individual license or
permit,
(i) A statement explaining why the condition is necessary to assure
that the discharge from the proposed project will comply with water
quality requirements; and
(ii) A citation to federal, state, or tribal law that authorizes
the condition.
(2) For certification conditions on issuance of a general license
or permit,
(i) A statement explaining why the condition is necessary to assure
that any discharge authorized under the general license or permit will
comply with water quality requirements; and
(ii) A citation to federal, state, or tribal law that authorizes
the condition.
(e) Any denial of certification shall be in writing and shall
include:
(1) For denial of certification for an individual license or
permit,
(i) The specific water quality requirements with which the
discharge will not comply;
(ii) A statement explaining why the discharge will not comply with
the identified water quality requirements; and
(iii) If the denial is due to insufficient information, the denial
must describe the specific water quality data or information, if any,
that would be needed to assure that the discharge from the proposed
project will comply with water quality requirements.
(2) For denial of certification for issuance of a general license
or permit,
(i) The specific water quality requirements with which discharges
that could be authorized by the general license or permit will not
comply;
(ii) A statement explaining why discharges that could be authorized
by the general license or permit will not comply with the identified
water quality requirements; and
(iii) If the denial is due to insufficient information, the denial
must describe the types of water quality data or information, if any,
that would be needed to assure that the range of discharges from
potential projects will comply with water quality requirements.
(f) If the certifying authority determines that no water quality
requirements are applicable to the waters receiving the discharge from
the proposed project, the certifying authority shall grant
certification.
Sec. 121.8 Effect of denial of certification.
(a) A certification denial shall not preclude a project proponent
from submitting a new certification request, in accordance with the
substantive and procedural requirements of this part.
(b) Where a Federal agency determines that a certifying authority's
denial satisfies the requirements of Sec. 121.7(e), the Federal agency
must provide written notice of such determination to the certifying
authority and project proponent, and the license or permit shall not be
granted.
Sec. 121.9 Waiver.
(a) The certification requirement for a license or permit shall be
waived upon:
(1) Written notification from the certifying authority to the
project proponent and the Federal agency that the certifying authority
expressly waives its authority to act on a certification request; or
(2) The certifying authority's failure or refusal to act on a
certification request, including:
(i) Failure or refusal to act on a certification request within the
reasonable period of time;
(ii) Failure or refusal to satisfy the requirements of Sec.
121.7(c);
(iii) Failure or refusal to satisfy the requirements of Sec.
121.7(e); or
(iv) Failure or refusal to comply with other procedural
requirements of section 401.
(b) A condition for a license or permit shall be waived upon the
certifying authority's failure or refusal to satisfy the requirements
of Sec. 121.7(d).
(c) If the certifying authority fails or refuses to act, as
provided in this section, the Federal agency shall provide written
notice to the Administrator, certifying authority, and project
proponent that waiver of the certification requirement or condition has
occurred. This notice must be in writing and include the notice that
the Federal agency provided to the certifying authority pursuant to
Sec. 121.6(b).
(d) A written notice of waiver from the Federal agency shall
satisfy the project proponent's requirement to obtain certification.
(e) Upon issuance of a written notice of waiver, the Federal agency
may issue the license or permit.
Sec. 121.10 Incorporation of certification conditions into the
license or permit.
(a) All certification conditions that satisfy the requirements of
Sec. 121.7(d) shall be incorporated into the license or permit.
(b) The license or permit must clearly identify any certification
conditions.
Sec. 121.11 Enforcement of and compliance with certification
conditions.
(a) The certifying authority, prior to the initial operation of a
certified project, shall be afforded the
[[Page 42287]]
opportunity to inspect the facility or activity for the purpose of
determining whether the discharge from the certified project will
violate the certification.
(b) If the certifying authority, after an inspection pursuant to
subsection (a), determines that the discharge from the certified
project will violate the certification, the certifying authority shall
notify the project proponent and the Federal agency in writing, and
recommend remedial measures necessary to bring the certified project
into compliance with the certification.
(c) The Federal agency shall be responsible for enforcing
certification conditions that are incorporated into a federal license
or permit.
Subpart C--Other Jurisdictions
Sec. 121.12 Determination of effects on neighboring jurisdictions.
(a) A Federal agency shall within 5 days notify the Administrator
when it receives a license or permit application and the related
certification.
(b) Within 30 days after the Administrator receives notice in
accordance with Sec. 121.12(a), the Administrator at his or her
discretion may determine that the discharge from the certified project
may affect water quality in a neighboring jurisdiction. In making this
determination and in accordance with applicable law, the Administrator
may request copies of the certification and the federal license or
permit application.
(c) If the Administrator determines that the discharge from the
certified project may affect water quality in a neighboring
jurisdiction, the Administrator, within 30 days after receiving notice
in accordance with Sec. 121.12(a), shall notify that neighboring
jurisdiction, the certifying authority, the Federal agency, and the
project proponent. The federal license or permit may not be issued
pending the conclusion of the processes in this paragraph.
(1) Notification from the Administrator shall: Be in writing, be
dated, and identify the materials provided by the Federal agency. The
notification shall inform the neighboring jurisdiction that it has 60
days to notify the Administrator and the Federal agency, in writing,
whether it has determined that the discharge will violate any of its
water quality requirements, to object to the issuance of the federal
license or permit, and to request a public hearing from the Federal
agency.
(2) Notification of objection and request for a hearing from the
neighboring jurisdiction shall: Be in writing; identify the receiving
waters it determined will be affected by the discharge; and identify
the specific water quality requirements it determines will be violated
by the certified project.
(3) If the neighboring jurisdiction requests a hearing in
accordance with Sec. 121.12(c)(2), the Federal agency shall hold a
public hearing on the neighboring jurisdiction's objection to the
license or permit.
(i) The Federal agency shall provide the hearing notice to the
Administrator at least 30 days before the hearing takes place.
(ii) At the hearing, the Administrator shall submit to the Federal
agency his or her evaluation and recommendation(s) concerning the
objection.
(iii) The Federal agency shall: Consider recommendations from the
neighboring jurisdiction and the Administrator, and any additional
evidence presented to the Federal agency at the hearing; and determine
whether additional certification conditions are necessary to assure
that the discharge from the certified project will comply with the
neighboring jurisdiction's water quality requirements.
(iv) If additional certification conditions cannot assure that the
discharge from the certified project will comply with the neighboring
jurisdiction's water quality requirements, the Federal agency shall not
issue the license or permit.
Subpart D--Certification by the Administrator
Sec. 121.13 When the Administrator certifies.
(a) Certification by the Administrator that the discharge from a
proposed project will comply with water quality requirements is
required where no state, tribe, or interstate agency has authority to
give such a certification.
(b) In taking action pursuant to this paragraph, the Administrator
shall comply with the requirements of Clean Water Act section 401 and
40 CFR part 121.
Sec. 121.14 Request for additional information.
(a) If necessary, the Administrator may request additional
information from the project proponent, provided that the initial
request is made within 30 days of receipt.
(b) The Administrator shall request only additional information
that is within the scope of certification and is directly related to
the discharge from the proposed project and its potential effect on
receiving waters.
(c) The Administrator shall request only information that can be
collected or generated within the reasonable period of time.
(d) In any request for additional information, the Administrator
shall include a deadline for the project proponent to respond.
(1) The project proponent shall comply with the deadline
established by the Administrator.
(2) The deadline must allow sufficient time for the Administrator
to review the additional information and to act on the certification
request within the reasonable period of time.
(e) Failure of a project proponent to timely provide the
Administrator with additional information does not extend the
reasonable period of time or prevent the Administrator from taking
action on a certification request.
Sec. 121.15 Notice and hearing.
(a) Within 20 days of receipt, the Administrator shall provide
appropriate public notice of receipt, including to parties known to be
interested in the proposed project or in the receiving waters into
which the discharge may occur.
(b) If the Administrator in his or her discretion determines that a
public hearing is appropriate or necessary, the EPA shall: Schedule
such hearing at an appropriate time and place; and, to the extent
practicable, give all interested and affected parties the opportunity
to present evidence or testimony in person or by other means at the
hearing.
Subpart E--Consultations
Sec. 121.16 Review and advice.
The Administrator may, and upon request shall, provide Federal
agencies, certifying authorities, and project proponents with relevant
information and assistance regarding the meaning of, content of,
application of, and methods to comply with water quality requirements.
[FR Doc. 2020-12081 Filed 7-10-20; 8:45 am]
BILLING CODE 6560-50-P