Announcement of Requirements and Registration for the Culture-Independent Straintyping and Characterization Challenge, 51340-51341 [2014-20428]

Agencies

• Centers for Disease Control and Prevention
• DEPARTMENT OF HEALTH AND HUMAN SERVICES

[Federal Register Volume 79, Number 167 (Thursday, August 28, 2014)]
[Notices]
[Pages 51340-51341]
From the Federal Register Online via the Government Printing Office [www.gpo.gov]
[FR Doc No: 2014-20428]


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DEPARTMENT OF HEALTH AND HUMAN SERVICES

Centers for Disease Control and Prevention


Announcement of Requirements and Registration for the Culture-
Independent Straintyping and Characterization Challenge

AGENCY: Centers for Disease Control and Prevention (CDC), Department of 
Health and Human Services (HHS).

ACTION: Notice.

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    Authority:  15 U.S.C. 3719.

    Award Approving Official: Thomas R. Frieden, MD, MPH, Director, 
Centers for Disease Control and Prevention, and Administrator, Agency 
for Toxic Substances and Disease Registry.

SUMMARY: The Centers for Disease Control and Prevention (CDC) located 
within the Department of Health and Human Services (HHS) launches a 
challenge competition for the development of a method or process to 
accurately and efficiently identify, subtype, and characterize 
pathogenic microorganisms directly from clinical or environmental 
samples without the need for culture or culture-based enrichment.
    Laboratory-based infectious disease surveillance programs, such as 
PulseNet, the National Tuberculosis Surveillance System, and the Active 
Bacterial Core Surveillance program, rely on primary culture and 
microbiologic testing in community hospital and clinical laboratories. 
A new generation of non-culture-based diagnostic tests are now 
beginning to enter the marketplace offering physicians faster results 
and, in some cases, more types of information than were previously 
available. Unfortunately, these new tests do not typically result in 
isolates being available for public health purposes, and, as their use 
continues to grow, it will likely become increasingly difficult or 
impossible to detect and investigate outbreaks or other important 
infectious disease trends. New laboratory approaches that do not depend 
on isolates or culture for subtyping and characterization of microbes 
are needed to maintain and improve important public health activities 
across a range of pathogenic organisms.
    The Culture-Independent Straintyping and Characterization Challenge 
is an opportunity to develop novel approaches to identifying and 
characterizing pathogens similar to normal flora in a complex matrix in 
a process that does not require any culture, including pre-enrichment. 
Straintyping and characterization of the Shiga toxin-producing 
Escherichia coli (STEC) from clinical stool samples represents a 
significant challenge and has been selected as the target organism for 
this challenge. STEC are similar in most respects to the commensal E. 
coli that are carried in the intestinal tract of nearly everyone. 
Consistent identification, straintyping, and characterization of 
pathogenic STEC directly from a complex matrix, such as stool, requires 
the consistent identification of both a variable marker that can be 
used for subtyping and a second, more stable marker that can be used 
for definitive identification.

How To Enter

     Sign up for a Challenge.gov account and become a follower 
of the Culture-Independent Straintyping and Characterization Challenge 
at https://www.cdc.gov/amd/cidtchallenge.
     Review the rules and guidelines of this contest listed 
below and at https://www.cdc.gov/amd/cidtchallenge.

DATES: Contestants can submit solutions between September 2, 2014 and 
November 30, 2014. Judging will take place between December 1 and 10, 
2014, during which time additional information, clarification or 
documentation may be requested. The winner will be notified and prize 
awarded by December 15, 2014.
    Contest Prizes: We will choose one winning proposal and award 
$200,000 by electronic funds transfer. The winner may need to pay 
Federal income taxes on any prize money. We will follow Internal 
Revenue Service withholding and reporting requirements, where 
applicable.
    How Winners Will Be Selected: An expert panel of CDC program staff 
with expertise in diagnostic testing, bioinformatics, and biotechnology 
who meet the requirements of the America COMPETES Act will evaluate all 
entries. The judging panel will use the following criteria to select a 
single winning submission:
    (1) Resolution and typeability: Ability to accurately straintype 
and characterize STEC at high resolution from a stool sample matrix, 
without the need for culture-based amplification.
    (2) Reproducibility and stability: Ability to return consistent, 
unambiguous results from three or more replicate specimens.
    (3) Throughput parameters: Proposed solutions should have a 
feasible sample-to-answer turnaround time of under 48 hours, and a per-
sample reagent and consumables cost of $100 per sample or less. Methods 
should be scalable to accommodate high-throughput testing.
    (4) Portability: Data should be objective, based on open or 
established standards, and amenable for computerized analysis and 
easily disseminated between laboratories.
    (5) Generalizability: While the subject organism for this challenge 
is STEC, special consideration will be given to proposals that may be 
readily adapted to a range of other pathogenic microorganisms.
    (6) Epidemiologic concordance: Consistency of the resultant data 
with the known epidemiologic context of the specimen.

Contest Rules and Guidelines

    Subject of Contest Competition: Your entry for the Culture-
Independent Straintyping and Characterization Challenge should describe 
a novel or innovative method to straintype and characterize pathogenic 
organisms, such as STEC, directly from a complex clinical sample, 
without the need for culture or culture-based amplification.
    Eligibility Rules for Participating in the Competition: The contest 
is open to everyone, with the exceptions noted below. Participants may 
submit individual proposals or work as teams.
    To have a chance to win a prize in this contest you must--
    (1) Register for the contest at CHALLENGE.GOV and follow posted 
contest rules;
    (2) Meet all of the requirements in this section;
    (3) Enter the contest as an individual or as a team in which a you 
or all members of the team are citizen(s) or permanent resident(s) of 
the United States; or as an entity where entities are limited to those 
that are incorporated and maintain a primary place of business in the 
United States; and
    (4) Federal employees may not participate in this contest in their 
official capacity. Federal employees seeking to participate in this 
contest should talk with their ethics official before submitting a 
proposal.
    (5) Federal grantees cannot use Federal funds to develop COMPETES 
Act challenge applications unless consistent with the purpose of their 
grant award.

[[Page 51341]]

    (6) Federal contractors cannot use Federal funds from a contract to 
develop COMPETES Act challenge applications or to fund efforts in 
support of a COMPETES Act challenge submission.
    You can use Federal facilities (e.g., laboratories) or speak with 
Federal employees during the contest only if those same Federal 
facilities and employees are equally available to everyone 
participating in the contest (for example, such availability could be 
announced on a public Web site).
    If laboratory work is required to support your submission, all work 
should be performed under appropriate biosafety level 2 (BSL2) 
conditions, and in accordance with standard precautions for the 
handling and processing of clinical specimens.
    By participating in this contest, contestants agree to assume any 
and all risks and waive claims against the Federal Government and its 
related entities, except in the case of willful misconduct, for any 
injury, death, damage, or loss of property, revenue, or profits, 
whether direct, indirect, or consequential, arising from participation 
in this prize contest, whether the injury, death, damage, or loss 
arises through negligence or otherwise. By participating in this 
contest, contestants agree to indemnify the Federal Government against 
third party claims for damages arising from or related to contest 
activities.
    Contestants warrant that their submissions are wholly original and 
do not infringe upon any rights of any third party of which Contestants 
are aware.
    Registration Process for Participants: All participants for the 
Culture-Independent Straintyping and Characterization Challenge must 
register before submitting a proposal. Registration instructions are 
available at https://www.cdc.gov/amd/cidtchallenge. Deadline for 
registration is October 1, 2014.
    Additional Information: More information on or about CDC's Advanced 
Molecular Detection and Response to Outbreaks of Infectious Diseases 
initiative can be found at: www.cdc.gov/amd.
    Regarding Copyright/Intellectual Property: When you submit your 
entry, you must certify that you are the person who developed the 
submission and that you maintain intellectual property rights to the 
process and solution that you propose. You also must ensure that you 
did not use any copyrighted material or affect the rights of any third 
party to the best of your knowledge.
    Submission Rights: Once you submit your solution, you give HHS/CDC 
permission to review and evaluate your submission, and to post and 
share information about your solution in the context of the contest, 
its participants and its awardee. You cannot take this permission back 
or ask us for money to use your submission for these purposes. You can, 
however, give other people permission to use your method or solution to 
this challenge while the contest is ongoing, and may keep all other 
intellectual property rights to your solution and your work.
    Compliance With Rules and Contacting Contest Winners: In order to 
win the contest, you must meet all terms and conditions of these 
Official Rules. You can be named a winner only if you meet all the 
requirements. We will contact the winner using the contact information 
provided (by email, telephone, or mail after the date of the judging). 
You may need to pay Federal income taxes on any prize money. The 
Department of Health and Human Services will follow the Internal 
Revenue Service withholding and reporting requirements, where 
applicable.
    Privacy: If you provide personal information to use when you 
register for the contest at the Challenge.gov Web site, we will use 
that information to contact you about your entry, and to announce 
updates and the final contest winner. We will not use the information 
for commercial marketing.
    General Conditions: HHS/CDC can cancel, suspend, or change the 
contest, or any part of it, for any reason.

    Dated: August 22, 2014.
Ron A. Otten,
Acting Deputy Associate Director for Science, Centers for Disease 
Control and Prevention.
[FR Doc. 2014-20428 Filed 8-27-14; 8:45 am]
BILLING CODE 4163-18-P