Listing Endangered and Threatened Species; 12-Month Finding on a Petition To List Chinook Salmon in the Upper Klamath and Trinity Rivers Basin as Threatened or Endangered Under the Endangered Species Act, 19597-19605 [2012-7879]
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status review report can also be found
at: https://swr.nmfs.noaa.gov/.
FOR FURTHER INFORMATION CONTACT:
Rosalie del Rosario at (562) 980–4085 or
Ann Garrett at (707) 825–5175, NMFS,
Southwest Region Office; or Lisa
Manning at (301) 713–1401, NMFS,
Office of Protected Resources.
SUPPLEMENTARY INFORMATION:
DEPARTMENT OF COMMERCE
National Oceanic and Atmospheric
Administration
50 CFR Parts 223 and 224
[Docket No. 110328226–2189–02]
RIN 0648–XA272
Listing Endangered and Threatened
Species; 12-Month Finding on a
Petition To List Chinook Salmon in the
Upper Klamath and Trinity Rivers
Basin as Threatened or Endangered
Under the Endangered Species Act
National Marine Fisheries
Service (NMFS), National Oceanic and
Atmospheric Administration (NOAA),
Commerce.
ACTION: Status review; notice of finding.
AGENCY:
We, NMFS, announce a 12month finding on a petition to list the
Chinook salmon (Oncorhynchus
tshawytscha) in the Upper Klamath and
Trinity Rivers Basin (UKTR) as
threatened or endangered and designate
critical habitat under the Endangered
Species Act (ESA). We have reviewed
the status of the UKTR Chinook salmon
Evolutionarily Significant Unit (ESU)
and considered the best scientific and
commercial data available, and
conclude that the petitioned action is
not warranted. In reaching this
conclusion, we conclude that spring-run
and fall-run Chinook salmon in the
UKTR Basin constitute a single ESU.
Based on a comprehensive review of the
best scientific and commercial data
currently available, and consistent with
the 1998 status review and listing
determination for the UKTR Chinook
salmon ESU, the overall extinction risk
of the ESU is considered to be low over
the next 100 years. Based on these
considerations and others described in
this notice, we conclude this ESU is not
in danger of extinction throughout all or
a significant portion of its range, nor is
it likely to become so in the foreseeable
future.
DATES: The finding announced in this
notice was made on April 2, 2012.
ADDRESSES: Information used to make
this finding is available for public
inspection by appointment during
normal business hours at the office of
NMFS Southwest Region, Protected
Resources Division, 501 West Ocean
Blvd., Suite 4200, Long Beach, CA
90802. This file includes the status
review report, information provided by
the public, and scientific and
commercial information gathered for the
status review. The petition and the
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SUMMARY:
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Background
On January 28, 2011, the Secretary of
Commerce received a petition from the
Center for Biological Diversity, Oregon
Wild, Environmental Protection
Information Center, and The Larch
Company (hereafter, the petitioners), to
list Chinook salmon (Oncorhynchus
tshawytscha) in the Upper Klamath
Basin under the ESA. Because their
request is generally made in reference to
the UKTR ESU of Chinook salmon, we
use the description of that ESU (Myers
et al., 1998 and 63 FR 11482; March 9,
1998) as the area in which they are
requesting that we list Chinook salmon,
and hereafter refer to that area as the
Upper Klamath and Trinity Rivers
basin. The petitioners identified three
alternatives for listing Chinook salmon
in the UKTR ESU: (1) Listing spring-run
Chinook salmon in the UKTR ESU as a
separate ESU; (2) listing spring-run
Chinook salmon in the UKTR ESU as a
distinct population segment within the
currently defined UKTR Chinook
salmon ESU; or (3) listing the currently
defined UKTR Chinook salmon ESU,
which includes both spring-run and fallrun populations. The petitioners also
requested that we designate critical
habitat for any Chinook salmon
populations found to warrant listing.
After reviewing the petition, the
literature cited in the petition, and other
literature and information available in
our files, we found that the petition met
the criteria in our implementing
regulations at 50 CFR 424.14(b)(2) that
are applicable to our 90-day review and
determined that the petition presented
substantial information indicating that
the petitioned action may be warranted
(76 FR 20302; April 12, 2011). In that
90-day finding, we explained why we
would not further consider Petitioners’
second alternative for listing Chinook
salmon in the UKTR ESU. We described
NMFS’ Policy on Applying the
Definition of Species Under the
Endangered Species Act to Pacific
Salmon (ESU Policy; 56 FR 68612;
November 20, 1991), which explains
that a Pacific salmon stock will be
considered a distinct population
segment, and hence a ‘‘species’’ under
the ESA, if it represents an ESU of the
biological species. We also explained
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the two criteria for delineating an ESU.
Under its second alternative, Petitioners
suggest that, even if we determine that
spring-run Chinook salmon in the UKTR
ESU do not meet the criteria to be
delineated as a separate ESU under the
ESU Policy, we should apply the two
criteria under the U.S. Fish and Wildlife
Service (USFWS) and NMFS Policy
Regarding the Recognition of Distinct
Vertebrate Population Segments under
the Endangered Species Act (DPS
Policy; 61 FR 4722; February 7, 1996) to
determine that spring-run Chinook
salmon in the UKTR ESU are a separate
distinct population segment within the
UKTR ESU. As we described in the 90day finding, NMFS will continue to
apply the criteria in the ESU Policy to
Pacific salmon, which includes Chinook
salmon, rather than the criteria in the
DPS Policy. Because the ESU Policy
explains under what criteria Pacific
salmon populations will be considered
a distinct population segment, and
hence a ‘‘species’’ under the ESA, if we
evaluate spring-run Chinook salmon in
the UKTR according to the criteria of the
ESU Policy, we will be determining
whether spring-run Chinook salmon are
considered a distinct population
segment. In the 90-day finding, we also
solicited information pertaining to the
species and the issues raised in the
petition. Following publication of our
90-day finding, we commenced a status
review of Chinook salmon in the UKTR
ESU. In response to the 90-day finding
we received over 50 written comments
from the public, which we considered
in making this 12-month finding.
In support of the status review,
NMFS’ Southwest Fisheries Science
Center (SWFSC) convened a Biological
Review Team (BRT) charged with
compiling and reviewing the best
available scientific and commercial
information on Chinook salmon
necessary to: (1) Evaluate whether this
information supports the current UKTR
Chinook salmon ESU configuration or
the separation of spring-run and fall-run
Chinook salmon into separate ESUs; and
(2) assess the biological status of
Chinook salmon populations
comprising whichever ESU
configuration was best supported by the
available information using NMFS’
viable salmonid population (VSP)
framework for the analysis. The BRT
was composed of scientists from the
SWFSC and Northwest Fisheries
Science Center, USFWS, and U.S. Forest
Service with expertise in the biology,
genetics, and ecology of UKTR ESU
Chinook salmon. The BRT compiled,
reviewed, and evaluated the best
available scientific and commercial
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information concerning the ESU
configuration and biological status of
spring-run and fall-run Chinook salmon
populations in the UKTR basin,
including information provided by the
petitioners, peer-reviewed literature,
information provided by other parties
interested in this issue, and other
information deemed pertinent by the
BRT. Following its review, the BRT
prepared a report summarizing the
information they reviewed, their
analysis, and conclusions regarding ESU
configuration and biological status
(Williams et al., 2011). This report was
peer reviewed by two independent
scientific experts who have expertise
with salmon and steelhead issues in the
Klamath Basin. One reviewer has
specific expertise on UKTR Chinook
salmon genetics, and the other reviewer
has expertise in the ecology of UKTR
Chinook salmon. The reviewers’
comments were incorporated into the
final report.
If a petition is found to present
substantial scientific information
indicating that the petitioned action
may be warranted, ESA section
4(b)(3)(B) (16 U.S.C. 1533(b)(3)(B))
requires the Secretary of Commerce to
make a finding within 12 months of
receipt of the petition (commonly
referred to as a 12-month finding) as to
whether a petitioned action is
warranted. The Secretary has delegated
the authority to make this finding to the
NOAA Assistant Administrator for
Fisheries. This Federal Register notice
documents our 12-month finding on this
petition.
Species Background
Information on the biology and life
history of UKTR Chinook salmon is
summarized in Myers et al. (1998) and
a listing determination for west coast
Chinook salmon (63 FR 11482; March 9,
1998). In 1998, NMFS completed a
status review of the UKTR Chinook
salmon ESU and found that it is
comprised of both spring-run and fallrun populations (Myers et al., 1998), as
will be further described in the
following section. Historically, springrun Chinook salmon were likely the
predominant run type in the KlamathTrinity River Basin (Myers et al., 1998).
Most spring-run spawning and rearing
habitat was blocked by the construction
of dams in the late 1800s and early
1900s in the Klamath River and in the
1960s in the Trinity River Basin (Myers
et al., 1998). As a result of these and
other factors, spring-run populations
were considered to be at less than 10
percent of their historical levels (Myers
et al., 1998). Fall-run populations now
comprise the majority of UKTR Chinook
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salmon. Most of the spring-run
populations are currently distributed
throughout the New, South Fork Trinity,
Upper Trinity, and Salmon rivers. The
more widely distributed fall-run
Chinook salmon inhabit most accessible
streams in the ESU, though their
distribution generally does not extend
as far into the tributary drainages as
spring-run Chinook salmon. As with all
Chinook salmon populations south of
the Columbia River, the majority of
Chinook salmon in the UKTR ESU
exhibit an ‘‘ocean-type’’ life history with
juveniles migrating to the ocean within
one year of hatching (Myers et al., 1998).
Anadromous salmonids in California,
like UKTR Chinook salmon, exist at the
southern edge of their range along the
west coast of North America.
Two hatcheries are operated in the
UKTR basin, Iron Gate Hatchery on the
Klamath River and Trinity River
Hatchery on the Trinity River, that
annually release large numbers of
spring-run and fall-run Chinook salmon
fingerlings and yearlings into the basin.
Marine recoveries of coded-wire tags
indicate that hatchery-origin fall- and
spring-run Chinook salmon from these
hatcheries have a similar coastal
distribution offshore of California and
Oregon (Myers et al., 1998).
Species Delineation
ESA Section 3(16) (16 U.S.C.
1532(16)) defines a ‘‘species’’ to include
any subspecies of fish or wildlife or
plant, and any distinct population
segment of any species of vertebrate fish
or wildlife which interbreeds when
mature. In 1991, we published the ESU
Policy (56 FR 58612; November 20,
1991), which describes how we apply
the definition of ‘‘species’’ in evaluating
Pacific salmon populations for listing
under the ESA. Under this policy, a
group of Pacific salmon populations is
considered an ESU if it is (1)
reproductively isolated from other conspecific population units, and (2)
represents an important component in
the evolutionary legacy of the species.
Under this policy, an ESU is considered
to be a ‘‘distinct population segment’’
and thus a ‘‘species’’ under the ESA.
ESU Configuration
Based on biological, genetic, and
ecological information compiled and
reviewed as part of a previous west
coast status review for Chinook salmon
(Myers et al., 1998), we included all
spring-run and fall-run Chinook salmon
populations in the Klamath River Basin
upstream from the confluence of the
Klamath and Trinity rivers in the UKTR
Chinook salmon ESU (Myers et al., 1998
and 63 FR 11482, 11487; March 9,
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1998). The petitioners contend new
information demonstrates that springrun and fall-run Chinook salmon in the
UKTR ESU qualify as separate ESUs
based on significant and persistent
genetic and reproductive isolation
resulting from their different run timing.
They further argue that the genetic
differences between spring-run and fallrun Chinook salmon in the UKTR
Chinook salmon ESU are comparable to
genetic differences between spring-run
and fall-run Chinook salmon in
California’s Central Valley, which are
recognized as separate ESUs by NMFS
(Myers et al., 1998 and 70 FR 37160;
June 28, 2005). The BRT carefully
reviewed the petition and all other
available and relevant information
regarding the ESU configuration of
Chinook salmon populations in the
UKTR basin and prepared a report
detailing their review and conclusions
(Williams et al., 2011).
Under our ESU policy, Williams et al.
(2011) indicate that for spring-run and
fall-run Chinook salmon populations in
the UKTR ESU to be considered
separate ESUs, they would need to be
substantially reproductively isolated
from each other, and they each must
represent an important component in
the evolutionary legacy of the species.
Under the ESU Policy framework, they
indicate that the concept of evolutionary
legacy implies there would need to be
a monophyletic pattern in the
evolutionary history of each of the two
run types within the UKTR basin, and
that spring-run Chinook salmon
individuals and populations would
need to be more similar genetically to
each other than to fall-run Chinook
salmon individuals and populations.
As discussed in Williams et al. (2011),
NMFS has delineated populations of
spring-run and fall-run Chinook salmon
in the same basin as separate ESUs in
only two areas: California’s Central
Valley and in the interior Columbia
River Basin. Chinook salmon
populations in the Central Valley are
monophyletic in origin, meaning they
descended from a common ancestor and
are more closely related to each other
than to Chinook salmon populations in
any other basin on the west coast.
However, there is significant genetic
divergence between most naturally
spawning populations of fall-run and
spring-run Chinook salmon that occur
in the same rivers in the Central Valley
and both run types are monophyletic
rather than polyphyletic. For these and
other reasons, NMFS separated springrun and fall-run Chinook populations in
the Central Valley into separate ESUs. In
the interior Columbia Basin, spring-run
and fall-run Chinook salmon are not
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closely related genetically and represent
two very divergent evolutionary
lineages (Myers et al., 1998; Waples et
al., 2004), and therefore were placed
into separate ESUs.
In contrast, spring-run and fall-run
Chinook salmon populations found in
the coastal basins in California, Oregon,
and Washington or the lower Columbia
River basin have not been separated into
separate ESUs despite differences in
adult run-timing, life-history strategies,
and other phenotypic characteristics
that sometimes accompany genetic
differences (Williams et al., 2011). The
primary reason for not separating fallrun and spring-run Chinook salmon into
separate ESUs in these coastal basins is
that their genetic population structure
strongly suggests a polyphyletic pattern
of run timing evolution (Myers et al.,
1998; Waples et al., 2004), with spring
and fall-run life histories having
evolved on multiple occasions in
different watersheds. Williams et al.
(2011) indicate this polyphyletic pattern
of run timing is observed in watersheds
adjacent to the Klamath basin and
across a range of watershed sizes in
California (Mad River, Redwood Creek
and Eel River) and Oregon (Rogue and
Umpqua rivers).
Williams et al. (2011) reviewed new
genetic information for Chinook salmon
populations in the UKTR ESU (Banks et
al., 2000a; Kinziger et al., 2008a;
Kinziger et al., 2008b; Kinziger et al., In
Preparation,), as well as other studies
(Lindley et al., 2004; Waples et al.,
2004; Garza et al., 2007), to assess
patterns of genetic population structure
and population differentiation within
the UKTR ESU and to compare those
patterns with what has been observed in
other basins (e.g., Central Valley and
other coastal watersheds). Kinziger et al.
(2008a) found that there are four
genetically differentiated and
geographically separated groups of
Chinook salmon populations in the
UKTR basin and that spring-run and
fall-run Chinook life histories have
evolved independently and in parallel
within both the Salmon and Trinity
rivers. Kinziger et al. (In Preparation)
documented the same geographic
population structure reported by
Kinziger et al. (2008a) and indicated the
genetic difference between populations
was related to geographic distance and
was independent of run timing (i.e.,
spring-run versus fall-run). In addition,
they found that spring-run and fall-run
populations in the Salmon River were
nearly indistinguishable genetically and
that spring and fall-run populations in
the South Fork Trinity were extremely
similar to each other and to the Trinity
River hatchery stocks. Banks et al.
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(2000a) reported they found greater
genetic distances between some fall-run
populations than among fall-run and
spring-run populations in the Klamath
Basin and concluded that populations
diverged according to geographic
location first and life history second.
Banks et al. (2000a) emphasized that
this pattern of geographic differentiation
is in strong contrast to that found for
Chinook salmon populations in the
Central Valley.
The petition contends that genetic
differentiation of Chinook salmon
populations in the UKTR ESU and the
Central Valley is of a similar scale, and
that our separation of spring and fallrun Chinook into separate ESUs in the
Central Valley means that spring-run
and fall-run Chinook salmon in the
UKTR ESU should also be separated.
The structure of Central Valley springrun and fall-run Chinook salmon
populations was recently reviewed by
Lindley et al. (2004), Good et al. (2005),
and Garza et al. (2007), all of whom
supported the general conclusions that:
(1) Central Valley Chinook salmon of all
run-types represent a separate lineage
from Chinook salmon populations
found in coastal watersheds; and (2)
Central Valley spring-run populations
are monophyletic, with spring-run
Chinook salmon from different basins
more closely related to each other than
to fall-run Chinook salmon from the
same basin. Lindley et al. (2004), Good
et al. (2005), and Garza et al. (2007) also
support the conclusion of Banks et al.
(2000a, 2000b) that the genetic
population structure and genetic
variation observed in Chinook salmon
populations in the Central Valley is
organized by life history (run-type)
rather than geographic location, unlike
that which is observed with the UKTR
Chinook salmon populations where
Chinook salmon populations are
organized by geographic location rather
than life history type (see Banks et al.,
2000a).
Based on a review and evaluation of
this information, Williams et al. (2011)
concluded that spring-run and fall-run
Chinook salmon populations in the
UKTR ESU constitute a single ESU as
originally defined by Myers et al.
(1998), and that the expression of the
spring-run life-history variant is
polyphyletic in origin in all of the
populations in the ESU for which data
are available.
UKTR spring-run Chinook salmon do
not warrant being separated into a
separate ESU because they fail to meet
the reproductive isolation and
evolutionary legacy criteria in our ESU
Policy for Pacific Salmon. The available
genetic evidence considered by
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Williams et al. (2011) clearly
demonstrates that spring-run and fallrun Chinook salmon populations in the
UKTR basin are genetically very similar
and are not substantially reproductively
isolated from each other. The degree of
genetic differentiation between spring
and fall-run Chinook salmon in the
UKTR basin is comparable to that
observed in other coastal basins that
support the two run types (Waples et al.,
2004) and is much less than that which
has been observed in the Interior
Columbia Basin and the Central Valley
where the two run types have been
separated into different ESUs. The
available evidence indicating that
spring-run and fall-run Chinook salmon
in the UKTR basin are polyphyletic in
origin and have evolved on multiple
occasions, together with the ocean type
life-history characteristics exhibited by
both run types, suggests that spring-run
Chinook salmon do not represent an
important component in the
evolutionary legacy of the species.
Hatchery Stocks
In 2005, NMFS published a policy on
how it would consider hatchery-origin
fish when making ESA listing
determinations for Pacific salmon and
steelhead (Hatchery Listing Policy; 70
FR 37204; June 28, 2005). Under this
policy, hatchery stocks are considered
part of an ESU in making ESA listing
determinations if their level of genetic
divergence relative to local natural
populations is no more than what
occurs between natural populations in
the ESU. NMFS used this policy and a
previous assessment of all west coast
hatchery programs (NMFS 2003) to
determine which hatchery stocks would
be considered part of west coast salmon
and steelhead ESUs in a series of listing
determinations published in 2005 and
2006, respectively (70 FR 37160; June
28, 2005 and 71 FR 834; January 5,
2006). The assessment of hatchery
stocks (NMFS 2003) used to support
these listing determinations evaluated
each hatchery stock associated with
individual salmon and steelhead ESUs
to determine its level of genetic
divergence relative to natural
populations. Based on this assessment
and application of our Hatchery Listing
Policy (70 FR 37204; June 28, 2005), we
determined that hatchery stocks that
were no more than moderately divergent
from natural populations would be
considered part of an ESU in making
listing determinations under the ESA.
Iron Gate Hatchery (IGH) produces
fall-run Chinook salmon and releases
approximately 6 million fish (fingerlings
and yearlings combined) annually in the
upper Klamath River. Trinity River
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Hatchery (TRH) produces both fall-run
and spring-run Chinook salmon and
releases approximately 3 million fallrun fish (fingerlings and yearlings
combined) and 1.3 million spring-run
fish (fingerlings and yearlings
combined), respectively, annually in the
Trinity River. The SWFSC reviewed and
evaluated the available information on
broodstock origin, history, and genetics
for these three Chinook salmon hatchery
stocks and concluded that each stock
was founded from a local, native
population in the watershed where fish
are released and that each stock is no
more than moderately divergent from
other local, natural populations.
Moderate divergence in this case means
that the hatchery stocks and local
natural populations are no more
genetically divergent than what is
observed between closely related
natural populations. Based on this
assessment and the criteria in our
Hatchery Listing Policy, we conclude
that these three hatchery stocks are part
of the UKTR Chinook salmon ESU.
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UKTR Chinook Salmon Biological
Status
Williams et al. (2011) assessed the
biological status of the UKTR Chinook
salmon ESU using methods similar to
those described in Good et al. (2005). In
conducting their review, Williams et al.
(2011) considered the best available
information on the species’ current
distribution, historical abundance,
recent abundance, trends in abundance,
population growth rates, the
distribution of hatchery-origin spawners
in natural areas, and fishery exploitation
rates. To the extent possible, Williams et
al. (2011) evaluated the available data
on the basis of putative population units
that are currently recognized by
management agencies in the Klamath
Basin such as sub-basin units (e.g., Scott
River) or specific geographic areas (e.g.,
upper Klamath River mainstem).
Wherever possible, spring-run and fallrun Chinook salmon populations were
assessed separately within specific
population units. The following
discussion summarizes the biological
status assessment of UKTR Chinook
salmon from Williams et al. (2011).
Current Distribution and Historical
Abundance
Williams et al. (2011) concluded there
have been no changes to the distribution
of UKTR Chinook salmon since the
review of Myers et al. (1998). Williams
et al. (2011) summarized information
from Myers et al. (1998) and the
California Department of Fish and Game
(CDFG 1965) that indicates the
historical abundance of Chinook salmon
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in the UKTR ESU was estimated to be
approximately 130,000 adults in 1912
(based on peak cannery pack of 18,000
cases) and 168,000 adults in 1963, with
the 1963 abundance estimate from
CDFG split evenly between Klamath and
Trinity rivers.
Recent Abundance, Trends in
Abundance, and Population Growth
Rate
As reported in Williams et al. (2011),
the numbers of adults returning to
spawning grounds (e.g., Upper Klamath,
Trinity, Scott, Salmon, and Shasta rivers
and smaller tributaries) and returns to
Iron Gate and Trinity River hatcheries
are monitored using a variety of
methods by a combination of State,
Federal, and Tribal agencies. Williams
et al. (2011) characterized the recent
spawner abundance in a manner that
was consistent with the previous coastwide salmon and steelhead status
reviews (Good et al., 2005). Based on
this analysis, recent spawner abundance
estimates of both fall-run and spring-run
Chinook salmon returning to spawn in
natural areas are generally low
compared to historical estimates of
abundance; however, the majority of
populations have not declined in
spawner abundance over the past 30
years (i.e., from the late 1970s and early
1980s to 2010) except for the Scott and
Shasta rivers where there have been
modest declines. While the BRT
considered and presented both shortand long-term population growth rate,
to be consistent with Good et al. (2005),
the BRT stated that they viewed
population growth rates based on just 13
years of data with caution given the
highly variable population dynamics
typical of salmon populations and
influences of shifting environmental
conditions. Of most interest to the BRT
were the long-term population growth
rates of the populations individually
and the ESU as a whole.
Williams et al., (2011) reported that
short-term trends in spawner abundance
declined slightly for about half of the
population components over the past 13
years, and that fall-run Chinook salmon
returns to Trinity River hatchery have
been more variable than returns of fallrun Chinook salmon to Iron Gate
hatchery. Williams et al. (2011) found
that hatchery returns did not mirror (or
did not track) escapement to natural
spawning areas. Overall, Williams et al.
(2011) concluded that there has been
little change in the abundance levels,
trends in abundance, or population
growth rates since the review by Myers
et al. (1998). They noted, however, as
did Myers et al. (1998), that the recent
abundance levels of some populations
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are low, especially in the context of
historical abundance estimates. This
was most evident with respect to two of
the three spring-run population units
that were evaluated (Salmon River and
South Fork Trinity River).
Hatchery-origin Spawners in Natural
Areas
Williams et al. (2011) evaluated the
occurrence of hatchery-origin Chinook
salmon spawners in several natural
spawning areas (i.e., Bogus Creek and
the Upper Klamath, Shasta, Scott,
Salmon, Trinity, and South Fork Trinity
rivers) over the past decade and
concluded that the majority of hatcheryorigin Chinook salmon that stray to
natural areas do so in areas adjacent to
the hatcheries. This is not unexpected
since both hatcheries release fingerlings
and yearlings ‘‘on-site,’’ as opposed to
other locations further downstream in
the basin. This finding was supported
by recent genetic analyses from Kinziger
et al. (In Preparation) that found strong
evidence for genetic isolation-bydistance that is inconsistent with
hatchery-origin fish straying in large
numbers throughout the basin.
Extinction Risk Assessment
Williams et al. (2011) used a risk
matrix approach to assess the viable
salmonid population (VSP) criteria (i.e.,
abundance, productivity, spatial
structure, and diversity) for the UKTR
Chinook salmon ESU. This approach
was used in the most recent west coast
salmon and steelhead status reviews
(Good et al., 2005) and the details of the
methodology are described in both
Williams et al. (2011) and Good et al.
(2005). Based on this risk matrix
approach, Williams et al. (2011)
concluded that the UKTR Chinook
salmon ESU was at a relatively low risk
of extinction based on abundance,
growth rate and productivity, and
spatial structure and connectivity; and
the UKTR Chinook salmon ESU was at
a moderate risk of extinction based on
diversity. The following sections briefly
summarize the conclusions of Williams
et al. (2011) regarding each of the four
VSP criteria.
Abundance
Abundance of spawning populations
in the ESU appear to have been fairly
stable for the past 30 years and since the
review by Myers et al. (1998). Although
current levels of abundance are
generally low compared with historical
estimates of abundance, the current
abundance levels do not constitute a
major risk in terms of ESU extinction.
Long-term population growth rates are
positive for most population
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components that were analyzed,
indicating they are not currently in
decline and, in general, most
populations are large enough to avoid
genetic problems.
Growth Rate and Productivity
There is no indication that growth
rates or productivity of populations
have changed since the review of Myers
et al. (1998); however, the impact of
hatchery-origin fish in some locations
and in some years is uncertain and is a
concern. Based on the available
information, hatchery influence
appeared to be most concentrated in
areas adjacent to the two hatcheries, and
spawning survey information (i.e.,
estimates of adipose fin-clipped fish)
and genetic analyses suggest there is a
low hatchery fish influence elsewhere
in the ESU.
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Spatial Structure and Connectivity
There is a broad geographic
distribution of fall-run Chinook salmon
throughout the UKTR ESU, with genetic
data (i.e., isolation-by-distance
information) indicating that there is
connectivity among populations. There
are no cases where fall-run Chinook
were found to be locally extirpated and
the spatial distribution of fall-run
Chinook salmon in the UKTR ESU
indicates that it currently occupies all
accessible available habitat. Conversely,
spring-run Chinook population numbers
are low, with few if any spring-run fish
recently observed in the Scott and
Shasta rivers. The geographic
distribution of spring-run Chinook
salmon is of some concern, with
possible extirpations perhaps reflecting
the effects of low water years and
habitat accessibility.
Diversity
Although there are extant spring-run
and fall-run Chinook salmon
populations in the basin, the low
spawner abundance in spring-run
populations continues to be a concern,
as it was in the previous review (Myers
et al., 1998). In addition to the
continued presence of both the springrun and fall-run life-history types in the
basin, the presence of large subyearlings in the Shasta River was
considered evidence of continuing life
history diversity in the ESU. Hatchery
influence in natural spawning areas
near the two hatcheries is a concern
because of its possible impacts on the
productivity and diversity of natural
spawning Chinook salmon populations
in those areas, but hatchery-origin fish
appear to be most concentrated in
relatively small areas located near the
two hatcheries rather than elsewhere
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throughout the geographic area
occupied by the ESU.
To assess the overall extinction risk of
the UKTR Chinook salmon ESU,
Williams et al. (2011) employed a
methodology (the Forest Ecosystem
Management Assessment Team,
(FEMAT) approach) that has been used
in previous west coast salmon status
reviews (see Good et al., 2005). Under
this approach, the members of the BRT
made informed professional judgments
about whether the UKTR Chinook
salmon ESU was presently in one of
three extinction risk categories: ‘‘high
risk,’’ ‘‘moderate risk,’’ and ‘‘neither at
high risk or moderate risk’’ (low risk)
based on the results of the VSP criteria
assessment and other relevant
information on the status of the ESU as
discussed previously. In its assessment,
the BRT members interpreted the high
risk category as ‘‘a greater than 5% risk
of extinction within 100 years’’, and the
moderate risk category as ‘‘more likely
than not risk of moving into the high
risk category within 30–80 years.’’
Beyond these time horizons, the BRT
members concluded it was difficult with
any degree of confidence to project ESU
extinction risk. Based on this
assessment process, Williams et al.
(2011) concluded that the UKTR
Chinook salmon ESU was at a low risk
of extinction in the next 100 years,
although the BRT did express some
uncertainty as to whether the ESU was
at low risk or moderate risk of
extinction (Table 5, Williams et al.,
2011).
Under NMFS’ Hatchery Listing
Policy, any hatchery stocks that are part
of an ESU must be considered in status
assessments for the ESU if it is being
considered for possible listing (70 FR
37204; June 28, 2005). As discussed in
the policy, any status assessment of an
ESU which includes hatchery stocks
should evaluate the manner in which
the hatchery stocks contribute to
conserving natural populations by
considering their impact on the VSP
criteria for natural populations
comprising the ESU. As noted
previously, the SWFSC determined that
the fall-run Chinook salmon stock from
IGH and the spring-run and fall-run
Chinook salmon stocks from TRH are no
more than moderately diverged from the
local, natural populations, and as a
result NMFS has concluded that these
three hatchery stocks are part of the
UKTR Chinook salmon ESU. Based on
the hatchery operations and releases, as
well as the assessment of hatcheryorigin fish spawning in natural areas
presented by Williams et al. (2011), we
conclude that these three hatchery
stocks: (1) Slightly reduce ESU
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extinction risk by increasing abundance
of Chinook salmon in the UKTR ESU;
(2) have a neutral or uncertain effect on
ESU extinction risk associated with
productivity and spatial structure
because hatchery origin fish spawn in
natural areas primarily near the
hatcheries and naturally produced
Chinook salmon populations are widely
distributed throughout the basin; and (3)
have a slightly increased effect on ESU
extinction risk associated with diversity
because of the potential impacts of
hatchery fish on naturally spawning
populations near the hatcheries.
Overall, we conclude that including
these three hatchery stocks in the UKTR
Chinook salmon ESU does not
appreciably alter the Williams et al.
(2011) assessment of the VSP status of
the UKTR Chinook salmon ESU or its
extinction risk.
As part of their status review,
Williams et al. (2011) assessed whether
there are portions of the UKTR Chinook
Salmon ESU that would constitute a
significant portion of its range. In
making this assessment they considered
a portion of the range to be significant
if its contribution to the overall viability
of the ESU was so important that,
without it, the ESU would be in danger
of extinction. The geographical range of
the ESU they considered in their
assessment was the current geographical
distribution of Chinook salmon in the
UKTR ESU, and thus they did not
consider inaccessible portions of the
historical range of Chinook salmon
upstream of dams. These considerations
are consistent with interpretations and
principles in the NMFS and USFWS
Draft Policy on Interpretation of the
Phrase ‘‘Significant Portion of Its
Range’’ in the Endangered Species Act’s
Definitions of ‘‘Endangered Species’’
and ‘‘Threatened Species,’’ which we
consider as nonbinding guidance in
making listing determinations until a
final policy is published (76 FR 76987;
December 9, 2011). Lastly, they assumed
that a significant portion of the ESU’s
range could be a geographic sub-unit of
the current ESU (e.g., the Salmon River)
or a life-history variant (spring-run or
fall-run life-history type), but based on
the petition, focused their assessment
on whether the spring-run Chinook
salmon component of the UKTR ESU
constituted a significant portion of the
ESU’s range.
Williams et al. (2011) concluded that
Chinook salmon are distributed broadly
throughout the UKTR ESU and that
there is connectivity among the
component populations in the basin
based on the available genetic
information. Within the current
geographic range of the ESU, they did
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not find any situations where there was
substantial unused habitat (i.e.,
extirpations) and concluded the spatial
distribution of Chinook salmon in the
ESU appeared to be appropriate given
the current condition of the habitat.
Williams et al. (2011) expressed concern
about the overall status of spring-run
Chinook salmon populations in the
UKTR Chinook salmon ESU, but they
did not conclude that these populations
were at immediate risk of extinction
(i.e., within the timeframe of
generations as opposed to tens of
generations) or that their demographic
status posed an immediate risk of
extinction to the ESU. The complete
loss of spring-run Chinook salmon is
unlikely in the foreseeable future, but if
that occurred Williams et al. (2011)
indicated it would reduce the viability
of the ESU by reducing its overall
diversity. Despite such a reduction in
the viability of the ESU, the BRT
concluded that the complete loss of
spring-run would not result in an
immediate risk of extinction to the
UKTR Chinook Salmon ESU. Based on
these considerations, we conclude that
spring-run Chinook salmon do not
constitute a significant portion of the
range of the UKTR Chinook salmon
ESU.
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Summary of Factors Affecting the
UKTR Chinook Salmon ESU
Section 4(a)(1) of the ESA (16 U.S.C.
1533(a)(1)) and NMFS’ implementing
regulations (50 CFR Part 424) set forth
factors and procedures for listing
species. NMFS must determine if a
species is endangered or threatened
based upon any one or a combination of
the following factors: (1) The present or
threatened destruction, modification, or
curtailment of its habitat or range; (2) its
overutilization for commercial,
recreational, scientific, or educational
purposes; (3) disease or predation; (4)
inadequacy of existing regulatory
mechanisms; or (5) other natural or
manmade factors affecting its continued
existence. NMFS has previously
reviewed and evaluated these listing
factors for west coast Chinook salmon,
including those populations that
comprise the UKTR Chinook salmon
ESU (63 FR 11482, March 9, 1998; and
NMFS 1998). These reviews have
identified a wide range of factors that
have adversely impacted Chinook
salmon and their habitat on the west
coast as well as in the UKTR ESU. The
following discussion is based on those
reviews and other more recent sources
of information.
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Present or Threatened Destruction,
Modification, or Curtailment of the
Species’ Habitat or Range
Previous reviews as cited above have
identified a range of historical and
ongoing land management activities and
practices that adversely impact
freshwater habitat used by Chinook
salmon in the UKTR ESU, including
construction of dams and other barriers
that block access to historical habitat,
water diversions, agriculture, timber
harvest, road construction, grazing, and
mining. The impacts associated with
these activities have altered or in some
cases eliminated habitat for Chinook
salmon. A more detailed discussion of
the impacts associated with these
activities can be found in Nehlsen et al.
(1991), Moyle (2002), and NRC (2004).
Within the freshwater range of the
UKTR ESU there are two important
migration barriers that block access to
historical spawning and rearing habitat:
Iron Gate Dam on the Klamath River
(DOI and CDFG 2011) and Lewiston
Dam on the Trinity River (DOI 2000).
Many of the streams blocked by these
dams were high quality snowmeltdriven tributaries or groundwater
dominated streams that supported adult
spring-run and fall-run Chinook salmon
(Moyle 2002). The presence of these
dams has impacted the production of
both spring-run and fall-run Chinook
salmon in the UKTR ESU, but they have
had a greater impact on the distribution
and abundance of spring-run Chinook
salmon (63 FR 11482; March 9, 1998).
Water diversion and agricultural
activities in the Klamath River and
Trinity River basins have altered the
timing and volume of flows in streams,
reduced habitat availability, reduced
water quality, and contributed to the
reduced productivity of natural-origin
Chinook salmon (NMFS 2010; DOI
2000). Stream water is diverted for
consumptive use in the Upper Klamath
Basin, in the Shasta and Scott River
valleys, and from the Trinity River into
other river basins (e.g., Rogue River,
Sacramento River). Substantial water
diversions, particularly during dry
water years, can nearly dewater sections
of rivers, creating barriers to Chinook
salmon migration (e.g., Scott River),
reducing the amount of available
juvenile rearing habitat, and
contributing to poor water quality. The
Klamath River is impaired by a variety
of water quality problems, including
temperature, dissolved oxygen,
nutrients, organic matter, and
microcystin (NCRWQCB 2010), all of
which can adversely impact Chinook
salmon.
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Historical and ongoing timber harvest
activities in the UKTR ESU have
reduced habitat quality for Chinook
salmon (Moyle 2002). Timber harvest
can result in the loss of riparian
vegetation, increased stream
sedimentation, warmer water
temperatures, reduced availability of
large woody debris, increased peak
runoff events, and simplified stream
habitat, including filling of pools
(Chamberlain et al., 1991). Road systems
used to access timber areas cause high
rates of erosion, landslides and in some
cases block access to habitat when
poorly designed culverts are used in
road-stream crossings (Chamberlain et
al., 1991). While mining in the UKTR
ESU has been significantly curtailed in
the past several decades, some lingering
effects from tailings piles and other
disturbances remain. Currently, there is
a moratorium on suction dredge gold
mining in California, which limits the
impact of this activity on UKTR
Chinook salmon habitat. The impacts to
UKTR Chinook salmon from land
management activities that were
identified in Myers et al. (1998) and
NMFS’ 1998 listing determination for
this ESU (63 FR 11482; March 9, 1998)
continue today, with a few exceptions
as noted above. Chinook salmon in the
UKTR ESU have persisted for several
decades at relatively stable levels of
abundance, despite the existence of
these threats to freshwater habitat, and,
therefore, it is unlikely that destruction
or modification of habitat or curtailment
of the species’ range will threaten its
continued existence now or in the
foreseeable future.
Overutilization for Commercial,
Recreational, Scientific, or Educational
Purposes
UKTR Chinook salmon are harvested
in commercial and recreational fisheries
in the ocean as well as Tribal and
recreational fisheries in the Klamath
Basin. Ocean harvest of Klamath Basin
fall-run Chinook salmon is coordinated
by the Pacific Fishery Management
Council (PFMC), Tribal harvest is
managed by the individual tribes in the
Klamath Basin, and in-river recreational
fisheries are managed by the California
Fish and Game Commission. From the
mid-1980s through 2011, the PFMC
managed the Klamath Basin fall-run
Chinook salmon fishery with twin
conservation objectives aimed at not
surpassing a maximum total
exploitation rate of 67 percent of
projected returning natural adult
spawners and achieving a minimum of
at least 35,000 natural area adult
spawners, with occasional allowances
for smaller harvests when projected
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returns were less than 35,000 adults
(i.e., de minimis fisheries; PFMC 2011).
The PFMC Salmon Fishery Management
Plan was amended in 2011 and,
beginning in 2012, the maximum
allowable exploitation rate will be 68
percent of projected natural area adult
spawners, subject to a minimum
escapement of 40,700 natural area adult
spawners, with allowances for de
minimis fisheries when the stock is at
low abundance (PFMC and NMFS
2011). The minimum natural area
spawner escapement of 40,700 adults is
the best estimate of an escapement level
that will produce maximum sustainable
yield (Salmon Technical Team 2005).
Fisheries have very rarely resulted in
exploitation rates meeting or exceeding
the maximum allowable level of 67
percent and the observed total
exploitation rate on Klamath Basin fallrun Chinook salmon has varied between
approximately 20 and 65 percent since
the late 1990s (Williams et al., 2011).
Ocean exploitation rates for Klamath
Basin spring-run Chinook salmon are
not available (Williams et al., 2011).
However, restrictions on ocean fisheries
that have been implemented as a result
of the status of Klamath Basin fall-run
Chinook salmon, Sacramento River fallrun Chinook salmon, and ESA listed
salmon stocks also protect UKTR springrun Chinook salmon, given the general
overlap in the ocean distribution of
these other stocks and UKTR spring-run
Chinook salmon (Williams et al., 2011).
In their final year of life, fall-run
Chinook salmon leave the ocean and
return to the river for spawning later in
the year than do spring-run Chinook
salmon. As a consequence, fall-run fish
are exposed to the summer ocean
fishery in their final year of life,
whereas spring-run are not. Thus, the
ocean exploitation rate on Klamath
Basin spring-run Chinook salmon is
considered to be lower than on Klamath
Basin fall-run Chinook salmon, because
of their lack of exposure to the summer
ocean fishery in their final year of life.
In-river recreational fishery
exploitation rates in the Klamath Basin
for spring-run Chinook salmon are
unknown. Williams et al. (2011)
indicated that in-river Tribal
exploitation rates in recent years have
generally been comparable to or slightly
greater than those reported by Myers et
al. (1998), particularly for spring-run
Chinook salmon. To reduce impacts on
spring-run adult escapement, the Yurok
Tribe has enacted voluntary
conservation measures since the early
1990s. The most recent example is the
closure of the gillnet fishery three days
per week and the prohibition of
commercial fishing during the 2011
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spring-run Chinook salmon migration
period. Overall, impacts from
commercial, recreational, and Tribal
harvest do not appear to have changed
significantly since they were last
reviewed in 1998 (Myers et al., 1998).
Because of the relatively robust
regulatory controls on the harvest and
other uses of Chinook salmon in the
UKTR ESU and the reductions in overall
harvest from historic levels,
overutilization of Chinook salmon in
this ESU for commercial, recreational or
scientific purposes is unlikely to
threaten the ESU’s continued existence
now or in the foreseeable future.
Disease or Predation
Diseases that cause mortality to UKTR
Chinook salmon adults and juveniles
are prevalent in the Klamath Basin,
particularly in the mainstem Klamath
River. In the fall of 2002, over 30,000
fall-run Chinook salmon died in the
Klamath River as a result of low water
discharge, large run size, high water
temperatures, and an epizootic outbreak
of the bacterium Flavobacterium
columnare (columnaris) and the parasite
Ichthyopthirius multifilis (ich) (CDFG
2004). Since that event, there have been
substantial efforts to reduce the
likelihood that such events will occur in
the future or to minimize the impacts of
any future event (CDFG 2011). An
interagency task force has been
organized to provide early warning and
response to a potential fish kill that
would entail requesting water releases
from either Iron Gate or Lewiston dams
if Klamath River flows fall below a
specified minimum threshold during
the adult fall-run Chinook salmon
migration period.
An area of high parasite infections
exists in the upper Klamath River from
its confluence with the Shasta River
downstream to the Seiad Valley (Foote
et al., 2011). Infection by Ceratomyxa
shasta can be a significant mortality
factor for juvenile Chinook salmon; the
average infection rate for fish in the
Klamath River upstream from its
confluence with the Trinity River was
30 percent from 2004–2008, and 54
percent in 2009 (True et al., 2011).
Because high water temperature is one
of the primary drivers for disease
infection rates (Foote et al., 2011),
increased water temperatures associated
with drought, climate change, and
human activities (e.g., water diversions)
are predicted to increase disease rates in
the future (Woodson et al., 2011).
Naturally-produced Chinook salmon
fry are preyed upon by hatchery
steelhead in the upper Trinity River
(Naman and Sharpe 2011). There is
limited information on pinniped
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predation of Chinook salmon in the
UKTR ESU, but one study from the
Klamath River estuary in 1997 estimated
that over 8 percent of the fall-run
Chinook salmon escapement was
consumed by pinnipeds (Hillemeier
1999).
Diseases are unlikely to threaten the
ESU’s continued existence now or in the
foreseeable future, unless climate
change in the basin causes a substantial
increase in disease related mortality.
However, the magnitude of any such
effects is difficult to predict with any
degree of certainty. Predation is unlikely
to threaten the ESU’s continued
existence now or in the foreseeable
future.
Inadequacy of Existing Regulatory
Mechanisms
Forest practices, managed by the State
and the Federal Government, have
generally improved since 1998,
although some practices do not
adequately protect Chinook salmon or
other salmonids. About 68 percent of
the land within the UKTR ESU is
managed by the U.S. Forest Service
(USFS) and the Bureau of Land
Management (BLM) under the
Northwest Forest Plan (NWFP). The
NWFP and its associated Aquatic
Conservation Strategy (ACS), which was
designed to protect salmon and
steelhead habitat by maintaining and
restoring ecosystem health at watershed
and landscape scales, has improved the
landscape through changes in timber
harvesting and road maintenance and
construction. A recent report assessing
the overall effectiveness of the NWFP
indicates that there have been positive
changes in watershed condition scores
throughout the range of the NWFP, with
trends indicating small increases in
vegetation scores (Lanigan et al., 2011).
While overall road density changed only
slightly across the area of the NWFP,
road densities remain high in some
portions of the UKTR Chinook salmon
ESU (e.g., South Fork Trinity River).
Since 1998, NMFS has actively
engaged with the State Board of Forestry
to facilitate improvements in
California’s state forest practice rules to
improve aquatic habitat protection. The
Board of Forestry has made some
improvements to the rules. However,
the current forest practice rules will
continue to be considered inadequate
for anadromous salmonids until the full
suite of needed protections outlined by
NMFS in public hearings and the
Northern California steelhead listing (65
FR 36074; June 7, 2000) are adopted.
Enforcement of State fishery
regulations and Tribal trust fishing
rights is a challenge within the UKTR
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ESU. The Yurok Tribe and Hoopa Valley
Tribe have Federally reserved fishing
rights, but the Federally reserved
salmon and steelhead fishing rights of
other Tribes have not been established.
Under their Federally reserved rights,
the Yurok Tribe and Hoopa Valley Tribe
are entitled to a moderate living
standard or 50 percent of the harvest of
Klamath-Trinity Basin salmon.
However, members of the Karuk Tribe
are authorized to fish with traditional
hand-held dip nets at their indigenous
fishing site at Ishi Pishi Falls under
State fishing regulations. Thus, the
management of in-river harvest of
salmonids is shared between Federal,
Tribal, and State agencies and depends
upon whether the Tribe has a Federally
reserved fishing right or is harvesting
salmon under State fishing regulations.
Monitoring and enforcement of in-river
harvest is hampered by the complexity
of the regulations governing the in-river
fishery. Although the extent to which
illegal harvest is a problem is unclear,
illegal harvest of UKTR Chinook salmon
has been documented. For example,
State law enforcement officers have
confiscated gill nets and fishing rods in
the New River watershed, even during
periods when the river is closed to
fishing (Leach 2012).
While some water diversions in the
UKTR Chinook salmon ESU are well
monitored, consumptive water use is
often poorly or, in some cases, entirely
undocumented. Groundwater
withdrawals are not monitored or
quantified and water master service is
lacking in much of the UKTR Chinook
salmon ESU. The effects of water
utilization on UKTR Chinook salmon
are not well understood, and few
studies have been developed to quantify
the effects.
Current regulatory mechanisms are
not quantifying or addressing
consumptive water use, land clearing,
chemical spills, and fertilizer and
pesticide use associated with outdoor
cannabis cultivation in the UKTR ESU.
There is no comprehensive drought
plan for the Klamath Basin (including
the Trinity River) or coordinated
strategy that directs actions of resource
management agencies to reduce the
effects of drought or climate change on
Chinook salmon. However, parties to
the Klamath Basin Restoration
Agreement have drafted a Drought Plan
which, if finalized and implemented, is
expected to reduce the effects of drought
on UKTR Chinook salmon in the
mainstem Klamath River. Without
appropriate mechanisms in place to
reduce the effects of drought or climate
change throughout the UKTR ESU, both
remain threats to the ESU.
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Though there are examples of existing
regulatory mechanisms not adequately
protecting Chinook salmon in the UKTR
ESU, Chinook salmon populations in
the ESU have persisted at current levels
for several decades despite these
limitations. Overall, we conclude that it
is unlikely that inadequacies in these
regulatory mechanisms threaten the
continued existence of the ESU.
Other Natural or Man-made Factors
Affecting Its Continued Existence
Natural events like prolonged drought
or catastrophic flooding could pose
significant threats to UKTR Chinook
salmon. Prolonged drought (more than
two years) would magnify already
challenging water quality, disease, and
freshwater habitat conditions for UKTR
Chinook salmon. A decadal scale
drought, such as the one that lasted
from the late 1920s until the late 1930s
(McCabe et al., 2004), would adversely
affect several generations of Chinook
salmon and increase the population’s
extinction risk. Although many shorter
term droughts (two to three years) have
occurred in the recent past, a decadal
scale drought has occurred once in
approximately the past 100 years.
Catastrophic flooding events like
those in 1955, 1964 and 1997 in the
Klamath Basin destroyed a large area of
salmonid habitat, the effects of which
are still presently evident (Cover et al.,
2010). In addition to adverse impacts to
the spawning and rearing of Chinook
salmon during flood events, such events
also degrade habitat conditions by
filling in holding pools, changing
channel hydraulics, reducing the
amount of large woody debris, and
increasing summer stream temperatures
through loss of riparian vegetation (Lisle
1982). While improvements to
watershed conditions have been made
which could help reduce the intensity
of debris flows and sedimentation,
catastrophic flooding poses a risk to
UKTR Chinook salmon, though the
timing and frequency of such events are
difficult to predict.
Climate change projections for the
Klamath Basin predict greater relative
warming in the summer than in other
seasons, drier summers, less snowpack,
lower stream flow, and changes in
predominant vegetation types such that
wildfires are projected to increase in
frequency and area (Woodson et al.,
2011). These predicted changes would
impact UKTR Chinook salmon by
altering fish migration and timing,
decreasing the availability of side
channel and floodplain habitats, the loss
of cool-water refuge areas, higher rates
of disease incidence, lower dissolved
oxygen levels, and potentially earlier,
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longer, and more intense algae blooms
(Woodson et al., 2011). Climate change
will likely exacerbate existing stressors
as well as create new stressors for
salmonids in the Klamath River
˜
(Quinones 2011). A transition to a
warmer climate state and sea surface
warming may be accompanied by
reductions in ocean productivity, which
affects Chinook salmon survival
(Behrenfeld et al., 2006).
Iron Gate Hatchery and Trinity River
Hatchery release roughly 14.2 million
hatchery salmonids into the UKTR basin
annually, of which 10.3 million are
Chinook salmon that we have
determined are part of this ESU.
Releases of hatchery fish can create a
host of ecological (Kostow 2009) and
genetic (Reisenbichler and Rubin, 1999;
Araki et al., 2009) problems that can
result in lower productivity of naturalorigin salmonids (Buhle et al., 2009;
Chilcote et al., 2011). Genetic
information and escapement estimates
indicate straying of hatchery Chinook
salmon adults into tributaries is more
acute for those streams or areas located
closest to the two hatcheries in the
Klamath Basin (Williams et al., 2011).
The extent to which hatchery-origin fish
affect the productivity of UKTR Chinook
salmon is unknown, but given research
on the effect of hatchery fish on the
productivity of natural-origin fish in
other systems (Buhle et al., 2009;
Chilcote et al., 2011), it is likely that
productivity of UKTR Chinook salmon
is impacted at least in those areas near
hatcheries where hatchery-origin fish
are most abundant.
Floods and droughts are natural
phenomena that have affected UKTR
Chinook salmon for millennia. Although
these natural phenomena temporarily
reduce the ability of freshwater habitat
to support UKTR Chinook salmon, they
are unlikely to threaten the continued
existence of the species. Climate change
has the potential to threaten the ESU’s
continued existence, particularly if
precipitation and snowpack markedly
decrease and temperatures substantially
increase. However, the magnitude of
climate driven changes in precipitation
and snowpack in the foreseeable future
and the response of Chinook salmon
populations in the ESU to any such
changes is unknown. Efforts to reform
hatchery practices at Trinity River and
Iron Gate hatcheries are increasing, in
part driven by the recent scientific
review of hatchery operations by the
California Hatchery Scientific Review
Group. If changes in hatchery operations
resulting from this process are
implemented in the future, they are
expected to reduce the potential adverse
effects of hatchery releases on the
E:\FR\FM\02APP1.SGM
02APP1
Federal Register / Vol. 77, No. 63 / Monday, April 2, 2012 / Proposed Rules
12-Month Finding
productivity of naturally spawning
Chinook salmon in this ESU.
sroberts on DSK5SPTVN1PROD with PROPOSALS
Conservation Efforts
When considering the listing of a
species, section 4(b)(1)(A) of the ESA
(16 U.S.C. 1533(b)(1)(A)) requires
consideration of efforts by any State,
foreign nation, or political subdivision
of a State or foreign nation to protect the
species. On March 28, 2003, NMFS and
the USFWS published the final Policy
for Evaluating Conservation Efforts
When Making Listing Decisions (68 FR
15100), that provides guidance on
evaluating current protective efforts
identified in conservation agreements,
conservation plans, management plans,
or similar documents (developed by
Federal agencies, State and local
governments, Tribal governments,
businesses, organizations, and
individuals) that have not yet been
implemented, or that have been
implemented but have not yet
demonstrated effectiveness.
There is a wide range of conservation
efforts focused on salmonids, including
Chinook salmon, in the UKTR ESU. One
important effort is the Trinity River
Restoration Program. This ongoing
program established restoration goals for
spring-run and fall-run Chinook salmon,
identified actions that must be taken to
restore Trinity River Chinook salmon
populations, established quantifiable
performance measures, and
incorporated the principles of adaptive
management (TRRP 2012). Removing
Iron Gate Dam and three other dams
upstream of Iron Gate Dam on the
Klamath River (if the Secretary of the
Interior makes an affirmative
determination under the Klamath
Hydroelectric Settlement Agreement) or
adding fish passage facilities around
these and other upper basin dams on the
Klamath River (if the Secretary of the
Interior does not make an affirmative
determination under the Klamath
Hydroelectric Settlement Agreement)
and associated restoration efforts will
likely improve the viability of UKTR
Chinook salmon (CDFG and DOI 2011),
but there are uncertainties regarding
which of these efforts will be
implemented. Several other efforts are
ongoing in the Klamath Basin; in
particular, improved forest practices,
land management, and purchase of
private land for conservation. Ongoing
research on diseases that afflict UKTR
Chinook salmon is expected to provide
greater understanding of the factors that
contribute to disease infection and
management efforts that can ameliorate
disease impacts in the UKTR ESU.
VerDate Mar<15>2010
15:44 Mar 30, 2012
Jkt 226001
19605
DEPARTMENT OF COMMERCE
We have reviewed the status of the
UKTR Chinook salmon ESU and
considered the best scientific and
commercial data available, and we
conclude that the petitioned action is
not warranted. In reaching this
conclusion, we conclude that spring-run
and fall-run Chinook salmon in the
UKTR Basin constitute a single ESU. We
have considered the conservation efforts
for the ESU. In addition, we have
considered the ESA section 4(a)(1) (16
U.S.C. 1533(a)(1)) factors in the context
of the biological status of the species,
the assessment of the risks posed by
those threats, the possible cumulative
impacts, and the associated
uncertainties. Despite the issues
discussed under those factors,
consistent with the 1998 status review
and listing determination for the UKTR
Chinook salmon ESU, and based on a
comprehensive review of the best
scientific and commercial data currently
available, NMFS concludes the overall
extinction risk of the ESU is considered
to be low over the next 100 years.
Based on these considerations and
others described in this notice, we
conclude that the UKTR Chinook
salmon ESU is not in danger of
extinction throughout all or a significant
portion of its range, nor is it likely to
become so in the foreseeable future.
Therefore, the UKTR Chinook salmon
ESU does not meet the ESA definition
of an endangered or threatened species,
and listing the UKTR Chinook salmon
ESU under the ESA is not warranted at
this time.
National Oceanic and Atmospheric
Administration
References
A complete list of references cited
herein is available upon request (see
ADDRESSES section).
Authority
The authority for this action is the
Endangered Species Act of 1973, as
amended (16 U.S.C. 1531 et seq.).
Dated: March 27, 2012.
Alan D. Risenhoover,
Acting Deputy Assistant Administrator for
Regulatory Programs, National Marine
Fisheries Service.
[FR Doc. 2012–7879 Filed 3–30–12; 8:45 am]
BILLING CODE 3510–22–P
PO 00000
Frm 00041
Fmt 4702
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50 CFR Part 679
RIN 0648–BB77
Fisheries of the Exclusive Economic
Zone Off Alaska; Pacific Salmon
National Marine Fisheries
Service (NMFS), National Oceanic and
Atmospheric Administration (NOAA),
Commerce.
ACTION: Notice of availability of fishery
management plan amendments; request
for comments.
AGENCY:
The North Pacific Fishery
Management Council (Council)
submitted Amendments 10, 11, and 12
to the Fishery Management Plan for the
Salmon Fisheries in the EEZ off the
Coast of Alaska (FMP) to NMFS for
review. If approved, Amendment 10
would provide authority for NMFS to
recover the administrative costs of
processing applications for any future
permits that may be required under this
FMP, except for exempted fishing
permits and prohibited species donation
permits. If approved, Amendment 11
would revise the timeline associated
with the Council’s process to identify
Habitat Areas of Particular Concern so
that the process coincides with the
Essential Fish Habitat (EFH) 5-year
review, revise habitat research priority
objectives, and update EFH
conservation recommendations for, and
the analysis of the impacts of, nonfishing activities. If approved,
Amendment 12 would comprehensively
revise and update the FMP to reflect the
Council’s salmon management policy
and Federal law. Amendments 10, 11,
and 12 are intended to promote the
goals and objectives of the MagnusonStevens Fishery Conservation and
Management Act, the FMP, and other
applicable laws.
DATES: Written comments on the
amendment must be received on or
before 5 p.m., Alaska local time, on June
1, 2012.
ADDRESSES: You may submit comments,
identified by FDMS Docket Number
NOAA–NMFS–2011–0295, by any one
of the following methods:
• Electronic Submissions: Submit all
electronic public comments via the
Federal eRulemaking Portal https://
www.regulations.gov. To submit
comments via the e-Rulemaking Portal,
first click the ‘‘submit a comment’’ icon,
then enter NOAA–NMFS–2011–0295 in
the keyword search. Locate the
SUMMARY:
E:\FR\FM\02APP1.SGM
02APP1
Agencies
[Federal Register Volume 77, Number 63 (Monday, April 2, 2012)]
[Proposed Rules]
[Pages 19597-19605]
From the Federal Register Online via the Government Printing Office [www.gpo.gov]
[FR Doc No: 2012-7879]
[[Page 19597]]
=======================================================================
-----------------------------------------------------------------------
DEPARTMENT OF COMMERCE
National Oceanic and Atmospheric Administration
50 CFR Parts 223 and 224
[Docket No. 110328226-2189-02]
RIN 0648-XA272
Listing Endangered and Threatened Species; 12-Month Finding on a
Petition To List Chinook Salmon in the Upper Klamath and Trinity Rivers
Basin as Threatened or Endangered Under the Endangered Species Act
AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and
Atmospheric Administration (NOAA), Commerce.
ACTION: Status review; notice of finding.
-----------------------------------------------------------------------
SUMMARY: We, NMFS, announce a 12-month finding on a petition to list
the Chinook salmon (Oncorhynchus tshawytscha) in the Upper Klamath and
Trinity Rivers Basin (UKTR) as threatened or endangered and designate
critical habitat under the Endangered Species Act (ESA). We have
reviewed the status of the UKTR Chinook salmon Evolutionarily
Significant Unit (ESU) and considered the best scientific and
commercial data available, and conclude that the petitioned action is
not warranted. In reaching this conclusion, we conclude that spring-run
and fall-run Chinook salmon in the UKTR Basin constitute a single ESU.
Based on a comprehensive review of the best scientific and commercial
data currently available, and consistent with the 1998 status review
and listing determination for the UKTR Chinook salmon ESU, the overall
extinction risk of the ESU is considered to be low over the next 100
years. Based on these considerations and others described in this
notice, we conclude this ESU is not in danger of extinction throughout
all or a significant portion of its range, nor is it likely to become
so in the foreseeable future.
DATES: The finding announced in this notice was made on April 2, 2012.
ADDRESSES: Information used to make this finding is available for
public inspection by appointment during normal business hours at the
office of NMFS Southwest Region, Protected Resources Division, 501 West
Ocean Blvd., Suite 4200, Long Beach, CA 90802. This file includes the
status review report, information provided by the public, and
scientific and commercial information gathered for the status review.
The petition and the status review report can also be found at: https://swr.nmfs.noaa.gov/.
FOR FURTHER INFORMATION CONTACT: Rosalie del Rosario at (562) 980-4085
or Ann Garrett at (707) 825-5175, NMFS, Southwest Region Office; or
Lisa Manning at (301) 713-1401, NMFS, Office of Protected Resources.
SUPPLEMENTARY INFORMATION:
Background
On January 28, 2011, the Secretary of Commerce received a petition
from the Center for Biological Diversity, Oregon Wild, Environmental
Protection Information Center, and The Larch Company (hereafter, the
petitioners), to list Chinook salmon (Oncorhynchus tshawytscha) in the
Upper Klamath Basin under the ESA. Because their request is generally
made in reference to the UKTR ESU of Chinook salmon, we use the
description of that ESU (Myers et al., 1998 and 63 FR 11482; March 9,
1998) as the area in which they are requesting that we list Chinook
salmon, and hereafter refer to that area as the Upper Klamath and
Trinity Rivers basin. The petitioners identified three alternatives for
listing Chinook salmon in the UKTR ESU: (1) Listing spring-run Chinook
salmon in the UKTR ESU as a separate ESU; (2) listing spring-run
Chinook salmon in the UKTR ESU as a distinct population segment within
the currently defined UKTR Chinook salmon ESU; or (3) listing the
currently defined UKTR Chinook salmon ESU, which includes both spring-
run and fall-run populations. The petitioners also requested that we
designate critical habitat for any Chinook salmon populations found to
warrant listing.
After reviewing the petition, the literature cited in the petition,
and other literature and information available in our files, we found
that the petition met the criteria in our implementing regulations at
50 CFR 424.14(b)(2) that are applicable to our 90-day review and
determined that the petition presented substantial information
indicating that the petitioned action may be warranted (76 FR 20302;
April 12, 2011). In that 90-day finding, we explained why we would not
further consider Petitioners' second alternative for listing Chinook
salmon in the UKTR ESU. We described NMFS' Policy on Applying the
Definition of Species Under the Endangered Species Act to Pacific
Salmon (ESU Policy; 56 FR 68612; November 20, 1991), which explains
that a Pacific salmon stock will be considered a distinct population
segment, and hence a ``species'' under the ESA, if it represents an ESU
of the biological species. We also explained the two criteria for
delineating an ESU. Under its second alternative, Petitioners suggest
that, even if we determine that spring-run Chinook salmon in the UKTR
ESU do not meet the criteria to be delineated as a separate ESU under
the ESU Policy, we should apply the two criteria under the U.S. Fish
and Wildlife Service (USFWS) and NMFS Policy Regarding the Recognition
of Distinct Vertebrate Population Segments under the Endangered Species
Act (DPS Policy; 61 FR 4722; February 7, 1996) to determine that
spring-run Chinook salmon in the UKTR ESU are a separate distinct
population segment within the UKTR ESU. As we described in the 90-day
finding, NMFS will continue to apply the criteria in the ESU Policy to
Pacific salmon, which includes Chinook salmon, rather than the criteria
in the DPS Policy. Because the ESU Policy explains under what criteria
Pacific salmon populations will be considered a distinct population
segment, and hence a ``species'' under the ESA, if we evaluate spring-
run Chinook salmon in the UKTR according to the criteria of the ESU
Policy, we will be determining whether spring-run Chinook salmon are
considered a distinct population segment. In the 90-day finding, we
also solicited information pertaining to the species and the issues
raised in the petition. Following publication of our 90-day finding, we
commenced a status review of Chinook salmon in the UKTR ESU. In
response to the 90-day finding we received over 50 written comments
from the public, which we considered in making this 12-month finding.
In support of the status review, NMFS' Southwest Fisheries Science
Center (SWFSC) convened a Biological Review Team (BRT) charged with
compiling and reviewing the best available scientific and commercial
information on Chinook salmon necessary to: (1) Evaluate whether this
information supports the current UKTR Chinook salmon ESU configuration
or the separation of spring-run and fall-run Chinook salmon into
separate ESUs; and (2) assess the biological status of Chinook salmon
populations comprising whichever ESU configuration was best supported
by the available information using NMFS' viable salmonid population
(VSP) framework for the analysis. The BRT was composed of scientists
from the SWFSC and Northwest Fisheries Science Center, USFWS, and U.S.
Forest Service with expertise in the biology, genetics, and ecology of
UKTR ESU Chinook salmon. The BRT compiled, reviewed, and evaluated the
best available scientific and commercial
[[Page 19598]]
information concerning the ESU configuration and biological status of
spring-run and fall-run Chinook salmon populations in the UKTR basin,
including information provided by the petitioners, peer-reviewed
literature, information provided by other parties interested in this
issue, and other information deemed pertinent by the BRT. Following its
review, the BRT prepared a report summarizing the information they
reviewed, their analysis, and conclusions regarding ESU configuration
and biological status (Williams et al., 2011). This report was peer
reviewed by two independent scientific experts who have expertise with
salmon and steelhead issues in the Klamath Basin. One reviewer has
specific expertise on UKTR Chinook salmon genetics, and the other
reviewer has expertise in the ecology of UKTR Chinook salmon. The
reviewers' comments were incorporated into the final report.
If a petition is found to present substantial scientific
information indicating that the petitioned action may be warranted, ESA
section 4(b)(3)(B) (16 U.S.C. 1533(b)(3)(B)) requires the Secretary of
Commerce to make a finding within 12 months of receipt of the petition
(commonly referred to as a 12-month finding) as to whether a petitioned
action is warranted. The Secretary has delegated the authority to make
this finding to the NOAA Assistant Administrator for Fisheries. This
Federal Register notice documents our 12-month finding on this
petition.
Species Background
Information on the biology and life history of UKTR Chinook salmon
is summarized in Myers et al. (1998) and a listing determination for
west coast Chinook salmon (63 FR 11482; March 9, 1998). In 1998, NMFS
completed a status review of the UKTR Chinook salmon ESU and found that
it is comprised of both spring-run and fall-run populations (Myers et
al., 1998), as will be further described in the following section.
Historically, spring-run Chinook salmon were likely the predominant run
type in the Klamath-Trinity River Basin (Myers et al., 1998). Most
spring-run spawning and rearing habitat was blocked by the construction
of dams in the late 1800s and early 1900s in the Klamath River and in
the 1960s in the Trinity River Basin (Myers et al., 1998). As a result
of these and other factors, spring-run populations were considered to
be at less than 10 percent of their historical levels (Myers et al.,
1998). Fall-run populations now comprise the majority of UKTR Chinook
salmon. Most of the spring-run populations are currently distributed
throughout the New, South Fork Trinity, Upper Trinity, and Salmon
rivers. The more widely distributed fall-run Chinook salmon inhabit
most accessible streams in the ESU, though their distribution generally
does not extend as far into the tributary drainages as spring-run
Chinook salmon. As with all Chinook salmon populations south of the
Columbia River, the majority of Chinook salmon in the UKTR ESU exhibit
an ``ocean-type'' life history with juveniles migrating to the ocean
within one year of hatching (Myers et al., 1998). Anadromous salmonids
in California, like UKTR Chinook salmon, exist at the southern edge of
their range along the west coast of North America.
Two hatcheries are operated in the UKTR basin, Iron Gate Hatchery
on the Klamath River and Trinity River Hatchery on the Trinity River,
that annually release large numbers of spring-run and fall-run Chinook
salmon fingerlings and yearlings into the basin. Marine recoveries of
coded-wire tags indicate that hatchery-origin fall- and spring-run
Chinook salmon from these hatcheries have a similar coastal
distribution offshore of California and Oregon (Myers et al., 1998).
Species Delineation
ESA Section 3(16) (16 U.S.C. 1532(16)) defines a ``species'' to
include any subspecies of fish or wildlife or plant, and any distinct
population segment of any species of vertebrate fish or wildlife which
interbreeds when mature. In 1991, we published the ESU Policy (56 FR
58612; November 20, 1991), which describes how we apply the definition
of ``species'' in evaluating Pacific salmon populations for listing
under the ESA. Under this policy, a group of Pacific salmon populations
is considered an ESU if it is (1) reproductively isolated from other
con-specific population units, and (2) represents an important
component in the evolutionary legacy of the species. Under this policy,
an ESU is considered to be a ``distinct population segment'' and thus a
``species'' under the ESA.
ESU Configuration
Based on biological, genetic, and ecological information compiled
and reviewed as part of a previous west coast status review for Chinook
salmon (Myers et al., 1998), we included all spring-run and fall-run
Chinook salmon populations in the Klamath River Basin upstream from the
confluence of the Klamath and Trinity rivers in the UKTR Chinook salmon
ESU (Myers et al., 1998 and 63 FR 11482, 11487; March 9, 1998). The
petitioners contend new information demonstrates that spring-run and
fall-run Chinook salmon in the UKTR ESU qualify as separate ESUs based
on significant and persistent genetic and reproductive isolation
resulting from their different run timing. They further argue that the
genetic differences between spring-run and fall-run Chinook salmon in
the UKTR Chinook salmon ESU are comparable to genetic differences
between spring-run and fall-run Chinook salmon in California's Central
Valley, which are recognized as separate ESUs by NMFS (Myers et al.,
1998 and 70 FR 37160; June 28, 2005). The BRT carefully reviewed the
petition and all other available and relevant information regarding the
ESU configuration of Chinook salmon populations in the UKTR basin and
prepared a report detailing their review and conclusions (Williams et
al., 2011).
Under our ESU policy, Williams et al. (2011) indicate that for
spring-run and fall-run Chinook salmon populations in the UKTR ESU to
be considered separate ESUs, they would need to be substantially
reproductively isolated from each other, and they each must represent
an important component in the evolutionary legacy of the species. Under
the ESU Policy framework, they indicate that the concept of
evolutionary legacy implies there would need to be a monophyletic
pattern in the evolutionary history of each of the two run types within
the UKTR basin, and that spring-run Chinook salmon individuals and
populations would need to be more similar genetically to each other
than to fall-run Chinook salmon individuals and populations.
As discussed in Williams et al. (2011), NMFS has delineated
populations of spring-run and fall-run Chinook salmon in the same basin
as separate ESUs in only two areas: California's Central Valley and in
the interior Columbia River Basin. Chinook salmon populations in the
Central Valley are monophyletic in origin, meaning they descended from
a common ancestor and are more closely related to each other than to
Chinook salmon populations in any other basin on the west coast.
However, there is significant genetic divergence between most naturally
spawning populations of fall-run and spring-run Chinook salmon that
occur in the same rivers in the Central Valley and both run types are
monophyletic rather than polyphyletic. For these and other reasons,
NMFS separated spring-run and fall-run Chinook populations in the
Central Valley into separate ESUs. In the interior Columbia Basin,
spring-run and fall-run Chinook salmon are not
[[Page 19599]]
closely related genetically and represent two very divergent
evolutionary lineages (Myers et al., 1998; Waples et al., 2004), and
therefore were placed into separate ESUs.
In contrast, spring-run and fall-run Chinook salmon populations
found in the coastal basins in California, Oregon, and Washington or
the lower Columbia River basin have not been separated into separate
ESUs despite differences in adult run-timing, life-history strategies,
and other phenotypic characteristics that sometimes accompany genetic
differences (Williams et al., 2011). The primary reason for not
separating fall-run and spring-run Chinook salmon into separate ESUs in
these coastal basins is that their genetic population structure
strongly suggests a polyphyletic pattern of run timing evolution (Myers
et al., 1998; Waples et al., 2004), with spring and fall-run life
histories having evolved on multiple occasions in different watersheds.
Williams et al. (2011) indicate this polyphyletic pattern of run timing
is observed in watersheds adjacent to the Klamath basin and across a
range of watershed sizes in California (Mad River, Redwood Creek and
Eel River) and Oregon (Rogue and Umpqua rivers).
Williams et al. (2011) reviewed new genetic information for Chinook
salmon populations in the UKTR ESU (Banks et al., 2000a; Kinziger et
al., 2008a; Kinziger et al., 2008b; Kinziger et al., In Preparation,),
as well as other studies (Lindley et al., 2004; Waples et al., 2004;
Garza et al., 2007), to assess patterns of genetic population structure
and population differentiation within the UKTR ESU and to compare those
patterns with what has been observed in other basins (e.g., Central
Valley and other coastal watersheds). Kinziger et al. (2008a) found
that there are four genetically differentiated and geographically
separated groups of Chinook salmon populations in the UKTR basin and
that spring-run and fall-run Chinook life histories have evolved
independently and in parallel within both the Salmon and Trinity
rivers. Kinziger et al. (In Preparation) documented the same geographic
population structure reported by Kinziger et al. (2008a) and indicated
the genetic difference between populations was related to geographic
distance and was independent of run timing (i.e., spring-run versus
fall-run). In addition, they found that spring-run and fall-run
populations in the Salmon River were nearly indistinguishable
genetically and that spring and fall-run populations in the South Fork
Trinity were extremely similar to each other and to the Trinity River
hatchery stocks. Banks et al. (2000a) reported they found greater
genetic distances between some fall-run populations than among fall-run
and spring-run populations in the Klamath Basin and concluded that
populations diverged according to geographic location first and life
history second. Banks et al. (2000a) emphasized that this pattern of
geographic differentiation is in strong contrast to that found for
Chinook salmon populations in the Central Valley.
The petition contends that genetic differentiation of Chinook
salmon populations in the UKTR ESU and the Central Valley is of a
similar scale, and that our separation of spring and fall-run Chinook
into separate ESUs in the Central Valley means that spring-run and
fall-run Chinook salmon in the UKTR ESU should also be separated. The
structure of Central Valley spring-run and fall-run Chinook salmon
populations was recently reviewed by Lindley et al. (2004), Good et al.
(2005), and Garza et al. (2007), all of whom supported the general
conclusions that: (1) Central Valley Chinook salmon of all run-types
represent a separate lineage from Chinook salmon populations found in
coastal watersheds; and (2) Central Valley spring-run populations are
monophyletic, with spring-run Chinook salmon from different basins more
closely related to each other than to fall-run Chinook salmon from the
same basin. Lindley et al. (2004), Good et al. (2005), and Garza et al.
(2007) also support the conclusion of Banks et al. (2000a, 2000b) that
the genetic population structure and genetic variation observed in
Chinook salmon populations in the Central Valley is organized by life
history (run-type) rather than geographic location, unlike that which
is observed with the UKTR Chinook salmon populations where Chinook
salmon populations are organized by geographic location rather than
life history type (see Banks et al., 2000a).
Based on a review and evaluation of this information, Williams et
al. (2011) concluded that spring-run and fall-run Chinook salmon
populations in the UKTR ESU constitute a single ESU as originally
defined by Myers et al. (1998), and that the expression of the spring-
run life-history variant is polyphyletic in origin in all of the
populations in the ESU for which data are available.
UKTR spring-run Chinook salmon do not warrant being separated into
a separate ESU because they fail to meet the reproductive isolation and
evolutionary legacy criteria in our ESU Policy for Pacific Salmon. The
available genetic evidence considered by Williams et al. (2011) clearly
demonstrates that spring-run and fall-run Chinook salmon populations in
the UKTR basin are genetically very similar and are not substantially
reproductively isolated from each other. The degree of genetic
differentiation between spring and fall-run Chinook salmon in the UKTR
basin is comparable to that observed in other coastal basins that
support the two run types (Waples et al., 2004) and is much less than
that which has been observed in the Interior Columbia Basin and the
Central Valley where the two run types have been separated into
different ESUs. The available evidence indicating that spring-run and
fall-run Chinook salmon in the UKTR basin are polyphyletic in origin
and have evolved on multiple occasions, together with the ocean type
life-history characteristics exhibited by both run types, suggests that
spring-run Chinook salmon do not represent an important component in
the evolutionary legacy of the species.
Hatchery Stocks
In 2005, NMFS published a policy on how it would consider hatchery-
origin fish when making ESA listing determinations for Pacific salmon
and steelhead (Hatchery Listing Policy; 70 FR 37204; June 28, 2005).
Under this policy, hatchery stocks are considered part of an ESU in
making ESA listing determinations if their level of genetic divergence
relative to local natural populations is no more than what occurs
between natural populations in the ESU. NMFS used this policy and a
previous assessment of all west coast hatchery programs (NMFS 2003) to
determine which hatchery stocks would be considered part of west coast
salmon and steelhead ESUs in a series of listing determinations
published in 2005 and 2006, respectively (70 FR 37160; June 28, 2005
and 71 FR 834; January 5, 2006). The assessment of hatchery stocks
(NMFS 2003) used to support these listing determinations evaluated each
hatchery stock associated with individual salmon and steelhead ESUs to
determine its level of genetic divergence relative to natural
populations. Based on this assessment and application of our Hatchery
Listing Policy (70 FR 37204; June 28, 2005), we determined that
hatchery stocks that were no more than moderately divergent from
natural populations would be considered part of an ESU in making
listing determinations under the ESA.
Iron Gate Hatchery (IGH) produces fall-run Chinook salmon and
releases approximately 6 million fish (fingerlings and yearlings
combined) annually in the upper Klamath River. Trinity River
[[Page 19600]]
Hatchery (TRH) produces both fall-run and spring-run Chinook salmon and
releases approximately 3 million fall-run fish (fingerlings and
yearlings combined) and 1.3 million spring-run fish (fingerlings and
yearlings combined), respectively, annually in the Trinity River. The
SWFSC reviewed and evaluated the available information on broodstock
origin, history, and genetics for these three Chinook salmon hatchery
stocks and concluded that each stock was founded from a local, native
population in the watershed where fish are released and that each stock
is no more than moderately divergent from other local, natural
populations. Moderate divergence in this case means that the hatchery
stocks and local natural populations are no more genetically divergent
than what is observed between closely related natural populations.
Based on this assessment and the criteria in our Hatchery Listing
Policy, we conclude that these three hatchery stocks are part of the
UKTR Chinook salmon ESU.
UKTR Chinook Salmon Biological Status
Williams et al. (2011) assessed the biological status of the UKTR
Chinook salmon ESU using methods similar to those described in Good et
al. (2005). In conducting their review, Williams et al. (2011)
considered the best available information on the species' current
distribution, historical abundance, recent abundance, trends in
abundance, population growth rates, the distribution of hatchery-origin
spawners in natural areas, and fishery exploitation rates. To the
extent possible, Williams et al. (2011) evaluated the available data on
the basis of putative population units that are currently recognized by
management agencies in the Klamath Basin such as sub-basin units (e.g.,
Scott River) or specific geographic areas (e.g., upper Klamath River
mainstem). Wherever possible, spring-run and fall-run Chinook salmon
populations were assessed separately within specific population units.
The following discussion summarizes the biological status assessment of
UKTR Chinook salmon from Williams et al. (2011).
Current Distribution and Historical Abundance
Williams et al. (2011) concluded there have been no changes to the
distribution of UKTR Chinook salmon since the review of Myers et al.
(1998). Williams et al. (2011) summarized information from Myers et al.
(1998) and the California Department of Fish and Game (CDFG 1965) that
indicates the historical abundance of Chinook salmon in the UKTR ESU
was estimated to be approximately 130,000 adults in 1912 (based on peak
cannery pack of 18,000 cases) and 168,000 adults in 1963, with the 1963
abundance estimate from CDFG split evenly between Klamath and Trinity
rivers.
Recent Abundance, Trends in Abundance, and Population Growth Rate
As reported in Williams et al. (2011), the numbers of adults
returning to spawning grounds (e.g., Upper Klamath, Trinity, Scott,
Salmon, and Shasta rivers and smaller tributaries) and returns to Iron
Gate and Trinity River hatcheries are monitored using a variety of
methods by a combination of State, Federal, and Tribal agencies.
Williams et al. (2011) characterized the recent spawner abundance in a
manner that was consistent with the previous coast-wide salmon and
steelhead status reviews (Good et al., 2005). Based on this analysis,
recent spawner abundance estimates of both fall-run and spring-run
Chinook salmon returning to spawn in natural areas are generally low
compared to historical estimates of abundance; however, the majority of
populations have not declined in spawner abundance over the past 30
years (i.e., from the late 1970s and early 1980s to 2010) except for
the Scott and Shasta rivers where there have been modest declines.
While the BRT considered and presented both short- and long-term
population growth rate, to be consistent with Good et al. (2005), the
BRT stated that they viewed population growth rates based on just 13
years of data with caution given the highly variable population
dynamics typical of salmon populations and influences of shifting
environmental conditions. Of most interest to the BRT were the long-
term population growth rates of the populations individually and the
ESU as a whole.
Williams et al., (2011) reported that short-term trends in spawner
abundance declined slightly for about half of the population components
over the past 13 years, and that fall-run Chinook salmon returns to
Trinity River hatchery have been more variable than returns of fall-run
Chinook salmon to Iron Gate hatchery. Williams et al. (2011) found that
hatchery returns did not mirror (or did not track) escapement to
natural spawning areas. Overall, Williams et al. (2011) concluded that
there has been little change in the abundance levels, trends in
abundance, or population growth rates since the review by Myers et al.
(1998). They noted, however, as did Myers et al. (1998), that the
recent abundance levels of some populations are low, especially in the
context of historical abundance estimates. This was most evident with
respect to two of the three spring-run population units that were
evaluated (Salmon River and South Fork Trinity River).
Hatchery-origin Spawners in Natural Areas
Williams et al. (2011) evaluated the occurrence of hatchery-origin
Chinook salmon spawners in several natural spawning areas (i.e., Bogus
Creek and the Upper Klamath, Shasta, Scott, Salmon, Trinity, and South
Fork Trinity rivers) over the past decade and concluded that the
majority of hatchery-origin Chinook salmon that stray to natural areas
do so in areas adjacent to the hatcheries. This is not unexpected since
both hatcheries release fingerlings and yearlings ``on-site,'' as
opposed to other locations further downstream in the basin. This
finding was supported by recent genetic analyses from Kinziger et al.
(In Preparation) that found strong evidence for genetic isolation-by-
distance that is inconsistent with hatchery-origin fish straying in
large numbers throughout the basin.
Extinction Risk Assessment
Williams et al. (2011) used a risk matrix approach to assess the
viable salmonid population (VSP) criteria (i.e., abundance,
productivity, spatial structure, and diversity) for the UKTR Chinook
salmon ESU. This approach was used in the most recent west coast salmon
and steelhead status reviews (Good et al., 2005) and the details of the
methodology are described in both Williams et al. (2011) and Good et
al. (2005). Based on this risk matrix approach, Williams et al. (2011)
concluded that the UKTR Chinook salmon ESU was at a relatively low risk
of extinction based on abundance, growth rate and productivity, and
spatial structure and connectivity; and the UKTR Chinook salmon ESU was
at a moderate risk of extinction based on diversity. The following
sections briefly summarize the conclusions of Williams et al. (2011)
regarding each of the four VSP criteria.
Abundance
Abundance of spawning populations in the ESU appear to have been
fairly stable for the past 30 years and since the review by Myers et
al. (1998). Although current levels of abundance are generally low
compared with historical estimates of abundance, the current abundance
levels do not constitute a major risk in terms of ESU extinction. Long-
term population growth rates are positive for most population
[[Page 19601]]
components that were analyzed, indicating they are not currently in
decline and, in general, most populations are large enough to avoid
genetic problems.
Growth Rate and Productivity
There is no indication that growth rates or productivity of
populations have changed since the review of Myers et al. (1998);
however, the impact of hatchery-origin fish in some locations and in
some years is uncertain and is a concern. Based on the available
information, hatchery influence appeared to be most concentrated in
areas adjacent to the two hatcheries, and spawning survey information
(i.e., estimates of adipose fin-clipped fish) and genetic analyses
suggest there is a low hatchery fish influence elsewhere in the ESU.
Spatial Structure and Connectivity
There is a broad geographic distribution of fall-run Chinook salmon
throughout the UKTR ESU, with genetic data (i.e., isolation-by-distance
information) indicating that there is connectivity among populations.
There are no cases where fall-run Chinook were found to be locally
extirpated and the spatial distribution of fall-run Chinook salmon in
the UKTR ESU indicates that it currently occupies all accessible
available habitat. Conversely, spring-run Chinook population numbers
are low, with few if any spring-run fish recently observed in the Scott
and Shasta rivers. The geographic distribution of spring-run Chinook
salmon is of some concern, with possible extirpations perhaps
reflecting the effects of low water years and habitat accessibility.
Diversity
Although there are extant spring-run and fall-run Chinook salmon
populations in the basin, the low spawner abundance in spring-run
populations continues to be a concern, as it was in the previous review
(Myers et al., 1998). In addition to the continued presence of both the
spring-run and fall-run life-history types in the basin, the presence
of large sub-yearlings in the Shasta River was considered evidence of
continuing life history diversity in the ESU. Hatchery influence in
natural spawning areas near the two hatcheries is a concern because of
its possible impacts on the productivity and diversity of natural
spawning Chinook salmon populations in those areas, but hatchery-origin
fish appear to be most concentrated in relatively small areas located
near the two hatcheries rather than elsewhere throughout the geographic
area occupied by the ESU.
To assess the overall extinction risk of the UKTR Chinook salmon
ESU, Williams et al. (2011) employed a methodology (the Forest
Ecosystem Management Assessment Team, (FEMAT) approach) that has been
used in previous west coast salmon status reviews (see Good et al.,
2005). Under this approach, the members of the BRT made informed
professional judgments about whether the UKTR Chinook salmon ESU was
presently in one of three extinction risk categories: ``high risk,''
``moderate risk,'' and ``neither at high risk or moderate risk'' (low
risk) based on the results of the VSP criteria assessment and other
relevant information on the status of the ESU as discussed previously.
In its assessment, the BRT members interpreted the high risk category
as ``a greater than 5% risk of extinction within 100 years'', and the
moderate risk category as ``more likely than not risk of moving into
the high risk category within 30-80 years.'' Beyond these time
horizons, the BRT members concluded it was difficult with any degree of
confidence to project ESU extinction risk. Based on this assessment
process, Williams et al. (2011) concluded that the UKTR Chinook salmon
ESU was at a low risk of extinction in the next 100 years, although the
BRT did express some uncertainty as to whether the ESU was at low risk
or moderate risk of extinction (Table 5, Williams et al., 2011).
Under NMFS' Hatchery Listing Policy, any hatchery stocks that are
part of an ESU must be considered in status assessments for the ESU if
it is being considered for possible listing (70 FR 37204; June 28,
2005). As discussed in the policy, any status assessment of an ESU
which includes hatchery stocks should evaluate the manner in which the
hatchery stocks contribute to conserving natural populations by
considering their impact on the VSP criteria for natural populations
comprising the ESU. As noted previously, the SWFSC determined that the
fall-run Chinook salmon stock from IGH and the spring-run and fall-run
Chinook salmon stocks from TRH are no more than moderately diverged
from the local, natural populations, and as a result NMFS has concluded
that these three hatchery stocks are part of the UKTR Chinook salmon
ESU. Based on the hatchery operations and releases, as well as the
assessment of hatchery-origin fish spawning in natural areas presented
by Williams et al. (2011), we conclude that these three hatchery
stocks: (1) Slightly reduce ESU extinction risk by increasing abundance
of Chinook salmon in the UKTR ESU; (2) have a neutral or uncertain
effect on ESU extinction risk associated with productivity and spatial
structure because hatchery origin fish spawn in natural areas primarily
near the hatcheries and naturally produced Chinook salmon populations
are widely distributed throughout the basin; and (3) have a slightly
increased effect on ESU extinction risk associated with diversity
because of the potential impacts of hatchery fish on naturally spawning
populations near the hatcheries. Overall, we conclude that including
these three hatchery stocks in the UKTR Chinook salmon ESU does not
appreciably alter the Williams et al. (2011) assessment of the VSP
status of the UKTR Chinook salmon ESU or its extinction risk.
As part of their status review, Williams et al. (2011) assessed
whether there are portions of the UKTR Chinook Salmon ESU that would
constitute a significant portion of its range. In making this
assessment they considered a portion of the range to be significant if
its contribution to the overall viability of the ESU was so important
that, without it, the ESU would be in danger of extinction. The
geographical range of the ESU they considered in their assessment was
the current geographical distribution of Chinook salmon in the UKTR
ESU, and thus they did not consider inaccessible portions of the
historical range of Chinook salmon upstream of dams. These
considerations are consistent with interpretations and principles in
the NMFS and USFWS Draft Policy on Interpretation of the Phrase
``Significant Portion of Its Range'' in the Endangered Species Act's
Definitions of ``Endangered Species'' and ``Threatened Species,'' which
we consider as nonbinding guidance in making listing determinations
until a final policy is published (76 FR 76987; December 9, 2011).
Lastly, they assumed that a significant portion of the ESU's range
could be a geographic sub-unit of the current ESU (e.g., the Salmon
River) or a life-history variant (spring-run or fall-run life-history
type), but based on the petition, focused their assessment on whether
the spring-run Chinook salmon component of the UKTR ESU constituted a
significant portion of the ESU's range.
Williams et al. (2011) concluded that Chinook salmon are
distributed broadly throughout the UKTR ESU and that there is
connectivity among the component populations in the basin based on the
available genetic information. Within the current geographic range of
the ESU, they did
[[Page 19602]]
not find any situations where there was substantial unused habitat
(i.e., extirpations) and concluded the spatial distribution of Chinook
salmon in the ESU appeared to be appropriate given the current
condition of the habitat. Williams et al. (2011) expressed concern
about the overall status of spring-run Chinook salmon populations in
the UKTR Chinook salmon ESU, but they did not conclude that these
populations were at immediate risk of extinction (i.e., within the
timeframe of generations as opposed to tens of generations) or that
their demographic status posed an immediate risk of extinction to the
ESU. The complete loss of spring-run Chinook salmon is unlikely in the
foreseeable future, but if that occurred Williams et al. (2011)
indicated it would reduce the viability of the ESU by reducing its
overall diversity. Despite such a reduction in the viability of the
ESU, the BRT concluded that the complete loss of spring-run would not
result in an immediate risk of extinction to the UKTR Chinook Salmon
ESU. Based on these considerations, we conclude that spring-run Chinook
salmon do not constitute a significant portion of the range of the UKTR
Chinook salmon ESU.
Summary of Factors Affecting the UKTR Chinook Salmon ESU
Section 4(a)(1) of the ESA (16 U.S.C. 1533(a)(1)) and NMFS'
implementing regulations (50 CFR Part 424) set forth factors and
procedures for listing species. NMFS must determine if a species is
endangered or threatened based upon any one or a combination of the
following factors: (1) The present or threatened destruction,
modification, or curtailment of its habitat or range; (2) its
overutilization for commercial, recreational, scientific, or
educational purposes; (3) disease or predation; (4) inadequacy of
existing regulatory mechanisms; or (5) other natural or manmade factors
affecting its continued existence. NMFS has previously reviewed and
evaluated these listing factors for west coast Chinook salmon,
including those populations that comprise the UKTR Chinook salmon ESU
(63 FR 11482, March 9, 1998; and NMFS 1998). These reviews have
identified a wide range of factors that have adversely impacted Chinook
salmon and their habitat on the west coast as well as in the UKTR ESU.
The following discussion is based on those reviews and other more
recent sources of information.
Present or Threatened Destruction, Modification, or Curtailment of the
Species' Habitat or Range
Previous reviews as cited above have identified a range of
historical and ongoing land management activities and practices that
adversely impact freshwater habitat used by Chinook salmon in the UKTR
ESU, including construction of dams and other barriers that block
access to historical habitat, water diversions, agriculture, timber
harvest, road construction, grazing, and mining. The impacts associated
with these activities have altered or in some cases eliminated habitat
for Chinook salmon. A more detailed discussion of the impacts
associated with these activities can be found in Nehlsen et al. (1991),
Moyle (2002), and NRC (2004).
Within the freshwater range of the UKTR ESU there are two important
migration barriers that block access to historical spawning and rearing
habitat: Iron Gate Dam on the Klamath River (DOI and CDFG 2011) and
Lewiston Dam on the Trinity River (DOI 2000). Many of the streams
blocked by these dams were high quality snowmelt-driven tributaries or
groundwater dominated streams that supported adult spring-run and fall-
run Chinook salmon (Moyle 2002). The presence of these dams has
impacted the production of both spring-run and fall-run Chinook salmon
in the UKTR ESU, but they have had a greater impact on the distribution
and abundance of spring-run Chinook salmon (63 FR 11482; March 9,
1998).
Water diversion and agricultural activities in the Klamath River
and Trinity River basins have altered the timing and volume of flows in
streams, reduced habitat availability, reduced water quality, and
contributed to the reduced productivity of natural-origin Chinook
salmon (NMFS 2010; DOI 2000). Stream water is diverted for consumptive
use in the Upper Klamath Basin, in the Shasta and Scott River valleys,
and from the Trinity River into other river basins (e.g., Rogue River,
Sacramento River). Substantial water diversions, particularly during
dry water years, can nearly dewater sections of rivers, creating
barriers to Chinook salmon migration (e.g., Scott River), reducing the
amount of available juvenile rearing habitat, and contributing to poor
water quality. The Klamath River is impaired by a variety of water
quality problems, including temperature, dissolved oxygen, nutrients,
organic matter, and microcystin (NCRWQCB 2010), all of which can
adversely impact Chinook salmon.
Historical and ongoing timber harvest activities in the UKTR ESU
have reduced habitat quality for Chinook salmon (Moyle 2002). Timber
harvest can result in the loss of riparian vegetation, increased stream
sedimentation, warmer water temperatures, reduced availability of large
woody debris, increased peak runoff events, and simplified stream
habitat, including filling of pools (Chamberlain et al., 1991). Road
systems used to access timber areas cause high rates of erosion,
landslides and in some cases block access to habitat when poorly
designed culverts are used in road-stream crossings (Chamberlain et
al., 1991). While mining in the UKTR ESU has been significantly
curtailed in the past several decades, some lingering effects from
tailings piles and other disturbances remain. Currently, there is a
moratorium on suction dredge gold mining in California, which limits
the impact of this activity on UKTR Chinook salmon habitat. The impacts
to UKTR Chinook salmon from land management activities that were
identified in Myers et al. (1998) and NMFS' 1998 listing determination
for this ESU (63 FR 11482; March 9, 1998) continue today, with a few
exceptions as noted above. Chinook salmon in the UKTR ESU have
persisted for several decades at relatively stable levels of abundance,
despite the existence of these threats to freshwater habitat, and,
therefore, it is unlikely that destruction or modification of habitat
or curtailment of the species' range will threaten its continued
existence now or in the foreseeable future.
Overutilization for Commercial, Recreational, Scientific, or
Educational Purposes
UKTR Chinook salmon are harvested in commercial and recreational
fisheries in the ocean as well as Tribal and recreational fisheries in
the Klamath Basin. Ocean harvest of Klamath Basin fall-run Chinook
salmon is coordinated by the Pacific Fishery Management Council (PFMC),
Tribal harvest is managed by the individual tribes in the Klamath
Basin, and in-river recreational fisheries are managed by the
California Fish and Game Commission. From the mid-1980s through 2011,
the PFMC managed the Klamath Basin fall-run Chinook salmon fishery with
twin conservation objectives aimed at not surpassing a maximum total
exploitation rate of 67 percent of projected returning natural adult
spawners and achieving a minimum of at least 35,000 natural area adult
spawners, with occasional allowances for smaller harvests when
projected
[[Page 19603]]
returns were less than 35,000 adults (i.e., de minimis fisheries; PFMC
2011). The PFMC Salmon Fishery Management Plan was amended in 2011 and,
beginning in 2012, the maximum allowable exploitation rate will be 68
percent of projected natural area adult spawners, subject to a minimum
escapement of 40,700 natural area adult spawners, with allowances for
de minimis fisheries when the stock is at low abundance (PFMC and NMFS
2011). The minimum natural area spawner escapement of 40,700 adults is
the best estimate of an escapement level that will produce maximum
sustainable yield (Salmon Technical Team 2005). Fisheries have very
rarely resulted in exploitation rates meeting or exceeding the maximum
allowable level of 67 percent and the observed total exploitation rate
on Klamath Basin fall-run Chinook salmon has varied between
approximately 20 and 65 percent since the late 1990s (Williams et al.,
2011).
Ocean exploitation rates for Klamath Basin spring-run Chinook
salmon are not available (Williams et al., 2011). However, restrictions
on ocean fisheries that have been implemented as a result of the status
of Klamath Basin fall-run Chinook salmon, Sacramento River fall-run
Chinook salmon, and ESA listed salmon stocks also protect UKTR spring-
run Chinook salmon, given the general overlap in the ocean distribution
of these other stocks and UKTR spring-run Chinook salmon (Williams et
al., 2011). In their final year of life, fall-run Chinook salmon leave
the ocean and return to the river for spawning later in the year than
do spring-run Chinook salmon. As a consequence, fall-run fish are
exposed to the summer ocean fishery in their final year of life,
whereas spring-run are not. Thus, the ocean exploitation rate on
Klamath Basin spring-run Chinook salmon is considered to be lower than
on Klamath Basin fall-run Chinook salmon, because of their lack of
exposure to the summer ocean fishery in their final year of life.
In-river recreational fishery exploitation rates in the Klamath
Basin for spring-run Chinook salmon are unknown. Williams et al. (2011)
indicated that in-river Tribal exploitation rates in recent years have
generally been comparable to or slightly greater than those reported by
Myers et al. (1998), particularly for spring-run Chinook salmon. To
reduce impacts on spring-run adult escapement, the Yurok Tribe has
enacted voluntary conservation measures since the early 1990s. The most
recent example is the closure of the gillnet fishery three days per
week and the prohibition of commercial fishing during the 2011 spring-
run Chinook salmon migration period. Overall, impacts from commercial,
recreational, and Tribal harvest do not appear to have changed
significantly since they were last reviewed in 1998 (Myers et al.,
1998).
Because of the relatively robust regulatory controls on the harvest
and other uses of Chinook salmon in the UKTR ESU and the reductions in
overall harvest from historic levels, overutilization of Chinook salmon
in this ESU for commercial, recreational or scientific purposes is
unlikely to threaten the ESU's continued existence now or in the
foreseeable future.
Disease or Predation
Diseases that cause mortality to UKTR Chinook salmon adults and
juveniles are prevalent in the Klamath Basin, particularly in the
mainstem Klamath River. In the fall of 2002, over 30,000 fall-run
Chinook salmon died in the Klamath River as a result of low water
discharge, large run size, high water temperatures, and an epizootic
outbreak of the bacterium Flavobacterium columnare (columnaris) and the
parasite Ichthyopthirius multifilis (ich) (CDFG 2004). Since that
event, there have been substantial efforts to reduce the likelihood
that such events will occur in the future or to minimize the impacts of
any future event (CDFG 2011). An interagency task force has been
organized to provide early warning and response to a potential fish
kill that would entail requesting water releases from either Iron Gate
or Lewiston dams if Klamath River flows fall below a specified minimum
threshold during the adult fall-run Chinook salmon migration period.
An area of high parasite infections exists in the upper Klamath
River from its confluence with the Shasta River downstream to the Seiad
Valley (Foote et al., 2011). Infection by Ceratomyxa shasta can be a
significant mortality factor for juvenile Chinook salmon; the average
infection rate for fish in the Klamath River upstream from its
confluence with the Trinity River was 30 percent from 2004-2008, and 54
percent in 2009 (True et al., 2011). Because high water temperature is
one of the primary drivers for disease infection rates (Foote et al.,
2011), increased water temperatures associated with drought, climate
change, and human activities (e.g., water diversions) are predicted to
increase disease rates in the future (Woodson et al., 2011).
Naturally-produced Chinook salmon fry are preyed upon by hatchery
steelhead in the upper Trinity River (Naman and Sharpe 2011). There is
limited information on pinniped predation of Chinook salmon in the UKTR
ESU, but one study from the Klamath River estuary in 1997 estimated
that over 8 percent of the fall-run Chinook salmon escapement was
consumed by pinnipeds (Hillemeier 1999).
Diseases are unlikely to threaten the ESU's continued existence now
or in the foreseeable future, unless climate change in the basin causes
a substantial increase in disease related mortality. However, the
magnitude of any such effects is difficult to predict with any degree
of certainty. Predation is unlikely to threaten the ESU's continued
existence now or in the foreseeable future.
Inadequacy of Existing Regulatory Mechanisms
Forest practices, managed by the State and the Federal Government,
have generally improved since 1998, although some practices do not
adequately protect Chinook salmon or other salmonids. About 68 percent
of the land within the UKTR ESU is managed by the U.S. Forest Service
(USFS) and the Bureau of Land Management (BLM) under the Northwest
Forest Plan (NWFP). The NWFP and its associated Aquatic Conservation
Strategy (ACS), which was designed to protect salmon and steelhead
habitat by maintaining and restoring ecosystem health at watershed and
landscape scales, has improved the landscape through changes in timber
harvesting and road maintenance and construction. A recent report
assessing the overall effectiveness of the NWFP indicates that there
have been positive changes in watershed condition scores throughout the
range of the NWFP, with trends indicating small increases in vegetation
scores (Lanigan et al., 2011). While overall road density changed only
slightly across the area of the NWFP, road densities remain high in
some portions of the UKTR Chinook salmon ESU (e.g., South Fork Trinity
River).
Since 1998, NMFS has actively engaged with the State Board of
Forestry to facilitate improvements in California's state forest
practice rules to improve aquatic habitat protection. The Board of
Forestry has made some improvements to the rules. However, the current
forest practice rules will continue to be considered inadequate for
anadromous salmonids until the full suite of needed protections
outlined by NMFS in public hearings and the Northern California
steelhead listing (65 FR 36074; June 7, 2000) are adopted.
Enforcement of State fishery regulations and Tribal trust fishing
rights is a challenge within the UKTR
[[Page 19604]]
ESU. The Yurok Tribe and Hoopa Valley Tribe have Federally reserved
fishing rights, but the Federally reserved salmon and steelhead fishing
rights of other Tribes have not been established. Under their Federally
reserved rights, the Yurok Tribe and Hoopa Valley Tribe are entitled to
a moderate living standard or 50 percent of the harvest of Klamath-
Trinity Basin salmon. However, members of the Karuk Tribe are
authorized to fish with traditional hand-held dip nets at their
indigenous fishing site at Ishi Pishi Falls under State fishing
regulations. Thus, the management of in-river harvest of salmonids is
shared between Federal, Tribal, and State agencies and depends upon
whether the Tribe has a Federally reserved fishing right or is
harvesting salmon under State fishing regulations. Monitoring and
enforcement of in-river harvest is hampered by the complexity of the
regulations governing the in-river fishery. Although the extent to
which illegal harvest is a problem is unclear, illegal harvest of UKTR
Chinook salmon has been documented. For example, State law enforcement
officers have confiscated gill nets and fishing rods in the New River
watershed, even during periods when the river is closed to fishing
(Leach 2012).
While some water diversions in the UKTR Chinook salmon ESU are well
monitored, consumptive water use is often poorly or, in some cases,
entirely undocumented. Groundwater withdrawals are not monitored or
quantified and water master service is lacking in much of the UKTR
Chinook salmon ESU. The effects of water utilization on UKTR Chinook
salmon are not well understood, and few studies have been developed to
quantify the effects.
Current regulatory mechanisms are not quantifying or addressing
consumptive water use, land clearing, chemical spills, and fertilizer
and pesticide use associated with outdoor cannabis cultivation in the
UKTR ESU.
There is no comprehensive drought plan for the Klamath Basin
(including the Trinity River) or coordinated strategy that directs
actions of resource management agencies to reduce the effects of
drought or climate change on Chinook salmon. However, parties to the
Klamath Basin Restoration Agreement have drafted a Drought Plan which,
if finalized and implemented, is expected to reduce the effects of
drought on UKTR Chinook salmon in the mainstem Klamath River. Without
appropriate mechanisms in place to reduce the effects of drought or
climate change throughout the UKTR ESU, both remain threats to the ESU.
Though there are examples of existing regulatory mechanisms not
adequately protecting Chinook salmon in the UKTR ESU, Chinook salmon
populations in the ESU have persisted at current levels for several
decades despite these limitations. Overall, we conclude that it is
unlikely that inadequacies in these regulatory mechanisms threaten the
continued existence of the ESU.
Other Natural or Man-made Factors Affecting Its Continued Existence
Natural events like prolonged drought or catastrophic flooding
could pose significant threats to UKTR Chinook salmon. Prolonged
drought (more than two years) would magnify already challenging water
quality, disease, and freshwater habitat conditions for UKTR Chinook
salmon. A decadal scale drought, such as the one that lasted from the
late 1920s until the late 1930s (McCabe et al., 2004), would adversely
affect several generations of Chinook salmon and increase the
population's extinction risk. Although many shorter term droughts (two
to three years) have occurred in the recent past, a decadal scale
drought has occurred once in approximately the past 100 years.
Catastrophic flooding events like those in 1955, 1964 and 1997 in
the Klamath Basin destroyed a large area of salmonid habitat, the
effects of which are still presently evident (Cover et al., 2010). In
addition to adverse impacts to the spawning and rearing of Chinook
salmon during flood events, such events also degrade habitat conditions
by filling in holding pools, changing channel hydraulics, reducing the
amount of large woody debris, and increasing summer stream temperatures
through loss of riparian vegetation (Lisle 1982). While improvements to
watershed conditions have been made which could help reduce the
intensity of debris flows and sedimentation, catastrophic flooding
poses a risk to UKTR Chinook salmon, though the timing and frequency of
such events are difficult to predict.
Climate change projections for the Klamath Basin predict greater
relative warming in the summer than in other seasons, drier summers,
less snowpack, lower stream flow, and changes in predominant vegetation
types such that wildfires are projected to increase in frequency and
area (Woodson et al., 2011). These predicted changes would impact UKTR
Chinook salmon by altering fish migration and timing, decreasing the
availability of side channel and floodplain habitats, the loss of cool-
water refuge areas, higher rates of disease incidence, lower dissolved
oxygen levels, and potentially earlier, longer, and more intense algae
blooms (Woodson et al., 2011). Climate change will likely exacerbate
existing stressors as well as create new stressors for salmonids in the
Klamath River (Qui[ntilde]ones 2011). A transition to a warmer climate
state and sea surface warming may be accompanied by reductions in ocean
productivity, which affects Chinook salmon survival (Behrenfeld et al.,
2006).
Iron Gate Hatchery and Trinity River Hatchery release roughly 14.2
million hatchery salmonids into the UKTR basin annually, of which 10.3
million are Chinook salmon that we have determined are part of this
ESU. Releases of hatchery fish can create a host of ecological (Kostow
2009) and genetic (Reisenbichler and Rubin, 1999; Araki et al., 2009)
problems that can result in lower productivity of natural-origin
salmonids (Buhle et al., 2009; Chilcote et al., 2011). Genetic
information and escapement estimates indicate straying of hatchery
Chinook salmon adults into tributaries is more acute for those streams
or areas located closest to the two hatcheries in the Klamath Basin
(Williams et al., 2011). The extent to which hatchery-origin fish
affect the productivity of UKTR Chinook salmon is unknown, but given
research on the effect of hatchery fish on the productivity of natural-
origin fish in other systems (Buhle et al., 2009; Chilcote et al.,
2011), it is likely that productivity of UKTR Chinook salmon is
impacted at least in those areas near hatcheries where hatchery-origin
fish are most abundant.
Floods and droughts are natural phenomena that have affected UKTR
Chinook salmon for millennia. Although these natural phenomena
temporarily reduce the ability of freshwater habitat to support UKTR
Chinook salmon, they are unlikely to threaten the continued existence
of the species. Climate change has the potential to threaten the ESU's
continued existence, particularly if precipitation and snowpack
markedly decrease and temperatures substantially increase. However, the
magnitude of climate driven changes in precipitation and snowpack in
the foreseeable future and the response of Chinook salmon populations
in the ESU to any such changes is unknown. Efforts to reform hatchery
practices at Trinity River and Iron Gate hatcheries are increasing, in
part driven by the recent scientific review of hatchery operations by
the California Hatchery Scientific Review Group. If changes in hatchery
operations resulting from this process are implemented in the future,
they are expected to reduce the potential adverse effects of hatchery
releases on the
[[Page 19605]]
productivity of naturally spawning Chinook salmon in this ESU.
Conservation Efforts
When considering the listing of a species, section 4(b)(1)(A) of
the ESA (16 U.S.C. 1533(b)(1)(A)) requires consideration of efforts by
any State, foreign nation, or political subdivision of a State or
foreign nation to protect the species. On March 28, 2003, NMFS and the
USFWS published the final Policy for Evaluating Conservation Efforts
When Making Listing Decisions (68 FR 15100), that provides guidance on
evaluating current protective efforts identified in conservation
agreements, conservation plans, management plans, or similar documents
(developed by Federal agencies, State and local governments, Tribal
governments, businesses, organizations, and individuals) that have not
yet been implemented, or that have been implemented but have not yet
demonstrated effectiveness.
There is a wide range of conservation efforts focused on salmonids,
including Chinook salmon, in the UKTR ESU. One important effort is the
Trinity River Restoration Program. This ongoing program established
restoration goals for spring-run and fall-run Chinook salmon,
identified actions that must be taken to restore Trinity River Chinook
salmon populations, established quantifiable performance measures, and
incorporated the principles of adaptive management (TRRP 2012).
Removing Iron Gate Dam and three other dams upstream of Iron Gate Dam
on the Klamath River (if the Secretary of the Interior makes an
affirmative determination under the Klamath Hydroelectric Settlement
Agreement) or adding fish passage facilities around these and other
upper basin dams on the Klamath River (if the Secretary of the Interior
does not make an affirmative determination under the Klamath
Hydroelectric Settlement Agreement) and associated restoration efforts
will likely improve the viability of UKTR Chinook salmon (CDFG and DOI
2011), but there are uncertainties regarding which of these efforts
will be implemented. Several other efforts are ongoing in the Klamath
Basin; in particular, improved forest practices, land management, and
purchase of private land for conservation. Ongoing research on diseases
that afflict UKTR Chinook salmon is expected to provide greater
understanding of the factors that contribute to disease infection and
management efforts that can ameliorate disease impacts in the UKTR ESU.
12-Month Finding
We have reviewed the status of the UKTR Chinook salmon ESU and
considered the best scientific and commercial data available, and we
conclude that the petitioned action is not warranted. In reaching this
conclusion, we conclude that spring-run and fall-run Chinook salmon in
the UKTR Basin constitute a single ESU. We have considered the
conservation efforts for the ESU. In addition, we have considered the
ESA section 4(a)(1) (16 U.S.C. 1533(a)(1)) factors in the context of
the biological status of the species, the assessment of the risks posed
by those threats, the possible cumulative impacts, and the associated
uncertainties. Despite the issues discussed under those factors,
consistent with the 1998 status review and listing determination for
the UKTR Chinook salmon ESU, and based on a comprehensive review of the
best scientific and commercial data currently available, NMFS concludes
the overall extinction risk of the ESU is considered to be low over the
next 100 years.
Based on these considerations and others described in this notice,
we conclude that the UKTR Chinook salmon ESU is not in danger of
extinction throughout all or a significant portion of its range, nor is
it likely to become so in the foreseeable future. Therefore, the UKTR
Chinook salmon ESU does not meet the ESA definition of an endangered or
threatened species, and listing the UKTR Chinook salmon ESU under the
ESA is not warranted at this time.
References
A complete list of references cited herein is available upon
request (see ADDRESSES section).
Authority
The authority for this action is the Endangered Species Act of
1973, as amended (16 U.S.C. 1531 et seq.).
Dated: March 27, 2012.
Alan D. Risenhoover,
Acting Deputy Assistant Administrator for Regulatory Programs, National
Marine Fisheries Service.
[FR Doc. 2012-7879 Filed 3-30-12; 8:45 am]
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