Screening Framework Guidance for Providers of Synthetic Double-Stranded DNA, 62820-62832 [2010-25728]
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DEPARTMENT OF HEALTH AND
HUMAN SERVICES
Office of the Secretary
Screening Framework Guidance for
Providers of Synthetic DoubleStranded DNA
Department of Health and
Human Services, Office of the Secretary.
ACTION: Notice.
AGENCY:
Authority: Public Health Service Act, 42
U.S.C. 241, Section 301; HSPD–10.
To reduce the risk that
individuals with ill intent may exploit
the application of nucleic acid synthesis
SUMMARY:
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technology to obtain genetic material
derived from or encoding Select Agents
or Toxins and, as applicable, agents on
the Export Administration Regulations’
(EAR’s) Commerce Control List (CCL),
the U.S. Government has developed
Guidance that provides a framework for
screening synthetic double-stranded
DNA (dsDNA). This document, the
Screening Framework Guidance for
Providers of Synthetic Double-Stranded
DNA (the Guidance), sets forth
recommended baseline standards for the
gene and genome synthesis industry and
other providers of synthetic dsDNA
products regarding the screening of
orders so that they are filled in
compliance with current U.S.
regulations and to encourage best
practices in addressing biosecurity
concerns associated with the potential
misuse of their products to bypass
existing regulatory controls. Following
this Guidance is voluntary, though
many specific recommendations serve
to remind providers of their obligations
under existing regulations. The
framework includes customer screening
and sequence screening, follow-up
screening as necessary, and consultation
with U.S. Government contacts, as
needed.
A draft version of the Guidance was
published as a Federal Register Notice
(Federal Register, Vol. 74, No. 227,
November 27, 2009, Screening
Framework Guidance for Synthetic
Double-Stranded DNA Providers) for
public consideration and comment for a
period of 60 days. Comments were
reviewed and the Guidance was
amended through a deliberative
interagency process. The Response to
Public Comments document, which
precedes the final Guidance in the
Supplementary Information section of
this Notice, provides a general review of
the decisions made to alter the
Guidance in response to public
comments. The Department of Health
and Human Services (HHS) is issuing
this document as the lead agency in a
broad interagency process to draft the
Guidance. The Guidance will be
reviewed on a regular basis and revised,
as necessary. For further details about
the Guidance, to access public
comments, and to provide ongoing
feedback please refer to https://
www.phe.gov/preparedness/legal/
guidance/syndna.
DATES: The Guidance is effective on
October 13, 2010.
FOR FURTHER INFORMATION CONTACT:
Jessica Tucker, PhD, Office of Policy
and Planning, Office of the Assistant
Secretary for Preparedness and
Response, U.S. Department of Health
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Federal Register / Vol. 75, No. 197 / Wednesday, October 13, 2010 / Notices
and Human Services, 330 C Street, SW.,
Room 3021K, Washington, DC 20201;
phone: 202–260–0632; fax: 202–205–
8674; Web site: https://www.phe.gov/
preparedness/legal/guidance/syndna.
SUPPLEMENTARY INFORMATION:
Response to Public Comments on Draft
Screening Framework Guidance for
Synthetic Double-Stranded DNA
Providers
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I. Summary
The draft Guidance document was
posted as a Federal Register Notice on
November 27, 2009, for a period of 60
days for public comment. Twenty-two
individual responses were received
during this time period. The American
Association for the Advancement of
Science hosted a meeting to solicit the
views of scientists, the public, and
stakeholder communities on January 11,
2010 during the public comment period;
the summary report from this meeting
was submitted as a formal comment.
Public comments are available at the
following Web site: https://www.phe.gov/
preparedness/legal/guidance/syndna.
An interagency working group of
Federal Government representatives was
established to review and consider the
public comments that were received;
these comments informed the changes
made in the final version of the
Guidance. In general, public comments
were received in the areas of customer
screening, customer concerns, follow-up
screening, and sequence screening,
though some comments fell outside
these categories. This Response to
Public Comments document provides a
general review of the decisions made to
alter the Guidance in response to public
comments in these thematic areas.
A. Customer Screening and Customer
Concerns
The draft Guidance includes
recommendations for providers to
screen against a number of different lists
of proscribed entities; the lists to screen
against differ depending on whether the
order is placed by a domestic or
international customer. Regarding these
recommendations, several comments
indicated a desire for a list that
combines these proscribed entities (or
alternatively, for a list of ‘‘approved’’
customers). No changes were made in
response to these comments. The
indicated lists exist under several
different legal authorities and are
maintained by different government
bodies. In order to ensure that providers
are referencing the most up-to-date
versions of these lists, the U.S.
Government continues to recommend
that providers consult the primary
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sources.a A list of ‘‘approved’’ customers
is not practicable as it would have to be
updated very frequently, given the
emergence of new legitimate customers
on a regular basis, and it would require
that companies share their customer
lists. Customers and providers should
be aware, however, that there are some
software packages available that may
address these requests for a centralized
database of consolidated lists.
Several comments were received
regarding the list of ‘‘red flags’’ outlined
in Section V.A.2 of the Guidance. Some
respondents requested more guidance
regarding how to respond to ‘‘red flags’’
raised in the customer screening
process. To address these concerns, the
Guidance now clarifies that follow-up
screening is recommended whenever
any ‘red flag’ raises cause for concern.
Additionally, several respondents
requested the deletion of the following
‘red flag’ which appeared in the draft
Guidance: ‘‘An unusually large order of
DNA sequences, including larger than
normal quantities, the same order
placed several times, or several orders of
the same sequence made in a short
timeframe.’’ Some customers and
providers have indicated that such
orders are a regular part of doing
business and do not pose cause for
concern. The U.S. Government agrees
with these assessments. Accordingly,
this ‘red flag’ has been deleted from the
final Guidance text.
Several comments also indicated that
‘‘customers’’ are not always equivalent to
‘‘end users,’’ and these respondents
indicated that the Guidance should be
clearer in advising providers to request
information about the ‘‘end user.’’ In
response to these comments, the final
Guidance has been amended to define
‘‘customers’’ and ‘‘principal users’’; most
initial customer screening is focused on
customers, while follow-up screening
addresses both customers and principal
users. ‘‘Principal users’’ was chosen
rather than ‘‘end users,’’ to prevent
confusion with the Department of
Commerce definition of ‘‘end user’’ vis`
a-vis export control.
A few comments reflected an interest
in altering the Guidance to include a
process for customers to contest denied
orders. No changes were made in
response to these comments. Because
providers of synthetic double-stranded
DNA (dsDNA) already have the right to
deny an order for multiple reasons,
a The Department of Commerce maintains
consolidated links to many of these lists on the
following Web site: https://www.bis.doc.gov/
complianceandenforcement/liststocheck.htm.
Additionally, the ‘‘EAR Marketplace’’ also includes
consolidated links to lists: https://bxa.ntis.gov/
prohib.html.
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including issues unrelated to
biosecurity concerns, a process to
contest denied orders is not offered in
this Guidance. Finally, a couple of
comments indicated that customers
should be notified when their orders
raised any cause for concern. In followup screening, it is recommended that
customers be contacted for additional
information about their order when
there is cause for concern, so customers
will be made aware if their order raises
a ‘red flag’ for the provider. Therefore,
no changes were made in response to
these comments.
B. Follow-Up Screening
A few comments requested additional
clarity or recommendations regarding
vetting orders that are placed by an
individual within a larger organization
or entity. As a result, the follow-up
screening section has now been
amended to include examples of steps
that might be taken to address orders
from customers that are organizations or
principal users that are affiliated with a
larger organization. Additionally,
because a couple of comments indicated
that unaffiliated customers or principal
users may not have a publication record,
an additional option was provided for
vetting unaffiliated customers/principal
users wherein the customer/principal
user may provide references that can
verify their identity and the legitimacy
of the order.
C. Sequence Screening
The topic that elicited the most public
comments was sequence screening. The
issues raised can generally be separated
into the following themes: type/length
of DNA to screen, sequences of concern,
and sequence screening methodology.
1. Type/Length of DNA to Screen
In the draft Guidance, the U.S.
Government recommended that orders
of synthetic dsDNA 200 base pairs (bps)
and longer should be subject to a
screening framework. A number of
public comments critiqued this
recommendation, while a few comments
supported this recommendation as
reasonable. Some comments stated that
200 bps is too small to be practical for
providers to implement, and
recommended screening sequences 1
kilobase pair (kbp) and longer. A larger
number of comments stated that a 200
bp limit is not scientifically justified,
and argued that because most providers
already screen all synthetic dsDNA
orders, the 200 bp limit should be
eliminated. Finally, a small number of
comments recommended that
oligonucleotides, in addition to dsDNA,
should be included in a screening
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framework. The U.S. Government agrees
that a 200 bp limit is not scientifically
justified and that most providers already
screen all dsDNA orders. Therefore, the
recommendation to eliminate the 200 bp
limit was adopted, and the final
Guidance now recommends that all
dsDNA orders should be screened.
Because crafting ‘‘agents of concern’’
using dsDNA via de novo synthesis is
still easier than by using single-stranded
oligonucleotides, dsDNA is the focus of
this screening framework. Additionally,
it is likely that implementing a
screening framework would pose a
significant burden for providers of
oligonucleotides. Nonetheless, given the
rapid developments in DNA synthesis,
the U.S. Government will continue to
examine this issue and may make
amendments accordingly.
2. ‘‘Sequences of Concern’’
A number of comments noted that
many sequences that are not unique to
Select Agents and Toxins may pose a
biosecurity risk, but that only those
sequences unique to Select Agents and
Toxins (and, for international orders,
those sequences unique to items on the
Commerce Control List (CCL)) are
characterized as ‘‘sequences of concern’’
within the draft Guidance. Additionally,
several comments noted that non-Select
Agent homologs that are closely related
to a Select Agent virulence factor or
pathogenicity gene could potentially be
ordered and then substituted for the
Select Agent sequence. These comments
variously recommended that the
Guidance adopt a broader definition of
‘‘sequences of concern,’’ establish a
curated database of virulence genes and
‘‘other dangerous sequences,’’ and/or
adopt a ‘‘Top Homology’’ screening
approach (see discussion of Screening
Methodology below).
The U.S. Government recognizes that
there are concerns that synthetic dsDNA
sequences not unique to Select Agents
or Toxins or CCL items may also pose
a biosecurity concern. However, a
robust screening framework that can be
consistently implemented from provider
to provider requires a clear set of criteria
for identifying non-Select Agent or
Toxin (or non-CCL) ‘‘sequences of
concern.’’ Due to the complexity of
determining whether a specific
sequence corresponds to a virulence
factor or pathogenicity gene or
otherwise poses a biosecurity risk, and
because current knowledge of virulence
and pathogenicity is limited, it is not
currently possible to develop clear
criteria that providers could use to
robustly, comprehensively, and
consistently identify non-Select Agent
and Toxin or non-CCL ‘‘sequences of
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concern’’ based on virulence,
pathogencity, or ‘‘other danger.’’
In addition, many pathogens and
toxins not listed on the Select Agents
and Toxins lists and the CCL could
nearly as easily be obtained through
other means. The Select Agents and
Toxins lists and the CCL are welldefined lists of high consequence
pathogens and toxins that have the
potential to pose a severe threat to
human, animal, or plant health. Finally,
the agents on the Select Agents and
Toxins lists and the CCL are most
relevant for these purposes because a
primary goal is to prevent access to
agents otherwise subject to existing
regulations.
Consequently, in the final Guidance,
the U.S. Government continues to
define ‘‘sequences of concern’’ as those
sequences unique to Select Agents and
Toxins (and those sequences unique to
items on the CCL for international
orders).
The sequence screening
recommendations contained in this
Guidance do not preclude the use of
curated databases or the development of
robust criteria that can consistently
identify non-Select Agent and Toxin or
non-CCL sequences that may pose a
biosecurity risk. The U.S. Government
encourages the continued development
of such databases and criteria as
additional screening tools that will
improve with time as additional data
becomes available. To advance
knowledge in this arena, the National
Academies is conducting a study that
will identify the scientific advances
necessary to predict biological function
from nucleic acid sequences for
oversight of Select Agents.
3. Screening Methodology
Many of the comments on screening
methodology echoed issues raised in
defining ‘‘sequences of concern.’’ A
number of comments criticized the ‘‘Best
Match’’ approach to screening, arguing
that it is easily circumvented and less
robust than some current industry
screening practices, and proposed either
screening against a centralized, curated
database of ‘‘sequences of concern’’ or
adopting a ‘‘Top Homology’’ approach.
The curated database approach is
potentially very efficient, but requires
the creation of databases identifying
specific features such as known
pathogenic sequences, virulence factors,
house-keeping genes, etc. While the
acquisition of such knowledge is
progressing, at this time it is not
possible to provide a robust database
that would identify all or even most
such sequences.
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In the ‘‘Top Homology’’ approach,
human screeners examine all sequences
that exceed a certain threshold of
homology to a dsDNA order to
determine whether or not the matching
sequences are derived from Select
Agents and Toxins or from genes
variously described in public comments
as ‘‘genes that can be intentionally
abused,’’ ‘‘risk-associated’’ genes, or
genes that ‘‘code for virulence or other
threat characteristics.’’ This approach
shares some similarities with ‘‘Best
Match,’’ though the ‘‘Top Homology’’
approach considers all sequences that
exceed a certain threshold and ‘‘Best
Match’’ considers the top ‘‘hit.’’ As with
the customized database approach, a
‘‘Top Homology’’ approach could not be
meaningfully implemented without a
clear set of effective criteria for
determining in a consistent and nonarbitrary manner when an order should
trigger further customer review.
However, the clear and effective criteria
needed to make such an approach work
are difficult to determine. The ‘‘Best
Match’’ approach flags only the top
‘‘hit,’’ which meets the stated goal of
identifying sequences unique to Select
Agents and Toxins (and, for
international orders, sequences unique
to items on the CCL).
As a result, the U.S. Government
continues to recommend the use of the
‘‘Best Match’’ approach for screening. As
stated above, the U.S. Government
recognizes that there are concerns that
synthetic dsDNA sequences not unique
to Select Agents or Toxins or CCL items
may also pose a biosecurity concern.
The U.S. Government also recognizes
that many providers have already
instituted measures to address these
concerns. The Guidance sets forth
recommended baseline standards for
providers regarding the screening of
orders so they are filled in compliance
with current U.S. regulations and to
encourage best practices in addressing
biosecurity concerns. As such, the
ongoing development of best practices
in this area is commendable and
encouraged, particularly in light of the
continued advances in DNA sequencing
and synthesis technologies and the
accelerated rate of sequence
submissions to public databases such as
GenBank.
Minor wording changes have been
made to clarify or alter the technical
details of the screening methodology,
including language to address the high
sequence similarity of some Select
Agents and Toxins with some
attenuated strains of Select Agents and
Toxins that have been excluded from
regulation. The U.S. Government
recognizes that continued research and
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development may lead to new and
improved screening methodologies. As
new methods are developed, U.S.
guidance may change accordingly. In
addition, the sequence screening
methodology recommendations
contained in this Guidance do not
preclude the use of other screening
approaches that providers assess to be
equivalent or superior to the ‘‘Best
Match’’ approach.
It is significant to note that sequence
screening is simply a trigger for further
customer screening and decisionmaking and does not by itself provide a
basis for determining that filling an
order is likely to pose a threat.
Beyond ‘‘Best Match’’ comments, some
public comments requested that
additional software screening
recommendations be provided; for
example, software packages, additional
screening parameters, etc. It is not the
policy of the U.S. Government to
recommend specific, proprietary
software packages. As a result,
additional screening parameters are not
provided as these details are specific to
individual screening packages. Finally,
the recommendation to ‘‘separately’’
screen international orders against both
the Select Agents and Toxins lists and
the CCL that appeared in the draft
Guidance was altered to indicate that,
for international orders, screening
should cover the CCL in addition to the
Select Agents and Toxins lists. Whether
these screens are conducted separately
or simultaneously is up to the provider.
D. Other Issues
In the draft Guidance, the screening
framework indicated that customer
screening should precede sequence
screening. Several comments noted that
the order of screening is irrelevant, as
long as both customer and sequence
screening occur for every order. The
U.S. Government agrees with these
comments, and has altered the final
Guidance to remove the
recommendation that screening occur in
a particular order.
Finally, the recommendations in the
draft Guidance were directed to
‘‘commercial’’ providers. Some
comments indicated that the U.S.
Government should recommend that all
providers of synthetic dsDNA follow the
recommended screening framework.
The U.S. Government agrees with these
comments. In order to effectively meet
biosecurity goals, this recommendation
was adopted, and the final Guidance is
directed to all providers of synthetic
dsDNA. Accordingly, when the final
Guidance refers to ‘‘orders’’ of synthetic
dsDNA, this term does not necessarily
imply a commercial transaction.
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Screening Framework Guidance for
Providers of Synthetic Double-Stranded
DNA
screening does not resolve concerns
about the order or there is reason to
believe a customer may intentionally or
inadvertently violate U.S. laws,
providers should contact designated
entities within the U.S. Government for
further information and assistance. This
Guidance also provides
recommendations regarding proper
records retention protocols and
screening software.
I. Summary
Synthetic biology, the developing
interdisciplinary field that focuses on
both the design and fabrication of novel
biological components and systems as
well as the re-design and fabrication of
existing biological systems, is poised to
become the next significant
transforming technology for the life
sciences and beyond. Synthetic biology
is not constrained by the requirement of
using existing genetic material and thus
has great potential to be used to generate
organisms, both currently existing and
novel, including pathogens that could
threaten public health, agriculture,
plants, animals, the environment, or
materiel. In the United States, many
such pathogens, as well as certain
toxins, are defined by specific existing
regulations: Namely, the Select Agent
Regulations (SAR) and, for international
orders, the Export Administration
Regulations (EAR). To reduce the risk
that individuals with ill intent may
exploit the application of nucleic acid
synthesis technology to obtain genetic
material derived from or encoding
Select Agents or Toxins and, as
applicable, agents on EAR’s Commerce
Control List (CCL), the U.S. Government
has developed Guidance that provides a
framework for screening synthetic
double-stranded DNA (dsDNA). This
Guidance sets forth recommended
baseline standards for the gene and
genome synthesis industry and other
providers of synthetic dsDNA products
regarding the screening of orders so that
they are filled in compliance with
current U.S. regulations and to
encourage best practices in addressing
biosecurity concerns associated with the
potential misuse of their products to
bypass existing regulatory controls.
Following this Guidance is voluntary,
though many specific recommendations
serve to remind providers of their
obligations under existing regulations.
Briefly, upon receiving an order for
synthetic dsDNA, the U.S. Government
recommends that providers perform
customer screening and sequence
screening. If either customer screening
or sequence screening raises any
concerns, providers should perform
follow-up screening. If follow-up
II. Introduction
Synthetic biology, unlike traditional
recombinant DNA technology, is not
constrained by the requirement for
existing genetic material. This novel
feature, along with rapid advances in
DNA synthesis technology and the open
availability of pathogen genome
sequence data, has raised concerns in
the scientific community, the dsDNA
synthesis industry, the U.S.
Government, and the general public that
individuals with ill intent could exploit
this technology for harmful purposes.
Within the U.S., microbial organisms
and toxins that have been determined to
have the potential to pose a severe
threat to public health and safety,
animal health, plant health, or animal or
plant products are regulated through the
SAR, administered by the Department of
Health and Human Services/Centers for
Disease Control and Prevention (HHS/
CDC) and the U.S. Department of
Agriculture/Animal and Plant Health
Inspection Service (USDA/APHIS). The
SAR sets forth requirements for the
possession, use, and transfer of listed
agents. Additionally, the EAR identifies
agents and genomic sequences that
require export licenses from the United
States. The directed synthesis of
polynucleotides could enable
individuals not authorized to possess
Select Agents (or, for international
orders, those items listed on the CCL) to
obtain them through transactions with
providers of synthetic dsDNA. Such
synthesis obviates the need for access to
the naturally occurring agents or
naturally occurring genetic material
from these agents, thereby greatly
expanding the potential availability of
these agents.
The National Science Advisory Board
for Biosecurity (NSABB) was charged
with identifying the potential
biosecurity concerns raised by the
ability to synthesize Select Agents and
providing advice on whether current
U.S. Government policies and
regulations adequately cover the de
novo synthesis of Select Agents. Their
report entitled Addressing Biosecurity
Concerns Related to the Synthesis of
Select Agents was formally transmitted
to the U.S. Government in March 2007.
The Guidance will be reviewed on a
regular basis and revised, as necessary.
The U.S. Government recognizes that as
the technology, the industry, and the
nature of the biosecurity risk change,
the Guidance will have to be altered,
accordingly.
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Federal Departments and Agencies with
roles in life sciences research and/or
security deliberated over the NSABB
recommendations and identified a series
of relevant policy actions targeted to
promote risk management, while
seeking to minimize negative impacts
upon scientific progress or industrial
development.
One of the formal policy actions
charged Federal Departments and
Agencies to identify, evaluate, and
support the establishment of a screening
infrastructure for use by providers and
users of synthetic nucleic acids while
engaging stakeholders in industry and
academia. This document provides
guidance to all providers of synthetic
dsDNA regarding a screening framework
for synthetically-derived dsDNA orders.
Specific recommendations are in bold
type throughout the text.
In the context of this Guidance, the
following definitions are applicable:
‘‘Provider’’ refers to the entity that
synthesizes and distributes dsDNA. A
provider is understood to be an entity
synthesizing dsDNA for and distributing
dsDNA to a customer, not a research
scientist collaborating with a colleague.1
‘‘Customer’’ refers to the individual or
organization that orders or requests
synthetic dsDNA from a provider, and
‘‘Principal user’’ is the individual that
receives and ultimately uses the ordered
or requested dsDNA.
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III. Goals of Guidance
The primary goal of the Guidance is
to minimize the risk that unauthorized
individuals or individuals with
malicious intent will obtain ‘‘toxins and
agents of concern’’ through the use of
nucleic acid synthesis technologies, and
to simultaneously minimize any
negative impacts on the conduct of
research and business operations. The
Guidance was developed, in light of
providers’ existing protocols, to be
implemented without unnecessary cost
and to be globally extensible, both for
U.S.-based providers operating abroad
and for international providers.
Providers of synthetic dsDNA have
two overriding responsibilities in this
context:
• Providers should know to whom
they are distributing a product.
• Providers should know if the
product that they are synthesizing and
distributing contains, in part or in
whole, a ‘‘sequence of concern’’.
The Guidance outlines a screening
framework that will assist providers in
meeting both of these responsibilities.
1 Transfers
of synthetic dsDNA should be
evaluated for conformance with the SAR and EAR
even when dealing with collaborating laboratories.
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Though certain guidance provided in
this document is necessarily framed by
U.S. policy and regulations, the
Guidance was composed so that
fundamental goals, provider
responsibilities, and the screening
framework could be considered for
application by the international
community. In particular, though the
Select Agents and Toxins and the CCLlisted items that are the primary focus
of the Guidance may not be relevant for
all countries, the sequence screening
framework can be applied to other
categories of agents and toxins that may
be relevant for other regions.2
IV. Overview: Synthetic dsDNA
Screening Framework
Providers should establish a
comprehensive and integrated screening
framework that includes both customer
screening and sequence screening, as
well as follow-up screening when
customer and/or sequence screening
raises a concern.
• Customer Screening—The purpose
of customer screening is to establish the
legitimacy of customers ordering
synthetic dsDNA sequences. Providers
should develop customer screening
mechanisms to verify the legitimacy of
a customer if the customer is an
organization or confirm customer
identity if the customer is an individual,
to identify potential ‘red flags,’ and to
conform to U.S. trade restrictions and
export control regulations.
• Sequence Screening—The purpose
of sequence screening is to identify
when ‘‘sequences of concern’’ are
ordered. Identification of a ‘‘sequence of
concern’’ does not necessarily imply that
the order itself is of concern. Rather,
when a ‘‘sequence of concern’’ is
ordered, further follow-up procedures
should be used to determine if filling
the order would raise concern.
Sequence screening is recommended for
all dsDNA orders.
• Follow-up Screening—The purpose
of follow-up screening is to verify the
legitimacy of customers both at the level
of the customer and the principal user,
to confirm that customers and principal
users placing an order are acting within
their authority, and to verify the
legitimacy of the end-use.
Many customers will likely volunteer
information about their identity or the
sequence they are ordering. Providers
should corroborate this information as
part of their screening framework.
The following overall screening
methodology is recommended:
2 The CCL items that are on the Australia Group
Common Control Lists are relevant for all Australia
Group members (see https://www.australiagroup.
net/en/).
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1. Upon receiving an order for
synthetic dsDNA, the U.S. Government
recommends that providers conduct
both customer screening and sequence
screening. In customer screening,
providers should review the information
provided by the customer to verify their
corporate or individual identity (as
applicable), and to identify potential
‘‘red flags.’’ Providers should also check
customers against lists of denied or
blocked persons and entities maintained
by the Departments of Commerce, State,
and Treasury.
In sequence screening, the U.S.
Government recommends screening the
ordered sequence to identify sequences
derived from or encoding Select Agents
and Toxins 3 and, for international
customers, providers should also screen
the ordered sequence to identify
sequences derived from or encoding
items on the CCL.4 Scenarios of concern
may include:
a. If an ordered dsDNA product can be
classified as a Select Agent or Toxin
based on the SAR 3 5 or is identified as
a ‘‘sequence of concern’’ (defined in
Section V.B.1.), additional customer
verification steps should be performed
and may in some cases be required.
b. If an ordered dsDNA product can
be classified as a Select Agent or Toxin
based on the SAR, 3 5 providers must be
registered under the SAR to possess the
dsDNA product. Transfer of the material
from the provider must be done in
accordance with APHIS and CDC
procedures using the APHIS/CDC Form
2 to obtain authorization for and to
document the transfer. Additional
information on the transfer of Select
Agents and Toxins is available at https://
www.selectagents.gov.
c. Additional restrictions or licensing
requirements may apply for
3 Please see https://www.selectagents.gov to access
the most recent Select Agents and Toxins lists.
4 Visit https://www.access.gpo.gov/bis/ear/
ear_data.html to access the most recent Commerce
Control List and review the Export Administration
Regulations. The pathogens on the Commerce
Control List are derived from the Select Agents and
Toxins lists and the Australia Group’s three
pathogen control lists. As a member of the Australia
Group, the United States has made a commitment
to control exports of pathogens and their genetic
elements on these lists.
5 The CDC/APHIS national Select Agent registry
Web site (https://www.selectagents.gov) contains a
guidance document entitled ‘‘Applicability of the
Select Agent Regulations to Issues of Synthetic
Genomics’’ to assist providers in identifying
synthetically derived Select Agent materials that
would fall under the current regulations. The
regulation of Select Agents and Toxins currently
includes (1) nucleic acids that can produce
infectious forms of any Select Agent viruses and
(2) Recombinant nucleic acids that encode for the
functional form(s) of any of the regulated toxins if
the nucleic acids: (i) Can be expressed in vivo or
in vitro, or (ii) Are in a vector or recombinant host
genome and can be expressed in vivo or in vitro.
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international orders if they include an
item that is listed on the CCL.6
2. If sequence screening or customer
screening raises any concerns, providers
should pursue follow-up screening to
verify the legitimacy of the customer,
the principal user and the end-use of the
ordered sequence. The goal of follow-up
screening is to assist the provider in
determining whether to fill the order. If
the provider encounters a scenario
where they would benefit from
additional assistance in assessing an
order, the provider is encouraged to
seek advice from the relevant U.S.
Government Departments and Agencies
by contacting the nearest FBI Field
Office Weapons of Mass Destruction
(WMD) Coordinator. The WMD
Coordinator can be reached by
contacting the local FBI Field Office and
asking to be connected to the FBI WMD
Coordinator.
instituted measures and procedures to
properly vet customers. The ongoing
development of best practices in
customer screening is commendable and
encouraged, particularly as
methodologies and resources become
available to further assist with customer
screening.
The U.S. Government recommends
that companies retain records of
customer orders for at least eight years
based on the statute of limitations set
forth by U.S. Code of Federal Crimes
and Procedures, Title 18 Section 3286.7
The U.S. Government recommends
archiving the following information:
customer information (point-of-contact
name, organization, address, and phone
number), order sequence information
(nucleotide sequences ordered, vector
used), and order information (date
placed and shipped, shipping address,
and receiver name).
V. Details: Synthetic dsDNA Screening
Framework
2. ‘‘Red Flags’’
This section provides details of the
steps involved in the recommended
screening framework. These steps
include customer screening, sequence
screening, and follow-up screening.
A. Customer Screening
Customer screening encompasses two
overarching responsibilities of
providers: customer verification and
identification of any ‘‘red flags.’’
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1. Customer Verification
(a) The U.S. Government
recommends that, for every order,
providers of synthetic dsDNA gather
the following information to verify a
customer’s identity:
• Customer’s full name and contact
information
• Billing address and shipping
address (if not the same)
• Customer’s institutional or
corporate affiliation (if applicable)
(b) To ensure compliance with U.S.
regulations concerning exports and
sanctioned individuals and countries,
the U.S. Government recommends that,
for every order, providers of synthetic
dsDNA screen customers against
several lists of proscribed entities
(described in Section VI).
Lack of affiliation with an institution
or firm does not automatically indicate
that a customer’s order should be
denied. In such cases, the U.S.
Government recommends conducting
follow-up screening.
Additionally, the U.S. Government
recognizes that many providers have
6 See Category 1, ECCN 1C353 of the CCL
available at https://www.bis.doc.gov.
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In reviewing the customer’s order
information, providers should take into
account any circumstances in the
proposed transaction that may indicate
that the order may be intended for an
inappropriate end-use, customer, or
destination. These are known as ‘‘red
flags.’’
The following is an illustrative list of
indicators that can help in identifying
suspicious orders of synthetic dsDNA:
• A customer whose identity is not
clear, who appears evasive about their
identity or affiliations, or whose
information cannot be confirmed or
verified (e.g., addresses do not match,
not a legitimate company, no Web site,
cannot be located in trade directories,
etc.).
• A customer who would not be
expected in the course of their normal
business to place such an order (e.g., no
connection to life science research,
biotechnology or requirement for DNA
synthesis services).
• A customer that requests unusual
labeling or shipping procedures (e.g.,
requests to misidentify the goods on the
packaging, requests to deliver to a
private address, or requests to change
the customer’s name after the order is
placed, but before it is shipped).
• A customer proposing an unusual
method of payment (e.g., arranging
payment in cash, personal credit card or
through a non-bank third party) or
offering to pay unusually favorable
payment terms, such as a willingness to
pay a higher than expected price.
7 The eight-year statute of limitations in Section
3286 applies to the offense defined by Title 18
Section 175(b) (possession of biological agents with
no reasonable justification).
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• A customer that requests unusual
confidentiality conditions regarding the
order, particularly with respect to the
final destination or the destruction of
transaction records.
If a review of customer information
reveals one or more ‘‘red flags,’’ the U.S.
Government recommends that
providers conduct follow-up
screening. If providers are unsure
about whether to fill an order, they
should contact the U.S. Government for
further information (described in
Section VII).
B. Sequence Screening
Sequence screening, which identifies
whether a requested sequence is a
‘‘sequence of concern,’’ is intended to
serve as a trigger for further follow-up
screening and does not by itself provide
a basis for determining whether an order
poses a risk. Providers should screen all
orders of dsDNA.
1. Identifying ‘‘Sequences of Concern’’
The U.S. Government recommends
that dsDNA orders be screened for
sequences derived from or encoding
Select Agents and Toxins and, for
foreign orders, for dsDNA derived from
or encoding CCL-listed agents, toxins,
or genetic elements. The U.S.
Government chose the pathogens and
toxins identified by HHS and USDA as
‘‘Select Agents and Toxins’’ as an
appropriate list of ‘‘agents of concern’’
against which providers should screen
orders since:
• The list is comprised of high
consequence pathogens and toxins that
have the potential to pose a severe
threat to human, animal, or plant health
or to animal or plant products
• Their possession, use, and transfer
are managed through Federal
regulations.
The Select Agents and Toxins lists are
reviewed biennially and updated as
needed to address biosecurity
concerns.8
The U.S. Government reminds
providers to screen for items on the CCL
for international orders to ensure they
are in compliance with the EAR. As a
member of the Australia Group, the
United States requires exporters through
8 A list of biological agents and toxins that affect
humans has been promulgated by HHS/CDC (HHS
Select Agents and Toxins, 42 CFR 73.3). A list of
biological agents that affect animals and animal
products has been promulgated by USDA/APHIS/
Veterinary Services (USDA Select Agents and
Toxins, 9 CFR 121.3). A list of agents that affect
plants and plant products has been promulgated by
USDA/APHIS/Plant Protection and Quarantine
(USDA Select Agents and Toxins, 7 CFR 331.3).
Additionally, HHS and USDA promulgated a list of
‘‘overlap’’ agents that affect both humans and
animals (42 CFR 73.4 and 9 CFR 121.4).
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the EAR to obtain export licenses for
exports of reading-frame length nucleic
acid sequences from pathogens listed
under Export Control Classification
Numbers (ECCNs) 1C351, 1C352, 1C353,
and 1C354.9 The EAR also requires
exporters to obtain licenses for exports
of reading-frame length nucleic acid
sequences from pathogens on the Select
Agent list not listed elsewhere on the
CCL (ECCN 1C360). The EAR
requirements specifically apply to
genetic elements that encode toxins or
sub-units of controlled toxins or genetic
elements associated with pathogenicity
of controlled microorganisms.
Therefore, for the purposes of this
Guidance, Select Agents and Toxins are
classified as ‘‘agents of concern,’’ and
‘‘sequences of concern’’ are dsDNA
sequences derived from or encoding
Select Agents and Toxins. For
international orders, ‘‘agents of concern’’
also include items on the EAR’s CCL,
and ‘‘sequences of concern’’ include
those dsDNA sequences derived from or
encoding those items. The U.S.
Government may revisit these
definitions in the future in light of
experience with implementation of the
Guidance and scientific and
technological developments.
Because the CCL and the Select
Agents and Toxins lists are not
identical, it is recommended that
providers ensure that international
orders are screened to identify
sequences derived from or encoding
items on the Select Agents and Toxins
lists and the CCL.
If a customer orders a synthetic
dsDNA product that meets the
definition of a Select Agent or Toxin,3 5
domestic providers and customers must
be in compliance with the CDC and
APHIS Select Agent Regulations (42
CFR part 73, 7 CFR part 331, and 9 CFR
part 121) in order to fill the order. A
provider of such regulated dsDNA must
be registered with CDC or APHIS in
order to synthesize these materials. In
addition, the provider must obtain an
approved transfer form from CDC or
APHIS and, for interstate transfers, a
permit from APHIS (when applicable) in
order to ship such products.
International providers are advised that
the receiving party must obtain an
import permit from CDC and/or APHIS
and an approved transfer form in order
to receive such products. All providers
are advised that receivers must hold a
9 Definitions of terms pertinent to exports can be
found in Part 772 of the EAR. Part 734 (15 CFR
chapter VII, subchapter C) describes the scope of
the EAR and explains certain key terms and
principles used in the EAR. The EAR provisions are
subject to change, as they are regularly updated
pursuant to multilateral agreements.
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permit in order to receive through
importation or interstate transport any
product that meets the definition of
‘‘plant pest’’ (as defined at 7 CFR part
330), or any organism or its derivative
which may introduce or disseminate
any contagious or infectious disease of
animals (9 CFR part 122).
The U.S. Government recognizes that
there are concerns that synthetic dsDNA
sequences not unique to Select Agents
or Toxins or CCL items may also pose
a biosecurity concern. The U.S.
Government also recognizes that many
providers have already instituted
measures to address these concerns. The
ongoing development of best practices
in this area is commendable and
encouraged, particularly in light of the
continued advances in DNA sequencing
and synthesis technologies and the
accelerated rate of sequence
submissions to public databases such as
the National Institutes of Health’s
GenBank. However, due to the
complexity of determining
pathogenicity and because research in
this area is ongoing and many such
agents are not currently encompassed by
regulations in the U.S., generating a
comprehensive list of such agents to
screen against is not currently feasible
and hence is not provided in this
Guidance.
2. Technical Goals and
Recommendations for Sequence
Screening
The U.S. Government developed the
following list of specific technical goals
and recommendations for a sequence
screening methodology to ensure the
reliable and accurate detection of
synthetic dsDNA sequences derived
from or encoding ‘‘sequences or agents
of concern:’’
The U.S. Government recommends
that the sequence screening method be
able to identify sequences unique to
Select Agents and Toxins; to meet their
obligations under existing regulations,
for international orders, screening
should also be able to identify
sequences unique to CCL-listed agents,
toxins, and genetic elements. Many
DNA sequences encode genes that are
required to maintain normal cellular
physiology, otherwise known as ‘‘housekeeping genes.’’ These ‘‘house-keeping
genes’’ are highly conserved between
pathogenic and non-pathogenic species.
Screening methodologies that recognize
highly conserved sequences such as
‘‘house-keeping genes’’ as positive ‘‘hits’’
for ‘‘sequences of concern’’ offer little
biosecurity benefit and may impede the
screening efforts. Such methodologies
would produce a larger number of ‘‘hits’’
adding extra burden for screeners and
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potentially resulting in actual
‘‘sequences of concern’’ being
overlooked. Additionally, such a system
may hamper scientific research by
falsely assigning sequences from closely
related microbes as ‘‘sequences of
concern.’’
The U.S. Government recommends
that sequence screening be performed
for both DNA strands and the resultant
polypeptides derived from translations
using the three alternative reading
frames on each DNA strand (or sixframe translation). Each amino acid is
encoded by a codon, a three nucleotide
sequence of DNA. The correspondence
from codon to amino acid is not unique.
A given amino acid may be encoded by
one to six distinct codons, which means
that an amino acid polypeptide can be
encoded by many different DNA
sequences. Consequently, to determine
whether a nucleotide sequence is
derived from or encodes a ‘‘sequence or
agent of concern,’’ it is necessary to
screen the six-frame translation
polypeptides encoded by the DNA
sequences in addition to the DNA
sequences themselves.
The U.S. Government recommends
that sequence alignment methods
should enable the detection of any
‘‘sequences of concern’’ in a dsDNA
order. The screening routine should be
capable of local sequence alignments. A
sequence screening system that assesses
only the overall sequence length
without any local checks may not detect
a ‘‘sequence of concern’’ embedded
within a larger, benign sequence. In
order to ensure that ‘‘sequences of
concern’’ embedded within larger
sequences are not overlooked, when
screening orders longer than 200 base
pairs (bps), providers should use
screening techniques able to detect
‘‘sequences of concern’’ as short as 200
bps in length. One method that
providers may consider using involves
comparing overlapping 200 bp
nucleotide segments (nucleotides 1–200,
2–201, etc.) and corresponding 66
amino acid sequences, over the length of
the dsDNA order, to a public sequence
database such as GenBank using a
sequence alignment tool.
3. Sequence Screening Methodology
The U.S. Government recommends a
‘‘Best Match’’ approach for sequence
screening to determine whether a
query sequence is derived from or
encodes a Select Agent or Toxin or, for
international orders, a sequence from a
CCL-listed item. In this approach, the
query sequence is aligned with a
database of known sequences (such as
GenBank) to identify the sequence with
the greatest percent identity (the ‘‘Best
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Match’’) over each 200 bp nucleic acid
segment and corresponding amino acid
sequence (or over the entire query
sequence for those dsDNA orders
shorter than 200 bps). Advantages of the
‘‘Best Match’’ approach include: It is
automatically adaptable as new
sequences are added to GenBank, it is
adaptable to entirely synthetic genes, it
can be accomplished using publicly
available databases and tools, and it
does not require provider discretion in
setting similarity cut-off criteria.
In this approach, a query sequence is
deemed to be a ‘‘hit,’’ and the order
should be investigated further by the
provider in follow-up screening, if the
nucleotide sequence, over any span of
200 or more nucleotides (or fewer than
200 nucleotides if the query sequence is
shorter than 200 bps), or if any of the
six derivable 66 amino acid open
reading frame (ORF) translations, is
more closely related to the sequence of
a Select Agent or Toxin (or CCL item,
when applicable) than to any other
sequence in GenBank. Due to the high
sequence similarity of some Select
Agents and Toxins with some
attenuated strains of Select Agents and
Toxins that have been excluded from
regulation,10 sequences that are ‘‘Best
Matches’’ to these excluded strains
should still be considered a ‘‘hit’’ and
the order should be subject to follow-up
screening.
The ‘‘Best Match’’ approach is
intended to minimize the number of
sequence hits due to genes that are
shared among both Select Agents or
Toxins and non-Select Agents or Toxins
(or for genes shared among CCL and
non-CCL items, when applicable).
Nonetheless, some harmless sequences
in Select Agents or Toxins (or CCL
items) or those that are routinely used
in scientific research may result in a
‘‘hit’’ during this sequence screen. The
U.S. Government recommends that
providers develop, maintain, and
document protocols to determine if a
sequence ‘‘hit’’ qualifies as a true
‘‘sequence of concern;’’ protocols that
are no longer current should be
maintained for at least eight years.
Additionally, providers should keep
screening records of all ‘‘hits’’ for at
least eight years, even if the order was
deemed acceptable. In cases where the
provider is unable to make the
determination, advice can be sought
from the relevant U.S. Government
Departments and Agencies by
contacting the nearest FBI Field Office
10 Information about attenuated strains that are
not subject to the requirements of 42 CFR part 73,
9 CFR part 121, and 7 CFR part 331 can be accessed
at https://www.selectagents.gov/Exclusions.html.
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Weapons of Mass Destruction
Coordinator.
As noted in Section V.B.1 above, the
U.S. Government recognizes that there
are concerns that synthetic dsDNA
sequences not unique to Select Agents
or Toxins or CCL items may also pose
a biosecurity concern. The U.S.
Government also recognizes that many
providers have already instituted
measures to address these concerns. The
ongoing development of best practices
in this area is commendable and
encouraged, particularly in light of the
continued advances in DNA sequencing
and synthesis technologies and the
accelerated rate of sequence
submissions to public databases such as
GenBank.
To this end, providers may also
choose to use other screening
approaches that they assess to be
equivalent or superior to the ‘‘Best
Match’’ approach or that supplement it,
including customized database
approaches or approaches that evaluate
the biological risk associated with nonSelect Agent and Toxin sequences or,
for international orders, sequences not
associated with items on the CCL. These
sequence screening recommendations
do not preclude the use of curated
databases of non-Select Agent or Toxin
or non-CCL sequences for sequence
screening. The U.S. Government
encourages the development of such
databases as an additional screening
tool that will improve with time as
additional data become available.
Whatever sequence screening approach
a provider adopts, the approach should
meet the technical requirements
outlined in Section V.B.2; additionally,
the provider may choose to develop
additional criteria to address non-Select
Agent and Toxin or non-CCL sequences.
If the provider determines that an
ordered product poses a biosecurity
risk, the provider should conduct
follow-up screening accordingly. The
U.S. Government recommends that
providers develop, maintain, and
document their sequence screening
protocols within company records;
protocols that are no longer current
should be maintained for at least eight
years.
The U.S. Government recognizes that
continued research and development
may lead to new and improved
screening methodologies. As new
methods are developed, U.S. Guidance
may change accordingly.
C. Follow-Up Screening
The purpose of follow-up screening is
to verify the legitimacy of the customer
and the principal user, to confirm that
the customer and principal user placing
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an order are acting within their
authority, and to verify the legitimacy of
the end-use.
Follow-up screening should be
conducted if customer screening or
sequence screening raises any
concerns. In any case where there are
abnormal circumstances surrounding
the order or the customer has ordered a
‘‘sequence of concern,’’ the U.S.
Government recommends that
providers ask for information about the
customer and principal user, including
the proposed end-use of the order, to
help assess the legitimacy of their
order.11 Sample end-uses of ordered
synthetic dsDNA could include, but are
not limited to:
• Identification of pathogenicity
genes via marker-deletion mutagenesis.
• Training for threat agent detection.
• Production of organism for
experimental research studies.
If not conducted previously,
providers should gather the following
information to verify a principal user’s
identity:
• Principal user’s full name and
contact information.
• Billing address and shipping
address (if not the same).
• Principal user’s institutional or
corporate affiliation (if applicable)
If the customer or principal user is
affiliated with an institution or firm,
providers should contact the relevant
biological safety officer, supervisor, lab
director, director of research, or other
relevant institutional representative in
order to confirm the order, verify the
customer’s and principal user’s
identity, and verify the legitimacy of the
order. If the customer or principal user
is not affiliated with an institution or
firm, providers should also conduct a
literature review of the customer’s or
principal user’s past research to verify
his or her identity and the legitimacy of
the order. If a literature review results
in no publications, providers should
request the unaffiliated customer or
principal user provide references that
can verify their identity and the
legitimacy of the order. Additionally,
the U.S. Government recommends that
providers screen principal users
against several lists of proscribed
entities (described in Section VI), if this
11 As statutory precedent for requesting
information about proposed end-use, providers and
customers should be aware of U.S. Code Title 18
Section 175(b), which states in part that
‘‘Whosoever knowingly possesses any biological
agent, toxin, or delivery system of a type or in a
quantity that, under the circumstances, is not
reasonably justified by a prophylactic, protective,
bona fide research, or other peaceful purpose, shall
be fined under this title, imprisoned not more than
10 years, or both.’’
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step wasn’t already performed as part
of customer screening.
Providers may consider other steps
that could be implemented as part of
follow-up screening. For example, when
the customer is an institution or firm,
providers may consider the following
steps: Check the customer’s contact
information against standard industry
and institutional directories and
listings; where the customer is known
by reputation, check that the contact
information matches its Web page;
and/or confirm customer identity
though government contacts. When the
customer or principal user is affiliated
with an institution or firm, providers
may consider the following steps: Check
whether the institution’s or firm’s usual
paperwork has been used to place the
order; check that shipments will be
delivered to the institution’s or firm’s
usual address; check that the customer’s
and principal user’s supervisors have
been copied on the order or can confirm
the order; check that the order has been
certified by the institution or firm; and/
or check that the end-use has been
reviewed and approved by the
institutional biosafety committee or
another relevant institutional
committee.
It is important to note that a
provider’s decision to pursue follow-up
screening does not necessarily imply
that the U.S. Government will be
contacted. However, in cases where
follow-up screening cannot resolve
concerns raised by customer screening
or sequence screening, or when
providers are otherwise unsure about
whether to fill an order, the U.S.
Government recommends that providers
contact relevant agencies as described in
Section VII. Providers should retain
records of any follow-up screening,
even if the order was ultimately filled,
for at least eight years.
VI. Recommended Processes for
Domestic and International Orders
This section outlines
recommendations for specific screening
processes for orders from domestic and
international customers. The customer
screening, sequence screening, and
follow-up screening protocols that are
referenced in this section are defined
and described in Section V. Most of the
information provided in this section
serves as a reminder to providers to
ensure they are meeting their legal
obligations not to conduct unapproved
business transactions with certain
proscribed entities.
A. Domestic Orders
Once a domestic customer order is
received, the provider should conduct
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both customer screening and sequence
screening, in no particular order.
1. Customer Screening
In addition to verifying the customer
identity and identifying any ‘‘red flags,’’
providers should be aware of regulatory
and statutory prohibitions for U.S.
persons from dealing with certain
foreign persons, entities and companies.
In order to avoid violating U.S. law,
providers are encouraged to check the
customer against several lists of
proscribed entities before filling each
order, including the:
• Department of Treasury Office of
Foreign Assets Control (OFAC) list of
Specially Designated Nationals and
Blocked Persons (SDN List).
• Department of State list of persons
engaged in proliferation activities.
• Department of Commerce Denied
Persons List (DPL).
According to U.S. regulations, no U.S.
persons or entities may conduct
business transactions with individuals
or entities on the SDN List without a
license from OFAC. This list is
maintained by OFAC. OFAC only
provides a license to deal with
individuals on the SDN List in
extremely limited circumstances.12
According to U.S. regulations, no U.S.
persons or entities may conduct
business transactions with individuals
sanctioned by the Department of State
for engaging in proliferation
activities.13
Additionally, the U.S. Government
recommends that providers screen
customers against the DPL for domestic
orders. This list includes those firms
and individuals whose export privileges
have been denied. While the
Department of Commerce only regulates
exports and therefore does not require
that companies screen their domestic
customers against the list, it
recommends that they do so, to avoid
unwittingly passing on sensitive
technology or materials to U.S. residents
known to be involved in proliferation
activities.4
Because the updated lists are
available online, providers should
ensure they are using the most recently
updated lists when screening customers
or principal users against these lists.
If there are concerns after consulting
these lists, providers should seek
assistance from the U.S. Government as
outlined in Section VII.
12 Additional information, including the SDN
List, is available at: https://www.treas.gov/offices/
enforcement/ofac/sdn/.
13 Announcements of such sanctions
determinations are printed in the Federal Register
and are maintained on the Department of State’s
Web site (https://www.state.gov/t/isn/c15231.htm).
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2. Sequence Screening
Providers should also conduct
sequence screening. If a ‘‘sequence of
concern’’ is identified, providers should
conduct follow-up screening.
B. International Orders
Once an order from an international
customer is received, the provider
should conduct customer screening and
sequence screening, in no particular
order. Providers are reminded that
genetic elements of the Select Agents
and Toxins, microorganisms and toxins
(proteins) are controlled for export.
Exporters should make sure they are in
compliance with the EAR when
exporting genetic elements from CCLlisted items.4
1. Customer Screening
In addition to verifying the customer
identity, identifying any ‘‘red flags,’ and
complying with the rules described for
domestic orders, all providers who
export products from the United States
to international customers must comply
with the U.S. export laws, including the
International Emergency Economic
Powers Act,14 the Trading with the
Enemy Act,15 and any implementing
U.S. Government regulations or
Presidential Executive orders. Certain
transactions with sanctioned countries
may be permitted but may require a
license from OFAC and/or the
Department of Commerce’s Bureau of
Industry and Security (BIS). Currently,
most transactions involving Cuba, Iran,
and Sudan are prohibited. In order to
comply with the U.S. export laws and
regulations, providers must first
determine whether a given transaction
with a sanctioned country is permitted,
and, if not permitted without a license
or approval, obtain any appropriate
export licenses or other U.S.
Government permissions prior to
exporting any product to sanctioned
countries.
According to U.S. regulations, no U.S.
persons or entities may conduct
transactions with individuals or entities
on the SDN List without a license from
OFAC. This list is maintained by OFAC.
OFAC only provides a license to deal
with individuals on the SDN List in
extremely limited circumstances.12
According to U.S. regulations, no U.S.
persons or entities may conduct
business transactions with individuals
sanctioned by the Department of State
14 Visit https://www.treas.gov/offices/enforcement/
ofac/legal/statutes/ieepa.pdf for additional
information.
15 Visit https://www.treas.gov/offices/enforcement/
ofac/legal/statutes/twea.pdf for additional
information.
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for engaging in proliferation
activities.13
Some products may not have a
specific number on the CCL and so will
be designated as EAR99 for export
purposes. Items designated as EAR99 do
not require a license unless they are
exported to countries on the embargoed
list, to banned individuals, or for
prohibited end-uses. As a result, before
filling an international order for any
dsDNA product that cannot be
classified under an Export Control
Classification Number (ECCN),
providers must consult several lists of
such individuals and organizations
according to the EAR.4 If the customer
appears on any of these lists, additional
action is required and an export license
may be necessary, depending on the
list.16 These lists include the DPL, the
Entity List (EL),17 and the Unverified
List (UL).18
In addition to the SDN List and
proliferation sanctions notifications,
providers must not conduct business
with persons and entities on the DPL
based on the EAR.4 The DPL includes
parties that have been denied export
and reexport privileges.
In accordance with the EAR, exports
to persons or entities on the EL require
an export license.4 17 The EL contains a
list of names of certain international
persons—including businesses, research
institutions, government and private
organizations, individuals, and other
types of legal persons—that are subject
to specific license requirements for the
export, reexport and/or transfer (incountry) of specified items. On an
individual basis, the persons on the EL
are subject to licensing requirements
and policies supplemental to those
found elsewhere in the EAR.
The presence of a party on the UL in
a transaction is a ‘‘red flag’’ that should
be resolved before proceeding with the
transaction. 4 18 The UL includes names
and countries of foreign persons who in
the past were parties to a transaction
with respect to which BIS could not
conduct a pre-license check (PLC) or a
post-shipment verification (PSV) for
reasons outside of the U.S.
Government’s control. Additional ‘‘red
flags’’ can be found in Supplement No.
3 to Part 732 of the EAR.
To avoid violating U.S. laws and
regulations, providers should consult
16 A general review of export control basics is
available at https://www.bis.doc.gov/licensing/
exportingbasics.htm.
17 The Entity List is found in Supplement No. 4
to Part 744 of the EAR and can be found on the Web
site https://www.bis.doc.gov/entities/default.htm. It
is updated periodically.
18 The Unverified List is found on the Web site
https://www.bis.doc.gov/enforcement/unverifiedlist/
unverified_parties.html. It is updated periodically.
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these lists whenever an international
customer places an order. Because the
updated lists are available online,
providers should ensure they are using
the most recently updated lists when
screening customers or principal users
against these lists.
Additionally, U.S. persons or entities
may not export, reexport, or transfer
(in-country) an item subject to the EAR
without a license if, at the time of
export, reexport, or transfer (incountry) the exporter knows that the
item will be used in the design,
development, production, stockpiling,
or use of biological weapons in or by
any country or destination, worldwide.
If any of these checks reveals cause
for concern, the provider should
proceed according to the details
provided in Section VII.
If an order involves an export,
according to the EAR, both the provider
and customer are required to maintain
documentary evidence of the
transaction and are prohibited from
misrepresenting or concealing material
facts in licensing processes and all
export control documents.4
If customer screening raises any
concerns, providers should conduct
follow-up screening.
2. Sequence Screening
Providers should also perform
sequence screening. The U.S.
Government reminds providers to
conduct sequence screening on orders
from international customers to
determine whether they are governed by
and to ensure compliance with the
EAR.4
The U.S. Government recommends
that, in addition to screening for
sequences unique to Select Agents and
Toxins, providers use a ‘‘Best Match’’
approach to identify sequences unique
to pathogens, toxins, and genetic
elements on the CCL when an order is
placed by an international customer. If
the ordered dsDNA is controlled under
ECCN 1C353 (which covers genetic
elements and genetically modified
organisms) and is capable of encoding
a protein, an export license is necessary
for all international orders, according
to the EAR.4 Because the EAR’s CCL
and the Select Agents and Toxins lists
are not identical, it is recommended
that providers ensure that international
orders are screened to identify
sequences unique to Select Agents and
Toxins and CCL-listed items.
If a ‘‘sequence of concern’’ is
identified, providers should conduct
follow-up screening.
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VII. Contacting the U.S. Government
In cases where follow-up screening
cannot resolve an issue raised by either
customer screening or sequence
screening, the U.S. Government
recommends that providers contact one
of the following agencies for further
information:
Federal Bureau of Investigation (FBI)
If an order raises concerns based on
customer screening or sequence
screening and follow-up screening does
not sufficiently verify the customer’s
identity, the principal user’s identity,
and the order’s intended end-use,
providers should contact the Weapons
of Mass Destruction (WMD) Coordinator
at their nearest FBI Field Office.
Providers should also contact the WMD
Coordinator if follow-up screening
reveals that the customer or principal
user has no legitimate need for the
order.
CDC and APHIS Select Agent
Regulatory Programs (Select Agent
Programs)
If necessary, the CDC and APHIS
Select Agent regulatory programs can be
contacted through the national Select
Agent Web site (https://
www.selectagents.gov). The CDC
program can be contacted directly via
e-mail at lrsat@cdc.gov or by fax at 404–
718–2096. The APHIS program can be
contacted directly via e-mail at
Agricultural.Select.Agent.Program
@aphis.usda.gov or by fax at 301–734–
3652.
Department of Commerce
If sequence screening reveals that an
order from an international customer
contains a Select Agent or ‘‘sequence of
concern,’’ providers should contact the
nearest field office of the Department of
Commerce’s Office of Export
Enforcement. Providers should also
contact the Office of Export
Enforcement if they receive an
international order from a country
currently subject to a U.S. trade embargo
or a customer or principal user that is
on one of the proscribed lists described
in Section VI. The Department of
Commerce will contact other U.S.
Government agencies as necessary. The
supervisory office is in Washington, DC
and the phone number is 202–482–
1208. Locations and contact information
for all field offices are available at
https://www.bis.doc.gov/about/program
offices.htm. Assistance from an export
counselor at the Department of
Commerce is available by calling 202–
482–4811.
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Scenarios
If providers encounter one of the
following scenarios and are unable to
resolve issues raised by customer
screening or sequence screening, they
can contact one of the following U.S.
Government agencies for assistance,
using the contact information provided
above:
1. Provider receives synthetic dsDNA
order and a customer flag (suspicious
customer) is identified in customer
screening. Follow-up screening does not
resolve the concerns. Recommend the
provider contact the nearest FBI Field
Office WMD Coordinator. FBI contacts
other Departments and Agencies, as
appropriate.
2. Provider receives a synthetic
dsDNA order that is for a Select Agent
or Toxin. Provider should refer to the
Select Agent Regulations and follow
necessary protocols. If necessary, the
provider should contact the appropriate
Select Agent Program (CDC or APHIS).
a. CDC or APHIS may contact FBIHQ
as appropriate.
3. Provider receives a synthetic
dsDNA order that incorporates a
‘‘sequence of concern;’’ follow-up
screening reveals no legitimate
purpose 11 for order or research
requirement. Provider should contact
the FBI WMD Coordinator. FBI contacts
the CDC or APHIS as appropriate.
4. Provider receives an international
synthetic dsDNA order incorporating a
Select Agent or Toxin or a ‘‘sequence of
concern’’ and DOC denies the export
license. DOC contacts the FBI as
appropriate.
5. Provider receives a synthetic
dsDNA order from a customer that is
listed on one or more restricted lists,
which prohibits the fulfillment of the
order. Provider should contact the FBI
WMD Coordinator. FBI contacts DOC as
appropriate.
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VIII. Customer and Sequence Screening
Software and Expertise
There are a variety software packages
that can assist with the verification of
customers (and principal users, if
necessary) and screening against the
necessary lists of proscribed entities.
Providers should be aware that
commercially available software
packages may not necessarily address
all aspects of customer screening
recommended by the U.S. Government.
In addition to a sequence database
and screening method, appropriate
sequence screening software must be
selected by providers of synthetic
dsDNA. The U.S. Government
recommends that providers select a
sequence screening software tool that
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utilizes a local sequence alignment
technique; a popular and publicly
available suite of algorithms that meets
this requirement is the BLAST family of
tools, and other tools are available.
BLAST is available for download for
free at the National Center for
Biotechnology Information Web site.19
Similar tools are also freely or
commercially available, or could be
designed by the provider to meet their
sequence screening needs. Specific
criteria for the statistical significance of
the hit (BLAST’s e-values) or percent
identity values will not be
recommended because these details
depend on the specific screening
protocol. By utilizing the ‘‘Best Match’’
approach, the sequence with the greatest
percent identity over each 66 amino
acid or 200 bp fragment should be
considered the ‘‘Best Match,’’ regardless
of the statistical significance or percent
identity.
The U.S. Government recommends
that providers of synthetic dsDNA have
the necessary expertise in-house to
perform the sequence screenings,
analyze the results and conduct the
appropriate follow-up research to
evaluate the significance of dubious
sequence matches. Such follow-up
research could include comparing the
ordered sequence to information found
in the published literature about Select
Agents and Toxins (or, when applicable,
items on the CCL) or with information
found in other databases of Select
Agents and Toxins (or items on the
CCL).
The U.S. Government recognizes that
continued research and development on
new and improved bioinformatics tools
is desirable. As new methods are
developed, U.S. Guidance may change
accordingly.
current should be maintained for at
least eight years.
• Keep screening records of all ‘‘hits’’
for at least eight years, even if the order
was deemed acceptable.
• Develop, maintain, and document
their sequence screening protocols
within company records; protocols that
are no longer current should be
maintained for at least eight years.
• Retain records of any follow-up
screening, even if the order was
ultimately filled, for at least eight years.
If an order involves an export,
according to the EAR, both the provider
and customer are required to maintain
documentary evidence of the
transaction and are prohibited from
misrepresenting or concealing material
facts in licensing process and all export
control documents.4
IX. Records Retention
The U.S. Government recommends
that providers:
• Retain records of customer orders
for at least eight years based on the
statute of limitations set forth by U.S.
Code of Federal Crimes and
Procedures, Title 18 Section 3286.7
• Archive the following information:
Customer information (point-of contact
name, organization, address, and phone
number), order sequence information
(nucleotide sequences ordered, vector
used), and order information (date
placed and shipped, shipping address,
and receiver name).
• Develop, maintain, and document
protocols to determine if a sequence
‘‘hit’’ qualifies as a true ‘‘sequence of
concern;’’ protocols that are no longer
The U.S. Government recommends
that, for every order, providers of
synthetic dsDNA:
(1) Gather the following information
to verify a customer’s identity:
• Customer’s full name and contact
information.
• Billing address and shipping
address (if not the same).
• Customer’s institutional or
corporate affiliation (if applicable).
(2) Screen customers against several
lists of proscribed entities (described in
Section VI).
In cases where the customer is not
affiliated with an institution or firm, the
U.S. Government recommends that the
provider conduct follow-up screening.
If a review of customer information
reveals one or more ‘‘red flags,’ the U.S.
Government recommends that providers
conduct follow-up screening.
19 https://blast.ncbi.nlm.nih.gov/Blast.cgi.
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X. Appendix to Screening Framework
Guidance for Providers of Synthetic
Double-Stranded DNA
Summary of Recommendations
The field of synthetic genomics is
evolving rapidly. This document is
intended to provide guidance to
providers of synthetic double-stranded
DNA (dsDNA) regarding the screening
of orders so that they are filled in
compliance with current U.S.
regulations and to encourage best
practices in addressing biosecurity
concerns associated with the potential
misuse of their products to bypass
existing regulatory controls. The U.S.
Government recommends that all orders
of synthetic dsDNA be subject to a
screening framework that incorporates
both sequence screening and customer
screening.
Customer Screening
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Sequence Screening
The U.S. Government recommends
that:
• Ordered sequences be screened
using a ‘‘Best Match’’ approach to
identify sequences that are unique to
Select Agents and Toxins.
• For international orders, ordered
sequences be screened using a ‘‘Best
Match’’ approach to identify sequences
that are unique to pathogens, toxins,
and genetic elements on the Commerce
Control List (CCL), in addition to
screening for sequences that are unique
to Select Agents and Toxins.
• Sequence screening be performed
for both DNA strands and the resultant
polypeptides derived from translations
using the three alternative reading
frames on each DNA strand (or sixframe translation).
• Sequence alignment methods
should enable the detection of any
‘‘sequences of concern’’ in a dsDNA
order.
• In order to ensure that ‘‘sequences
of concern’’ embedded within larger
sequences are not overlooked, when
screening orders longer than 200 bps,
providers should use screening
techniques able to detect ‘‘sequences of
concern’’ as short as 200 bps in length.
If a customer orders a synthetic
dsDNA product that meets the
definition of a Select Agent or Toxin,20
domestic providers and customers must
be in compliance with the CDC and
APHIS Select Agent Regulations (42
CFR part 73, 7 CFR part 331, and 9 CFR
part 121) in order to fill the order.
Follow-Up Screening
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Providers should conduct follow-up
screening if sequence screening or
customer screening raises any concerns.
In follow-up screening, the U.S.
Government recommends that providers
ask for information about the customer
and principal user, including the
proposed end-use of the order, to help
assess the legitimacy of their order.
Providers should gather the following
information to verify a principal user’s
identity:
• Principal user’s full name and
contact information.
• Billing address and shipping
address (if not the same).
• Principal user’s institutional or
corporate affiliation (if applicable).
20 Please
see https://www.selectagents.gov to
access the most recent Select Agents and Toxins
lists. The CDC/APHIS national Select Agent registry
Web site (https://www.selectagents.gov) contains a
guidance document entitled ‘‘Applicability of the
Select Agent Regulations to Issues of Synthetic
Genomics’’ to assist providers in identifying
synthetically derived Select Agent materials that
would fall under the current regulations.
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If the customer or principal user is
associated with an institution or firm,
providers should contact the relevant
biological safety officer, supervisor, lab
director, director of research, or other
relevant institutional representative to
confirm the order, verify the customer’s
and principal user’s identity, and verify
the legitimacy of the order. If the
customer or principal user is not
affiliated with an institution or firm,
providers should also conduct a
literature review of the customer’s or
principal user’s past research to verify
his or her identity and the legitimacy of
the order. If a literature review results
in no publications, providers should
request the unaffiliated customer or
principal user provide references that
can verify their identity and the
legitimacy of the order. Additionally,
providers should screen principal users
against several lists of proscribed
entities (described in Section VI), if this
step wasn’t already performed as part of
customer screening.
Domestic Orders
The U.S. Government reminds
providers of the following:
• According to U.S. regulations, no
U.S. persons or entities may conduct
transactions with individuals or entities
on the list of Specially Designated
Nationals and Blocked Persons (SDN
List) without a license from the
Department of the Treasury Office of
Foreign Assets Control (OFAC).21
• According to U.S. regulations, no
U.S. persons or entities may conduct
business transactions with individuals
sanctioned by the Department of State
for engaging in proliferation activities.22
The U.S. Government recommends
that providers check domestic
customers against the most recent
Department of Commerce Denied
Persons List (DPL).23
In order to avoid violating U.S. law,
providers are encouraged to check the
customer against the most recent
versions of these lists of proscribed
entities before filling each order.
International Orders
The U.S. Government reminds
providers of the following:
• All providers who export products
from the United States to international
21 Additional information, including the SDN
List, is available at: https://www.treas.gov/offices/
enforcement/ofac/sdn/.
22 Announcements of such sanctions
determinations are printed in the Federal Register
and are maintained on the Department of State’s
Web site (https://www.state.gov/t/isn/c15231.htm).
23 Visit https://www.access.gpo.gov/bis/ear/
ear_data.html to access the most recent Commerce
Control List and review the Export Administration
Regulations.
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62831
customers must comply with the U.S.
export laws, including the International
Emergency Economic Powers Act
(IEEPA),24 the Trading with the Enemy
Act,25 and any implementing U.S.
Government regulations or Presidential
Executive Orders. Certain transactions
with sanctioned countries may be
permitted, but most require a license
from OFAC and/or the Department of
Commerce’s Bureau of Industry and
Security (BIS). Most transactions
involving Cuba, Iran, and Sudan are
prohibited. In order to comply with the
U.S. export laws and regulations,
providers must first determine whether
a given transaction with a sanctioned
country is permitted, and, if not
permitted without a license or approval,
obtain any appropriate export licenses
or other U.S. Government permissions
prior to exporting any product to
sanctioned countries.
• According to U.S. regulations, no
U.S. persons or entities may conduct
business transactions with individuals
and entities on the SDN List without a
license from OFAC.21
• According to U.S. regulations, no
U.S. persons or entities may conduct
business transactions with individuals
sanctioned by the Department of State
for engaging in proliferation activities.22
• The Export Administration
Regulations (EAR) require that providers
have an export license from BIS prior to
exporting a synthetic nucleic acid that
is controlled by an Export Control
Classification Number (ECCN) and is
capable of encoding a protein.23
• U.S. persons or entities may not
export, reexport, or transfer (in-country)
an item subject to the EAR without a
license if, at the time of export, reexport,
or transfer (in-country) the exporter
knows that the item will be used in the
design, development, production,
stockpiling, or use of biological
weapons in or by any country or
destination, worldwide.23
• In accordance with the EAR,
providers must not conduct business
with persons and entities on the DPL.23
• In accordance with the EAR,
exports to persons or entities on the
Entity List require an export license and
are subject to licensing requirements
and policies in addition to those
elsewhere in the EAR.26
24 Visit https://www.treas.gov/offices/enforcement/
ofac/legal/statutes/ieepa.pdf for additional
information.
25 Visit https://www.treas.gov/offices/enforcement/
ofac/legal/statutes/twea.pdf for additional
information.
26 The Entity List is found in Supplement No. 4
to Part 744 of the EAR and can be found on the
website https://www.bis.doc.gov/entities/
default.htm. It is updated periodically.
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• The presence of a party on the UL
in a transaction is a ‘‘red flag’’ that
should be resolved before proceeding
with the transaction.27
• In accordance with the EAR, if an
order involves an export, both the
provider and customer are required to
maintain documentary evidence of the
transaction and are prohibited from
misrepresenting or concealing material
facts in licensing processes and all
export control documents.23
In order to avoid violating U.S. laws
and regulations, providers are
encouraged to check the international
customer against the most recent
versions of these lists of proscribed
entities before filling each order.
The U.S. Government recommends
that providers utilize a ‘‘Best Match’’
approach to identify sequences unique
to pathogens, toxins, and genetic
elements on the Commerce Control List
for international orders, as well as
identifying sequences unique to Select
Agent and Toxins.
Contacting the U.S. Government
In cases where follow-up screening
cannot resolve concerns raised by either
customer screening or sequence
screening, or when providers are
otherwise unsure about whether to fill
an order, the U.S. Government
recommends that providers contact
relevant agencies as described in
Section VII.
Customer and Sequence Screening
Software and Expertise
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BILLING CODE 4150–37–P
DEPARTMENT OF HEALTH AND
HUMAN SERVICES
Proposed Data Collections Submitted
for Public Comment and
Recommendations
The U.S. Government recommends
that providers:
• Retain records of customer orders
for at least eight years based on the
statute of limitations set forth by U.S.
27 The Unverified List is found on the Web site
https://www.bis.doc.gov/enforcement/unverifiedlist/
unverified_parties.html. It is updated periodically.
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[FR Doc. 2010–25728 Filed 10–12–10; 8:45 am]
[60 Day–10–0666]
Records Retention
17:22 Oct 12, 2010
Dated: October 6, 2010.
Kathleen Sebelius,
Secretary, U.S. Department of Health and
Human Services.
Centers for Disease Control and
Prevention
Providers should be aware that
commercially available customer
screening software packages may not
necessarily address all aspects of
customer screening recommended by
the U.S. Government.
The U.S. Government recommends
that:
• Providers select a sequence
screening software tool that utilizes a
local sequence alignment technique.
• Providers have the necessary
expertise in-house to perform the
sequence screenings, analyze the
results, and conduct the appropriate
follow-up research to evaluate the
significance of dubious sequence
matches.
VerDate Mar<15>2010
Code of Federal Crimes and Procedures,
Title 18 Section 3286.28
• Archive the following information:
customer information (point-of-contact
name, organization, address, and phone
number), order sequence information
(nucleotide sequences ordered, vector
used), and order information (date
placed and shipped, shipping address,
and receiver name).
• Develop, maintain, and document
protocols to determine if a sequence
‘‘hit’’ qualifies as a true ‘‘sequence of
concern;’’ protocols that are no longer
current should be maintained for at least
eight years.
• Keep screening records of all ‘‘hits’’
for at least eight years, even if the order
was deemed acceptable.
• Develop, maintain, and document
their sequence screening protocols
within company records; protocols that
are no longer current should be
maintained for at least eight years.
• Retain records of any follow-up
screening, even if the order was
ultimately filled, for at least eight years.
In compliance with the requirement
of Section 3506(c)(2)(A) of the
Paperwork Reduction Act of 1995 for
opportunity for public comment on
proposed data collection projects, the
Centers for Disease Control and
Prevention (CDC) will publish periodic
summaries of proposed projects.
Alternatively, to obtain a copy of the
data collection plans and instrument,
call 404–639–5960 and send comments
to Carol E. Walker, Acting CDC Reports
Clearance Officer, 1600 Clifton Road
NE., MS–D74, Atlanta, Georgia 30333;
28 Section 3286 specifies that no person shall be
prosecuted, tried, or punished for any noncapital
offense involving certain violations unless the
indictment is found or the information is instituted
within 8 years after the offense was committed.
This statute of limitations applies to Title 18
Section 175(b) (possession of biological agents with
no reasonable justification).
PO 00000
Frm 00078
Fmt 4703
Sfmt 4703
comments may also be sent by e-mail to
omb@cdc.gov.
Comments are invited on (a) whether
the proposed collection of information
is necessary for the proper performance
of the functions of the agency, including
whether the information will have a
practical utility; (b) the accuracy of the
agency’s estimate of the burden of the
proposed collection of information; (c)
ways to enhance the quality, utility, and
clarify of the information to be
collected; and (d) ways to minimize the
burden of the collection of information
on respondents, including through the
use of information technology. Written
comments should be received within 60
days of this notice.
Proposed Project
National Healthcare Safety Network
(NHSN) (OMB No. 0920–0666 exp. 3/
31/2012)—Revision—National Center
for Emerging and Zoonotic Infectious
Diseases (NCEZID), Centers for Disease
Control and Prevention (CDC).
Background and Brief Description
The National Healthcare Safety
Network (NHSN) is a system designed to
accumulate, exchange, and integrate
relevant information and resources
among private and public stakeholders
to support local and national efforts to
protect patients and to promote
healthcare safety. Specifically, the data
is used to determine the magnitude of
various healthcare-associated adverse
events and trends in the rates of these
events among patients and healthcare
workers with similar risks. The data will
be used to detect changes in the
epidemiology of adverse events
resulting from new and current medical
therapies and changing risks. The NHSN
consists of four components: Patient
Safety, Healthcare Personnel Safety,
Biovigilance, and eSurveillance. In
general, the data reported under the
Patient Safety Component protocols are
used to (1) determine the magnitude of
the healthcare-associated adverse events
under study, trends in the rates of the
events, in the distribution of pathogens,
and in the adherence to prevention
practices, and (2) to detect changes in
the epidemiology of adverse events
resulting from new medical therapies
and changing patient risks.
Additionally, reported data will be used
to describe the epidemiology of
antimicrobial use and resistance and to
understand the relationship of
antimicrobial therapy to this growing
problem. Under the Healthcare
Personnel Safety Component protocols,
data on events—both positive and
adverse—are used to determine (1) the
magnitude of adverse events in
E:\FR\FM\13OCN1.SGM
13OCN1
Agencies
[Federal Register Volume 75, Number 197 (Wednesday, October 13, 2010)]
[Notices]
[Pages 62820-62832]
From the Federal Register Online via the Government Printing Office [www.gpo.gov]
[FR Doc No: 2010-25728]
=======================================================================
-----------------------------------------------------------------------
DEPARTMENT OF HEALTH AND HUMAN SERVICES
Office of the Secretary
Screening Framework Guidance for Providers of Synthetic Double-
Stranded DNA
AGENCY: Department of Health and Human Services, Office of the
Secretary.
ACTION: Notice.
-----------------------------------------------------------------------
Authority: Public Health Service Act, 42 U.S.C. 241, Section
301; HSPD-10.
SUMMARY: To reduce the risk that individuals with ill intent may
exploit the application of nucleic acid synthesis technology to obtain
genetic material derived from or encoding Select Agents or Toxins and,
as applicable, agents on the Export Administration Regulations' (EAR's)
Commerce Control List (CCL), the U.S. Government has developed Guidance
that provides a framework for screening synthetic double-stranded DNA
(dsDNA). This document, the Screening Framework Guidance for Providers
of Synthetic Double-Stranded DNA (the Guidance), sets forth recommended
baseline standards for the gene and genome synthesis industry and other
providers of synthetic dsDNA products regarding the screening of orders
so that they are filled in compliance with current U.S. regulations and
to encourage best practices in addressing biosecurity concerns
associated with the potential misuse of their products to bypass
existing regulatory controls. Following this Guidance is voluntary,
though many specific recommendations serve to remind providers of their
obligations under existing regulations. The framework includes customer
screening and sequence screening, follow-up screening as necessary, and
consultation with U.S. Government contacts, as needed.
A draft version of the Guidance was published as a Federal Register
Notice (Federal Register, Vol. 74, No. 227, November 27, 2009,
Screening Framework Guidance for Synthetic Double-Stranded DNA
Providers) for public consideration and comment for a period of 60
days. Comments were reviewed and the Guidance was amended through a
deliberative interagency process. The Response to Public Comments
document, which precedes the final Guidance in the Supplementary
Information section of this Notice, provides a general review of the
decisions made to alter the Guidance in response to public comments.
The Department of Health and Human Services (HHS) is issuing this
document as the lead agency in a broad interagency process to draft the
Guidance. The Guidance will be reviewed on a regular basis and revised,
as necessary. For further details about the Guidance, to access public
comments, and to provide ongoing feedback please refer to https://www.phe.gov/preparedness/legal/guidance/syndna.
DATES: The Guidance is effective on October 13, 2010.
FOR FURTHER INFORMATION CONTACT: Jessica Tucker, PhD, Office of Policy
and Planning, Office of the Assistant Secretary for Preparedness and
Response, U.S. Department of Health
[[Page 62821]]
and Human Services, 330 C Street, SW., Room 3021K, Washington, DC
20201; phone: 202-260-0632; fax: 202-205-8674; Web site: https://www.phe.gov/preparedness/legal/guidance/syndna.
SUPPLEMENTARY INFORMATION:
Response to Public Comments on Draft Screening Framework Guidance for
Synthetic Double-Stranded DNA Providers
I. Summary
The draft Guidance document was posted as a Federal Register Notice
on November 27, 2009, for a period of 60 days for public comment.
Twenty-two individual responses were received during this time period.
The American Association for the Advancement of Science hosted a
meeting to solicit the views of scientists, the public, and stakeholder
communities on January 11, 2010 during the public comment period; the
summary report from this meeting was submitted as a formal comment.
Public comments are available at the following Web site: https://www.phe.gov/preparedness/legal/guidance/syndna.
An interagency working group of Federal Government representatives
was established to review and consider the public comments that were
received; these comments informed the changes made in the final version
of the Guidance. In general, public comments were received in the areas
of customer screening, customer concerns, follow-up screening, and
sequence screening, though some comments fell outside these categories.
This Response to Public Comments document provides a general review of
the decisions made to alter the Guidance in response to public comments
in these thematic areas.
A. Customer Screening and Customer Concerns
The draft Guidance includes recommendations for providers to screen
against a number of different lists of proscribed entities; the lists
to screen against differ depending on whether the order is placed by a
domestic or international customer. Regarding these recommendations,
several comments indicated a desire for a list that combines these
proscribed entities (or alternatively, for a list of ``approved''
customers). No changes were made in response to these comments. The
indicated lists exist under several different legal authorities and are
maintained by different government bodies. In order to ensure that
providers are referencing the most up-to-date versions of these lists,
the U.S. Government continues to recommend that providers consult the
primary sources.\a\ A list of ``approved'' customers is not practicable
as it would have to be updated very frequently, given the emergence of
new legitimate customers on a regular basis, and it would require that
companies share their customer lists. Customers and providers should be
aware, however, that there are some software packages available that
may address these requests for a centralized database of consolidated
lists.
---------------------------------------------------------------------------
\a\ The Department of Commerce maintains consolidated links to
many of these lists on the following Web site: https://www.bis.doc.gov/complianceandenforcement/liststocheck.htm.
Additionally, the ``EAR Marketplace'' also includes consolidated
links to lists: https://bxa.ntis.gov/prohib.html.
---------------------------------------------------------------------------
Several comments were received regarding the list of ``red flags''
outlined in Section V.A.2 of the Guidance. Some respondents requested
more guidance regarding how to respond to ``red flags'' raised in the
customer screening process. To address these concerns, the Guidance now
clarifies that follow-up screening is recommended whenever any `red
flag' raises cause for concern. Additionally, several respondents
requested the deletion of the following `red flag' which appeared in
the draft Guidance: ``An unusually large order of DNA sequences,
including larger than normal quantities, the same order placed several
times, or several orders of the same sequence made in a short
timeframe.'' Some customers and providers have indicated that such
orders are a regular part of doing business and do not pose cause for
concern. The U.S. Government agrees with these assessments.
Accordingly, this `red flag' has been deleted from the final Guidance
text.
Several comments also indicated that ``customers'' are not always
equivalent to ``end users,'' and these respondents indicated that the
Guidance should be clearer in advising providers to request information
about the ``end user.'' In response to these comments, the final
Guidance has been amended to define ``customers'' and ``principal
users''; most initial customer screening is focused on customers, while
follow-up screening addresses both customers and principal users.
``Principal users'' was chosen rather than ``end users,'' to prevent
confusion with the Department of Commerce definition of ``end user''
vis-[agrave]-vis export control.
A few comments reflected an interest in altering the Guidance to
include a process for customers to contest denied orders. No changes
were made in response to these comments. Because providers of synthetic
double-stranded DNA (dsDNA) already have the right to deny an order for
multiple reasons, including issues unrelated to biosecurity concerns, a
process to contest denied orders is not offered in this Guidance.
Finally, a couple of comments indicated that customers should be
notified when their orders raised any cause for concern. In follow-up
screening, it is recommended that customers be contacted for additional
information about their order when there is cause for concern, so
customers will be made aware if their order raises a `red flag' for the
provider. Therefore, no changes were made in response to these
comments.
B. Follow-Up Screening
A few comments requested additional clarity or recommendations
regarding vetting orders that are placed by an individual within a
larger organization or entity. As a result, the follow-up screening
section has now been amended to include examples of steps that might be
taken to address orders from customers that are organizations or
principal users that are affiliated with a larger organization.
Additionally, because a couple of comments indicated that unaffiliated
customers or principal users may not have a publication record, an
additional option was provided for vetting unaffiliated customers/
principal users wherein the customer/principal user may provide
references that can verify their identity and the legitimacy of the
order.
C. Sequence Screening
The topic that elicited the most public comments was sequence
screening. The issues raised can generally be separated into the
following themes: type/length of DNA to screen, sequences of concern,
and sequence screening methodology.
1. Type/Length of DNA to Screen
In the draft Guidance, the U.S. Government recommended that orders
of synthetic dsDNA 200 base pairs (bps) and longer should be subject to
a screening framework. A number of public comments critiqued this
recommendation, while a few comments supported this recommendation as
reasonable. Some comments stated that 200 bps is too small to be
practical for providers to implement, and recommended screening
sequences 1 kilobase pair (kbp) and longer. A larger number of comments
stated that a 200 bp limit is not scientifically justified, and argued
that because most providers already screen all synthetic dsDNA orders,
the 200 bp limit should be eliminated. Finally, a small number of
comments recommended that oligonucleotides, in addition to dsDNA,
should be included in a screening
[[Page 62822]]
framework. The U.S. Government agrees that a 200 bp limit is not
scientifically justified and that most providers already screen all
dsDNA orders. Therefore, the recommendation to eliminate the 200 bp
limit was adopted, and the final Guidance now recommends that all dsDNA
orders should be screened. Because crafting ``agents of concern'' using
dsDNA via de novo synthesis is still easier than by using single-
stranded oligonucleotides, dsDNA is the focus of this screening
framework. Additionally, it is likely that implementing a screening
framework would pose a significant burden for providers of
oligonucleotides. Nonetheless, given the rapid developments in DNA
synthesis, the U.S. Government will continue to examine this issue and
may make amendments accordingly.
2. ``Sequences of Concern''
A number of comments noted that many sequences that are not unique
to Select Agents and Toxins may pose a biosecurity risk, but that only
those sequences unique to Select Agents and Toxins (and, for
international orders, those sequences unique to items on the Commerce
Control List (CCL)) are characterized as ``sequences of concern''
within the draft Guidance. Additionally, several comments noted that
non-Select Agent homologs that are closely related to a Select Agent
virulence factor or pathogenicity gene could potentially be ordered and
then substituted for the Select Agent sequence. These comments
variously recommended that the Guidance adopt a broader definition of
``sequences of concern,'' establish a curated database of virulence
genes and ``other dangerous sequences,'' and/or adopt a ``Top
Homology'' screening approach (see discussion of Screening Methodology
below).
The U.S. Government recognizes that there are concerns that
synthetic dsDNA sequences not unique to Select Agents or Toxins or CCL
items may also pose a biosecurity concern. However, a robust screening
framework that can be consistently implemented from provider to
provider requires a clear set of criteria for identifying non-Select
Agent or Toxin (or non-CCL) ``sequences of concern.'' Due to the
complexity of determining whether a specific sequence corresponds to a
virulence factor or pathogenicity gene or otherwise poses a biosecurity
risk, and because current knowledge of virulence and pathogenicity is
limited, it is not currently possible to develop clear criteria that
providers could use to robustly, comprehensively, and consistently
identify non-Select Agent and Toxin or non-CCL ``sequences of concern''
based on virulence, pathogencity, or ``other danger.''
In addition, many pathogens and toxins not listed on the Select
Agents and Toxins lists and the CCL could nearly as easily be obtained
through other means. The Select Agents and Toxins lists and the CCL are
well-defined lists of high consequence pathogens and toxins that have
the potential to pose a severe threat to human, animal, or plant
health. Finally, the agents on the Select Agents and Toxins lists and
the CCL are most relevant for these purposes because a primary goal is
to prevent access to agents otherwise subject to existing regulations.
Consequently, in the final Guidance, the U.S. Government continues
to define ``sequences of concern'' as those sequences unique to Select
Agents and Toxins (and those sequences unique to items on the CCL for
international orders).
The sequence screening recommendations contained in this Guidance
do not preclude the use of curated databases or the development of
robust criteria that can consistently identify non-Select Agent and
Toxin or non-CCL sequences that may pose a biosecurity risk. The U.S.
Government encourages the continued development of such databases and
criteria as additional screening tools that will improve with time as
additional data becomes available. To advance knowledge in this arena,
the National Academies is conducting a study that will identify the
scientific advances necessary to predict biological function from
nucleic acid sequences for oversight of Select Agents.
3. Screening Methodology
Many of the comments on screening methodology echoed issues raised
in defining ``sequences of concern.'' A number of comments criticized
the ``Best Match'' approach to screening, arguing that it is easily
circumvented and less robust than some current industry screening
practices, and proposed either screening against a centralized, curated
database of ``sequences of concern'' or adopting a ``Top Homology''
approach. The curated database approach is potentially very efficient,
but requires the creation of databases identifying specific features
such as known pathogenic sequences, virulence factors, house-keeping
genes, etc. While the acquisition of such knowledge is progressing, at
this time it is not possible to provide a robust database that would
identify all or even most such sequences.
In the ``Top Homology'' approach, human screeners examine all
sequences that exceed a certain threshold of homology to a dsDNA order
to determine whether or not the matching sequences are derived from
Select Agents and Toxins or from genes variously described in public
comments as ``genes that can be intentionally abused,'' ``risk-
associated'' genes, or genes that ``code for virulence or other threat
characteristics.'' This approach shares some similarities with ``Best
Match,'' though the ``Top Homology'' approach considers all sequences
that exceed a certain threshold and ``Best Match'' considers the top
``hit.'' As with the customized database approach, a ``Top Homology''
approach could not be meaningfully implemented without a clear set of
effective criteria for determining in a consistent and non-arbitrary
manner when an order should trigger further customer review. However,
the clear and effective criteria needed to make such an approach work
are difficult to determine. The ``Best Match'' approach flags only the
top ``hit,'' which meets the stated goal of identifying sequences
unique to Select Agents and Toxins (and, for international orders,
sequences unique to items on the CCL).
As a result, the U.S. Government continues to recommend the use of
the ``Best Match'' approach for screening. As stated above, the U.S.
Government recognizes that there are concerns that synthetic dsDNA
sequences not unique to Select Agents or Toxins or CCL items may also
pose a biosecurity concern. The U.S. Government also recognizes that
many providers have already instituted measures to address these
concerns. The Guidance sets forth recommended baseline standards for
providers regarding the screening of orders so they are filled in
compliance with current U.S. regulations and to encourage best
practices in addressing biosecurity concerns. As such, the ongoing
development of best practices in this area is commendable and
encouraged, particularly in light of the continued advances in DNA
sequencing and synthesis technologies and the accelerated rate of
sequence submissions to public databases such as GenBank.
Minor wording changes have been made to clarify or alter the
technical details of the screening methodology, including language to
address the high sequence similarity of some Select Agents and Toxins
with some attenuated strains of Select Agents and Toxins that have been
excluded from regulation. The U.S. Government recognizes that continued
research and
[[Page 62823]]
development may lead to new and improved screening methodologies. As
new methods are developed, U.S. guidance may change accordingly. In
addition, the sequence screening methodology recommendations contained
in this Guidance do not preclude the use of other screening approaches
that providers assess to be equivalent or superior to the ``Best
Match'' approach.
It is significant to note that sequence screening is simply a
trigger for further customer screening and decision-making and does not
by itself provide a basis for determining that filling an order is
likely to pose a threat.
Beyond ``Best Match'' comments, some public comments requested that
additional software screening recommendations be provided; for example,
software packages, additional screening parameters, etc. It is not the
policy of the U.S. Government to recommend specific, proprietary
software packages. As a result, additional screening parameters are not
provided as these details are specific to individual screening
packages. Finally, the recommendation to ``separately'' screen
international orders against both the Select Agents and Toxins lists
and the CCL that appeared in the draft Guidance was altered to indicate
that, for international orders, screening should cover the CCL in
addition to the Select Agents and Toxins lists. Whether these screens
are conducted separately or simultaneously is up to the provider.
D. Other Issues
In the draft Guidance, the screening framework indicated that
customer screening should precede sequence screening. Several comments
noted that the order of screening is irrelevant, as long as both
customer and sequence screening occur for every order. The U.S.
Government agrees with these comments, and has altered the final
Guidance to remove the recommendation that screening occur in a
particular order.
Finally, the recommendations in the draft Guidance were directed to
``commercial'' providers. Some comments indicated that the U.S.
Government should recommend that all providers of synthetic dsDNA
follow the recommended screening framework. The U.S. Government agrees
with these comments. In order to effectively meet biosecurity goals,
this recommendation was adopted, and the final Guidance is directed to
all providers of synthetic dsDNA. Accordingly, when the final Guidance
refers to ``orders'' of synthetic dsDNA, this term does not necessarily
imply a commercial transaction.
The Guidance will be reviewed on a regular basis and revised, as
necessary. The U.S. Government recognizes that as the technology, the
industry, and the nature of the biosecurity risk change, the Guidance
will have to be altered, accordingly.
Screening Framework Guidance for Providers of Synthetic Double-Stranded
DNA
I. Summary
Synthetic biology, the developing interdisciplinary field that
focuses on both the design and fabrication of novel biological
components and systems as well as the re-design and fabrication of
existing biological systems, is poised to become the next significant
transforming technology for the life sciences and beyond. Synthetic
biology is not constrained by the requirement of using existing genetic
material and thus has great potential to be used to generate organisms,
both currently existing and novel, including pathogens that could
threaten public health, agriculture, plants, animals, the environment,
or materiel. In the United States, many such pathogens, as well as
certain toxins, are defined by specific existing regulations: Namely,
the Select Agent Regulations (SAR) and, for international orders, the
Export Administration Regulations (EAR). To reduce the risk that
individuals with ill intent may exploit the application of nucleic acid
synthesis technology to obtain genetic material derived from or
encoding Select Agents or Toxins and, as applicable, agents on EAR's
Commerce Control List (CCL), the U.S. Government has developed Guidance
that provides a framework for screening synthetic double-stranded DNA
(dsDNA). This Guidance sets forth recommended baseline standards for
the gene and genome synthesis industry and other providers of synthetic
dsDNA products regarding the screening of orders so that they are
filled in compliance with current U.S. regulations and to encourage
best practices in addressing biosecurity concerns associated with the
potential misuse of their products to bypass existing regulatory
controls.
Following this Guidance is voluntary, though many specific
recommendations serve to remind providers of their obligations under
existing regulations. Briefly, upon receiving an order for synthetic
dsDNA, the U.S. Government recommends that providers perform customer
screening and sequence screening. If either customer screening or
sequence screening raises any concerns, providers should perform
follow-up screening. If follow-up screening does not resolve concerns
about the order or there is reason to believe a customer may
intentionally or inadvertently violate U.S. laws, providers should
contact designated entities within the U.S. Government for further
information and assistance. This Guidance also provides recommendations
regarding proper records retention protocols and screening software.
II. Introduction
Synthetic biology, unlike traditional recombinant DNA technology,
is not constrained by the requirement for existing genetic material.
This novel feature, along with rapid advances in DNA synthesis
technology and the open availability of pathogen genome sequence data,
has raised concerns in the scientific community, the dsDNA synthesis
industry, the U.S. Government, and the general public that individuals
with ill intent could exploit this technology for harmful purposes.
Within the U.S., microbial organisms and toxins that have been
determined to have the potential to pose a severe threat to public
health and safety, animal health, plant health, or animal or plant
products are regulated through the SAR, administered by the Department
of Health and Human Services/Centers for Disease Control and Prevention
(HHS/CDC) and the U.S. Department of Agriculture/Animal and Plant
Health Inspection Service (USDA/APHIS). The SAR sets forth requirements
for the possession, use, and transfer of listed agents. Additionally,
the EAR identifies agents and genomic sequences that require export
licenses from the United States. The directed synthesis of
polynucleotides could enable individuals not authorized to possess
Select Agents (or, for international orders, those items listed on the
CCL) to obtain them through transactions with providers of synthetic
dsDNA. Such synthesis obviates the need for access to the naturally
occurring agents or naturally occurring genetic material from these
agents, thereby greatly expanding the potential availability of these
agents.
The National Science Advisory Board for Biosecurity (NSABB) was
charged with identifying the potential biosecurity concerns raised by
the ability to synthesize Select Agents and providing advice on whether
current U.S. Government policies and regulations adequately cover the
de novo synthesis of Select Agents. Their report entitled Addressing
Biosecurity Concerns Related to the Synthesis of Select Agents was
formally transmitted to the U.S. Government in March 2007.
[[Page 62824]]
Federal Departments and Agencies with roles in life sciences research
and/or security deliberated over the NSABB recommendations and
identified a series of relevant policy actions targeted to promote risk
management, while seeking to minimize negative impacts upon scientific
progress or industrial development.
One of the formal policy actions charged Federal Departments and
Agencies to identify, evaluate, and support the establishment of a
screening infrastructure for use by providers and users of synthetic
nucleic acids while engaging stakeholders in industry and academia.
This document provides guidance to all providers of synthetic dsDNA
regarding a screening framework for synthetically-derived dsDNA orders.
Specific recommendations are in bold type throughout the text.
In the context of this Guidance, the following definitions are
applicable:
``Provider'' refers to the entity that synthesizes and distributes
dsDNA. A provider is understood to be an entity synthesizing dsDNA for
and distributing dsDNA to a customer, not a research scientist
collaborating with a colleague.\1\ ``Customer'' refers to the
individual or organization that orders or requests synthetic dsDNA from
a provider, and ``Principal user'' is the individual that receives and
ultimately uses the ordered or requested dsDNA.
---------------------------------------------------------------------------
\1\ Transfers of synthetic dsDNA should be evaluated for
conformance with the SAR and EAR even when dealing with
collaborating laboratories.
---------------------------------------------------------------------------
III. Goals of Guidance
The primary goal of the Guidance is to minimize the risk that
unauthorized individuals or individuals with malicious intent will
obtain ``toxins and agents of concern'' through the use of nucleic acid
synthesis technologies, and to simultaneously minimize any negative
impacts on the conduct of research and business operations. The
Guidance was developed, in light of providers' existing protocols, to
be implemented without unnecessary cost and to be globally extensible,
both for U.S.-based providers operating abroad and for international
providers.
Providers of synthetic dsDNA have two overriding responsibilities
in this context:
Providers should know to whom they are distributing a
product.
Providers should know if the product that they are
synthesizing and distributing contains, in part or in whole, a
``sequence of concern''.
The Guidance outlines a screening framework that will assist
providers in meeting both of these responsibilities. Though certain
guidance provided in this document is necessarily framed by U.S. policy
and regulations, the Guidance was composed so that fundamental goals,
provider responsibilities, and the screening framework could be
considered for application by the international community. In
particular, though the Select Agents and Toxins and the CCL-listed
items that are the primary focus of the Guidance may not be relevant
for all countries, the sequence screening framework can be applied to
other categories of agents and toxins that may be relevant for other
regions.\2\
---------------------------------------------------------------------------
\2\ The CCL items that are on the Australia Group Common Control
Lists are relevant for all Australia Group members (see https://www.australiagroup.net/en/).
---------------------------------------------------------------------------
IV. Overview: Synthetic dsDNA Screening Framework
Providers should establish a comprehensive and integrated screening
framework that includes both customer screening and sequence screening,
as well as follow-up screening when customer and/or sequence screening
raises a concern.
Customer Screening--The purpose of customer screening is
to establish the legitimacy of customers ordering synthetic dsDNA
sequences. Providers should develop customer screening mechanisms to
verify the legitimacy of a customer if the customer is an organization
or confirm customer identity if the customer is an individual, to
identify potential `red flags,' and to conform to U.S. trade
restrictions and export control regulations.
Sequence Screening--The purpose of sequence screening is
to identify when ``sequences of concern'' are ordered. Identification
of a ``sequence of concern'' does not necessarily imply that the order
itself is of concern. Rather, when a ``sequence of concern'' is
ordered, further follow-up procedures should be used to determine if
filling the order would raise concern. Sequence screening is
recommended for all dsDNA orders.
Follow-up Screening--The purpose of follow-up screening is
to verify the legitimacy of customers both at the level of the customer
and the principal user, to confirm that customers and principal users
placing an order are acting within their authority, and to verify the
legitimacy of the end-use.
Many customers will likely volunteer information about their
identity or the sequence they are ordering. Providers should
corroborate this information as part of their screening framework.
The following overall screening methodology is recommended:
1. Upon receiving an order for synthetic dsDNA, the U.S. Government
recommends that providers conduct both customer screening and sequence
screening. In customer screening, providers should review the
information provided by the customer to verify their corporate or
individual identity (as applicable), and to identify potential ``red
flags.'' Providers should also check customers against lists of denied
or blocked persons and entities maintained by the Departments of
Commerce, State, and Treasury.
In sequence screening, the U.S. Government recommends screening the
ordered sequence to identify sequences derived from or encoding Select
Agents and Toxins \3\ and, for international customers, providers
should also screen the ordered sequence to identify sequences derived
from or encoding items on the CCL.\4\ Scenarios of concern may include:
---------------------------------------------------------------------------
\3\ Please see https://www.selectagents.gov to access the most
recent Select Agents and Toxins lists.
\4\ Visit https://www.access.gpo.gov/bis/ear/ear_data.html to
access the most recent Commerce Control List and review the Export
Administration Regulations. The pathogens on the Commerce Control
List are derived from the Select Agents and Toxins lists and the
Australia Group's three pathogen control lists. As a member of the
Australia Group, the United States has made a commitment to control
exports of pathogens and their genetic elements on these lists.
---------------------------------------------------------------------------
a. If an ordered dsDNA product can be classified as a Select Agent
or Toxin based on the SAR \3\ \5\ or is identified as a ``sequence of
concern'' (defined in Section V.B.1.), additional customer verification
steps should be performed and may in some cases be required.
---------------------------------------------------------------------------
\5\ The CDC/APHIS national Select Agent registry Web site
(https://www.selectagents.gov) contains a guidance document entitled
``Applicability of the Select Agent Regulations to Issues of
Synthetic Genomics'' to assist providers in identifying
synthetically derived Select Agent materials that would fall under
the current regulations. The regulation of Select Agents and Toxins
currently includes (1) nucleic acids that can produce infectious
forms of any Select Agent viruses and (2) Recombinant nucleic acids
that encode for the functional form(s) of any of the regulated
toxins if the nucleic acids: (i) Can be expressed in vivo or in
vitro, or (ii) Are in a vector or recombinant host genome and can be
expressed in vivo or in vitro.
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b. If an ordered dsDNA product can be classified as a Select Agent
or Toxin based on the SAR, 3 5 providers must be registered
under the SAR to possess the dsDNA product. Transfer of the material
from the provider must be done in accordance with APHIS and CDC
procedures using the APHIS/CDC Form 2 to obtain authorization for and
to document the transfer. Additional information on the transfer of
Select Agents and Toxins is available at https://www.selectagents.gov.
c. Additional restrictions or licensing requirements may apply for
[[Page 62825]]
international orders if they include an item that is listed on the
CCL.\6\
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\6\ See Category 1, ECCN 1C353 of the CCL available at https://www.bis.doc.gov.
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2. If sequence screening or customer screening raises any concerns,
providers should pursue follow-up screening to verify the legitimacy of
the customer, the principal user and the end-use of the ordered
sequence. The goal of follow-up screening is to assist the provider in
determining whether to fill the order. If the provider encounters a
scenario where they would benefit from additional assistance in
assessing an order, the provider is encouraged to seek advice from the
relevant U.S. Government Departments and Agencies by contacting the
nearest FBI Field Office Weapons of Mass Destruction (WMD) Coordinator.
The WMD Coordinator can be reached by contacting the local FBI Field
Office and asking to be connected to the FBI WMD Coordinator.
V. Details: Synthetic dsDNA Screening Framework
This section provides details of the steps involved in the
recommended screening framework. These steps include customer
screening, sequence screening, and follow-up screening.
A. Customer Screening
Customer screening encompasses two overarching responsibilities of
providers: customer verification and identification of any ``red
flags.''
1. Customer Verification
(a) The U.S. Government recommends that, for every order, providers
of synthetic dsDNA gather the following information to verify a
customer's identity:
Customer's full name and contact information
Billing address and shipping address (if not the same)
Customer's institutional or corporate affiliation (if
applicable)
(b) To ensure compliance with U.S. regulations concerning exports
and sanctioned individuals and countries, the U.S. Government
recommends that, for every order, providers of synthetic dsDNA screen
customers against several lists of proscribed entities (described in
Section VI).
Lack of affiliation with an institution or firm does not
automatically indicate that a customer's order should be denied. In
such cases, the U.S. Government recommends conducting follow-up
screening.
Additionally, the U.S. Government recognizes that many providers
have instituted measures and procedures to properly vet customers. The
ongoing development of best practices in customer screening is
commendable and encouraged, particularly as methodologies and resources
become available to further assist with customer screening.
The U.S. Government recommends that companies retain records of
customer orders for at least eight years based on the statute of
limitations set forth by U.S. Code of Federal Crimes and Procedures,
Title 18 Section 3286.\7\
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\7\ The eight-year statute of limitations in Section 3286
applies to the offense defined by Title 18 Section 175(b)
(possession of biological agents with no reasonable justification).
---------------------------------------------------------------------------
The U.S. Government recommends archiving the following information:
customer information (point-of-contact name, organization, address, and
phone number), order sequence information (nucleotide sequences
ordered, vector used), and order information (date placed and shipped,
shipping address, and receiver name).
2. ``Red Flags''
In reviewing the customer's order information, providers should
take into account any circumstances in the proposed transaction that
may indicate that the order may be intended for an inappropriate end-
use, customer, or destination. These are known as ``red flags.''
The following is an illustrative list of indicators that can help
in identifying suspicious orders of synthetic dsDNA:
A customer whose identity is not clear, who appears
evasive about their identity or affiliations, or whose information
cannot be confirmed or verified (e.g., addresses do not match, not a
legitimate company, no Web site, cannot be located in trade
directories, etc.).
A customer who would not be expected in the course of
their normal business to place such an order (e.g., no connection to
life science research, biotechnology or requirement for DNA synthesis
services).
A customer that requests unusual labeling or shipping
procedures (e.g., requests to misidentify the goods on the packaging,
requests to deliver to a private address, or requests to change the
customer's name after the order is placed, but before it is shipped).
A customer proposing an unusual method of payment (e.g.,
arranging payment in cash, personal credit card or through a non-bank
third party) or offering to pay unusually favorable payment terms, such
as a willingness to pay a higher than expected price.
A customer that requests unusual confidentiality
conditions regarding the order, particularly with respect to the final
destination or the destruction of transaction records.
If a review of customer information reveals one or more ``red
flags,'' the U.S. Government recommends that providers conduct follow-
up screening. If providers are unsure about whether to fill an order,
they should contact the U.S. Government for further information
(described in Section VII).
B. Sequence Screening
Sequence screening, which identifies whether a requested sequence
is a ``sequence of concern,'' is intended to serve as a trigger for
further follow-up screening and does not by itself provide a basis for
determining whether an order poses a risk. Providers should screen all
orders of dsDNA.
1. Identifying ``Sequences of Concern''
The U.S. Government recommends that dsDNA orders be screened for
sequences derived from or encoding Select Agents and Toxins and, for
foreign orders, for dsDNA derived from or encoding CCL-listed agents,
toxins, or genetic elements. The U.S. Government chose the pathogens
and toxins identified by HHS and USDA as ``Select Agents and Toxins''
as an appropriate list of ``agents of concern'' against which providers
should screen orders since:
The list is comprised of high consequence pathogens and
toxins that have the potential to pose a severe threat to human,
animal, or plant health or to animal or plant products
Their possession, use, and transfer are managed through
Federal regulations.
The Select Agents and Toxins lists are reviewed biennially and
updated as needed to address biosecurity concerns.\8\
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\8\ A list of biological agents and toxins that affect humans
has been promulgated by HHS/CDC (HHS Select Agents and Toxins, 42
CFR 73.3). A list of biological agents that affect animals and
animal products has been promulgated by USDA/APHIS/Veterinary
Services (USDA Select Agents and Toxins, 9 CFR 121.3). A list of
agents that affect plants and plant products has been promulgated by
USDA/APHIS/Plant Protection and Quarantine (USDA Select Agents and
Toxins, 7 CFR 331.3). Additionally, HHS and USDA promulgated a list
of ``overlap'' agents that affect both humans and animals (42 CFR
73.4 and 9 CFR 121.4).
---------------------------------------------------------------------------
The U.S. Government reminds providers to screen for items on the
CCL for international orders to ensure they are in compliance with the
EAR. As a member of the Australia Group, the United States requires
exporters through
[[Page 62826]]
the EAR to obtain export licenses for exports of reading-frame length
nucleic acid sequences from pathogens listed under Export Control
Classification Numbers (ECCNs) 1C351, 1C352, 1C353, and 1C354.\9\ The
EAR also requires exporters to obtain licenses for exports of reading-
frame length nucleic acid sequences from pathogens on the Select Agent
list not listed elsewhere on the CCL (ECCN 1C360). The EAR requirements
specifically apply to genetic elements that encode toxins or sub-units
of controlled toxins or genetic elements associated with pathogenicity
of controlled microorganisms.
---------------------------------------------------------------------------
\9\ Definitions of terms pertinent to exports can be found in
Part 772 of the EAR. Part 734 (15 CFR chapter VII, subchapter C)
describes the scope of the EAR and explains certain key terms and
principles used in the EAR. The EAR provisions are subject to
change, as they are regularly updated pursuant to multilateral
agreements.
---------------------------------------------------------------------------
Therefore, for the purposes of this Guidance, Select Agents and
Toxins are classified as ``agents of concern,'' and ``sequences of
concern'' are dsDNA sequences derived from or encoding Select Agents
and Toxins. For international orders, ``agents of concern'' also
include items on the EAR's CCL, and ``sequences of concern'' include
those dsDNA sequences derived from or encoding those items. The U.S.
Government may revisit these definitions in the future in light of
experience with implementation of the Guidance and scientific and
technological developments.
Because the CCL and the Select Agents and Toxins lists are not
identical, it is recommended that providers ensure that international
orders are screened to identify sequences derived from or encoding
items on the Select Agents and Toxins lists and the CCL.
If a customer orders a synthetic dsDNA product that meets the
definition of a Select Agent or Toxin,\3\ \5\ domestic providers and
customers must be in compliance with the CDC and APHIS Select Agent
Regulations (42 CFR part 73, 7 CFR part 331, and 9 CFR part 121) in
order to fill the order. A provider of such regulated dsDNA must be
registered with CDC or APHIS in order to synthesize these materials. In
addition, the provider must obtain an approved transfer form from CDC
or APHIS and, for interstate transfers, a permit from APHIS (when
applicable) in order to ship such products. International providers are
advised that the receiving party must obtain an import permit from CDC
and/or APHIS and an approved transfer form in order to receive such
products. All providers are advised that receivers must hold a permit
in order to receive through importation or interstate transport any
product that meets the definition of ``plant pest'' (as defined at 7
CFR part 330), or any organism or its derivative which may introduce or
disseminate any contagious or infectious disease of animals (9 CFR part
122).
The U.S. Government recognizes that there are concerns that
synthetic dsDNA sequences not unique to Select Agents or Toxins or CCL
items may also pose a biosecurity concern. The U.S. Government also
recognizes that many providers have already instituted measures to
address these concerns. The ongoing development of best practices in
this area is commendable and encouraged, particularly in light of the
continued advances in DNA sequencing and synthesis technologies and the
accelerated rate of sequence submissions to public databases such as
the National Institutes of Health's GenBank. However, due to the
complexity of determining pathogenicity and because research in this
area is ongoing and many such agents are not currently encompassed by
regulations in the U.S., generating a comprehensive list of such agents
to screen against is not currently feasible and hence is not provided
in this Guidance.
2. Technical Goals and Recommendations for Sequence Screening
The U.S. Government developed the following list of specific
technical goals and recommendations for a sequence screening
methodology to ensure the reliable and accurate detection of synthetic
dsDNA sequences derived from or encoding ``sequences or agents of
concern:''
The U.S. Government recommends that the sequence screening method
be able to identify sequences unique to Select Agents and Toxins; to
meet their obligations under existing regulations, for international
orders, screening should also be able to identify sequences unique to
CCL-listed agents, toxins, and genetic elements. Many DNA sequences
encode genes that are required to maintain normal cellular physiology,
otherwise known as ``house-keeping genes.'' These ``house-keeping
genes'' are highly conserved between pathogenic and non-pathogenic
species. Screening methodologies that recognize highly conserved
sequences such as ``house-keeping genes'' as positive ``hits'' for
``sequences of concern'' offer little biosecurity benefit and may
impede the screening efforts. Such methodologies would produce a larger
number of ``hits'' adding extra burden for screeners and potentially
resulting in actual ``sequences of concern'' being overlooked.
Additionally, such a system may hamper scientific research by falsely
assigning sequences from closely related microbes as ``sequences of
concern.''
The U.S. Government recommends that sequence screening be performed
for both DNA strands and the resultant polypeptides derived from
translations using the three alternative reading frames on each DNA
strand (or six-frame translation). Each amino acid is encoded by a
codon, a three nucleotide sequence of DNA. The correspondence from
codon to amino acid is not unique. A given amino acid may be encoded by
one to six distinct codons, which means that an amino acid polypeptide
can be encoded by many different DNA sequences. Consequently, to
determine whether a nucleotide sequence is derived from or encodes a
``sequence or agent of concern,'' it is necessary to screen the six-
frame translation polypeptides encoded by the DNA sequences in addition
to the DNA sequences themselves.
The U.S. Government recommends that sequence alignment methods
should enable the detection of any ``sequences of concern'' in a dsDNA
order. The screening routine should be capable of local sequence
alignments. A sequence screening system that assesses only the overall
sequence length without any local checks may not detect a ``sequence of
concern'' embedded within a larger, benign sequence. In order to ensure
that ``sequences of concern'' embedded within larger sequences are not
overlooked, when screening orders longer than 200 base pairs (bps),
providers should use screening techniques able to detect ``sequences of
concern'' as short as 200 bps in length. One method that providers may
consider using involves comparing overlapping 200 bp nucleotide
segments (nucleotides 1-200, 2-201, etc.) and corresponding 66 amino
acid sequences, over the length of the dsDNA order, to a public
sequence database such as GenBank using a sequence alignment tool.
3. Sequence Screening Methodology
The U.S. Government recommends a ``Best Match'' approach for
sequence screening to determine whether a query sequence is derived
from or encodes a Select Agent or Toxin or, for international orders, a
sequence from a CCL-listed item. In this approach, the query sequence
is aligned with a database of known sequences (such as GenBank) to
identify the sequence with the greatest percent identity (the ``Best
[[Page 62827]]
Match'') over each 200 bp nucleic acid segment and corresponding amino
acid sequence (or over the entire query sequence for those dsDNA orders
shorter than 200 bps). Advantages of the ``Best Match'' approach
include: It is automatically adaptable as new sequences are added to
GenBank, it is adaptable to entirely synthetic genes, it can be
accomplished using publicly available databases and tools, and it does
not require provider discretion in setting similarity cut-off criteria.
In this approach, a query sequence is deemed to be a ``hit,'' and
the order should be investigated further by the provider in follow-up
screening, if the nucleotide sequence, over any span of 200 or more
nucleotides (or fewer than 200 nucleotides if the query sequence is
shorter than 200 bps), or if any of the six derivable 66 amino acid
open reading frame (ORF) translations, is more closely related to the
sequence of a Select Agent or Toxin (or CCL item, when applicable) than
to any other sequence in GenBank. Due to the high sequence similarity
of some Select Agents and Toxins with some attenuated strains of Select
Agents and Toxins that have been excluded from regulation,\10\
sequences that are ``Best Matches'' to these excluded strains should
still be considered a ``hit'' and the order should be subject to
follow-up screening.
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\10\ Information about attenuated strains that are not subject
to the requirements of 42 CFR part 73, 9 CFR part 121, and 7 CFR
part 331 can be accessed at https://www.selectagents.gov/Exclusions.html.
---------------------------------------------------------------------------
The ``Best Match'' approach is intended to minimize the number of
sequence hits due to genes that are shared among both Select Agents or
Toxins and non-Select Agents or Toxins (or for genes shared among CCL
and non-CCL items, when applicable). Nonetheless, some harmless
sequences in Select Agents or Toxins (or CCL items) or those that are
routinely used in scientific research may result in a ``hit'' during
this sequence screen. The U.S. Government recommends that providers
develop, maintain, and document protocols to determine if a sequence
``hit'' qualifies as a true ``sequence of concern;'' protocols that are
no longer current should be maintained for at least eight years.
Additionally, providers should keep screening records of all ``hits''
for at least eight years, even if the order was deemed acceptable. In
cases where the provider is unable to make the determination, advice
can be sought from the relevant U.S. Government Departments and
Agencies by contacting the nearest FBI Field Office Weapons of Mass
Destruction Coordinator.
As noted in Section V.B.1 above, the U.S. Government recognizes
that there are concerns that synthetic dsDNA sequences not unique to
Select Agents or Toxins or CCL items may also pose a biosecurity
concern. The U.S. Government also recognizes that many providers have
already instituted measures to address these concerns. The ongoing
development of best practices in this area is commendable and
encouraged, particularly in light of the continued advances in DNA
sequencing and synthesis technologies and the accelerated rate of
sequence submissions to public databases such as GenBank.
To this end, providers may also choose to use other screening
approaches that they assess to be equivalent or superior to the ``Best
Match'' approach or that supplement it, including customized database
approaches or approaches that evaluate the biological risk associated
with non-Select Agent and Toxin sequences or, for international orders,
sequences not associated with items on the CCL. These sequence
screening recommendations do not preclude the use of curated databases
of non-Select Agent or Toxin or non-CCL sequences for sequence
screening. The U.S. Government encourages the development of such
databases as an additional screening tool that will improve with time
as additional data become available. Whatever sequence screening
approach a provider adopts, the approach should meet the technical
requirements outlined in Section V.B.2; additionally, the provider may
choose to develop additional criteria to address non-Select Agent and
Toxin or non-CCL sequences. If the provider determines that an ordered
product poses a biosecurity risk, the provider should conduct follow-up
screening accordingly. The U.S. Government recommends that providers
develop, maintain, and document their sequence screening protocols
within company records; protocols that are no longer current should be
maintained for at least eight years.
The U.S. Government recognizes that continued research and
development may lead to new and improved screening methodologies. As
new methods are developed, U.S. Guidance may change accordingly.
C. Follow-Up Screening
The purpose of follow-up screening is to verify the legitimacy of
the customer and the principal user, to confirm that the customer and
principal user placing an order are acting within their authority, and
to verify the legitimacy of the end-use.
Follow-up screening should be conducted if customer screening or
sequence screening raises any concerns. In any case where there are
abnormal circumstances surrounding the order or the customer has
ordered a ``sequence of concern,'' the U.S. Government recommends that
providers ask for information about the customer and principal user,
including the proposed end-use of the order, to help assess the
legitimacy of their order.\11\ Sample end-uses of ordered synthetic
dsDNA could include, but are not limited to:
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\11\ As statutory precedent for requesting information about
proposed end-use, providers and customers should be aware of U.S.
Code Title 18 Section 175(b), which states in part that ``Whosoever
knowingly possesses any biological agent, toxin, or delivery system
of a type or in a quantity that, under the circumstances, is not
reasonably justified by a prophylactic, protective, bona fide
research, or other peaceful purpose, shall be fined under this
title, imprisoned not more than 10 years, or both.''
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Identification of pathogenicity genes via marker-deletion
mutagenesis.
Training for threat agent detection.
Production of organism for experimental research studies.
If not conducted previously, providers should gather the following
information to verify a principal user's identity:
Principal user's full name and contact information.
Billing address and shipping address (if not the same).
Principal user's institutional or corporate affiliation
(if applicable)
If the customer or principal user is affiliated with an institution
or firm, providers should contact the relevant biological safety
officer, supervisor, lab director, director of research, or other
relevant institutional representative in order to confirm the order,
verify the customer's and principal user's identity, and verify the
legitimacy of the order. If the customer or principal user is not
affiliated with an institution or firm, providers should also conduct a
literature review of the customer's or principal user's past research
to verify his or her identity and the legitimacy of the order. If a
literature review results in no publications, providers should request
the unaffiliated customer or principal user provide references that can
verify their identity and the legitimacy of the order. Additionally,
the U.S. Government recommends that providers screen principal users
against several lists of proscribed entities (described in Section VI),
if this
[[Page 62828]]
step wasn't already performed as part of customer screening.
Providers may consider other steps that could be implemented as
part of follow-up screening. For example, when the customer is an
institution or firm, providers may consider the following steps: Check
the customer's contact information against standard industry and
institutional directories and listings; where the customer is known by
reputation, check that the contact information matches its Web page;
and/or confirm customer identity though government contacts. When the
customer or principal user is affiliated with an institution or firm,
providers may consider the following steps: Check whether the
institution's or firm's usual paperwork has been used to place the
order; check that shipments will be delivered to the institution's or
firm's usual address; check that the customer's and principal user's
supervisors have been copied on the order or can confirm the order;
check that the order has been certified by the institution or firm;
and/or check that the end-use has been reviewed and approved by the
institutional biosafety committee or another relevant institutional
committee.
It is important to note that a provider's decision to pursue
follow-up screening does not necessarily imply that the U.S. Government
will be contacted. However, in cases where follow-up screening cannot
resolve concerns raised by customer screening or sequence screening, or
when providers are otherwise unsure about whether to fill an order, the
U.S. Government recommends that providers contact relevant agencies as
described in Section VII. Providers should retain records of any
follow-up screening, even if the order was ultimately filled, for at
least eight years.
VI. Recommended Processes for Domestic and International Orders
This section outlines recommendations for specific screening
processes for orders from domestic and international customers. The
customer screening, sequence screening, and follow-up screening
protocols that are referenced in this section are defined and described
in Section V. Most of the information provided in this section serves
as a reminder to providers to ensure they are meeting their legal
obligations not to conduct unapproved business transactions with
certain proscribed entities.
A. Domestic Orders
Once a domestic customer order is received, the provider should
conduct both customer screening and sequence screening, in no
particular order.
1. Customer Screening
In addition to verifying the customer identity and identifying any
``red flags,'' providers should be aware of regulatory and statutory
prohibitions for U.S. persons from dealing with certain foreign
persons, entities and companies. In order to avoid violating U.S. law,
providers are encouraged to check the customer against several lists of
proscribed entities before filling each order, including the:
Department of Treasury Office of Foreign Assets Control
(OFAC) list of Specially Designated Nationals and Blocked Persons (SDN
List).
Department of State list of persons engaged in
proliferation activities.
Department of Commerce Denied Persons List (DPL).
According to U.S. regulations, no U.S. persons or entities may
conduct business transactions with individuals or entities on the SDN
List without a license from OFAC. This list is maintained by OFAC. OFAC
only provides a license to deal with individuals on the SDN List in
extremely limited circumstances.\12\
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\12\ Additional information, including the SDN List, is
available at: https://www.treas.gov/offices/enforcement/ofac/sdn/.
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According to U.S. regulations, no U.S. persons or entities may
conduct business transactions with individuals sanctioned by the
Department of State for engaging in proliferation activities.\13\
---------------------------------------------------------------------------
\13\ Announcements of such sanctions determinations are printed
in the Federal Register and are maintained on the Department of
State's Web site (https://www.state.gov/t/isn/c15231.htm).
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Additionally, the U.S. Government recommends that providers screen
customers against the DPL for domestic orders. This list includes those
firms and individuals whose export privileges have been denied. While
the Department of Commerce only regulates exports and therefore does
not require that companies screen their domestic customers against the
list, it recommends that they do so, to avoid unwittingly passing on
sensitive technology or materials to U.S. residents known to be
involved in proliferation activities.\4\
Because the updated lists are available online, providers should
ensure they are using the most recently updated lists when screening
customers or principal users against these lists.
If there are concerns after consulting these lists, providers
should seek assistance from the U.S. Government as outlined in Section
VII.
2. Sequence Screening
Providers should also conduct sequence screening. If a ``sequence
of concern'' is identified, providers should conduct follow-up
screening.
B. International Orders
Once an order from an international customer is received, the
provider should conduct customer screening and sequence screening, in
no particular order. Providers are reminded that genetic elements of
the Select Agents and Toxins, microorganisms and toxins (proteins) are
controlled for export. Exporters should make sure they are in
compliance with the EAR when exporting genetic elements from CCL-listed
items.\4\
1. Customer Screening
In addition to verifying the customer identity, identifying any
``red flags,' and complying with the rules described for domestic
orders, all providers who export products from the United States to
international customers must comply with the U.S. export laws,
including the International Emergency Economic Powers Act,\14\ the
Trading with the Enemy Act,\15\ and any implementing U.S. Government
regulations or Presidential Executive orders. Certain transactions with
sanctioned countries may be permitted but may require a license from
OFAC and/or the Department of Commerce's Bureau of Industry and
Security (BIS). Currently, most transactions involving Cuba, Iran, and
Sudan are prohibited. In order to comply with the U