First-Generation Guidelines for NCI-Supported Biorepositories, 25184-25203 [06-3997]
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BILLING CODE 4140–01–M
DEPARTMENT OF HEALTH AND
HUMAN SERVICES
National Institutes of Health
First-Generation Guidelines for NCISupported Biorepositories
National Institutes of Health
(NIH), National Cancer Institute (NCI).
ACTION: Notice.
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AGENCY:
SUMMARY: The NCI is establishing
common guidelines for the collection of
biospecimens and their accompanying
data by NCI-sponsored biorepositories.
These guidelines are intended to
standardize and enhance the quality of
research material and data used in
cancer research.
DATES: Effective Date: May 30, 2006.
ADDRESSES: These guidelines are open
for public comment for a period of 30
days. After the comment period has
closed, any comments received will be
considered in a timely manner by the
NCI Office of Biorepositories and
Biospecimen Research and appropriate
changes will be made and the final
guidelines will be published and
voluntarily in effect. After the effective
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date of publication of the final
guidelines, written comments will
continue to be accepted for the first year
of implementation and can be sent to:
First-Generation Guidelines, Office of
Biorepositories and Biospecimen
Research, Office of the Deputy Director
for Advanced Technologies and
Strategic Partnerships, National Cancer
Institute, National Institutes of Health,
31 Center Drive, Room 10A03, Bethesda,
MD 20892. Comments submitted via
e-mail should use
biospecimens@mail.nih.gov and enter
‘‘First-Generation Guidelines Comment’’
in the subject line. During the first year
of implementation, the NCI will review
any additional comments and
experience with the guidelines to
evaluate a possible need for future
guidelines modification.
FOR FURTHER INFORMATION CONTACT:
Implementation assistance and inquiries
should be directed to senior staff of the
relevant NCI Extramural and Intramural
Program offices.
SUPPLEMENTARY INFORMATION:
I. Introduction
The guidelines assembled in this
document are intended as a first step
toward unifying policies and procedures
for NCI-supported biorepositories. This
process was initiated by the NCI
through a multiyear process that began
in 2002, including a 2004 report
compiled for the National Cancer
Advisory Board that showed substantial
heterogeneity in biorepository
management practices across the
Institute (NCAB 2004). This study
showed that NCI-supported
biorepositories are not optimized in
terms of operational, legal, and ethical
policies and procedures, nor are they
coordinated to provide a unique
resource value. Specifically, it showed
that:
• The NCI invests more than $50
million annually in biorepository
programs, not including biorepositories
supported through individual
investigator grants, such as R01s.
• The 125 programs included in the
study collected, maintained, and/or
stored approximately 4 million human
biospecimens in FY 2003.
• These programs support basic,
epidemiologic, translational, and
clinical research.
• Most programs collect frozen
biospecimens and support genomic and
proteomic research.
• Across the broad range of programs,
there are no common standard operating
procedures (SOPs) or Quality
Assurance/Quality Control (QA/QC)
measures.
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• The programs lack a common
database.
• There is no consistent, defined
mechanism to access NCI-supported
biospecimen resources.
II. Background
In 2005 the NCI took several actions
to respond to these findings, including
establishment of the Biorepository
Coordinating Committee (BCC) in early
2005. The BCC is advisory to the NCI’s
Office of Biorepositories and
Biospecimen Research (OBBR). The
primary purpose of the BCC is to work
with the OBBR to coordinate the NCI’s
biorepositories in a manner that
optimizes the quality and accessibility
of biospecimens for the broad cancer
research community. Toward this goal,
the OBBR and the BCC organized two
workshops during the summer of 2005
to inform the development of specific
recommendations on policy and
operational issues. These workshops,
which were based on the development
of a series of white papers that
consolidated documents and the overall
knowledge base in biospecimens,
brought together diverse representatives
from the cancer research community as
well as ethics, policy, and legal experts
to discuss and propose approaches that
could help unify, integrate, and improve
the transparency of NCI-supported
biorepository activities. The report and
recommendations that resulted from the
workshops are summarized in the
document Harmonizing Processes and
Policies for NCI-Supported
Biorepositories, which was presented to
the National Cancer Advisory Board in
September, 2005. The report can be
found at https://
biospecimens.cancer.gov/
biorepositories/bcc_summary.asp.
NCI defines a biorepository as a place,
room, or container where human
biospecimens are stored. Biorepositories
may vary considerably, ranging from
formal organizations to informal
collections of materials in an individual
researcher’s freezer.
Currently biorepositories serve as
critical resources to the research
community in the performance of
postgenomics cancer research. It is
becoming increasingly important that all
biorepositories strive to achieve the best
possible biospecimen quality, which
would necessarily call for the adoption
of consistent documentation, collection,
processing, storage, and retrieval
guidelines such as those outlined in this
document. The workshops’
recommended approaches were
reported to the NCAB in September
2005. Proposed approaches, as well as
additional meetings and work over the
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past 3 years, form the basis of the firstgeneration NCI biorepository guidelines.
These guidelines will be distributed to
managers of all NCI-supported
intramural and extramural
biorepositories, who will be initially
asked to conform to them on a voluntary
basis. It is important to note that
developing a workable set of guidelines
is an evolving process that, with the
emergence of new technologies and
clinical practices, will require periodic
revision. Therefore, these guidelines
will be revised iteratively, with input
from researchers, biorepository
managers, advocates, policymakers, and
related stakeholders.
III. Guidelines
Overview
1. Technical and Operational
Guidelines
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A. Biospecimen Collection, Processing,
Storage, Retrieval, and Dissemination
1. Collect and process biospecimens
under conditions appropriate for each
biospecimen type and for the intended
analyses, using collection protocols that
are based on authoritative best practices
or solid research data, when available.
Ensure that proper informed consent
protocols are followed.
2. Base all protocols on SOPs that are
established using authoritative best
practices or solid research data, when
available.
3. Maintain a thorough and consistent
level of biospecimen annotation while
maintaining donor patient privacy
pursuant to informed consent
provisions.
4. Use a computerized inventory
system that tracks the specific position
of every stored aliquot. Each storage
container should be labeled with a
unique identifier. All other relevant
information should be tied to this
unique identifier. Inventory systems
should contain security provisions
sufficient to safeguard privacy and other
informed consent provisions.
5. Develop a comprehensive quality
management system (QMS).
Standardized protocols should be
applied consistently to ensure
biospecimen quality and to avoid
introducing variables into research
studies. Document all collection and
processing steps in the computerized
inventory tracking system.
6. Ensure that all laboratory personnel
are well qualified, trained to adhere to
biorepository SOPs, and monitored for
high-quality performance.
7. Ensure that a pathologist directs the
collecting and processing of surgical
and autopsy biospecimens to ensure
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that clinically important issues related
to the biospecimens are adequately and
accurately addressed and that patient
care is not compromised.
8. Store biospecimens in a stabilized
state. In selecting the biospecimen
storage temperature, consider the
biospecimen type, the anticipated
length of storage, the biomolecules of
interest, and whether goals include
preserving viable cells. Use stabilizing
agents as appropriate. Storage vessels
should be durable under planned
storage conditions. Follow consistent
freezing and thawing protocols to
ensure consistent quality for assays.
9. Establish rules for biospecimen
disposal before storing the biospecimens
in the biorepository and monitor
compliance with the rules. Consider the
anticipated storage interval when
selecting storage conditions.
10. For tissue biospecimens, minimize
the time for collection and processing as
much as possible (unless inadequate
processing time is known to interfere
with the analysis method); reduce
biospecimen temperature as soon as
possible after collection. Optimal
processing times may vary for other
types of biospecimens depending on the
analysis method for which they are
used.
11. Establish inventory tracking
systems and storage organizational
methods to minimize disruption of the
stable environment during sample
retrieval.
12. Regularly review the performance
of all long-term storage systems and
equipment using standardized
protocols.
13. Choose biospecimen containers
with analytical goals in mind. This may
require, for example, screening of
containers for trace metals that may
interfere with laboratory analyses.
14. Adhere to biosafety, packaging,
and shipping regulations. Use a tracking
system for biospecimen shipments. The
biorepository should notify a recipient
before shipping to confirm that the
recipient can accept the package and
properly store the biospecimen.
15. Retrieve biospecimens from
storage according to SOPs that safeguard
biospecimen quality.
16. When it is necessary to control
biospecimen temperature during
shipping, consider the shipping time,
distance, climate, season, and method of
transportation and modify distribution
schedules accordingly, if possible.
Ensure proper temperature during
shipment, taking into account the type
of biospecimen and its intended use.
Tracking devices may be useful to
ensure proper temperature throughout
the shipment duration.
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17. Prior to shipment, execute
appropriate Material Transfer
Agreements (MTAs) addressing donor
privacy, as appropriate, intellectual
property (IP), data sharing, and other
similar requirements.
18. Consult International Society for
Biological and Environmental
Repositories (ISBER) best practices
(ISBER 2005) for guidance on
international transport regulations
(governed by the International Air
Transport Association) and information
on classifying biospecimens for
shipment. Train personnel in the
shipment of biospecimens and update
their training every 2 years. Maintain
training records for all employees
involved in shipping.
B. Collecting and Managing Clinical
Data
1. Strive to collect and store all
relevant clinical or epidemiologic data
associated with a biospecimen,
including, as study requirements
dictate, longitudinal data. Follow
applicable informed consent
requirements and institute appropriate
security/data-access control measures to
address privacy issues. The NCI will
work with biorepositories to establish a
minimal ‘‘universal’’ clinical data set.
2. Use an informatics system that
tracks all aspects of biospecimen
collection, processing, and distribution
to prevent biospecimen identification
discrepancies and to support
annotation.
3. Comply with applicable privacy
and human subjects protection
regulations governing the acquisition of
biospecimens and associated clinical
data. Link biospecimens to clinical data
in compliance, as applicable, with the
Health Insurance Portability and
Accountability Act of 1996 (HIPAA) and
U.S. Department of Health and Human
Services (HHS) and U.S. Food and Drug
Administration (FDA) human subjects
protection regulations.
C. Quality Assurance/Quality Control
(QA/QC)
1. Adhere to a written QMS. The QMS
should describe the biorepository’s QA/
QC programs and approaches for
ensuring that program requirements are
met.
2. Require that staff be trained in QA/
QC and maintain training records.
3. The SOPs should be printed in a
manual that is readily available to all
laboratory personnel and dated
according to the most recent revision.
The SOPs should state policies and
define and describe procedures in
detail. Develop procedures for
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periodically reviewing and revising
SOPs as necessary.
4. Establish security systems,
including equipment monitoring and
alarm systems that are monitored both
locally and remotely, with plans to
respond at any time. Emergency power
systems should be ready to operate all
critical equipment during power
outages.
5. Use a data management system that
includes a computerized inventory
tracking system with appropriate
security/access-control safeguards.
6. Develop a facility disaster plan
based on a local area risk assessment.
The plan should include appropriate
measures to protect personnel and
equipment during a disaster.
7. Maintain and repair all equipment
according to SOPs. Establish preventive
maintenance schedules.
D. Biosafety
1. Assume that all human
biospecimens are potentially infective
and biohazardous. Use universal
precautions practices in biorepositories
similar to those used in other
laboratories and clinical settings.
Handle biospecimens according to, at a
minimum, Biosafety Level 2 (BSL–2) as
outlined in the CDC/NIH booklet
Biosafety in Microbiological and
Biomedical Laboratories.
2. Immunize employees (e.g., for
hepatitis) when appropriate vaccines are
available.
3. Develop a safety program and
associated training procedures by
identifying governmental and
accrediting agency requirements
regarding biohazards and likely sources
of current information concerning
laboratory biosafety. Among the
agencies that oversee laboratory
biosafety programs are the Occupational
Safety and Health Administration
(OSHA), the CDC, and the Clinical and
Laboratory Standards Institute (CLSI).
4. Identify and address risks and other
general issues of biosafety. Identify
frequent biorepository activities and
analyze safety issues involved with each
activity. Take appropriate actions to
ameliorate hazards.
5. Document all incidents where
personnel are exposed. Response and
treatment protocols should be prepared
to be available in the event of potential
exposure and infection.
6. Establish indemnification
agreements with users of biospecimens
except where prohibited by law.
7. Follow U.S. regulations concerning
chemical safety, which protect
employees from exposure to
biohazardous levels of chemicals.
Biorepositories should also develop a
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chemical hygiene plan in compliance
with the OSHA’s laboratory standards.
8. Properly ground freezers and other
electrical equipment.
9. Establish fire emergency plans and
practice them regularly.
10. Take precautions to prevent
repetitive strain and back injuries and
other accidents and injuries typical of
the laboratory/biorepository
environment.
11. For any laboratory or
biorepository that processes radioactive
materials, ensure that proper training of
personnel and acquisition of necessary
equipment to obtain licenses from the
Nuclear Regulatory Commission (NRC)
and/or local agencies are carried out.
E. Biorepository Informatics: Data
Management and Inventory Control and
Tracking
1. Assign a unique identifier (such as
a number or barcode) to each
biospecimen at the time of collection.
Identify specific clinical and
epidemiological data by the same
number and/or barcode. Use the number
or code to track a biospecimen from
collection through processing, storage,
and distribution.
2. Update the biorepository database
each time a biospecimen is moved
within or out of the biorepository.
3. Use informatics systems that
support the linking of biospecimens
with associated research data and, when
available, the limits, if any, on the use
of the sample. When applicable, track
the levels of consent that each patient
has given for the use of their
biospecimens and whether that consent
has been withdrawn.
4. To protect the health information of
patients, adhere to privacy laws with
respect to informatics systems.
5. The NCI Center for Bioinformatics
(NCICB) has developed additional
bioinformatics guidelines and tools that
address the issues of functionality of
informatics systems, integration with
existing systems, and interoperability
among individual systems at
biorepositories. The NCICB has
developed the Cancer Biomedical
Informatics Grid, or caBIG TM. caBIG
(see https://cabig.nci.nih.gov/) (NCI
2005) is a voluntary network or grid
connecting individuals and institutions
to enable the sharing of data and tools.
caBIG silver-level compatibility is
recommended for NCI-supported
biorepositories (see https://
cabig.nci.nih.gov/
guidelines_documentation).
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2. Ethical, Legal, and Policy Guidelines
A. Informed Consent
1. Use a process of informed consent
for each biospecimen collection event.
The NCI will provide all of its
biorepositories with a sample consent
template, which should be reviewed
and adapted by the relevant IRB.
Biorepositories should adapt the
template to their needs. The consent
form should address the use of
biospecimens or data by private entities,
the possible future development of
commercial products through research,
and the release of individual research
results to participants.
2. Allow research participants to
specify the types of research for which
their biospecimens may be used,
including use in additional future
projects.
3. Document clear policies for
biospecimen and data access.
4. Develop policies to handle
biospecimens and data for which
consent has been withdrawn.
5. Monitor the need for obtaining
informed consent when the
biorepository houses identifiable
biospecimens and data from children,
that were obtained with parental or
guardian permission, when a child
reaches the legal age to consent for a
research study.
6. Consider FDA regulations
concerning research on existing
biospecimen collections, for any study
that could involve FDA oversight in the
future. These regulations do not exempt
in vitro studies from the requirement for
documented, institutional review board
(IRB)-approved consent from the
sources, even in cases where
biospecimens have been deidentified.
7. Establish and document transparent
policies governing the retention of
records and biospecimens. For clinical
biospecimens, State laws may also
govern how long records must be
retained. For research specimens, the
ideal is permanent storage if resources
and storage space are sufficient.
However it should be noted that
biospecimens degrade over time and/or
may no longer be useful due to changes
in science and technology.
For additional information about IRBs
and the requirement for the HHS Office
for Human Research Protections
(OHRP)-approved assurance of
compliance, see the OHRP Web site at
https://www.hhs.gov/ohrp/. Specific
OHRP guidance concerning tissues and
biorepositories is included among the
documents referenced at https://
www.hhs.gov/ohrp/policy/
index.html#tissue.
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B. Access to Biospecimens and Data
1. Establish clear guidelines for
sample distribution (and clinical data
sharing) consistent with ethical
principles, prevailing laws, and, if
applicable, consent form language. The
guidelines should be flexible so that
biorepositories may respond to changing
scientific needs.
2. Ensure that investigators have
timely, equitable, and appropriate
access to human biospecimens and
associated clinical data stored at NCIsupported biorepositories without
undue administrative burden. Access
should be guided by policies and
procedures such as the following:
• Scientific validity of the research
proposal.
• Investigator’s agreement covering
confidentiality, use, disposition, and
security of biospecimens and associated
data.
• Investigator’s written agreement in
a Material Transfer Agreement to
comply with the NIH Research Tool
Guidelines. (https://ott.od.nih.gov/
policy/rt_guide_final.html).
• Investigator and institutional
research qualifications.
• Ethical oversight where required by
Federal regulations or local institutional
requirements.
• Adequate funding for the
biorepository.
In addition to the above, the following
points should also be considered while
assessing access privileges:
a. Biospecimens and associated
clinical data should be appropriately
matched with the specific scientific
investigations for which they are
intended.
b. The local decision-making body
should take local principles into
account. Ethical considerations should
come first among principles that guide
the decisionmaking process.
c. Biorepositories should establish an
appeals process for addressing disputes
over allocation decisions.
3. Apply guidelines to all new
collections and, whenever possible, to
existing collections.
4. If applicable and where monetary
charges are necessary, charge only to
recover costs as appropriate to retrieve
and disseminate specimens.
5. If a biorepository must close due to
lack of funding or otherwise cannot
maintain or use the biospecimens, the
availability of biospecimens should be
announced for transfer to the research
community (e.g., via a Web site).
Transfer should be consistent with the
informed consent and allowable use of
biospecimens.
6. Within the biorepository, use a
system of data access with defined
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levels of access privileges. Restrict
access to research subjects’ identities
and medical, genetic, social, and
personal histories to necessary
biorepository staff members who need
such access as part of their duty or to
persons permitted access by law.
Monitor personnel compliance with
access restrictions.
7. Store human biospecimens only for
research purposes according to
approved protocols, not to serve
individual research participants’ needs
or wishes.
C. Privacy Protection
1. Institute the level of security
appropriate to the type of biorepository
and to protect study participant privacy
for the biospecimens stored in the
biorepository.
2. In applications for support, include
documentation of policies, mechanisms
for auditing the effectiveness and
enforcement of policies, required
training, and security measures
pertaining to employee access to data or
biospecimens.
3. Institute the level of security
appropriate to the type of biorepository.
D. Custodianship
1. In the application for proposal for
biorepository funding, propose plans for
formal and continuing responsibility for
custodianship (not ownership) of
collected biospecimens and associated
data as part of the biorepository
protocol.
2. In the application for proposal for
biorepository funding, also address
plans for the handling and disposition
of biospecimens and associated data at
one or more of the following points: (a)
End of the active support of the grant,
(b) accomplishment of the specific
research objectives of the study, (c)
depletion of biospecimens, and/or (d)
achievement of critical data endpoints.
3. Require disclosure of financial or
professional conflicts of interests of
biorepository personnel, consistent with
institutional procedures and policies.
4. Use clear and specific informed
consent language to ensure that those
who contribute biospecimens and/or
data for research purposes are fully
informed that the research done with
these biospecimens may help develop
products, tests, or discoveries that may
have commercial value (also see A.1.
above).
E. Intellectual Property
1. For the transfer of materials in
academic-industrial collaborations, use
the NIH Simple Letter Agreement (SLA),
the Uniform Biological Material
Transfer Agreement (UBMTA), or other
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MTA with terms consistent with the
NIH Research Tools Policy and NIH data
sharing policies, e.g., the Final NIH
Statement on Sharing Research Data.
These agreements should be modified
where necessary to cover human
subjects research. A sample NIH SLA
modified to address the transfer of
human biospecimens is attached as
Appendix 2.
The following Internet sites are
relevant to this issue:
• https://ott.od.nih.gov/policy/
research_tool.html.
• https://www.autm.net/aboutTT/
aboutTT_umbta.cfm.
• https://grants1.nih.gov/grants/
policy/data_sharing/index.htm.
2. Recognize that biorepository staff
members as custodians of biospecimens
are not a priori considered inventors
under patent law for inventions made
using materials distributed by the
biorepository. In general, the staff
should be informed that one whose sole
contribution to an invention consists of
the routine collection, handling, storage,
and disbursement of biospecimens
might not rise to the level of ‘‘inventor’’
of an invention. Inventorship is
determined by patent law and must be
considered on a case-by-case basis by
trained legal personnel.
3. Recognize that biorepositories have
no inherent rights to future IP, including
reach-through rights in inventions made
by investigators using samples obtained
from the biorepository.
4. Ensure through MTAs that research
data developed using biospecimens are
made available to the research
community. (See sample in Appendix
2.)
Guidelines Details
1. Technical and Operational
Guidelines
A. Biospecimen Collection, Processing,
Storage, Retrieval, and Dissemination
Although the specific mission of a
biorepository will result in the use of
different collection and processing
procedures, common principles should
apply to all biospecimen types. The
guidelines below are based on current,
published information and will be
revised periodically as new information
is generated from ongoing research
projects.
Determining Which Biospecimens To
Collect
1. Collection priorities should be
based on the defined purpose of each
NCI-supported biorepository in
supporting specific types of research.
Biorepositories should track researchers’
requests to guide the collection and
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storage process and to attempt to
anticipate which biospecimen types
(e.g., matched blood, serum, plasma,
buffy coat, saliva, urine) will make the
biorepository most useful for future
research. Researchers should involve
biorepository scientists as early as
possible during study planning to
develop a strong approach for
biospecimen collection.
2. NCI-sponsored biorepositories
should strive to collect materials from
diverse populations representative of
the United States. However, this goal
may depend on the specific purpose,
such as the disease focus, of the NCI
studies supported by the biorepository.
Biospecimen Collection and Processing
Biospecimen collection occurs in
many contexts, including surgical
procedures, organ donation and
transplantation, autopsies,
venipuncture, and evacuation; for
population-based studies, collection
may occur in field locations such as
hospitals or study participants’ homes.
1. The NCI will provide guidance in
the future on guidelines for biospecimen
collection while allowing for flexibility
when new methodologies are warranted.
SOPs will enhance the comparability of
research results and help make
biospecimens interchangeable. This
guidance will include:
• Collection protocols for various
biospecimen types based on solid
research data.
• A high level of biospecimen
annotation, consistent across NCIsponsored biorepositories, recording key
data, such as time to banking, time of
ischemia, time of biospecimen excision,
character of chemical preservation, time
of fixation, etc. For paraffin-embedded
biospecimens, it may prove important
for the interpretation of analytic data
derived from these biospecimens to
have documentation of the specific
protocol through which a biospecimen
was processed before it was placed in
paraffin. Appropriate and complete
documentation surrounding
biospecimen collection, processing, and
storage are essential and relevant to the
quality of research data to be obtained.
• Uniform, nonredundant sample
nomenclature across NCI-sponsored
biorepositories.
• State-of-the-art sample tracking
procedures and supporting informatics.
• A QMS to ensure adherence to
standards.
2. Biorepositories should record data
relevant to research goals. As
appropriate for the study, for all types
of biospecimens, the amount of time
elapsed during collection and
processing should be recorded and
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tracked in the biorepository informatics
system. Biorepositories should also
record data on the collection and
processing procedures used.1
• For tissue biospecimens, the time
for collection should be minimized as
much as possible; biospecimen
temperature should be reduced as soon
as possible after collection. Biospecimen
processing time should be minimized if
freezing is the stabilization endpoint. If
fixation is the stabilization endpoint,
control of processing time between
maximum and minimum durations may
be required.
• Rapid processing may not be as
critical for other types of biospecimens,
such as blood, and optimal processing
times may vary depending on the
analysis method for which a
biospecimen is used. Examples of data
to record for blood biospecimens
include collection time relative to
treatment or other interventions, time of
day at collection, whether the patient
was fasting, and whether he or she was
sitting or standing during collection.
3. NCI-supported biorepositories
should seek to use the processing
method that preserves the greatest
number of analytes, unless the aim of a
particular study specifically requires
alternative processing. To select
processing methods (such as freezing,
fixation, and the use of stabilizing
additives), a biorepository should define
its goals and the research priorities of
the studies it supports. Procedures
should maximize the potential for
biospecimen distribution and research
use. When possible, individual
biospecimens should be divided into
aliquots or fractions and/or preserved by
multiple processing methods.
Biorepositories that validate
biospecimen quality for specific
research applications should use as
little of the biospecimen as possible.
Biorepository Personnel
Personnel involved in biorepository
management and use, including
researchers, technicians, nurses,
surgeons, pathologists,
anesthesiologists, and assistants, should
be aware of the purpose and goals of the
biorepository. To ensure the collection
of high-quality biospecimens for
research, collection, and processing,
personnel should be well qualified and
1 NCI will support research to determine the
effects of various biospecimen processing methods
on analyte preservation. Biorepositories should
continually attempt to improve collection and
processing methods to maximize the quality of
materials for molecular analysis. NCI-supported
biorepositories should document the effects of
different processing methods and develop
guidelines for biospecimen processing based on the
goal of preserving various analytes.
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trained to adhere to applicable SOPs. A
pathologist should be involved for
expertise in collecting and processing
surgical and autopsy biospecimens. It is
important that a pathologist determine
what tissue is necessary for pathologic
diagnosis and what is excess and can be
given to the biorepository for research
purposes. This is crucial in ensuring
that patient care is not compromised.
Biospecimen Storage
The following general guidelines
section applies to all types of
biospecimens, such as wet tissue, frozen
tissue, paraffin-embedded tissue, glass
slides, blood, serum, and urine.
Individual types of biospecimens
should be handled according to SOPs
specific to each biospecimen type and to
the biomolecules to be analyzed in that
biospecimen type (e.g., RNA, DNA,
protein, lipid, etc.).
1. Standardized protocols should be
applied consistently in preparing and
storing biospecimens to ensure their
quality and to avoid introducing
variables into research studies.
Biorepositories should record storage
conditions and especially deviations
from SOPs, including information about
temperature, thaw/refreeze episodes,
and equipment failures. Each piece of
storage equipment should have a log
containing the manufacturer’s manual,
records of equipment operation, and
descriptions of maintenance, repairs,
and calibration. Storage conditions
should be recorded automatically, and
the performance of all long-term storage
systems and equipment should be
reviewed annually using standardized
protocols (Mager et al. 2004). Calibrated
devices should be used to validate
automated temperature measurements.
2. Biospecimens should be stored in a
stabilized state. For blood
biospecimens, all components should be
stored where possible. This is
particularly important for large,
population-based studies, for which it is
difficult to predict how biospecimens
will be analyzed in the future.
A biorepository should avoid
unnecessary thawing and refreezing of
frozen biospecimens or frozen samples
of biomolecules extracted from the
biospecimens. When thawing/refreezing
is necessary, a biorepository should
follow consistent and validated
protocols to ensure continued stability
of the analytes of interest. Methods,
such as inventory tracking, should be
established to minimize disruption of
the stable environment during sample
retrieval.
In selecting biospecimen storage
temperature, consider the biospecimen
type, the anticipated length of storage,
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the biomolecules of interest, and
whether goals include preserving viable
cells. Paraffin blocks should be stored at
temperatures below 80 °F (27 °C) in an
area with pest and humidity control. In
the case of liquids, such as blood and
urine, consider separating biospecimen
components before storage to preserve
each constituent under its optimal
condition. However, whole-blood
(rather than fractional) cryopreservation
is recommended as an efficient and
cost-effective option for processing
viable cells in large-scale studies (Hayes
et al. 2002). When in doubt as to
possible future uses, store tissues in the
vapor phase of liquid nitrogen freezers
to ensure long-term viability. Lower
storage temperatures and the use of a
cryoprotectant (such as DMSO) are
recommended to maintain viable cells
for long periods of time (ISBER 2005).
Planned analyses should consider the
difference in temperature between the
bottom and top of a liquid nitrogen
freezer; the temperature at the top of a
liquid nitrogen should be consistently
below ¥140 °C.
Avoid self-defrosting freezers that
cause damaging effects to biospecimens,
even those in capped tubes, by
enhancing desiccation (Holland et al.
2003).
3. Biorepositories should establish
rules for disposing of biospecimens
before storing them. Consider the
anticipated storage interval when
selecting storage conditions. If possible
with available resources, store control
biospecimens under each condition
used in the biorepository and assess
these control biospecimens at regular
intervals to assess the effects of storage
time on desired qualities such as
viability, preservation of morphology,
and biochemical integrity.
4. Storage vessels should be stable
under planned storage conditions. Vial
size and number should be suitable for
typical aliquots, anticipated investigator
uses, and number of investigators.
Volume and type of containers should
prevent sample loss and minimize the
costs of collection and storage. Screwcap cryovials should be used for longterm, low-temperature storage; glass
vials or vials with popup tops are
unsuitable for long-term storage
(Caporaso & Vaught 2002). Wrap snapfrozen biospecimens in aluminum foil
or place them in commercial storage
containers to minimize desiccation
(Grizzle 2004). Choose labeling and
printing systems that will be stable
under the long-term storage conditions
appropriate for the biospecimen. Face
shields and appropriate gloves should
be worn for worker protection.
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Biospecimen containers should be
chosen with analytical goals in mind.
For example, when samples will be
tested for the presence of xenobiotic
chemicals, containers should be free of
xenobiotic contamination. Certified
RNase-free containers should be used
for all steps in handling RNA samples.
5. Each storage container should have
a unique identifier for the biospecimen
aliquot that is firmly affixed to the
container, clearly and legibly marked,
and able to endure storage conditions.
All other relevant information should be
tied to this unique identifier, bearing in
mind study participant confidentiality,
security, and informed consent
provisions. Inventory systems should
relate the presence of each aliquot to its
specific position in a specific freezer,
refrigerator, or shelf.
6. Automated security systems should
continuously monitor the function of
storage equipment. Backup equipment,
such as an alternative power source,
should be automatically activated when
necessary. Emergency procedures
should be in place if freezers fail or
exceed a preset temperature. SOPs
should be in place for alerting personnel
and for moving biospecimens to
alternative storage locations.
Biorepository SOPs should include
procedures for responding to severe
weather and floods as well as specific
power and equipment failures.
Personnel should be trained in safety
related to biospecimen handling, use of
equipment, and SOPs for responding to
emergency situations. For particularly
valuable biospecimens, an empty,
functioning freezer should be available
in case of single-freezer failure. Also
consider storing replicate biospecimens
in at least two different locations to
safeguard against storage or handling
failures (NBN Blueprint 2003; Landi and
Caporaso 1997; Caporaso and Vaught
2002; Eiseman et al. 2003).
Shipping Biospecimens
1. Retrieval. Biospecimens should be
retrieved from storage according to
biorepository SOPs that safeguard
biospecimen quality. Before retrieval,
systems should be in place to verify that
the request has received approval from
the appropriate committee(s). SOPs
should include a checklist to confirm
completion of the retrieval process.
Document deviations during retrieval,
such as inventory inconsistencies,
damaged containers, thawing or
refreezing, etc.
2. Shipping conditions. When seeking
to regulate biospecimen temperature
during shipping, consider the shipping
time, distance, climate, season, method
of transportation, and regulations as
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well as the type of biospecimens and
their intended use (Landi and Caporaso
1997). The number of biospecimens per
package also affects whether
temperature can be maintained for all
biospecimens in the shipment. Send a
prior test shipment, of frozen water
samples for example, before shipping
extremely valuable samples, to check
the adequacy of coolants and any
potential obstacles to a successful
shipment. In addition, conditions
throughout a critical shipment can be
monitored by enclosing a device that
records temperature during transport.
Placing samples in sealed bags with a
desiccant can be used to control
humidity.
To maintain proper temperature
during shipping, use appropriate
insulation, gel packs, dry ice, or liquid
nitrogen (dry shipper). To maintain
refrigerated temperatures (2°C to 8°C),
use gel packs conditioned at ¥15°C or
phase change material rated for
refrigerated transport. To maintain
frozen temperatures, use gel packs
conditioned at or below ¥20°C. For
frozen temperatures at ¥70°C, use dry
ice pellets or sheets. Note that dry ice
is considered a hazardous substance for
shipping purposes. For maintaining
temperatures at or below ¥150°C, use a
liquid nitrogen dry shipper (ISBER
2005). Use insulated packaging to
protect biospecimens from extremely
hot or cold ambient conditions.
Whenever intending to maintain
samples below ambient temperature,
include enough refrigerant to allow for
a 24-hour delay in transport (ISBER
2005). Temperature-sensitive material
should be handled by a courier with
resources to replenish the refrigerant in
case of a shipping delay (ISBER 2005).
Paraffin blocks and slides should be
shipped at room temperature in an
insulated package via overnight carrier.
The use of insulated packages is
important to minimize the effect of
temperature fluctuations and to protect
the blocks from temperatures higher
than 80°F (27°C). Flat biospecimens,
such as dried blood samples on
absorbent pads or cards, should be
enclosed in watertight plastic bags and
shipped in a sturdy outer package or
commercial envelope. Samples on glass
or plastic slides should be cushioned
and shipped inside a sturdy (not
flexible) outer package. Triple packaging
should be used for liquid samples.
3. Documentation. The biorepository
should notify a recipient before
shipping to confirm that the recipient
can accept the package and properly
store the biospecimens. Packages should
be bar-coded and tracked by the
biorepository and the recipient. A
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biorepository shipping log, either
written or computerized, should track
shipments from and to the biorepository
and include the following information:
shipment/invoice number; recipient (or
source); date shipped (or received);
courier name and package tracking
number; sample description; number of
samples shipped (or received);
condition on arrival; study name and
number, if available; key investigator’s
name; and signature of biospecimen
recipient (ISBER 2005).
Standardized paperwork should
accompany shipments. Biorepository
personnel should send a shipping
manifest, a list of sample identification
numbers, and descriptions of samples
electronically to the biospecimen
recipient and include a hard copy of the
manifest in the shipment itself.
Identifying data should be available for
the use of shipping or customs agents as
well. Some shipping agents require an
itemized list of contents between the
secondary and outer packaging of
diagnostic biospecimens.
Biorepository personnel should verify
biospecimen labels and pathology
reports against the packing list for
consistency and correctness.
A feedback questionnaire should be
enclosed in each shipment for QA/QC
purposes, requesting feedback about the
quality of samples received (Eiseman et
al. 2003).
4. Regulatory considerations. Consult
ISBER Best Practices (ISBER 2005) for
information concerning international
transport regulations and classifying
biospecimens for shipment. Failure to
conform to international air transport
regulations will result in delay or
refusal of shipment and probable
biospecimen deterioration. Regulations
must be followed precisely, since
improperly packaged or labeled goods
will be refused for transport by airlines
or delayed at customs (Holland et al.
2003). For international shipments,
biorepository personnel should prepare
safety declarations for foreign customs
(Landi and Caporaso 1997).
For packaged biospecimens,
International Air Transport Association
(IATA 2004) regulations require three
packaging components: (1) A primary
inner receptacle, (2) secondary
packaging, and (3) rigid outer packaging.
The primary receptacles should be
packed in the secondary packaging so
that, under normal conditions of
transport, they cannot break, be
punctured, or leak their contents into
the secondary packaging. Secondary
packaging should be secured in outer
packaging with cushioning material.
Secondary containers for diagnostic
biospecimens should be certified by the
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manufacturer prior to use. Outer
packaging is regulated as to material,
size, and ability to withstand a 1.2meter drop test as outlined in IATA
Section 6.6.1. Leakage of the contents
should not affect the cushioning
material or outer packaging (IATA
2004). Some shipping agents designate
the same three layers of packaging and
absorbent material between outer and
secondary packaging. Specifics of the
primary containers for diagnostic
biospecimens, liquid biospecimens, and
solid biospecimens are described on the
shipping agents’ Web sites. Styrofoam
chests containing dry ice may be used
to ship samples that should be
maintained at low temperatures (Landi
and Caporaso 1997). However, the
shipping agent may exclude Styrofoam
as an acceptable outer packaging. To
confirm that shipping conditions meet
sample needs, shipping personnel
should review test reports from
packaging that has been tested to meet
regulation requirements. Packaging
should be used in the same
configuration under which it was tested
(ISBER 2005).
Consult OSHA regulations to
determine whether a substance requires
a biohazard label. Ship Category A
infectious substances in accordance
with IATA Packing Instruction (PI) 602
(IATA 2004). Ship Category B infectious
substances (also designated as
diagnostic specimen, clinical specimen,
or biological specimen, category B) in
compliance with IATA PI 650.
Ship dry, noninfectious biospecimens
(e.g., dried blood, tissue, saliva, or hair)
with special packaging as specified by
the shipping agent. Wet-fixed
biospecimens shipped in formalin/
formaldehyde should include ‘‘ICAO/
IATA’’ under additional handling
information (Grizzle 2004).
5. Training. Training of personnel for
shipment of biospecimens is strongly
recommended (ISBER 2005). Training
should be updated at least every 2 years.
Dangerous goods training may be
required for some biorepository
personnel. A record of training should
be maintained of all employees involved
in the shipping process. Training and
certification are available through
various shipping vendors (ISBER 2005).
On completion of training, the training
organization issues a certificate of
completion.
B. Collecting and Managing Clinical
Data
Extensive annotation of tissue
biospecimens is crucial to the overall
usefulness of the biorepository as a
resource for scientific research (Eiseman
et al. 2003). Biorepositories store
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biospecimens collected using multiple
methodologies and procedures,
including tissue collection, blood
draws, and buccal cell and urine
collections. Researchers rely on banked
biospecimens for a wide variety of
purposes, including target discovery
and validation, prevention research,
research on early detection, genetic
studies, and epidemiologic analyses.
The data recorded by biorepositories
depend on the types of biospecimens
they collect and the studies they
support. It is critically important for
excellence in research that NCIsupported biorepositories use SOPs for
biospecimen collection, processing, and
storage. While harmonization of these
procedures is the ultimate goal, the NCI
is engaged in research to identify the
best set of protocols and methods to
produce high-quality biospecimens.
Regardless, biospecimens must maintain
donor privacy in all collection of
clinical data.
Determining Data Sets
1. The NCI will define the minimal
clinical data to be collected for all
biospecimens, as appropriate for the
research protocol at NCI-supported
biorepositories. This universal set will
change over time. Biorepositories
should adopt the harmonized
nomenclature being developed by the
NCI for clinical data and establish
algorithms to translate raw data into
standard nomenclature.
2. NCI-supported biorepositories
should establish additional data
categories for specific types of research.
Collecting Clinical Data
1. NCI-funded biorepositories should
strive to collect and store all relevant
clinical data associated with a
biospecimen. This will maximize the
use of biospecimens for current and
future short-term and longitudinal
studies. Biorepositories should
encourage participating investigators to
annotate biospecimens to the fullest
extent possible consistent with
biorepository goals and/or study design.
Data collection activities should
conform to FDA requirements if and
where applicable, so that the data can be
cited and/or used in Investigational
New Drug and Investigational Device
Exemption applications.
2. The NCI will develop a tiered
system of clinical data annotation,
which will define the potential of any
given biospecimen in supporting highquality research and will guide
decisions on the appropriate use of
biospecimens by the scientific
community.
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Informatics To Support the Tracking of
Data 3
1. A biorepository informatics system
should track all aspects of biospecimen
collection, processing, and distribution
to prevent the confusion of samples and
to support annotation.
2. A biorepository should comply
with applicable privacy laws, human
subjects regulations, and local
institutional requirements governing the
acquisition of biospecimens and
associated clinical data (see the section
on Ethical, Legal, and Policy Guidelines
for more discussion of clinical data and
the protection of patient privacy).
Longitudinal Clinical Data 2
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3. NCI-supported biorepositories
should employ a uniform,
nonredundant vocabulary (caBIG
common data elements [CDEs]) for
clinical data across sponsored
biorepositories.
4. NCI-supported biorepositories
should track researchers’ requests for
specific clinical data to guide
refinements of data collection
guidelines.
5. NCI-supported biorepositories
should employ a method for validating
the clinical data collected. These data
should be validated to ensure accuracy
in downstream scientific research.
6. NCI-supported biorepositories
should comply with applicable privacy
and human subjects protection
regulations governing the acquisition of
biospecimens and associated clinical
data. Biospecimens should be linked to
clinical data in compliance, as
applicable, with the HIPAA regulations
and with HHS and FDA human subjects
protection regulations.
QMS
Each biorepository should either
establish a written QMS or adhere to
one published by the organization with
which the biorepository is associated.
The QMS should describe the
biorepository’s QA/QC programs and
describe approaches for ensuring that
program requirements are met (ISBER
2005). The QMS should describe
procedures for conducting audits in the
following areas:
1. Equipment maintenance and repair.
2. Training records and adherence of
staff to required training schedules.
3. Data management.
4. Recordkeeping.
5. Adherence to SOPs.
1. As the study requirements dictate,
NCI-supported biorepositories should
collect and store longitudinal data
following applicable informed consent
requirements.
2. Depending on the study design,
information linked to samples should
include demographic data, lifestyle
factors, environmental and occupational
exposures, cancer history, structured
pathology data, any additional
diagnostic studies, information on
initial staging procedure, treatment data,
and any other information relevant to
tracking a patient’s future status for
clinical outcomes. NCI-supported
biorepositories should facilitate
followup with patients.
3. NCI-supported biorepositories
should maintain identifying and contact
information as detailed in the study
protocol and as permitted under law
and by patient consent to enable
biospecimen use for longitudinal
studies.
4. NCI-supported biorepositories
should establish, as necessary, new
policies and protocols to facilitate the
submission of outcome data, ensure
uniformity and patient privacy, and
track treatment and outcomes.
5. To collect high-quality longitudinal
information, NCI-supported
biorepositories should require dedicated
and trained personnel to curate the
validation process and QA/QC.
2 The NCI plans to partner with its cancer centers,
advocacy groups, and relevant stakeholders to
collect longitudinal data related to particular
studies.
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C. Quality Assurance/Quality Control
(QA/QC)
NCI-supported biorepositories should
develop a formalized QA/QC policy to
minimize errors that could adversely
affect scientific results. QA/QC policies
should be customized for the intended
and potential uses of biospecimens in a
given biorepository.
SOPs Manual
Each biorepository should develop
written policies and procedures in an
SOPs manual. The SOPs should state
policies and define and describe all
procedures in detail.
1. Contents. The SOPs manual should
specifically include at least the
following information:
• Biospecimen-handling policies and
procedures, including supplies,
methods, and equipment used.
• Laboratory procedures for tests
performed in-house and any
biospecimen aliquoting or other
processing.
• Policies and procedures for
shipping and receiving biospecimens,
including the MTAs to be used.
3 The NCI intends to assist biorepositories in
choosing informatics approaches that meet the
necessary data tracking and management
requirements set forth by the institute.
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• Policies for managing records.
• QA/QC policies and procedures for
supplies, equipment, instruments,
reagents, labels, and processes
employed in sample retrieval and
processing.
• Safety programs.
• Emergency safety policies and
procedures, including the reporting of
staff injuries and exposure to potential
blood-borne pathogens.
• Policies and procedures for the
investigation, documentation, and
reporting of accidents, errors,
complaints, and adverse outcomes.
• Policies and procedures and
schedules for equipment inspection,
maintenance, repair, and calibration.
• Procedures for disposal of medical
waste and other biohazardous waste.
• Policies and procedures regarding
the training of technical and QA/QC
staff members.
2. Implementation. The biorepository
director and/or the individual
responsible for the QA/QC program
should review and approve all SOPs
and associated process validation
studies prior to implementation. Upon
implementation, all SOPs must be
followed as written.
3. Modifications. Each biorepository
should have a document control
program and policies for governing,
modifying, or revising SOPs. Each
modification should be approved by the
biorepository director or other
appropriate individual(s).
Implementation dates should be
recorded for all procedures. All SOPs
should be reviewed every 2 years and
have the current date of renewal on the
posted copy.
4. Staff access and review. Current
copies of the SOPs manual should be
stored in designated locations and
available to the staff at all times. The
staff should review new and revised
policies and procedures prior to
implementation. Documentation of staff
review and any associated training
should be recorded.
D. Biosafety
Laboratories and biorepositories that
handle biospecimens expose their
employees to risks involving infectious
agents and chemicals, as well as the
general dangers of a laboratory. A
predictable, yet small, percentage of
biospecimens will pose a risk to the
biorepository workers who process
them. All biospecimens should be
treated as biohazards (Grizzle and
Fredenburgh 2001). In addition to taking
biosafety precautions, biorepositories
should adhere to key principles of
general laboratory safety.
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laboratory biosafety for use in
Laboratories and biorepositories must developing an overall program in safety
and associated training programs.
assume that all human biospecimens
Among the agencies that oversee
are potentially infective and
laboratory biosafety programs are the
biohazardous, regardless of whether
OSHA and the CLSI. The CDC oversees
they are frozen, dried, fixed, processed
programs that handle Select Agents.
in paraffin, or otherwise processed.
2. Identify risks and other general
Human biospecimens are defined as
issues of biosafety. Identify frequent
blood, other bodily fluids, solid tissues,
biorepository activities and analyze
tissue products, and cell lines. The
safety issues involved with each
greatest risks are posed by exposure to
activity, and implement suitable
the human immunodeficiency virus
controls.
(HIV), the hepatitis viruses, and the
3. Improve biosafety by developing
prion that causes Creutzfeldt-Jakob
written working guidelines that are
disease, but there are additional
based on Federal and State
significant exposures as outlined by
requirements, experience, and
Grizzle and Fredenburgh (2001).
published information. These guidelines
29 CFR 1910.1030 requires that
should be reviewed and updated
vaccination be offered to all personnel
regularly and modified in response to
who may be potentially exposed to
problems or if they prove ineffective.
human blood, body fluids and tissues,
4. Develop and implement a training
or other potentially infectious materials. program. Each employee should receive
Biorepository work practices must be
training in relevant areas of safety before
based on universal precautions practices beginning work, and the training should
similar to those used in laboratories and be updated annually.
clinical settings. Two basic important
5. Record and arrange for treatment
safety precautions should be followed in for all incidents where personnel are
laboratories and biorepositories that
exposed to biohazards or are potentially
handle biospecimens: Wash hands
infected.
frequently, and always wear face
General Laboratory Safety
protection and gloves when handling
biospecimens or working within or
In addition to biosafety,
around freezers. Additional good
biorepositories need to follow strict
general laboratory work practices are
general safety regulations and
outlined in Table 4 of Grizzle and
procedures. Recommendations
Fredenburgh (2001).
regarding general laboratory safety
A biorepository must establish clear
follow. Additional details and
policies regarding the inclusion or
references regarding biorepository safety
exclusion of high-risk biospecimens.
can be found in the ISBER Best
Human biospecimens should be
Practices, Section J, and Appendix A
handled according to, at a minimum,
(ISBER 2005).
BSL–2 as outlined in the CDC/NIH
1. Chemical safety. Follow U.S.
booklet Biosafety in Microbiological and regulations concerning chemical safety,
Biomedical Laboratories (CDC and NIH
which protect employees from exposure
1999). Under BSL–2, when biospecimen to hazardous levels of chemicals in
containers are opened for processing,
biorepositories, including, for example,
they should be handled in a BSL–2
formaldehyde used to fix tissues.
biological safety cabinet (hood). All
Biorepositories should also comply with
biorepositories that handle human
OSHA regulations governing
biospecimens should operate under the
occupational exposure to hazardous
OSHA’s blood-borne pathogens
chemicals in laboratories (29 CFR
standard and should develop an
1910.1450).
exposure control plan (29 CFR
2. Electrical safety. Freezers and other
1910.1030). Additional precautions
biorepository equipment must be
apply, as outlined in the CDC booklet.
properly grounded.
Some activities may require higher
3. Fire safety. Emergency plans must
containment, and in other cases, less
be in place and practiced on a regular
stringent practices may be acceptable.
basis. Purchase noncombustible freezers
Therefore, it is best to ensure that
and refrigerators.
4. Physical safety. Repetitive strain
biorepository staff members are trained
and back injuries are typical
to perform risk assessments and
occupational biohazards in the
determine appropriate biosafety levels.
biorepository. Take proper precautions
Guidelines
to prevent these and other accidents and
1. Identify governmental and
injuries typical of the laboratory/
accrediting agency requirements
biorepository environment.
5. Radiological safety. Any laboratory
regarding biohazards and likely sources
or biorepository that processes
of current information concerning
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Biohazard Precautions
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radioactive materials requires proper
training and equipment to obtain
licenses from the NRC and/or local
agencies.
E. Biorepository Informatics: Data
Management and Inventory Control and
Tracking
Driven by advances in genomics and
proteomics, informatics systems have
become increasingly critical to the
research enterprise. Informatics systems
that support NCI-sponsored
biorepositories must be robust and
reliable and able to meet changing needs
while remaining interoperable.
An informatics system should support
all aspects of biorepository operations,
including (but not limited to) patient
enrollment and consent; biospecimen
collection, processing, storage, and
dissemination; QA/QC; collection of
patient data; data security; validation
documentation; and management
reporting functions. The system should
also manage clinical annotations to the
biospecimens and, where possible,
support those patient followup needs
permitted by ethical considerations and
appropriate regulations. Biorepository
systems should also be interoperable
with those that house endpoint assay
data (e.g., proteomics, genomics) to
ensure that integration of data from
multiple sources will be possible. The
NCICB has developed caBIG
(see https://cabig.nci.nih.gov/), a
voluntary network or grid connecting
individuals and institutions to enable
the sharing of data and tools. The
informatics systems selected or
developed for new biorepositories
should be caBIG-compatible at the
‘‘silver’’ level (see https://
cabig.nci.nih.gov/
guidelines_documentation) with the
goal of interoperability with other
systems. Where systems for existing
biorepositories are being replaced or
upgraded, they should also be
compatible at the silver level. For
existing software, migration paths to
silver level compatibility should be
identified, with the expectation that this
will become a requirement in later
versions of these guidelines.
General Informatics Guidelines
1. Each biospecimen should be
assigned a unique identifier (number
and/or barcode) at the time of
collection.
2. Specific clinical and
epidemiological data should be
identified by the same number and/or
barcode.
3. The same number or code should
be used to track a biospecimen from
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collection through processing, storage,
and distribution.
4. The biorepository database should
be updated each time the biospecimen
is moved within or out of the
biorepository.
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Functionality of Biorepository
Informatics Systems
1. Biorepository informatics
management systems should be based
on use cases and other domain level
modeling techniques (e.g., data or object
models) that capture the needs for
managing biorepositories. SOPs for the
activities carried out in a biorepository
should largely drive the design of
informatics systems.
2. At the biorepository level,
informatics systems should focus on
inventory functions, tracking all phases
of sample acquisition, processing,
handling, QA/QC, and distribution from
collection site (patient) to utilization
(researcher). Restocking of returned,
unused samples from the researcher, if
allowed, also must be tracked. Tracking
should also include documenting
multiple, preexisting, external physical
biospecimen identifiers, such as
barcodes with non-identifying
information.
3. The informatics system must be
able to link the information it contains
to the physical biospecimen containers
via labels on those containers (e.g.,
paper labels/barcodes).
4. Systems should utilize data
elements from a common metadata
biorepository, such as the Cancer Data
Standards Repository (caDSR, see
https://ncicbsupport.nci.nih.gov/sw/
content/caDSR.html).
5. The informatics system should
account for ‘‘legacy’’ identifiers and be
able to track multiple identifiers and
any barcodes generated in the resource.
6. Informatics systems should be able
to track clinical data associated with a
biospecimen and minimally should
support the collection of a ‘‘universal
clinical data set.’’ The NCI will work
with biorepositories to develop this
minimal clinical data set to be collected
for all biospecimens, as appropriate for
the research protocol at NCI-supported
biorepositories. This universal data set
will change over time. The informatics
system should be able to link
biospecimen data with external sources
of clinical data.
7. Tools used to extract structured
information from free-text data, such as
surgical pathology reports, should be
validated as to their accuracy in
performing that task. Biorepositories
should routinely monitor the
performance of such tools.
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8. All NCI-supported biorepository
databases at an individual institution
should be in a secure site monitored by
the institution. All systems should have
a backup plan. Biorepositories should
eliminate unsecured, ad hoc databases,
such as those recorded in Excel, Access,
and FileMaker Pro, and manage data by
the central informatics system.
Institutions without the capabilities to
provide such infrastructure should seek
external hosting arrangements for such
a system.
Integration
1. The informatics system at each
NCI-supported biorepository should be
able to integrate with the host
institution’s clinical data systems,
including the anatomic pathology
laboratory information system (AP–LIS),
the clinical pathology laboratory
information system (CP–LIS), and the
Cancer Registry. The NCI is developing
the caTISSUE Clinical Annotation
Engine to assist in this effort.
2. NCI-supported biorepositories
should use informatics systems that
support the linking of biospecimens
with associated research data (e.g.,
genomic and proteomic analyses) and,
when available, agreed upon limits, if
any, on use of the sample. If applicable,
NCI-supported biorepositories should
track the levels of consent that each
patient has given for the use of his or
her biospecimens and whether that
consent has been withdrawn.
Interoperability
1. Informatics systems at individual
NCI-supported biorepositories should be
connected through a centralized,
enterprise-level framework.
2. Semantic and syntactic standards
should be common across the
individual bioinformatics systems.
3. While informatics systems at NCIsupported biorepositories will have
different informatics requirements based
on workflow, systems should be
interoperable to integrate clinical and
research data and establish distributed
tissue resources.
4. NCI-supported biorepositories
should support a minimum set of
common queries that can be run across
all systems using common data
elements. In the future, all NCIsupported systems should support
queries across multiple systems or
biorepository networks.
Development
1. Software and system development
methodology should be followed for
initial development and subsequent
revisions.
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2. Software and system engineering
organizations should meet at least
Capability Maturity Model Integration
(CMMI) Level 3 (Carnegie Mellon 2005).
Ethical and Legal Issues 4
1. An honest broker-guided procedure
should be used to protect research
participants’ privacy for samples and
data in all NCI-sponsored
biorepositories. The honest broker may
be considered a function of the
informatics system, not necessarily an
individual.
2. The system should allow users to
perform only those operations for which
they have permission at the object,
record, and attribute levels.
3. Permissions and user roles should
be defined to ensure proper access to
data and biospecimens in compliance
with all applicable privacy laws and
human subjects regulations (45 CFR part
46). Data about biospecimens should be
provided on terms that are not
exorbitant, do not grant reach-through
rights, or are otherwise not unduly
onerous (i.e., are consistent with NIH
research tools and data policies—see
https://www.nih.gov/news/researchtools/
and https://grants1.nih.gov/grants/
policy/data_sharing/index.htm).
4. All existing systems should be
mapped to minimal standards (to be
defined by NCI), and a timeline should
be set for implementation to encourage
the adoption of a federated informatics
system.
5. NCI-supported biorepositories
should meet relevant State and Federal
requirements encouraging the use of
electronic signatures where appropriate,
and IT accessibility standards for
handicapped persons.
Assessing Biorepository Informatics
Systems
1. Existing or ‘‘legacy’’ biorepositories
should be evaluated on the basis of their
respective levels of informatics
capabilities, including the usage of
CDEs, access to data through standard
queries, data accuracy, and adherence to
other stated guidelines.
2. The biorepository informatics
system should provide reporting
capabilities that allow biorepository
managers to monitor its state in terms of
the scientific best practices described
elsewhere in these guidelines. The
system should provide information to
those managers to maintain the requisite
level of biospecimen quality.
4 The NCI will develop and implement SOPs for
annotating clinical data to accompany samples
stored in NCI-supported biorepositories. Informatics
systems should be designed to accept these
annotations and link them with samples in a
deidentified manner.
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3. Biorepository informatics systems
should be able to provide vital system
statistics and audit logs of all access to
protected health information in the
database.
NCI Infrastructure To Support These
Guidelines
The NCI has developed a number of
initiatives that may be used to assist its
Cancer Centers that wish to implement
these guidelines and is currently
exploring further mechanisms to assist
the community with overall
implementation of these
recommendations. These initiatives
include the caBIGTM (see https://
cabig.nci.nih.gov/), an infrastructure
project designed to facilitate the
exchange of data and programs among
NCI-supported Cancer Centers. An
associated Tissue Banking and
Pathology Tools Workspace provides
specifically for the needs of
biorepositories. As part of this program,
the NCI is developing the following
components:
1. caTISSUE Core. An Intra/internetbased application for managing a
biorepository. caTISSUE also provides
an object model through which existing
biorepository systems may be used as a
standard to share biospecimen data.
2. caTISSUE-Clinical Annotation. An
application for handling the annotation
of biospecimens with clinical data.
3. caTIES. A system for extracting
concepts from free text pathology
reports into a structured data model.
The caDSR and its associated services
provide the infrastructure to handle the
standardized terminologies referred to
in the recommendations. caBIG silverlevel compatibility is outlined in the
caBIG documentation at https://
cabig.nci.nih.gov/
guidelines_documentation.
2. Ethical, Legal, and Policy Guidelines
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A. Informed Consent
Informed consent (pursuant to the
human subjects regulations at 45 CFR
part 46) is designed to present potential
human research participants with
sufficient information—including
anticipated procedures, risks, and
benefits—to make an informed decision
to participate in research studies.
Obtaining informed consent for the
collection and storage of biospecimens
and for their use in future research is
challenging since the specifics of the
future research are often not known at
the time of biospecimen collection.
Despite this challenge, the informed
consent information describing the
nature and purposes of the research
should be as specific as possible. The
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specific type of research that may be
done in the future on donated
biospecimens may be sufficiently
anticipated and described in the original
informed consent to satisfy HHS
regulations.
1. The timing of consent (e.g. before
or after surgery) to use specimens for
research purposes should not be
imposed rigidly, but the donor must be
informed by a number of important
considerations, including ethical
guidelines and logistical constraints.
2. The NCI will provide
biorepositories with a sample consent
template, for example, the NCI Sample
Consent Form for Use of Tissue for
Research (Appendix 1), which should
be adapted to conform to applicable
state law and local policy, and approved
by the appropriate IRB. Although there
should be areas of uniformity across all
NCI-supported biorepositories, there
should also be some flexibility so that
biorepositories can adapt the sample
template to their needs.
3. The sample consent forms used by
NCI-supported biorepositories should, if
appropriate, address the use of
biospecimens or data by nongovernment individuals or entities, the
issue of research leading to future
development of commercial products,
and the release of individual research
results to participants.
4. Research participants should be
allowed to specify the types of research
for which their biospecimens may be
used, including use in additional future
projects.
5. NCI-supported biorepositories
should develop policies and procedures
to handle biospecimens and associated
computer records for which consent has
been withdrawn. Informed consent
documents should highlight the
research participant’s or source’s ability
to withdraw consent and describe what
will take place should consent be
withdrawn.
• In the event that consent is
withdrawn for the continued research
use of biospecimens, individually
identifiable biospecimens and any
distributed samples must be withdrawn
from the biorepository, and attempts
should be made to retrieve samples. In
addition, consent can also be withdrawn
for the analysis phase of identifiable
private information, since it is
considered human subjects research.
However, a processed sample and the
research data generated from it cannot
be rescinded.
• In the event that consent is
withdrawn, biospecimens should be
destroyed or alternatively stripped of all
direct and indirect identifiers. However,
biorepository managers should be
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sensitive to cultural issues and should
work with affected groups to develop
mechanisms for returning or destroying
biospecimens. The option of stripping
all direct and indirect identifiers from
biospecimens should be included in
consent forms for subjects who later
withdraw consent.
6. NCI-supported biorepositories that
house identifiable biospecimens and
data from children that are obtained
with parental or guardian permission
should continually monitor the need for
obtaining informed consent when a
child reaches the legal age to consent for
a research study. If the biospecimens/
data are used in studies that require
ongoing interactions or interventions
with the subject or that continue to meet
the regulatory definition of ‘‘human
subjects research’’ and the child reaches
the legal age to consent for new
research, this subject’s participation in
research is no longer regulated by 45
CFR 46.408. A legally effective informed
consent should be obtained from the
child turned adult subject unless the
IRB waives the requirement for
obtaining informed consent under CFR
46.116(d).
7. FDA regulations must be
considered for research on existing
biospecimen collections. These
regulations may not exempt in vitro
studies from the requirement for
documented, IRB-approved consent
from the sources, even in cases where
biospecimens have been deidentified.
8. NCI-supported biorepositories
should establish and document
transparent policies governing records
and biospecimen retention. These
policies should be made available to
participants, either in the informed
consent document or in supporting
information. In addition, usage
agreements with recipient investigators
should specify the retention policy of
the recipient investigator.
• For clinical biospecimens, the
timing is informed by Federal and State
laws governing how long records are
retained.
• For research biospecimens, the
ideal is permanent storage if there are
sufficient resources and storage space,
subject to reasonable foreseeable
research utility (i.e., QA/QC, dated data
sets).
• Biorepositories should be reviewed
periodically (e.g., at the time of funding
renewal) to determine the utility of
existing biospecimens, the need for new
biospecimens, etc.
• In the event that biorepositories
close because of lack of funding or
otherwise cannot maintain or use the
biospecimens, the availability of the
biospecimens for transfer should be
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announced to the research community
(e.g., via a Web site). The transfer of
such biospecimens must be consistent
with human subjects regulations.
For additional information about IRBs
and the requirement for OHRP-approved
assurance of compliance, see the OHRP
Web site at https://www.hhs.gov/ohrp/.
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B. Access to Biospecimens and Data
Access to human biospecimens for
research purposes is crucial for fields
such as genomics, proteomics,
metabolomics, molecular imaging, and
nanotechnology. Researchers in these
areas often rely on federally funded
biorepositories for high-quality
biospecimens and associated data.
1. NCI-funded biorepositories should
establish clear guidelines, as the
research community’s custodian of
biospecimens, for sample distribution
(and clinical data sharing) consistent
with ethical principles, prevailing laws
and regulations, and, if applicable,
consent form language. The NCI intends
to have a substantial role in developing
the best practices on which these
guidelines will be based. These
guidelines should build on the work of
other groups and should be:
• Clear to ensure their
comprehension and adherence.
• Flexible so that biorepositories may
be responsive to changing scientific
needs.
• Amendable to facilitate their
adaptability over time.
• General enough so they may be
applied to different kinds of
biorepositories.
In addition, the best practices will
delineate when biospecimens (and
clinical data) should be narrowly or
broadly accessible and what
justifications will be expected of funded
biorepositories.
2. Investigators should have timely,
equitable, and appropriate access to
human biospecimens stored at NCIsupported biorepositories without
undue administrative burden. A
prescribed mechanism for rapid
turnaround of requests should be in
place at NCI biorepositories that (1)
relies on a peer (or stakeholder) review
system that sets priorities as to how
collected biospecimens should be
allocated to qualified recipient
investigators and (2) ensures that
proposed uses are consistent with the
participant’s consent, research purpose,
and allowable use of biospecimens.
• Decisions should be guided by a set
of general principles that include:
• Fair and clearly communicated
access procedures.
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• Protocol-specific requirements that
must be met before other access is
considered.
• Preference for access to
investigators from the protocol
coordinating group or NCI-funded
investigators before access is granted to
others.
• Access granted on the basis of
scientific merit with the following
criteria:
1. Institutional research qualifications
and proven investigator experience with
the method proposed.
2. Standardized, validated research
biomarker assay methodology.
3. A research plan appropriate to
answer the study question.
4. Statistical evaluation which shows
that the study question can be addressed
with the samples available.
5. The investigator has defined
funding and IRB approval for the
project.
6. The investigator has defined a
study interval and will provide
information about the project outcome
at the end of that period.
7. The investigator agrees to group
publication guidelines.
8. The investigator agrees to make
assay data available according to agreedupon rules.
• Access includes negotiated
arrangement with a clinical protocol
coordinating group to provide timely
statistical analysis of study results.
• Investigator agrees to compensate
tissue bank for specimen preparation
and shipping and coordinating group
statisticians for timely data analysis.
• Provide investigator agreements,
principles and process for review.
• Access policies and procedures
should apply to all biorepositories and
should include the following:
—Investigator agreement covering
confidentiality, use, disposition, and
security of biospecimens and
associated data.
—Investigator’s written agreement in a
Material Transfer Agreement that
complies with the NIH Research Tool
Policy. (https://ott.od.nih.gov/policy/
rt_guide_final.html).
—Appropriate ethical oversight.
• An appropriate model for
biospecimen and associated clinical
data usage should be based on matching
usage with appropriate scientific
investigations (e.g., discovery,
prevalence, initial validation,
hypothesis testing). The level of
identifiability of the biospecimen
should be appropriate for the proposed
research.
• The local decisionmaking body
should take local principles into
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account. Ethical considerations should
come first among principles that guide
the decisionmaking process.
• Guidelines should apply to all new
collections and, whenever possible, to
existing collections.
• An appeals process should be
established for addressing disputes over
allocation decisions.
3. Charges for samples should be used
only to recover costs. Cost-recovery
models, and thus pricing strategies for
biorepositories, can vary. If applicable
and where monetary charges are
necessary, charge only to recover costs
as appropriate to retrieve and
disseminate specimens.
4. NCI-supported biorepositories
should use a system of data access with
defined levels of access privileges.
• Access levels should be described
in the protocol for operation of the
biorepository, as well as in the informed
consent form, and should be approved
by an IRB and/or bioethics-scientific
advisory board.
• Access to research participants’
identities and medical, genetic, social,
and personal histories should be
restricted to only those biorepository
staff members who need to access such
records as part of their assigned duty or
to those persons permitted access by
law.
• The number of personnel allowed
to access links and reidentify
information should be kept to a
minimum, and access should be
appropriately monitored to ensure
compliance.
5. NCI-supported biorepositories
should store human biospecimens for
research purposes only and should not
serve an individual research
participant’s needs or wishes.
C. Privacy Protection
Research depends on protecting the
privacy of individuals who contribute
biospecimens to biorepositories and on
maintaining the confidentiality of
associated clinical data and information
(Eiseman et al. 2003). Applying the
highest possible ethical standards is
necessary to ensure the support and
participation of patients, physicians,
researchers, and others in biorepository
activities (NBN Blueprint 2003). With
the recent advances in genomic and
proteomic technology, the sequencing of
the human genome, and the increasing
reliance by biorepositories on electronic
and web-based databases to track data,
it is even more crucial to address the
risk of unintended release or disclosure
of sensitive information, which can
place individuals at risk for
discrimination and related groups at
risk for stigmatization.
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1. NCI-supported biorepositories
should establish clear policies for
protecting the privacy of information.
These policies may include data
encryption, coding, and establishing
limited access or varying levels of
access to data by biorepository
employees.
2. In applications for support,
biorepositories should document their
policies, describe mechanisms for
auditing effectiveness and for
enforcement, describe required training,
and specify security measures
pertaining to employee access to data
and biospecimens.
3. The level of security should be
appropriate to the type of biorepository.
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D. Custodianship
1. NCI-supported biorepositories
should propose plans for formal and
continuing responsibility for
custodianship (not ownership 5) of
collected biospecimens and associated
data as part of the biorepository
protocol. Biorepositories should address
this issue in applications for funding,
specifically, (a) How does the
biorepository propose to ensure the
physical integrity of biospecimens? (b)
How does the biorepository propose to
ensure the integrity of the patient data
that accompany the biospecimens? (c)
What plans and protocols exist for the
distribution of samples to investigators?
(Also see Access to Biospecimens and
Data, section B.2 above.)
2. Biorepositories should address
plans for the handling and disposition
of biospecimens and associated data at
one or more of the following points: (a)
End of the budget period of the grant, (b)
accomplishment of the specific research
objectives of the study, (c) depletion of
biospecimens, or (c) achievement of
critical data endpoints.
3. Individuals responsible for
allocating biospecimens or associated
data from biorepositories should
disclose financial or professional
conflicts of interest to existing conflictof-interest committees in the host
institution or to the biorepository’s
governing board.
5 The issue of ownership of biospecimens,
associated data, and research findings remains
ambiguous and controversial, partly because of
wide variation and lack of harmonization in the
regulatory and legal standards used by courts, state
legislatures, and Federal regulators in determining
ownership rights. The end result has been the use
of unclear or misleading legal language in informed
consent and other documents that does not
adequately address the issue of ownership, by
either the individual who is the source of the
biospecimen, the principal investigators who
collect and bank the biospecimens, the recipient
investigators who use the samples for research
purposes, or the biorepository and its host
institution.
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4. NCI-supported biorepositories
should use clear and specific informed
consent language to ensure that those
who contribute biospecimens and/or
data for research purposes are fully
informed that the research done with
these biospecimens may help to develop
products, tests, or discoveries that may
have commercial value (see sample
template, Appendix 1).
E. Intellectual Property
Inventions arising from research using
annotated biospecimens may have
commercial value. As researchers and
industry sponsors have sharply
increased their demand for properly
prepared and clinically annotated
biospecimens, some institutions have
begun to assert control over
biospecimens, associated data, and
research findings. The current
variability in IP policies at institutions
hosting NCI-supported research and
biorepositories may ultimately lead to
problems in biospecimen and data
access, timely and open publication,
sharing of research findings, and
establishment of new biorepositories.
1. For the transfer of materials in
academic-industrial collaborations, use
the NIH SLA, the UBMTA, or other
MTA with terms consistent with the
NIH Research Tools Policy and NIH data
sharing policies. The above agreements
should be modified where necessary to
cover human subjects research. A
sample NIH SLA modified to address
the transfer of human biospecimens is
attached as Appendix 2.
The following Internet sites are
relevant to this issue:
• https://ott.od.nih.gov/policy/
research_tool.html.
• https://www.autm.net/aboutTT/
aboutTT_umbta.cfm.
• https://grants1.nih.gov/grants/
policy/data_sharing/index.htm.
2. Recognize that biorepository staff
members as custodians of biospecimens
are not a priori considered inventors
under patent law for inventions made
using materials distributed by the
biorepository. In general, the staff
should be informed that one whose sole
contribution to an invention consists of
the routine collection, handling, storage,
and disbursement of biospecimens
might not rise to the level of ‘‘inventor’’
of an invention. Inventorship is
determined by patent law and must be
considered on a case-by-case basis by
trained legal personnel.
3. Recognize that biorepositories have
no inherent rights to future IP, such as
reach-through rights in inventions made
by investigators using samples obtained
from the biorepository.
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4. Ensure through appropriate MTAs
that research data obtained using
biospecimens are made available to the
research community, consistent with
NIH data sharing policies such as the
Final NIH Statement on Sharing
Research Data (https://grants.nih.gov/
grants/guide/notice-files/NOT-OD-03032.html).
References
Caporaso N, Vaught J. Collection, processing
and analysis of preneoplastic specimens.
In: Cancer Precursors: Epidemiology,
Detection, and Prevention. EL Franco, TE
Rohan, Eds. (New York: Springer-Verlag,
January 2002).
Carnegie Mellon Software Engineering
Institute. Capability Maturity Model
Integration (CMMI) Web site, 2005.
Viewed July 11, 2005, at https://
www.sei.cmu.edu/cmmi/.
CDC and NIH (Centers for Disease Control
and Prevention and National Institutes of
Health), U.S. Department of Health and
Human Services. Biosafety in
Microbiological and Biomedical
Laboratories (BMBL), 4th ed.
(Washington, DC: U.S. Government
Printing Office, May 1999). Viewed July
10, 2005, at https://www.cdc.gov/od/ohs/
biosfty/bmbl4/bmbl4toc.htm.
Eiseman E, Bloom G, Brower J, et al. Case
Studies of Existing Human Tissue
Repositories: ‘‘Best Practices’’ for a
Biospecimen Resource for the Genomic
and Proteomic Era (Santa Monica, CA:
RAND Corporation, 2003).
Grizzle WE. Practical factors in collecting
tissues for research (unpublished). In:
Cooperative Human Tissue Network,
Tissue Procurement Training Manual,
September 24, 2004.
Grizzle WE, Fredenburgh J. Avoiding
biohazards in medical, veterinary, and
research laboratories. Biotechnic &
Histochem 76:183–206, 2001.
Hayes RB, Smith CO, Huang WY, et al.
Whole blood cryopreservation in
epidemiological studies. Cancer
Epidemiol Biomarkers Prev 11(11):1496–
8, 2002.
Health Information Portability and
Accountability Act of 1996 (HIPAA).
Viewed July 12, 2005, at https://
aspe.hhs.gov/admnsimp/pll04191.htm.
Holland NT, Smith MT, Eskenazi B, et al.
Biological sample collection and
processing for molecular epidemiological
studies. Mutation Res 543:217–34, 2003.
IATA (International Air Transport
Association). Infectious Substances and
Diagnostic Specimens Shipping
Guidelines, 2004, 5th ed. Available for
purchase at https://www.iata.org/ps/
publications/9052.htm.
ISBER (International Society for Biological
and Environmental Repositories). Best
practices for repositories I: collection,
storage and retrieval of human biological
materials for research. Cell Preserv
Technol 3:5–48, 2005.
Landi MT, Caporaso N. Sample collection,
processing and storage. In: Applications
of Biomarkers in Cancer Epidemiology,
E:\FR\FM\28APN1.SGM
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IARC Scientific Pub. No. 142 (Lyon,
France: International Agency for
Research on Cancer, 1997).
Mager R, Ratcliffe C, Knox K. Developing an
operational framework: Standard
workflows, operating and quality control
policies and procedures for the
collection, storage and distribution of
frozen and paraffin-embedded tissue and
blood. Prepared on behalf of DJ Kerr,
Director of the National Translational
Cancer Research Network (NTRAC) and
the National Cancer Research Institute
(NCRI), 2004.
NBN (National Biospecimen Network)
Blueprint, Chapter 3: Biospecimen and
data collection and distribution. A
Friede, R Grossman, R Hunt, et al., Eds.
(Durham, NC: Constella Group, Inc.,
2003). Viewed July 9, 2005, at https://
www.ndoc.org/about_ndc/reports/
NBN_comment.asp.
NCAB (National Cancer Advisory Board),
U.S. Department of Health and Human
Services. Summary of National Cancer
Advisory Board Meeting, November 30–
December 1, 2004, Bethesda, MD.
Viewed July 10, 2005, at https://
deainfo.nci.nih.gov/advisory/ncab/
132_1104/30nov04mins.pdf.
NCI (National Cancer Institute). The caBIG
(cancer Biomedical Informatics Grid)
Web site, no date. Viewed July 11, 2005,
at cabig.nci.nih.gov.
Appendix 1—NCI Sample Consent
Form for Use of Tissue for Research
The following tissue consent example has
been adapted from the NCI Cancer Diagnosis
Program’s sample consent form, also
available at: https://
www.cancerdiagnosis.nci.nih.gov/specimens/
model.pdf. The accompanying instruction
sheet can be found at https://
www.cancerdiagnosis.nci.nih.gov/specimens/
patient.pdf.
lllllllllllllllllllll
Name of Tissue Repository
lllllllllllllllllllll
lllllllllllllllllllll
Address and phone number
jlentini on PROD1PC65 with NOTICES
Consent Form for Use of Tissue for Research
About Using Tissue for Research
You are going to have a biopsy (or surgery)
to see if you have cancer. Your doctor will
remove some body tissue to do some tests.
The results of these tests will be given to you
by your doctor and will be used to plan your
care.
We would like to keep some of the tissue
that is left over for future research. If you
agree, this tissue will be kept and may be
used in research to learn more about cancer
and other diseases. Please read the
information sheet called ‘‘How Is Tissue
Used for Research?’’ to learn more about
tissue research.
Your tissue may be helpful for research
whether you do or do not have cancer. The
research that may be done with your tissue
is not designed specifically to help you. It
might help people who have cancer and
other diseases in the future.
Reports about research done with your
tissue will not be given to you or your doctor.
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These reports will not be put in your health
record. The research will not have an effect
on your care.
Things To Think About
The choice to let us keep the leftover tissue
for future research is up to you. No matter
what you decide to do, it will not affect your
care.
If you decide now that your tissue can be
kept for research, you can change your mind
at any time. Just contact us and let us know
that you do not want us to use your tissue.
Then any tissue that remains will no longer
be used for research. However, once
knowledge is gained from a sample, that
knowledge cannot be taken back.
In the future, people who do research may
need to know more about your health. While
the [INSERT ORGANIZATION NAME] may
give them reports about your health, it will
not give them your name, address, phone
number, or any other information that will let
the researchers know who you are.
Sometimes tissue is used for familial or
hereditary genetic research (about diseases
that are passed on in families). Even if your
tissue is used for this kind of research, the
results will not be put in your health records.
Your tissue will be used only for research
and will not be sold. However, the research
done with your tissue may help develop new
products, tests, or discoveries in the future,
which may have commercial value. The
[INSERT ORGANIZATION NAME] does not
plan to share any commercial profits with
you.
Benefits
There will be no direct benefit to you,
financially or otherwise, by participating in
this research study.
The benefits of research using tissue
include learning more about what causes
cancer and other diseases, how to prevent
them, and how to treat them.
Risks
The greatest risk to you is the release of
information from your health records. The
chance that this information will be given to
someone else is very small.
Making sure that your identity does not
become known will minimize the chance that
you will experience any psychological or
social harm. Therefore, we will take every
precaution to safeguard your identity. As
soon as it is collected, your tissue and your
clinical information will be assigned a code
number. That code number will be the only
information attached to your samples and
clinical information. All other widely used
identifying information, such as your name,
address, phone number, and Social Security
number will be removed. The master list,
which will link your name and the code
number, will be kept under lock and key and
in a computer with electronic safeguards.
Only authorized people who have agreed in
writing to protect your identity will have
access to your linked information. Therefore,
the researchers and others working with your
samples and clinical information will not
know your identity.
Your privacy is very important to us.
However, in spite of these safety measures,
we cannot guarantee that your identity will
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never become known. Due to scientific
advances or human errors, your identity
could become known. Since your DNA
information is unique to you, in the future it
may become possible for someone to identify
you. This would require someone to take
another tissue sample from you, analyze the
DNA, and compare it with data resulting
from this research project. Currently, this risk
is very slight.
If your identity were ever determined, this
might cause you and your family some
distress. In addition, if it became known that
you have disease-causing DNA changes, there
is a very small risk that you might have a
harder time getting or keeping a job or health
insurance. Some laws exist that attempt to
protect people from such job and insurance
discrimination. However, these laws may not
fully protect people from discrimination.
Since you share genetic characteristics
with your children, parents, brothers, sisters,
and other family members, it is possible that
some of these risks may apply to them as
well. However, their risks are likely to be
even lower than yours, since it will be even
more difficult to identify them than to
identify you.
Making Your Choice
Please read each sentence below and think
about your choice. After reading each
sentence, circle ‘‘Yes’’ or ‘‘No.’’ No matter
what you decide to do, it will not affect your
care. If you have any questions, please talk
to your doctor or nurse or call our research
review board at [IRB’s phone number]. If you
decide now that your tissue can be kept for
research, you can change your mind at any
time. Just contact us and let us know that you
do not want us to use your tissue for research
1. My tissue may be kept for use in research
to learn about, prevent, or treat cancer.
Yes
No
2. My tissue may be kept for use in research
to learn about, prevent, or treat other
health problems (for example: diabetes,
Alzheimer’s disease, or heart disease).
Yes
No
3. My medical record information may be
associated with research on my tissue.
Yes
No
4. Someone from the [INSERT
ORGANIZATION NAME] may contact me
in the future to ask me to take part in more
research.
Yes
No
Please sign your name here after you circle
your answers.
Your Signature: lllllllllllll
Date: llllllllllllllllll
Signature of Doctor/Nurse: llllllll
Date: llllllllllllllllll
How Is Tissue Used for Research?
(This information brochure is to be
distributed with the informed consent
document.)
Where does tissue come from?
Whenever a biopsy (or surgery) is
performed, the tissue that is removed is
examined under the microscope by a trained
doctor to determine the nature of the disease
and assist with the diagnosis. Your tissue
will always be used first to help make
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decisions about your care. After all tests have
been done, there is usually some leftover
tissue. Sometimes, this tissue is not kept
because it is not needed for the patient’s care.
Instead, a patient can choose to have the
tissue kept for future research. People who
are trained to handle tissue and protect the
donor’s rights make sure that the highest
standards are followed by the [INSERT
ORGANIZATION NAME]. Your doctor does
not work for the [INSERT ORGANIZATION
NAME] but has agreed to help collect tissue
from many patients. Many doctors across the
country are helping in the same way. If you
agree, only leftover tissue will be saved for
research. Your doctor will take only the
tissue needed for your care during surgery.
Why do people do research with tissue?
Research with tissue can help find out
more about what causes cancer, how to
prevent it, and how to treat it. Research using
tissue can also answer other health questions.
Some of these include finding the causes of
diabetes and heart disease or finding genetic
links to Alzheimer’s.
What type of research will be done with my
tissue?
Many different kinds of studies use tissue.
Some researchers may develop new tests to
find diseases. Others may develop new ways
to treat or even cure diseases. In the future,
some of the research may help develop new
products, such as tests and drugs.
Some research looks at diseases that are
passed on in families (called familial or
hereditary genetic research). Research done
with your tissue may look for genetic causes
and signs of disease.
jlentini on PROD1PC65 with NOTICES
How do researchers get the tissue?
Researchers from universities, hospitals,
and other health organizations conduct
research using tissue. They contact the
[INSERT ORGANIZATION NAME] and
request samples for their studies. The
[INSERT ORGANIZATION NAME] reviews
the way that these studies will be done, and
decides if any of the samples can be used.
The [INSERT ORGANIZATION NAME] gets
the tissue and information about you from
your hospital and sends the tissue samples
and some information about you to the
researcher. The [INSERT ORGANIZATION
NAME] will not send your name, address,
phone number, Social Security number, or
any other identifying information to the
researcher.
Will I find out the results of the research
using my tissue?
No, you will not receive the results of
research done with your tissue. This is
because research can take a long time and
must use tissue samples from many people
before results are known. Results from
research using your tissue may not be ready
for many years and will not affect your care
right now, but they may be helpful to people
like you in the future.
Though research involves the test results of
many different people, your biopsy result
involves only you. Your doctor will give you
the results of your biopsy when results are
known. These test results are ready in a short
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time and will be used to make decisions
about your care.
Will I benefit from the research using my
tissue?
There will be no direct benefit to you,
financially or otherwise. However, it is
hoped that the results of research on your
tissue and tissues from other patients will
provide information that will help other
patients in the future. Your tissue will be
helpful whether you have cancer or not.
Why do you need information from my
health records?
In order to do research with your tissue,
researchers may need to know some things
about you. (For example: Are you male or
female? What is your race or ethnic group?
How old are you? Have you ever smoked?)
This helps researchers answer questions
about diseases. The information that will be
given to the researcher includes your age,
sex, race, diagnosis, treatments, and possibly
some family history. This information is
collected by your hospital from your health
record and sent to the [INSERT
ORGANIZATION NAME] but without your
name or other identifying information. If
more information is needed, the [INSERT
ORGANIZATION NAME] may send it to the
researcher.
Will my name be attached to the records that
are given to the researcher?
No. Your name, address, phone number,
and anything else that could identify you
will be removed before the other information
goes to the researcher.
How could the records be used in ways that
might be harmful to me?
Sometimes, health records have been used
against patients and their families. For
example, insurance companies may deny a
patient insurance or employers may not hire
someone with a certain illness (such as AIDS
or cancer). The results of genetic research
may apply not only to you but also to your
family members. For diseases caused by gene
changes, the information in one person’s
health record could be used against family
members.
How am I protected?
The [INSERT ORGANIZATION NAME] is
in charge of making sure that information
about you is kept private. The [INSERT
ORGANIZATION NAME] will take careful
steps to prevent misuse of records. Your
name, address, phone number and other
identifying information will be taken off
anything associated with your tissue before it
is given to the researcher. This would make
it very difficult for any research results to be
linked to you or your family. Also, people
outside the research process will not have
access to results about any one person, which
will help protect your privacy.
Making sure that your identity does not
become known will minimize the chance that
you will experience any psychological or
social harm. Therefore, we will take every
precaution to safeguard your identity. As
soon it is collected, your tissue and your
clinical information will be assigned a code
number. That code number will be the only
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information attached to your samples and
clinical information. All other widely used
identifying information, such as your name,
address, phone number, and Social Security
number, will be removed. The master list,
which will link your name and the code
number, will be kept under lock and key and
in a computer with electronic safeguards.
Only authorized people who have agreed in
writing to protect your identity will have
access to your linked information. Therefore,
the researchers and others working with your
samples and clinical information will not
know your identity.
Your privacy is very important to us.
However, in spite of these safety measures,
we cannot guarantee that your identity will
never become known. Due to scientific
advances or human errors, your identity
could become known. Since your DNA
information is unique to you, in the future it
may become possible for someone to identify
you. This would require someone to take
another tissue sample from you, analyze the
DNA, and compare it with data resulting
from this research project. Currently, this risk
is very slight.
If your identity were ever determined, this
might cause you and your family some
distress. In addition, if it became known that
you have disease-causing DNA changes, there
is a very small risk that you might have a
harder time getting or keeping a job or health
insurance. Some laws exist that attempt to
protect people from such job and insurance
discrimination. However, these laws may not
fully protect people from discrimination.
Since you share genetic characteristics
with your children, parents, brothers, sisters,
and other family members, it is possible that
some of these risks may apply to them as
well. However, their risks are likely to be
even lower than yours, since it will be even
more difficult to identify them than to
identify you.
Appendix 2—Material Transfer
Agreement for Human Biospecimens
Provider Organization (‘‘Provider’’): llll
Recipient Organization (‘‘Recipient’’): lll
1(a). The material to be transferred
(‘‘MATERIAL’’) (Name or description of
human Biospecimen(s) or Collection,
Method of Preservation, Organ Source,
etc.):
lllllllllllllllllllll
lllllllllllllllllllll
1(b). Designate the Private Identifiable
Information status of the MATERIAL
(Please see Annex A for definitions) (check
one below):
llUnidentified specimens
llUnidentified or ‘‘anonymous’’ samples
llUnidentifiable
llCoded specimens
llCoded samples
2. The Recipient will use the MATERIAL
(check one only):
llAs a biorepository that will distribute the
MATERIAL to the research community
on behalf of the Provider under a
separate Material Transfer Agreement.
llTo conduct an independent research
project (Describe the ‘‘RESEARCH
PROJECT’’ below):
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lllllllllllllllllllll
lllllllllllllllllllll
jlentini on PROD1PC65 with NOTICES
Recipient Serving as a Biorepository
3. If the MATERIAL is being provided by the
Provider under this Agreement for the
purpose of the Recipient distributing the
MATERIAL to the research community, the
Provider hereby grants the Recipient
explicit permission to further distribute the
MATERIAL to the research community as
a biorepository. Provider Approval (initial
here) lll
4. If the Recipient is designated as a
biorepository in Article 2, the Recipient is
the custodian of the MATERIAL and
therefore does not by virtue of this
Agreement acquire any intellectual
property rights in the MATERIAL, nor in
any research conducted by third-parties
using the MATERIAL.
5. The MATERIAL will be distributed by
Recipient in compliance with all
applicable statutes and regulations.
Recipient Conducting an Independent
Research Project
6. If the MATERIAL is being provided by the
Provider under this Agreement for the
purpose of the Recipient conducting an
independent research project, the
MATERIAL will be used in compliance
with all applicable statutes and
regulations. The MATERIAL was collected
and is provided in accordance with
appropriate Federal and local laws,
Assurances, and Institutional Review
Board approvals related to Human Subjects
Research. Recipient is responsible for
obtaining any necessary Human Subjects
research approvals or exemptions required
to use the MATERIAL for the RESEARCH
PROJECT.
7. The Recipient will not further distribute
the MATERIAL to others who are not
under the Recipient Scientist’s direct
supervision without written consent from
the Provider. The Recipient shall refer any
request for the MATERIAL to the Provider.
8. The Recipient will in no way attempt to
identify or contact the person(s) associated
with the biospecimen(s) that make up the
MATERIAL. Furthermore, Recipient will
not attempt to obtain or otherwise acquire
any private identifiable information
associated with the biospecimen(s) that
make up the MATERIAL under this
Agreement. The MATERIAL will be coded
or otherwise deidentified. Any widely used
identifying information will have been
removed. However, it is acknowledged
that, due to scientific advances such as
DNA analyses or human errors, there is a
small risk that the identity of the person
who was the source of the MATERIAL
could become known.
9. It is intended that Recipient publish the
results of the RESEARCH PROJECT and
make the associated data available to the
research community in a manner
consistent with the NIH data sharing
policies found at https://grants1.nih.gov/
grants/policy/data_sharing/index.htm. The
Recipient agrees to acknowledge the source
of the MATERIAL in any publications or
disclosures reporting use of it.
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10. Recipient retains ownership of
intellectual property made by its
employees using the MATERIAL as part of
the RESEARCH PROJECT to the extent
permitted by law or contractual
agreements.
All Parties Agree
11. THIS MATERIAL IS NOT FOR USE IN
HUMAN SUBJECTS.
12. The above MATERIAL is being
distributed as a service to the research
community. It is acknowledged that the
MATERIAL is a nonrenewable research
resource and that further distribution for
research purposes may be determined by
scientific merit of the proposed research
project. Accordingly, the MATERIAL will
be made available to other scientists under
a separate Material Transfer Agreement for
scientifically approved projects and to the
extent supplies are available.
13. Any MATERIAL delivered pursuant to
this Agreement is understood to be
experimental in nature and may have
hazardous properties. THE Provider
MAKES NO REPRESENTATIONS AND
EXTENDS NO WARRANTIES OF ANY
KIND, EITHER EXPRESSED OR IMPLIED.
THERE ARE NO EXPRESS OR IMPLIED
WARRANTIES OF MERCHANTABILITY
OR FITNESS FOR A PARTICULAR
PURPOSE, OR THAT THE USE OF THE
MATERIAL WILL NOT INFRINGE ANY
PATENT, COPYRIGHT, TRADEMARK, OR
OTHER PROPRIETARY RIGHTS. Unless
prohibited by law, the Recipient assumes
all liability for claims for damages against
it by third parties that may arise from its
use, storage, or disposal of the MATERIAL,
except that, to the extent permitted by law,
the Provider shall be liable to the Recipient
when the damage is caused by the gross
negligence or willful misconduct of the
Provider.
Signatures for Provider
Provider Scientist: llllllllllll
lllllllllllllllllllll
Provider Organization: llllllllll
lllllllllllllllllllll
Address: llllllllllllllll
lllllllllllllllllllll
lllllllllllllllllllll
Name of Authorized Official: lllllll
lllllllllllllllllllll
Title of Authorized Official: lllllll
lllllllllllllllllllll
lllllllllllllllllllll
Signature of Authorized Official
Date: llllllllllllllllll
Certification of Provider Authorized Official:
This Agreementlhas/lhas not been
modified. If modified, the modifications
are attached.
Signatures for Recipient
Recipient Scientist: lllllllllll
lllllllllllllllllllll
Recipient Organization: lllllllll
lllllllllllllllllllll
Address: llllllllllllllll
lllllllllllllllllllll
Name of Authorized Official: lllllll
lllllllllllllllllllll
lllllllllllllllllllll
Title of Authorized Official: lllllll
lllllllllllllllllllll
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lllllllllllllllllllll
Signature of Authorized Official
Date: llllllllllllllllll
lllllllllllllllllllll
Certification of Recipient Scientist: I have
read and understood the conditions
outlined in this Agreement, and I agree to
abide by them in the receipt and use of the
MATERIAL.
lllllllllllllllllllll
Scientist Receiving Material
Date: llllllllllllllllll
lllllllllllllllllllll
Annex A
Definitions (applicable to Appendix 2)
Coded samples: Sometimes termed
‘‘linked’’ or ‘‘identifiable,’’ these samples are
supplied by repositories to investigators from
identified specimens with a code rather than
with personally identifying information, such
as a name or Social Security number.
Coded specimens: Sometimes termed
‘‘linked’’ or ‘‘identifiable,’’ these specimens
are supplied by repositories to investigators
with a code rather than with personally
identifying information, such as a name or
Social Security number.
Unidentifiable: Tissue for which
identifiable information was not collected or,
if collected, was not maintained and cannot
be retrieved by the repository.
Unidentified or ‘‘anonymous’’ samples:
Samples supplied by repositories to
investigators from a collection of
unidentified human biological specimens
and can never be traced to an individual.
Unlinked or ‘‘anonymized’’ samples lack
identifiers or codes that can link a particular
sample to an identified specimen or a
particular human being but may have been
derived from an identified sample in the
repository.
Unidentified specimens: For these
specimens, identifiable personal information
was not collected or, if collected, was not
maintained and cannot be retrieved by the
repository.
IV. Implementation
A. Date of Implementation
The adoption of these guidelines is
voluntary. However, the NCI may consider
making these guidelines terms and
conditions of awards.
B. Roles and Responsibilities
These guidelines will eventually apply to
all applicants of NCI-supported biomedical
research involving biorepositories of human
biospecimens. Certain individuals and
groups have special roles and responsibilities
with regard to the adoption and
implementation of these guidelines.
The NCI staff will provide educational
opportunities for the extramural and
intramural community concerning these
guidelines; monitor its implementation
during the development, review, award and
conduct of research; and manage the NCI
research portfolio to address these
guidelines.
1. Principal Investigators
The principal investigator and the
applicant institution should address the
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inclusion of the guidelines in each
application and proposal. Applicants should
provide a statement of compliance in each
area relevant to their studies where such
information is not already provided.
V. Abbreviation Definitions Used in these
Guidelines
Abbreviation
Definition
caBIG ..........
cancer Biomedical
Informatics Grid
cancer Data Standards Repository
cancer Text Information Extraction System
component of the NCI cancer
Biomedical Informatics
Grid
Centers for Disease Control
and Prevention
common data elements
Code of Federal Regulations
Cooperative Human Tissue
Network
Clinical Laboratory Improvement Amendments
Clinical and Laboratory
Standards Institute (formerly NCCLS, National
Committee for Clinical Laboratory Standards)
deoxyribonucleic acid
U.S. Food and Drug Administration
General Services Administration
U.S. Department of Health
and Human Services
Health Insurance Portability
and Accountability Act of
1996
human immunodeficiency
virus
International Air Transport
Association
International Civil Aviation
Organization
institutional review board
International Society for Biological and Environmental
Repositories
Material Transfer Agreement
National Biospecimen Network
National Cancer Advisory
Board
National Cancer Institute
Office of Biorepositories and
Biospecimen Research (at
the NCI)
Office for Human Research
Protections
Occupational Safety and
Health Administration
packaging instruction
quality assurance
quality control
quality management system
Simple Letter of Agreement
standard operating procedures
Uniform Biological Material
Transfer Agreement
2. Institutional Review Boards (IRBs)
As the IRBs implement the guidelines, the
use of the ‘‘NCI Sample Consent Form for
Use of Tissue for Research,’’ adapted to
conform with applicable state law and local
policy, and the ‘‘Material Transfer Agreement
for Human Biospecimens,’’ are strongly
encouraged in future applications.
caDSR .........
caTIES ........
caTISSUE ...
CDC ............
3. Peer Review Groups
In conducting peer review for scientific
and technical merit, appropriately
constituted initial review groups (including
study sections), technical evaluation groups,
and intramural review panels will evaluate
the proposed plan for the inclusion of the
guidelines. Where the guidelines have not
been adopted or implemented, the peer
review should evaluate the impact on the
quality of the biospecimens collected, stored,
and or analyzed.
4. National Cancer Advisory Board (NCAB)
The NCAB has approved these guidelines
in their draft form, in the interest of ensuring
sufficient biospecimens of documented
quality to support NCI-sponsored research
and the findings that guide the scientific
policy of the NCI. Modifications to these
guidelines will be considered in light of the
overall NCI policy and available scientific
data.
5. Extramural Program Staff
NCI Extramural Program staffs are familiar
with the scientific merits and capabilities of
the sponsored researchers. Staff
understanding of the guidelines and their
rationale will be essential in assisting in a
balanced and rational implementation by
sponsored researchers.
6. NCI Director
NCI-sponsored researchers are located and
operate within a wide variety of facilities,
including pathology laboratories, surgical
practices, comprehensive cancer treatment
centers, and clinical or basic research
laboratories. The guidelines as published by
the NCI are not intended to substitute,
supersede, or otherwise replace existing
requirements but to be a complement to these
requirements and to be applied in the
absence of guidelines.
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8. Applicability to Foreign Research
Involving Human Subjects
For foreign awards, the NCI guidelines for
research conducted outside the U.S. are the
same as those for research conducted in the
United States. Where local laws or
regulations differ, investigators should
provide the NCI with a rationale for alternate
approaches.
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CLSI ............
DNA ...........
FDA ............
GSA ............
HHS ............
HIPAA ........
HIV .............
IATA ..........
ICAO ..........
IRB ..............
ISBER .........
MTA ...........
NBN ............
NCI .............
OBBR ..........
7. Educational Outreach by NCI To Inform
the Professional Community
18:56 Apr 27, 2006
CLIA ...........
NCAB .........
The NCI Director may recommend
modifications to the guidelines based on
subsequent information.
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CDEs ...........
CFR .............
CHTN .........
OHRP .........
OSHA .........
PI ................
QA ..............
QC ..............
QMS ...........
SLA ............
SOPs ...........
UBMTA ......
NCI Glossary of Terms for Purposes of These
Guidelines
Accident. Any occurrence that deviates
from SOPs or applicable government laws
and regulations during specimen retrieval,
processing, labeling, storage, or distribution
that may affect subsequent use of those
specimens (ISBER 2005).
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Adverse outcome. An undesirable effect or
untoward complication consequent to or
reasonably related to specimen integrity
(ISBER 2005).
Aliquot. A portion of a specimen that has
been divided into separate, smaller parts,
usually liquid, which are typically stored in
separate containers as individual samples.
The term aliquot may also be used as a noun
to denote a single sample (ISBER 2005).
Annotation. Explanatory or extra
information associated with a particular
biospecimen. Annotations may be added by
either the pathologist or the resource
collector.
Audit. A documented review of
procedures, records, personnel functions,
equipment materials, facilities, and/or
vendors to evaluate adherence to written
SOPs or government laws and regulations
(ISBER 2005).
Bioinformatics. Research, development, or
application of computational tools and
approaches for expanding the use of
biological, medical, behavioral, or health
data, including those to acquire, store,
organize, archive, analyze, or visualize such
data (as defined by the NIH Biomedical
Information Science and Technology
Initiative Consortium (https://
www.bisti.nih.gov/CompuBioDef.pdf)
(Eiseman et al. 2003)).
Biorepository. A place, room, or container
where biospecimens are stored.
Biorepositories vary considerably, ranging
from formal organizations to informal
collections of materials in an individual
researcher’s freezer.
Biorepository informatics system. The
software, hardware, written documents,
support, and training that are necessary to
annotate, track, and distribute biospecimens
within a biorepository or biorepositories.
Biospecimen or specimen. A quantity of
tissue, blood, urine, or other biologically
derived material used for diagnosis and
analysis. A single biopsy may generate
several specimens, including multiple
paraffin blocks or frozen specimens. A
specimen can include everything from
subcellular structures (DNA) to cells, tissue
(bone, muscle, connective tissue, and skin),
organs (e.g., liver, bladder, heart, kidney),
blood, gametes (sperm and ova), embryos,
fetal tissue, and waste (urine, feces, sweat,
hair and nail clippings, shed epithelial cells,
and placenta).
caBIG (cancer Biomedical Informatics
Grid). A voluntary network or grid
connecting individuals and institutions to
enable the sharing of data and tools, creating
a World Wide Web of cancer research. The
goal of this project is to speed the delivery
of innovative approaches for the prevention
and treatment of cancer. caBIG is being
developed under the leadership of the NCI
Center for Bioinformatics. Nearly 500 people
from approximately 50 NCI-designated
Cancer Centers and other organizations are
working collaboratively on over 70 projects
in a 3-year pilot project. For more
information on caBIG, visit https://
cabig.nci.nih.gov.
caDSR (cancer Data Standards Repository).
The standards repository that hosts CDEs
developed by various NCI-sponsored
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organizations. caDSR components are
instrumental in the collection of metadata
associated with clinical trials. caDSR tools
facilitate the search and retrieval of CDEs and
caDSR is the single, authoritative source of
common data.
caTIES (cancer Text Information
Extraction System). A project that will focus
on two important challenges of biomedical
informatics; namely, information extraction
from free text and access to tissue.
Specifically, caTIES has three primary goals:
(1) Extract coded information from free-text
surgical pathology reports using controlled
terminologies to populate caBIG-compliant
data structures, (2) provide researchers with
the ability to query, browse, and acquire
annotated tissue data and physical material
across a network of federated sources, and (3)
pioneer research for distributed text
information extraction within the context of
caBIG. caTIES modules will be developed as
generalized components available on the
caBIG, in order to facilitate reuse by other
caBIG projects requiring tissue information
extraction.
caTISSUE. A modular, open-source
specimen inventory and tracking system that
will encompass a core database module for
those Centers in need of new solutions, as
well as application programming interfaces
(APIs), software development toolkits (SDKs),
and additional annotation modules for those
centers with legacy systems that wish to link
into the virtual tissue repositories and query
across Cancer Centers. The caBIG Tissue
Banks and Pathology Tools Workspace
(TBPTW) is responsible for the release of
caTISSUE.
Clinical data. Data pertaining to or
founded on actual observation and treatment
of patients.
Clinical trial research. Research studies
that evaluate new interventions, drugs, or
medical therapies given to human research
participants in strictly scientifically
controlled settings. The purpose of such
trials is to determine whether one or more
screening, prevention, and/or treatment
options are safe, effective, and better than
current standard care.
Code of Federal Regulations (CFR). The
Code of Federal Regulations is a publication
that codifies the general and permanent rules
published in the Federal Register by the
executive departments and agencies of the
Federal Government. It is published by the
Office of the Federal Register, National
Archives and Records Administration,
Washington, DC (ISBER 2003).
Coded samples. Sometimes termed
‘‘linked’’ or ‘‘identifiable,’’ these samples are
supplied by biorepositories to investigators
from identified specimens with a code rather
than with personally identifying information,
such as a name or Social Security number.
Collection. See Retrieval.
Common Data Elements (CDEs). CDEs
standardize metadata between a series of
software systems. Such standardization
ensures that the same meaning of words is
used and that data model and application
components are reusable. In addition, it eases
the integration of systems.
Confidentiality. A principle emergent from
a relationship in which something about an
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individual, information, or material has been
shared (with some degree of loss of privacy)
in confidence (NBN Blueprint 2003).
Container. Enclosure for one unit or units
of specimen(s) (ISBER 2005).
Cooperative Human Tissue Network
(CHTN). A six-division, decentralized, NCIfunded, infrastructure that provides
biomedical researchers with access to human
tissue. Established in response to a Request
for Applications in 1987, the CHTN has
provided more than 500,000 high-quality
tissue biospecimens from a variety of organs
to more than 1,000 investigators for the
conduct of basic and developmental cancer
research. Eighty percent of these researchers
are from academic or government
institutions; only 20 percent of users are from
industry.
Cryoprotectant. An additive that serves to
minimize osmotic imbalances that occur with
the progression of freezing fronts through a
substance and is intended to limit the
amount of cell damage due to cell shrinkage
and intracellular ice formation (ISBER 2005).
Custodianship. Relates to the caretaking
responsibility for the specimen collection,
including management and documentation,
as well as rights to determine the conditions
under which the specimens are accessed and
used.
Data. Values derived from scientific
experiments or diagnostic procedures
organized especially for scientific analysis in
a numerical form suitable for processing by
computer (NBN Blueprint 2003).
Data Sharing Policy (NIH Data Sharing
Policy). ‘‘NIH believes that data sharing is
essential for expedited translation of research
results into knowledge, products, and
procedures to improve human health. NIH
endorses the sharing of final research data to
serve these and other important scientific
goals and expects and supports the timely
release and sharing of final research data
from NIH-supported studies for use by other
researchers. ‘‘Timely release and sharing’’ is
defined as no later than the acceptance for
publication of the main findings from the
final data set. Effective with the October 1,
2003 receipt date, investigators submitting an
NIH application seeking $500,000 or more in
direct costs in any single budget period are
expected to include a plan for data sharing
or state why data sharing is not possible’’
(Grants Policy Statement, 12/03). The NIH
Data Sharing Policy is not itself a
requirement to share data but rather to have
a plan to address sharing of data or to state
why sharing is not possible. (NIH Grants
Policy Statement Web site https://
grants2.nih.gov/grants/policy/data_sharing/
data_sharing_guidance.htm).
Deidentified protected health information.
Health information that does not identify an
individual and with respect to which there
is no reasonable basis to believe that the
information can be used to identify an
individual. Such information is not
individually identifiable health information
(45 CFR 164.514(a)-(c)) (Eiseman et al. 2003).
Demographic data. Data relating to
statistical characteristics of human
populations (e.g., age, gender).
Deviation. An intentional or unintentional
event that is a departure from a procedure or
a normal practice (ISBER 2005).
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Disposition. Final destination of specimens
(ISBER 2005).
Distribution. A process that includes
receipt of request for specimens, selection of
appropriate specimens, and final inspection,
in conjunction with subsequent shipment
and delivery of specimens to another
biorepository, specimen collection center, or
laboratory (ISBER 2005).
Dry ice. Solid-phase carbon dioxide.
Genomics. The study of genes and their
function; the study of all or a substantial
portion of the genes of an organism as a
dynamic system, over time, to determine how
those genes interact and influence biological
pathways, networks, and physiology.
Honest broker. A neutral intermediary
between the individual whose tissue and
data are being studied and the researcher.
The honest broker collects and collates
pertinent information regarding the tissue
source, replaces identifiers with a code, and
releases only coded information to the
researcher (Eiseman et al. 2003).
Human subject. A living individual about
whom an investigator, either professional or
student, conducting research obtains (1) Data
through intervention or interaction with the
individual or (2) identifiable private
information (45 CFR 46.102(f)). A Human
subject may also be a patient, but is not
necessarily one.
Indemnification. A legal term of art
meaning to secure a person or entity against
hurt, loss, injury, or other damages suffered.
Informatics. The use of science, computer
science, information technologies, and other
technologies to provide data, information,
and knowledge to an individual or an
organization. The term is synonymous with
information science. See also biorepository
informatics system.
Informatics system. Refers to the software,
hardware, written documents, support, and
training necessary to annotate, track, and
distribute biospecimens within a
biorepository or biorepositories.
Informed consent. An educational process
between the investigator and the prospective
subject (or the subject’s legally authorized
representative) as a means to ensure respect
for persons; mutual understanding of
research procedures, risks, rights, and
responsibilities; and continuous voluntary
participation (NBN Blueprint 2003).
Institutional review board. A specially
constituted review body established or
designated by an entity to protect the welfare
of human subjects recruited to participate in
biomedical or behavioral research.
Intellectual property. Creative ideas and
expressions of the human mind that have
commercial value and receive the legal
protection of a property right. The major legal
mechanisms for protecting intellectual
property rights are copyrights, patents, and
trademarks. Another form of protection for
data sets available in Europe and most of the
industrialized world, except the US, is called
‘‘sui generis rights in data.’’ Intellectual
property rights enable owners to deny some
parties or persons from access and use of the
property and thus to protect it from
unauthorized use.
Interoperability. The ability of two or more
systems or components to exchange
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information and to use the information that
has been exchanged.
Invention. A new and useful process,
machine, manufacture or composition of
matter, or any new and useful improvement,
finding, or product that advances the state of
the art or practice and may be patentable.
Label. Any written, printed, or graphic
material on or affixed to a specimen
container or package (ISBER 2005).
Liquid nitrogen dry shipper. A container
used for sending samples in the vapor phase
of liquid nitrogen (ISBER 2005).
Longitudinal data. Clinical data acquired
over the course of time.
Material Transfer Agreement (MTA). A
binding legal agreement between the
provider of research materials and the
recipient of the materials that sets forth
conditions of transfer and use, protects
proprietary interests, and restricts
distribution of the material. An important
aspect of the MTA is that it normally
removes liability on the part of the provider
that might arise from recipient’s use of the
research material.
Package. A labeled carton, receptacle, or
wrapper containing one or more containers
and accompanying labeling material (ISBER
2005).
Paraffin-embedded. Tissue that is formalin
fixed and then embedded in wax. (Note:
Other alternative fixation methods may be
used to fix the tissue.)
Patent. A property right granted by the
Federal Government or a Sovereign State to
an inventor. In order to be patentable, an
invention must contain an idea that serves
some utility, is novel, and is patentable as
defined under U.S. Patent Law.
Patient. A person undergoing medical
treatment.
Preservation. Use of chemical agents,
alterations in environmental conditions, or
other means during processing to prevent or
retard biological or physical deterioration of
a specimen (ISBER 2005).
Prevalence. Number of cases of a disease,
infected persons, or persons with some other
attribute present during a particular interval
of time.
Privacy. The state or condition of limited
access to an individual and/or to information
about that individual.
Procedure. A series of steps designed to
result in a specific outcome when followed
in order (ISBER 2005).
Process validation studies. The process of
demonstrating that a specific procedure will
consistently produce expected results within
predetermined specifications (ISBER 2005).
Processing. Any procedure employed after
specimen collection but prior to its
distribution, including preparation, testing,
and releasing the specimen to inventory and
labeling (ISBER 2005).
Prospective. When an intervention of
interest is performed and all relevant
information and observations on its effects
are gathered after entry into the study. By
contrast, ‘‘retrospective’’ studies focus on
information that has already been collected.
Protected health information (PHI). Any
health information that is collected by a
covered entity and is individually
identifiable (NBN Blueprint 2003). Also, a
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subset of individually identifiable
information that can be disclosed only under
the following conditions: (1) The use or
disclosure is sought solely to review PHI as
necessary to prepare the research protocol or
other similar preparatory purposes, (2) no
PHI is removed from the covered entity
during review, and (3) the PHI that the
researcher seeks to use or access is necessary
for the research purposes. PHI can be
deidentified by removing all 18 identifiers
listed in section 164.514(b)(2) of the Federal
regulations or by having a qualified
statistician perform an analysis stating that
the risk of the information being used is
small (ISBER 2005).
Proteomics. The study of the full set of
proteins encoded by a genome; the study of
the identities, quantities, structures, and
biochemical and cellular functions of all
proteins in an organism, organ, or organelle
and how these properties vary in space, time,
and physiological state.
Quality assurance (QA). An integrated
system of management activities involving
planning, implementation, documentation,
assessment, and improvement to ensure that
a process or item is of the type and quality
needed for the project. Same as quality
management system (QMS) (ISBER 2005).
Quality control (QC). Specific tests defined
by the QA or QMS Program to be performed
to monitor procurement, processing,
preservation and storage, specimen quality,
and test accuracy. These may include but are
not limited to performance evaluations,
testing, and controls used to determine
accuracy and reliability of the biorepository’s
equipment and operational procedures as
well as monitoring of the supplies, reagents,
equipment, and facilities (ISBER 2005).
Quality management system (QMS). Same
as Quality assurance (QA) (ISBER 2005).
Quality. Conformance of a specimen or
process with preestablished specifications or
standards (ISBER 2005).
Reach-through provisions. Material transfer
agreements do not usually require financial
payments at the time of the transfer, but
many allow the provider to either own, or
license exclusively, or obtain payments upon
the sale of, developments that the recipient
makes with the provider’s materials. These
are loosely termed ‘‘reach-through’’
provisions and are considered by many
providers to be desirable because they allow
the provider to obtain rights in subject matter
to which the provider would not otherwise
have rights through its ownership or patent
coverage of the material alone. Reach-through
provisions are considered undesirable by
many recipients because they burden all the
developments created after the use of the
material and because they are seen as
providing an unfairly high level of
compensation to the provider for use of the
material.
Repository. See Biorepository, above.
Research. Systematic investigation,
including research development, testing, and
evaluation, designed to develop or contribute
to generalizable knowledge.
Retrieval. The removal, acquisition,
recovery, harvesting, or collection of
specimens (ISBER 2005).
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Safety. Processes, procedures, and
technologies to ensure freedom from danger
or harm.
Sample. Portions of specimens distributed
to researchers (Eiseman et al. 2003).
Semantics. Refers to the ways that
information in a data file should be
interpreted by others.
Shipping manifest. A written description
of the contents of the shipped package
(ISBER 2005).
Simple Letter of Agreement. A short form
of a standard material transfer agreement.
Specimen. A portion of tissue, blood,
urine, or other material used for diagnosis
and analysis. A single biopsy may generate
several specimens, including a number of
slides, paraffin blocks, and/or frozen
specimens. See Biospecimen.
Standard operating procedures (SOPs)
manual. A group of standard operating
procedures detailing the specific policies of
a biorepository and the procedures used by
the staff/personnel (ISBER 2005).
Storage. Maintenance of specimens for
future use.
Tissue. Refers generally to a biologic
collection of cells, and the extracellular
matrix and/or intercellular substances
surrounding them. Tissue is most often
referred to in the context of solid tissue, as
originating from a solid organ; however,
tissue can also be defined broadly to include
collections of cells and intercellular
substances from bodily fluids such as blood.
Tissue Banks and Pathology Tools
Workspace (TBPTW). As one of three caBIG
pilot domain workspaces, the goal of the
TBPTW is to develop a set of tools to
inventory, track, mine, and visualize tissue
samples and related information from a
geographically dispersed biorepository. This
Workspace provides an opportunity to bind
Cancer Center systems together into a unified
resource through a shared informatics
infrastructure. Cancer Centers with
experience in successfully developing tools
in this domain are acting as developers,
while other Centers are included as testing
and validation sites. Cancer Centers that have
expressed an interest in sharing information
regarding specimen repositories and data sets
are participating as early test sites, providing
an opportunity to demonstrate how the tools
perform in actual practice.
Translational research. The process of
applying ideas, insights, and discoveries
generated through basic scientific inquiry to
the prevention or treatment of human
disease.
Uniform Biological Material Transfer
Agreement (UBMTA). A standardized
material transfer agreement with generic
language for biological material transfers. It
was created to increase the efficiency of the
process by decreasing delays in research
progress during negotiation of material
transfer agreements, while providing uniform
protection for biological materials. The
National Institutes of Health published the
Uniform Biological Material Transfer
Agreement in 1995 and recommends its use
by all public and nonprofit research
institutions. The Association of University
Technology Managers (AUTM) administers
the process of becoming a signatory to the
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Master Agreement. See https://www.autm.net/
aboutTT/aboutTT_umbta.cfm.
Use case. A description of the process used
to perform a particular modeling task on a
particular model. It is a user-centered
description of the activities performed by a
user to accomplish a particular goal. The
collected use cases specify all the ways the
system can be used.
Dated: April 10, 2006.
John Niederhuber,
Deputy Director, Translational and Clinical
Sciences.
[FR Doc. 06–3997 Filed 4–27–06; 8:45 am]
BILLING CODE 4140–01–P
DEPARTMENT OF HOMELAND
SECURITY
Coast Guard
[USCG–2006–24540]
Privacy Act of 1974; System of
Records
United States Coast Guard,
Department of Homeland Security.
ACTION: Notice of Privacy Act system of
records.
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AGENCY:
SUMMARY: The United States Coast
Guard in the Department of Homeland
Security is creating a new system of
records for the secure collection of
information from and about individuals
and entities subject to the requirements
of the Maritime Transportation Security
Act of 2002.
DATES: The new system of records will
be effective May 30, 2006, unless
comments are received that result in a
contrary determination.
ADDRESSES: You may submit comments
identified by docket number USCG–
2006–24540 to the Docket Management
Facility at the U.S. Department of
Transportation. To avoid duplication,
please use only one of the following
methods:
(1) Web site: https://dms.dot.gov.
(2) Mail: Docket Management Facility,
U.S. Department of Transportation,
Room Plaza 401, 400 Seventh Street,
SW., Washington, DC 20590–0001.
(3) Fax: 202–493–2251 (not toll-free).
(4) Delivery: Room PL–401 on the
Plaza level of the Nassif Building, 400
Seventh Street, SW., Washington, DC,
between 9 a.m. and 5 p.m., Monday
through Friday, except Federal holidays.
The telephone number is 202–366–
9329.
(5) Federal eRulemaking Portal:
https://www.regulations.gov.
FOR FURTHER INFORMATION CONTACT: Mr.
Donald Taylor, U.S. Coast Guard
Privacy Officer. Address: Commandant
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(CG–611), U.S. Coast Guard, 2100 2nd
Street, SW., Washington, DC 20593–
0001. Telephone number is 202–475–
3519.
SUPPLEMENTARY INFORMATION: The
Maritime Transportation Security Act
(MTSA) of 2002 establishes a
comprehensive national system of
transportation security enhancements to
protect America’s maritime community
against the threat of terrorism without
adversely affecting the flow of
commerce through United States ports.
The United States Coast Guard (USCG)
is the lead Federal agency for maritime
homeland security and has significant
enforcement responsibilities under the
MTSA. Among other responsibilities
under the MTSA, the Coast Guard
requires that maritime security plans be
developed for ports, vessels and
facilities, and that those with access to
maritime facilities have credentials
demonstrating their eligibility for such
access.
Homeport, a new system of records
under the Privacy Act of 1974, will
facilitate implementation of these
requirements. Representatives of the
maritime industry, members of Area
Maritime Security Committees, which
are required under the MTSA, other
entities regulated by the MTSA, and
USCG and other officials will be able to
register and use Homeport for secure
information dissemination and
collaboration. In this aspect regulated
entities will be able to use Homeport for
electronic submission and approval of
required security plans and the Coast
Guard will be able to verify compliance
with security requirements. Homeport
will also be used to collect information
from and about individuals for whom
background screening will be conducted
for purposes of establishing USCGapproved identification credentials for
access to maritime facilities, and to
inform owners and operators of those
maritime facilities of the names of
persons who have passed the
background screening. Homeport also
has the capability to be used as a
communications tool in the event of a
natural disaster or other emergency to
facilitate secure communications.
The Privacy Act embodies fair
information principles in a statutory
framework governing the means by
which the United States Government
collects, maintains, uses, and
disseminates personally identifiable
information. The Privacy Act applies to
information that is maintained in a
‘‘system of records.’’ A ‘‘system of
records’’ is a group of any records under
the control of an agency from which
information is retrieved by the name of
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the individual or by some identifying
number, symbol, or other identifying
particular assigned to the individual.
Information in Homeport about
registered users and those subject to
screening for purposes of credentialing
will be maintained in a system of
records.
The Privacy Act requires each agency
to published in the Federal Register a
description denoting the type and
character of each system of records that
the agency maintains, and the routine
uses that are contained in each system
to make agency recordkeeping practices
transparent, to notify individuals
regarding the uses to which personally
identifiable information is put, and to
assist the individual to more easily find
such files within the agency.
Individuals may request their own
records that are maintained in a system
of records in the possession or under the
control of DHS by complying with DHS
Privacy Act regulations (6 CFR 5.21).
USCG is hereby publishing the
description of the Homeport system of
records. In accordance with 5 U.S.C.
552a(r), a report of this new system of
records has been provided to the Office
of Management and Budget (OMB) and
to the Congress.
DHS/CG 060
SYSTEM NAME:
Homeport
SECURITY CLASSIFICATION:
Unclassified, Sensitive.
SYSTEM LOCATION:
The system is located at the United
States Coast Guard Operations Systems
Center, 600 Coast Guard Drive,
Kearneysville, WV 25430–3000.
CATEGORIES OF INDIVIDUALS COVERED BY THE
SYSTEM OF RECORDS:
This system of records covers
individuals including, but not limited
to, representatives of the maritime
industry, members of Area Maritime
Security Committees, entities regulated
under the maritime Transportation
Security Act, and government officials.
These persons may complete on-line
forms and/or request an account to
provide the information requested or
required by the Coast Guard, access/
view sensitive but unclassified
information, and participate in
collaboration communities. This system
will also cover individuals for whom
background screening will be conducted
for the purpose of establishing Coast
Guard-approved identification
credentials for access to certain
regulated facilities. These individuals
include, but are not limited to, facility
E:\FR\FM\28APN1.SGM
28APN1
Agencies
[Federal Register Volume 71, Number 82 (Friday, April 28, 2006)]
[Notices]
[Pages 25184-25203]
From the Federal Register Online via the Government Printing Office [www.gpo.gov]
[FR Doc No: 06-3997]
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DEPARTMENT OF HEALTH AND HUMAN SERVICES
National Institutes of Health
First-Generation Guidelines for NCI-Supported Biorepositories
AGENCY: National Institutes of Health (NIH), National Cancer Institute
(NCI).
ACTION: Notice.
-----------------------------------------------------------------------
SUMMARY: The NCI is establishing common guidelines for the collection
of biospecimens and their accompanying data by NCI-sponsored
biorepositories. These guidelines are intended to standardize and
enhance the quality of research material and data used in cancer
research.
DATES: Effective Date: May 30, 2006.
ADDRESSES: These guidelines are open for public comment for a period of
30 days. After the comment period has closed, any comments received
will be considered in a timely manner by the NCI Office of
Biorepositories and Biospecimen Research and appropriate changes will
be made and the final guidelines will be published and voluntarily in
effect. After the effective date of publication of the final
guidelines, written comments will continue to be accepted for the first
year of implementation and can be sent to: First-Generation Guidelines,
Office of Biorepositories and Biospecimen Research, Office of the
Deputy Director for Advanced Technologies and Strategic Partnerships,
National Cancer Institute, National Institutes of Health, 31 Center
Drive, Room 10A03, Bethesda, MD 20892. Comments submitted via e-mail
should use biospecimens@mail.nih.gov and enter ``First-Generation
Guidelines Comment'' in the subject line. During the first year of
implementation, the NCI will review any additional comments and
experience with the guidelines to evaluate a possible need for future
guidelines modification.
FOR FURTHER INFORMATION CONTACT: Implementation assistance and
inquiries should be directed to senior staff of the relevant NCI
Extramural and Intramural Program offices.
SUPPLEMENTARY INFORMATION:
I. Introduction
The guidelines assembled in this document are intended as a first
step toward unifying policies and procedures for NCI-supported
biorepositories. This process was initiated by the NCI through a
multiyear process that began in 2002, including a 2004 report compiled
for the National Cancer Advisory Board that showed substantial
heterogeneity in biorepository management practices across the
Institute (NCAB 2004). This study showed that NCI-supported
biorepositories are not optimized in terms of operational, legal, and
ethical policies and procedures, nor are they coordinated to provide a
unique resource value. Specifically, it showed that:
The NCI invests more than $50 million annually in
biorepository programs, not including biorepositories supported through
individual investigator grants, such as R01s.
The 125 programs included in the study collected,
maintained, and/or stored approximately 4 million human biospecimens in
FY 2003.
These programs support basic, epidemiologic,
translational, and clinical research.
Most programs collect frozen biospecimens and support
genomic and proteomic research.
Across the broad range of programs, there are no common
standard operating procedures (SOPs) or Quality Assurance/Quality
Control (QA/QC) measures.
The programs lack a common database.
There is no consistent, defined mechanism to access NCI-
supported biospecimen resources.
II. Background
In 2005 the NCI took several actions to respond to these findings,
including establishment of the Biorepository Coordinating Committee
(BCC) in early 2005. The BCC is advisory to the NCI's Office of
Biorepositories and Biospecimen Research (OBBR). The primary purpose of
the BCC is to work with the OBBR to coordinate the NCI's
biorepositories in a manner that optimizes the quality and
accessibility of biospecimens for the broad cancer research community.
Toward this goal, the OBBR and the BCC organized two workshops during
the summer of 2005 to inform the development of specific
recommendations on policy and operational issues. These workshops,
which were based on the development of a series of white papers that
consolidated documents and the overall knowledge base in biospecimens,
brought together diverse representatives from the cancer research
community as well as ethics, policy, and legal experts to discuss and
propose approaches that could help unify, integrate, and improve the
transparency of NCI-supported biorepository activities. The report and
recommendations that resulted from the workshops are summarized in the
document Harmonizing Processes and Policies for NCI-Supported
Biorepositories, which was presented to the National Cancer Advisory
Board in September, 2005. The report can be found at https://
biospecimens.cancer.gov/biorepositories/bcc_summary.asp.
NCI defines a biorepository as a place, room, or container where
human biospecimens are stored. Biorepositories may vary considerably,
ranging from formal organizations to informal collections of materials
in an individual researcher's freezer.
Currently biorepositories serve as critical resources to the
research community in the performance of postgenomics cancer research.
It is becoming increasingly important that all biorepositories strive
to achieve the best possible biospecimen quality, which would
necessarily call for the adoption of consistent documentation,
collection, processing, storage, and retrieval guidelines such as those
outlined in this document. The workshops' recommended approaches were
reported to the NCAB in September 2005. Proposed approaches, as well as
additional meetings and work over the
[[Page 25185]]
past 3 years, form the basis of the first-generation NCI biorepository
guidelines. These guidelines will be distributed to managers of all
NCI-supported intramural and extramural biorepositories, who will be
initially asked to conform to them on a voluntary basis. It is
important to note that developing a workable set of guidelines is an
evolving process that, with the emergence of new technologies and
clinical practices, will require periodic revision. Therefore, these
guidelines will be revised iteratively, with input from researchers,
biorepository managers, advocates, policymakers, and related
stakeholders.
III. Guidelines
Overview
1. Technical and Operational Guidelines
A. Biospecimen Collection, Processing, Storage, Retrieval, and
Dissemination
1. Collect and process biospecimens under conditions appropriate
for each biospecimen type and for the intended analyses, using
collection protocols that are based on authoritative best practices or
solid research data, when available. Ensure that proper informed
consent protocols are followed.
2. Base all protocols on SOPs that are established using
authoritative best practices or solid research data, when available.
3. Maintain a thorough and consistent level of biospecimen
annotation while maintaining donor patient privacy pursuant to informed
consent provisions.
4. Use a computerized inventory system that tracks the specific
position of every stored aliquot. Each storage container should be
labeled with a unique identifier. All other relevant information should
be tied to this unique identifier. Inventory systems should contain
security provisions sufficient to safeguard privacy and other informed
consent provisions.
5. Develop a comprehensive quality management system (QMS).
Standardized protocols should be applied consistently to ensure
biospecimen quality and to avoid introducing variables into research
studies. Document all collection and processing steps in the
computerized inventory tracking system.
6. Ensure that all laboratory personnel are well qualified, trained
to adhere to biorepository SOPs, and monitored for high-quality
performance.
7. Ensure that a pathologist directs the collecting and processing
of surgical and autopsy biospecimens to ensure that clinically
important issues related to the biospecimens are adequately and
accurately addressed and that patient care is not compromised.
8. Store biospecimens in a stabilized state. In selecting the
biospecimen storage temperature, consider the biospecimen type, the
anticipated length of storage, the biomolecules of interest, and
whether goals include preserving viable cells. Use stabilizing agents
as appropriate. Storage vessels should be durable under planned storage
conditions. Follow consistent freezing and thawing protocols to ensure
consistent quality for assays.
9. Establish rules for biospecimen disposal before storing the
biospecimens in the biorepository and monitor compliance with the
rules. Consider the anticipated storage interval when selecting storage
conditions.
10. For tissue biospecimens, minimize the time for collection and
processing as much as possible (unless inadequate processing time is
known to interfere with the analysis method); reduce biospecimen
temperature as soon as possible after collection. Optimal processing
times may vary for other types of biospecimens depending on the
analysis method for which they are used.
11. Establish inventory tracking systems and storage organizational
methods to minimize disruption of the stable environment during sample
retrieval.
12. Regularly review the performance of all long-term storage
systems and equipment using standardized protocols.
13. Choose biospecimen containers with analytical goals in mind.
This may require, for example, screening of containers for trace metals
that may interfere with laboratory analyses.
14. Adhere to biosafety, packaging, and shipping regulations. Use a
tracking system for biospecimen shipments. The biorepository should
notify a recipient before shipping to confirm that the recipient can
accept the package and properly store the biospecimen.
15. Retrieve biospecimens from storage according to SOPs that
safeguard biospecimen quality.
16. When it is necessary to control biospecimen temperature during
shipping, consider the shipping time, distance, climate, season, and
method of transportation and modify distribution schedules accordingly,
if possible. Ensure proper temperature during shipment, taking into
account the type of biospecimen and its intended use. Tracking devices
may be useful to ensure proper temperature throughout the shipment
duration.
17. Prior to shipment, execute appropriate Material Transfer
Agreements (MTAs) addressing donor privacy, as appropriate,
intellectual property (IP), data sharing, and other similar
requirements.
18. Consult International Society for Biological and Environmental
Repositories (ISBER) best practices (ISBER 2005) for guidance on
international transport regulations (governed by the International Air
Transport Association) and information on classifying biospecimens for
shipment. Train personnel in the shipment of biospecimens and update
their training every 2 years. Maintain training records for all
employees involved in shipping.
B. Collecting and Managing Clinical Data
1. Strive to collect and store all relevant clinical or
epidemiologic data associated with a biospecimen, including, as study
requirements dictate, longitudinal data. Follow applicable informed
consent requirements and institute appropriate security/data-access
control measures to address privacy issues. The NCI will work with
biorepositories to establish a minimal ``universal'' clinical data set.
2. Use an informatics system that tracks all aspects of biospecimen
collection, processing, and distribution to prevent biospecimen
identification discrepancies and to support annotation.
3. Comply with applicable privacy and human subjects protection
regulations governing the acquisition of biospecimens and associated
clinical data. Link biospecimens to clinical data in compliance, as
applicable, with the Health Insurance Portability and Accountability
Act of 1996 (HIPAA) and U.S. Department of Health and Human Services
(HHS) and U.S. Food and Drug Administration (FDA) human subjects
protection regulations.
C. Quality Assurance/Quality Control (QA/QC)
1. Adhere to a written QMS. The QMS should describe the
biorepository's QA/QC programs and approaches for ensuring that program
requirements are met.
2. Require that staff be trained in QA/QC and maintain training
records.
3. The SOPs should be printed in a manual that is readily available
to all laboratory personnel and dated according to the most recent
revision. The SOPs should state policies and define and describe
procedures in detail. Develop procedures for
[[Page 25186]]
periodically reviewing and revising SOPs as necessary.
4. Establish security systems, including equipment monitoring and
alarm systems that are monitored both locally and remotely, with plans
to respond at any time. Emergency power systems should be ready to
operate all critical equipment during power outages.
5. Use a data management system that includes a computerized
inventory tracking system with appropriate security/access-control
safeguards.
6. Develop a facility disaster plan based on a local area risk
assessment. The plan should include appropriate measures to protect
personnel and equipment during a disaster.
7. Maintain and repair all equipment according to SOPs. Establish
preventive maintenance schedules.
D. Biosafety
1. Assume that all human biospecimens are potentially infective and
biohazardous. Use universal precautions practices in biorepositories
similar to those used in other laboratories and clinical settings.
Handle biospecimens according to, at a minimum, Biosafety Level 2 (BSL-
2) as outlined in the CDC/NIH booklet Biosafety in Microbiological and
Biomedical Laboratories.
2. Immunize employees (e.g., for hepatitis) when appropriate
vaccines are available.
3. Develop a safety program and associated training procedures by
identifying governmental and accrediting agency requirements regarding
biohazards and likely sources of current information concerning
laboratory biosafety. Among the agencies that oversee laboratory
biosafety programs are the Occupational Safety and Health
Administration (OSHA), the CDC, and the Clinical and Laboratory
Standards Institute (CLSI).
4. Identify and address risks and other general issues of
biosafety. Identify frequent biorepository activities and analyze
safety issues involved with each activity. Take appropriate actions to
ameliorate hazards.
5. Document all incidents where personnel are exposed. Response and
treatment protocols should be prepared to be available in the event of
potential exposure and infection.
6. Establish indemnification agreements with users of biospecimens
except where prohibited by law.
7. Follow U.S. regulations concerning chemical safety, which
protect employees from exposure to biohazardous levels of chemicals.
Biorepositories should also develop a chemical hygiene plan in
compliance with the OSHA's laboratory standards.
8. Properly ground freezers and other electrical equipment.
9. Establish fire emergency plans and practice them regularly.
10. Take precautions to prevent repetitive strain and back injuries
and other accidents and injuries typical of the laboratory/
biorepository environment.
11. For any laboratory or biorepository that processes radioactive
materials, ensure that proper training of personnel and acquisition of
necessary equipment to obtain licenses from the Nuclear Regulatory
Commission (NRC) and/or local agencies are carried out.
E. Biorepository Informatics: Data Management and Inventory Control and
Tracking
1. Assign a unique identifier (such as a number or barcode) to each
biospecimen at the time of collection. Identify specific clinical and
epidemiological data by the same number and/or barcode. Use the number
or code to track a biospecimen from collection through processing,
storage, and distribution.
2. Update the biorepository database each time a biospecimen is
moved within or out of the biorepository.
3. Use informatics systems that support the linking of biospecimens
with associated research data and, when available, the limits, if any,
on the use of the sample. When applicable, track the levels of consent
that each patient has given for the use of their biospecimens and
whether that consent has been withdrawn.
4. To protect the health information of patients, adhere to privacy
laws with respect to informatics systems.
5. The NCI Center for Bioinformatics (NCICB) has developed
additional bioinformatics guidelines and tools that address the issues
of functionality of informatics systems, integration with existing
systems, and interoperability among individual systems at
biorepositories. The NCICB has developed the Cancer Biomedical
Informatics Grid, or caBIG \TM\. caBIG (see https://cabig.nci.nih.gov/)
(NCI 2005) is a voluntary network or grid connecting individuals and
institutions to enable the sharing of data and tools. caBIG silver-
level compatibility is recommended for NCI-supported biorepositories
(see https://cabig.nci.nih.gov/guidelines_documentation).
2. Ethical, Legal, and Policy Guidelines
A. Informed Consent
1. Use a process of informed consent for each biospecimen
collection event. The NCI will provide all of its biorepositories with
a sample consent template, which should be reviewed and adapted by the
relevant IRB. Biorepositories should adapt the template to their needs.
The consent form should address the use of biospecimens or data by
private entities, the possible future development of commercial
products through research, and the release of individual research
results to participants.
2. Allow research participants to specify the types of research for
which their biospecimens may be used, including use in additional
future projects.
3. Document clear policies for biospecimen and data access.
4. Develop policies to handle biospecimens and data for which
consent has been withdrawn.
5. Monitor the need for obtaining informed consent when the
biorepository houses identifiable biospecimens and data from children,
that were obtained with parental or guardian permission, when a child
reaches the legal age to consent for a research study.
6. Consider FDA regulations concerning research on existing
biospecimen collections, for any study that could involve FDA oversight
in the future. These regulations do not exempt in vitro studies from
the requirement for documented, institutional review board (IRB)-
approved consent from the sources, even in cases where biospecimens
have been deidentified.
7. Establish and document transparent policies governing the
retention of records and biospecimens. For clinical biospecimens, State
laws may also govern how long records must be retained. For research
specimens, the ideal is permanent storage if resources and storage
space are sufficient. However it should be noted that biospecimens
degrade over time and/or may no longer be useful due to changes in
science and technology.
For additional information about IRBs and the requirement for the
HHS Office for Human Research Protections (OHRP)-approved assurance of
compliance, see the OHRP Web site at https://www.hhs.gov/ohrp/. Specific
OHRP guidance concerning tissues and biorepositories is included among
the documents referenced at https://www.hhs.gov/ohrp/policy/
index.html#tissue.
[[Page 25187]]
B. Access to Biospecimens and Data
1. Establish clear guidelines for sample distribution (and clinical
data sharing) consistent with ethical principles, prevailing laws, and,
if applicable, consent form language. The guidelines should be flexible
so that biorepositories may respond to changing scientific needs.
2. Ensure that investigators have timely, equitable, and
appropriate access to human biospecimens and associated clinical data
stored at NCI-supported biorepositories without undue administrative
burden. Access should be guided by policies and procedures such as the
following:
Scientific validity of the research proposal.
Investigator's agreement covering confidentiality, use,
disposition, and security of biospecimens and associated data.
Investigator's written agreement in a Material Transfer
Agreement to comply with the NIH Research Tool Guidelines. (https://
ott.od.nih.gov/policy/rt_guide_final.html).
Investigator and institutional research qualifications.
Ethical oversight where required by Federal regulations or
local institutional requirements.
Adequate funding for the biorepository.
In addition to the above, the following points should also be
considered while assessing access privileges:
a. Biospecimens and associated clinical data should be
appropriately matched with the specific scientific investigations for
which they are intended.
b. The local decision-making body should take local principles into
account. Ethical considerations should come first among principles that
guide the decisionmaking process.
c. Biorepositories should establish an appeals process for
addressing disputes over allocation decisions.
3. Apply guidelines to all new collections and, whenever possible,
to existing collections.
4. If applicable and where monetary charges are necessary, charge
only to recover costs as appropriate to retrieve and disseminate
specimens.
5. If a biorepository must close due to lack of funding or
otherwise cannot maintain or use the biospecimens, the availability of
biospecimens should be announced for transfer to the research community
(e.g., via a Web site). Transfer should be consistent with the informed
consent and allowable use of biospecimens.
6. Within the biorepository, use a system of data access with
defined levels of access privileges. Restrict access to research
subjects' identities and medical, genetic, social, and personal
histories to necessary biorepository staff members who need such access
as part of their duty or to persons permitted access by law. Monitor
personnel compliance with access restrictions.
7. Store human biospecimens only for research purposes according to
approved protocols, not to serve individual research participants'
needs or wishes.
C. Privacy Protection
1. Institute the level of security appropriate to the type of
biorepository and to protect study participant privacy for the
biospecimens stored in the biorepository.
2. In applications for support, include documentation of policies,
mechanisms for auditing the effectiveness and enforcement of policies,
required training, and security measures pertaining to employee access
to data or biospecimens.
3. Institute the level of security appropriate to the type of
biorepository.
D. Custodianship
1. In the application for proposal for biorepository funding,
propose plans for formal and continuing responsibility for
custodianship (not ownership) of collected biospecimens and associated
data as part of the biorepository protocol.
2. In the application for proposal for biorepository funding, also
address plans for the handling and disposition of biospecimens and
associated data at one or more of the following points: (a) End of the
active support of the grant, (b) accomplishment of the specific
research objectives of the study, (c) depletion of biospecimens, and/or
(d) achievement of critical data endpoints.
3. Require disclosure of financial or professional conflicts of
interests of biorepository personnel, consistent with institutional
procedures and policies.
4. Use clear and specific informed consent language to ensure that
those who contribute biospecimens and/or data for research purposes are
fully informed that the research done with these biospecimens may help
develop products, tests, or discoveries that may have commercial value
(also see A.1. above).
E. Intellectual Property
1. For the transfer of materials in academic-industrial
collaborations, use the NIH Simple Letter Agreement (SLA), the Uniform
Biological Material Transfer Agreement (UBMTA), or other MTA with terms
consistent with the NIH Research Tools Policy and NIH data sharing
policies, e.g., the Final NIH Statement on Sharing Research Data. These
agreements should be modified where necessary to cover human subjects
research. A sample NIH SLA modified to address the transfer of human
biospecimens is attached as Appendix 2.
The following Internet sites are relevant to this issue:
https://ott.od.nih.gov/policy/research_tool.html.
https://www.autm.net/aboutTT/aboutTT_umbta.cfm.
https://grants1.nih.gov/grants/policy/data_sharing/
index.htm.
2. Recognize that biorepository staff members as custodians of
biospecimens are not a priori considered inventors under patent law for
inventions made using materials distributed by the biorepository. In
general, the staff should be informed that one whose sole contribution
to an invention consists of the routine collection, handling, storage,
and disbursement of biospecimens might not rise to the level of
``inventor'' of an invention. Inventorship is determined by patent law
and must be considered on a case-by-case basis by trained legal
personnel.
3. Recognize that biorepositories have no inherent rights to future
IP, including reach-through rights in inventions made by investigators
using samples obtained from the biorepository.
4. Ensure through MTAs that research data developed using
biospecimens are made available to the research community. (See sample
in Appendix 2.)
Guidelines Details
1. Technical and Operational Guidelines
A. Biospecimen Collection, Processing, Storage, Retrieval, and
Dissemination
Although the specific mission of a biorepository will result in the
use of different collection and processing procedures, common
principles should apply to all biospecimen types. The guidelines below
are based on current, published information and will be revised
periodically as new information is generated from ongoing research
projects.
Determining Which Biospecimens To Collect
1. Collection priorities should be based on the defined purpose of
each NCI-supported biorepository in supporting specific types of
research. Biorepositories should track researchers' requests to guide
the collection and
[[Page 25188]]
storage process and to attempt to anticipate which biospecimen types
(e.g., matched blood, serum, plasma, buffy coat, saliva, urine) will
make the biorepository most useful for future research. Researchers
should involve biorepository scientists as early as possible during
study planning to develop a strong approach for biospecimen collection.
2. NCI-sponsored biorepositories should strive to collect materials
from diverse populations representative of the United States. However,
this goal may depend on the specific purpose, such as the disease
focus, of the NCI studies supported by the biorepository.
Biospecimen Collection and Processing
Biospecimen collection occurs in many contexts, including surgical
procedures, organ donation and transplantation, autopsies,
venipuncture, and evacuation; for population-based studies, collection
may occur in field locations such as hospitals or study participants'
homes.
1. The NCI will provide guidance in the future on guidelines for
biospecimen collection while allowing for flexibility when new
methodologies are warranted. SOPs will enhance the comparability of
research results and help make biospecimens interchangeable. This
guidance will include:
Collection protocols for various biospecimen types based
on solid research data.
A high level of biospecimen annotation, consistent across
NCI-sponsored biorepositories, recording key data, such as time to
banking, time of ischemia, time of biospecimen excision, character of
chemical preservation, time of fixation, etc. For paraffin-embedded
biospecimens, it may prove important for the interpretation of analytic
data derived from these biospecimens to have documentation of the
specific protocol through which a biospecimen was processed before it
was placed in paraffin. Appropriate and complete documentation
surrounding biospecimen collection, processing, and storage are
essential and relevant to the quality of research data to be obtained.
Uniform, nonredundant sample nomenclature across NCI-
sponsored biorepositories.
State-of-the-art sample tracking procedures and supporting
informatics.
A QMS to ensure adherence to standards.
2. Biorepositories should record data relevant to research goals.
As appropriate for the study, for all types of biospecimens, the amount
of time elapsed during collection and processing should be recorded and
tracked in the biorepository informatics system. Biorepositories should
also record data on the collection and processing procedures used.\1\
---------------------------------------------------------------------------
\1\ NCI will support research to determine the effects of
various biospecimen processing methods on analyte preservation.
Biorepositories should continually attempt to improve collection and
processing methods to maximize the quality of materials for
molecular analysis. NCI-supported biorepositories should document
the effects of different processing methods and develop guidelines
for biospecimen processing based on the goal of preserving various
analytes.
---------------------------------------------------------------------------
For tissue biospecimens, the time for collection should be
minimized as much as possible; biospecimen temperature should be
reduced as soon as possible after collection. Biospecimen processing
time should be minimized if freezing is the stabilization endpoint. If
fixation is the stabilization endpoint, control of processing time
between maximum and minimum durations may be required.
Rapid processing may not be as critical for other types of
biospecimens, such as blood, and optimal processing times may vary
depending on the analysis method for which a biospecimen is used.
Examples of data to record for blood biospecimens include collection
time relative to treatment or other interventions, time of day at
collection, whether the patient was fasting, and whether he or she was
sitting or standing during collection.
3. NCI-supported biorepositories should seek to use the processing
method that preserves the greatest number of analytes, unless the aim
of a particular study specifically requires alternative processing. To
select processing methods (such as freezing, fixation, and the use of
stabilizing additives), a biorepository should define its goals and the
research priorities of the studies it supports. Procedures should
maximize the potential for biospecimen distribution and research use.
When possible, individual biospecimens should be divided into aliquots
or fractions and/or preserved by multiple processing methods.
Biorepositories that validate biospecimen quality for specific research
applications should use as little of the biospecimen as possible.
Biorepository Personnel
Personnel involved in biorepository management and use, including
researchers, technicians, nurses, surgeons, pathologists,
anesthesiologists, and assistants, should be aware of the purpose and
goals of the biorepository. To ensure the collection of high-quality
biospecimens for research, collection, and processing, personnel should
be well qualified and trained to adhere to applicable SOPs. A
pathologist should be involved for expertise in collecting and
processing surgical and autopsy biospecimens. It is important that a
pathologist determine what tissue is necessary for pathologic diagnosis
and what is excess and can be given to the biorepository for research
purposes. This is crucial in ensuring that patient care is not
compromised.
Biospecimen Storage
The following general guidelines section applies to all types of
biospecimens, such as wet tissue, frozen tissue, paraffin-embedded
tissue, glass slides, blood, serum, and urine. Individual types of
biospecimens should be handled according to SOPs specific to each
biospecimen type and to the biomolecules to be analyzed in that
biospecimen type (e.g., RNA, DNA, protein, lipid, etc.).
1. Standardized protocols should be applied consistently in
preparing and storing biospecimens to ensure their quality and to avoid
introducing variables into research studies. Biorepositories should
record storage conditions and especially deviations from SOPs,
including information about temperature, thaw/refreeze episodes, and
equipment failures. Each piece of storage equipment should have a log
containing the manufacturer's manual, records of equipment operation,
and descriptions of maintenance, repairs, and calibration. Storage
conditions should be recorded automatically, and the performance of all
long-term storage systems and equipment should be reviewed annually
using standardized protocols (Mager et al. 2004). Calibrated devices
should be used to validate automated temperature measurements.
2. Biospecimens should be stored in a stabilized state. For blood
biospecimens, all components should be stored where possible. This is
particularly important for large, population-based studies, for which
it is difficult to predict how biospecimens will be analyzed in the
future.
A biorepository should avoid unnecessary thawing and refreezing of
frozen biospecimens or frozen samples of biomolecules extracted from
the biospecimens. When thawing/refreezing is necessary, a biorepository
should follow consistent and validated protocols to ensure continued
stability of the analytes of interest. Methods, such as inventory
tracking, should be established to minimize disruption of the stable
environment during sample retrieval.
In selecting biospecimen storage temperature, consider the
biospecimen type, the anticipated length of storage,
[[Page 25189]]
the biomolecules of interest, and whether goals include preserving
viable cells. Paraffin blocks should be stored at temperatures below 80
[deg]F (27 [deg]C) in an area with pest and humidity control. In the
case of liquids, such as blood and urine, consider separating
biospecimen components before storage to preserve each constituent
under its optimal condition. However, whole-blood (rather than
fractional) cryopreservation is recommended as an efficient and cost-
effective option for processing viable cells in large-scale studies
(Hayes et al. 2002). When in doubt as to possible future uses, store
tissues in the vapor phase of liquid nitrogen freezers to ensure long-
term viability. Lower storage temperatures and the use of a
cryoprotectant (such as DMSO) are recommended to maintain viable cells
for long periods of time (ISBER 2005). Planned analyses should consider
the difference in temperature between the bottom and top of a liquid
nitrogen freezer; the temperature at the top of a liquid nitrogen
should be consistently below -140 [deg]C.
Avoid self-defrosting freezers that cause damaging effects to
biospecimens, even those in capped tubes, by enhancing desiccation
(Holland et al. 2003).
3. Biorepositories should establish rules for disposing of
biospecimens before storing them. Consider the anticipated storage
interval when selecting storage conditions. If possible with available
resources, store control biospecimens under each condition used in the
biorepository and assess these control biospecimens at regular
intervals to assess the effects of storage time on desired qualities
such as viability, preservation of morphology, and biochemical
integrity.
4. Storage vessels should be stable under planned storage
conditions. Vial size and number should be suitable for typical
aliquots, anticipated investigator uses, and number of investigators.
Volume and type of containers should prevent sample loss and minimize
the costs of collection and storage. Screw-cap cryovials should be used
for long-term, low-temperature storage; glass vials or vials with popup
tops are unsuitable for long-term storage (Caporaso & Vaught 2002).
Wrap snap-frozen biospecimens in aluminum foil or place them in
commercial storage containers to minimize desiccation (Grizzle 2004).
Choose labeling and printing systems that will be stable under the
long-term storage conditions appropriate for the biospecimen. Face
shields and appropriate gloves should be worn for worker protection.
Biospecimen containers should be chosen with analytical goals in
mind. For example, when samples will be tested for the presence of
xenobiotic chemicals, containers should be free of xenobiotic
contamination. Certified RNase-free containers should be used for all
steps in handling RNA samples.
5. Each storage container should have a unique identifier for the
biospecimen aliquot that is firmly affixed to the container, clearly
and legibly marked, and able to endure storage conditions. All other
relevant information should be tied to this unique identifier, bearing
in mind study participant confidentiality, security, and informed
consent provisions. Inventory systems should relate the presence of
each aliquot to its specific position in a specific freezer,
refrigerator, or shelf.
6. Automated security systems should continuously monitor the
function of storage equipment. Backup equipment, such as an alternative
power source, should be automatically activated when necessary.
Emergency procedures should be in place if freezers fail or exceed a
preset temperature. SOPs should be in place for alerting personnel and
for moving biospecimens to alternative storage locations. Biorepository
SOPs should include procedures for responding to severe weather and
floods as well as specific power and equipment failures. Personnel
should be trained in safety related to biospecimen handling, use of
equipment, and SOPs for responding to emergency situations. For
particularly valuable biospecimens, an empty, functioning freezer
should be available in case of single-freezer failure. Also consider
storing replicate biospecimens in at least two different locations to
safeguard against storage or handling failures (NBN Blueprint 2003;
Landi and Caporaso 1997; Caporaso and Vaught 2002; Eiseman et al.
2003).
Shipping Biospecimens
1. Retrieval. Biospecimens should be retrieved from storage
according to biorepository SOPs that safeguard biospecimen quality.
Before retrieval, systems should be in place to verify that the request
has received approval from the appropriate committee(s). SOPs should
include a checklist to confirm completion of the retrieval process.
Document deviations during retrieval, such as inventory
inconsistencies, damaged containers, thawing or refreezing, etc.
2. Shipping conditions. When seeking to regulate biospecimen
temperature during shipping, consider the shipping time, distance,
climate, season, method of transportation, and regulations as well as
the type of biospecimens and their intended use (Landi and Caporaso
1997). The number of biospecimens per package also affects whether
temperature can be maintained for all biospecimens in the shipment.
Send a prior test shipment, of frozen water samples for example, before
shipping extremely valuable samples, to check the adequacy of coolants
and any potential obstacles to a successful shipment. In addition,
conditions throughout a critical shipment can be monitored by enclosing
a device that records temperature during transport. Placing samples in
sealed bags with a desiccant can be used to control humidity.
To maintain proper temperature during shipping, use appropriate
insulation, gel packs, dry ice, or liquid nitrogen (dry shipper). To
maintain refrigerated temperatures (2[deg]C to 8[deg]C), use gel packs
conditioned at -15[deg]C or phase change material rated for
refrigerated transport. To maintain frozen temperatures, use gel packs
conditioned at or below -20[deg]C. For frozen temperatures at -
70[deg]C, use dry ice pellets or sheets. Note that dry ice is
considered a hazardous substance for shipping purposes. For maintaining
temperatures at or below -150[deg]C, use a liquid nitrogen dry shipper
(ISBER 2005). Use insulated packaging to protect biospecimens from
extremely hot or cold ambient conditions. Whenever intending to
maintain samples below ambient temperature, include enough refrigerant
to allow for a 24-hour delay in transport (ISBER 2005). Temperature-
sensitive material should be handled by a courier with resources to
replenish the refrigerant in case of a shipping delay (ISBER 2005).
Paraffin blocks and slides should be shipped at room temperature in
an insulated package via overnight carrier. The use of insulated
packages is important to minimize the effect of temperature
fluctuations and to protect the blocks from temperatures higher than
80[deg]F (27[deg]C). Flat biospecimens, such as dried blood samples on
absorbent pads or cards, should be enclosed in watertight plastic bags
and shipped in a sturdy outer package or commercial envelope. Samples
on glass or plastic slides should be cushioned and shipped inside a
sturdy (not flexible) outer package. Triple packaging should be used
for liquid samples.
3. Documentation. The biorepository should notify a recipient
before shipping to confirm that the recipient can accept the package
and properly store the biospecimens. Packages should be bar-coded and
tracked by the biorepository and the recipient. A
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biorepository shipping log, either written or computerized, should
track shipments from and to the biorepository and include the following
information: shipment/invoice number; recipient (or source); date
shipped (or received); courier name and package tracking number; sample
description; number of samples shipped (or received); condition on
arrival; study name and number, if available; key investigator's name;
and signature of biospecimen recipient (ISBER 2005).
Standardized paperwork should accompany shipments. Biorepository
personnel should send a shipping manifest, a list of sample
identification numbers, and descriptions of samples electronically to
the biospecimen recipient and include a hard copy of the manifest in
the shipment itself. Identifying data should be available for the use
of shipping or customs agents as well. Some shipping agents require an
itemized list of contents between the secondary and outer packaging of
diagnostic biospecimens.
Biorepository personnel should verify biospecimen labels and
pathology reports against the packing list for consistency and
correctness.
A feedback questionnaire should be enclosed in each shipment for
QA/QC purposes, requesting feedback about the quality of samples
received (Eiseman et al. 2003).
4. Regulatory considerations. Consult ISBER Best Practices (ISBER
2005) for information concerning international transport regulations
and classifying biospecimens for shipment. Failure to conform to
international air transport regulations will result in delay or refusal
of shipment and probable biospecimen deterioration. Regulations must be
followed precisely, since improperly packaged or labeled goods will be
refused for transport by airlines or delayed at customs (Holland et al.
2003). For international shipments, biorepository personnel should
prepare safety declarations for foreign customs (Landi and Caporaso
1997).
For packaged biospecimens, International Air Transport Association
(IATA 2004) regulations require three packaging components: (1) A
primary inner receptacle, (2) secondary packaging, and (3) rigid outer
packaging. The primary receptacles should be packed in the secondary
packaging so that, under normal conditions of transport, they cannot
break, be punctured, or leak their contents into the secondary
packaging. Secondary packaging should be secured in outer packaging
with cushioning material. Secondary containers for diagnostic
biospecimens should be certified by the manufacturer prior to use.
Outer packaging is regulated as to material, size, and ability to
withstand a 1.2-meter drop test as outlined in IATA Section 6.6.1.
Leakage of the contents should not affect the cushioning material or
outer packaging (IATA 2004). Some shipping agents designate the same
three layers of packaging and absorbent material between outer and
secondary packaging. Specifics of the primary containers for diagnostic
biospecimens, liquid biospecimens, and solid biospecimens are described
on the shipping agents' Web sites. Styrofoam[supreg] chests containing
dry ice may be used to ship samples that should be maintained at low
temperatures (Landi and Caporaso 1997). However, the shipping agent may
exclude Styrofoam[supreg] as an acceptable outer packaging. To confirm
that shipping conditions meet sample needs, shipping personnel should
review test reports from packaging that has been tested to meet
regulation requirements. Packaging should be used in the same
configuration under which it was tested (ISBER 2005).
Consult OSHA regulations to determine whether a substance requires
a biohazard label. Ship Category A infectious substances in accordance
with IATA Packing Instruction (PI) 602 (IATA 2004). Ship Category B
infectious substances (also designated as diagnostic specimen, clinical
specimen, or biological specimen, category B) in compliance with IATA
PI 650.
Ship dry, noninfectious biospecimens (e.g., dried blood, tissue,
saliva, or hair) with special packaging as specified by the shipping
agent. Wet-fixed biospecimens shipped in formalin/formaldehyde should
include ``ICAO/IATA'' under additional handling information (Grizzle
2004).
5. Training. Training of personnel for shipment of biospecimens is
strongly recommended (ISBER 2005). Training should be updated at least
every 2 years. Dangerous goods training may be required for some
biorepository personnel. A record of training should be maintained of
all employees involved in the shipping process. Training and
certification are available through various shipping vendors (ISBER
2005). On completion of training, the training organization issues a
certificate of completion.
B. Collecting and Managing Clinical Data
Extensive annotation of tissue biospecimens is crucial to the
overall usefulness of the biorepository as a resource for scientific
research (Eiseman et al. 2003). Biorepositories store biospecimens
collected using multiple methodologies and procedures, including tissue
collection, blood draws, and buccal cell and urine collections.
Researchers rely on banked biospecimens for a wide variety of purposes,
including target discovery and validation, prevention research,
research on early detection, genetic studies, and epidemiologic
analyses. The data recorded by biorepositories depend on the types of
biospecimens they collect and the studies they support. It is
critically important for excellence in research that NCI-supported
biorepositories use SOPs for biospecimen collection, processing, and
storage. While harmonization of these procedures is the ultimate goal,
the NCI is engaged in research to identify the best set of protocols
and methods to produce high-quality biospecimens. Regardless,
biospecimens must maintain donor privacy in all collection of clinical
data.
Determining Data Sets
1. The NCI will define the minimal clinical data to be collected
for all biospecimens, as appropriate for the research protocol at NCI-
supported biorepositories. This universal set will change over time.
Biorepositories should adopt the harmonized nomenclature being
developed by the NCI for clinical data and establish algorithms to
translate raw data into standard nomenclature.
2. NCI-supported biorepositories should establish additional data
categories for specific types of research.
Collecting Clinical Data
1. NCI-funded biorepositories should strive to collect and store
all relevant clinical data associated with a biospecimen. This will
maximize the use of biospecimens for current and future short-term and
longitudinal studies. Biorepositories should encourage participating
investigators to annotate biospecimens to the fullest extent possible
consistent with biorepository goals and/or study design. Data
collection activities should conform to FDA requirements if and where
applicable, so that the data can be cited and/or used in
Investigational New Drug and Investigational Device Exemption
applications.
2. The NCI will develop a tiered system of clinical data
annotation, which will define the potential of any given biospecimen in
supporting high-quality research and will guide decisions on the
appropriate use of biospecimens by the scientific community.
[[Page 25191]]
3. NCI-supported biorepositories should employ a uniform,
nonredundant vocabulary (caBIG common data elements [CDEs]) for
clinical data across sponsored biorepositories.
4. NCI-supported biorepositories should track researchers' requests
for specific clinical data to guide refinements of data collection
guidelines.
5. NCI-supported biorepositories should employ a method for
validating the clinical data collected. These data should be validated
to ensure accuracy in downstream scientific research.
6. NCI-supported biorepositories should comply with applicable
privacy and human subjects protection regulations governing the
acquisition of biospecimens and associated clinical data. Biospecimens
should be linked to clinical data in compliance, as applicable, with
the HIPAA regulations and with HHS and FDA human subjects protection
regulations.
Longitudinal Clinical Data \2\
---------------------------------------------------------------------------
\2\ The NCI plans to partner with its cancer centers, advocacy
groups, and relevant stakeholders to collect longitudinal data
related to particular studies.
---------------------------------------------------------------------------
1. As the study requirements dictate, NCI-supported biorepositories
should collect and store longitudinal data following applicable
informed consent requirements.
2. Depending on the study design, information linked to samples
should include demographic data, lifestyle factors, environmental and
occupational exposures, cancer history, structured pathology data, any
additional diagnostic studies, information on initial staging
procedure, treatment data, and any other information relevant to
tracking a patient's future status for clinical outcomes. NCI-supported
biorepositories should facilitate followup with patients.
3. NCI-supported biorepositories should maintain identifying and
contact information as detailed in the study protocol and as permitted
under law and by patient consent to enable biospecimen use for
longitudinal studies.
4. NCI-supported biorepositories should establish, as necessary,
new policies and protocols to facilitate the submission of outcome
data, ensure uniformity and patient privacy, and track treatment and
outcomes.
5. To collect high-quality longitudinal information, NCI-supported
biorepositories should require dedicated and trained personnel to
curate the validation process and QA/QC.
Informatics To Support the Tracking of Data \3\
---------------------------------------------------------------------------
\3\ The NCI intends to assist biorepositories in choosing
informatics approaches that meet the necessary data tracking and
management requirements set forth by the institute.
---------------------------------------------------------------------------
1. A biorepository informatics system should track all aspects of
biospecimen collection, processing, and distribution to prevent the
confusion of samples and to support annotation.
2. A biorepository should comply with applicable privacy laws,
human subjects regulations, and local institutional requirements
governing the acquisition of biospecimens and associated clinical data
(see the section on Ethical, Legal, and Policy Guidelines for more
discussion of clinical data and the protection of patient privacy).
C. Quality Assurance/Quality Control (QA/QC)
NCI-supported biorepositories should develop a formalized QA/QC
policy to minimize errors that could adversely affect scientific
results. QA/QC policies should be customized for the intended and
potential uses of biospecimens in a given biorepository.
QMS
Each biorepository should either establish a written QMS or adhere
to one published by the organization with which the biorepository is
associated. The QMS should describe the biorepository's QA/QC programs
and describe approaches for ensuring that program requirements are met
(ISBER 2005). The QMS should describe procedures for conducting audits
in the following areas:
1. Equipment maintenance and repair.
2. Training records and adherence of staff to required training
schedules.
3. Data management.
4. Recordkeeping.
5. Adherence to SOPs.
SOPs Manual
Each biorepository should develop written policies and procedures
in an SOPs manual. The SOPs should state policies and define and
describe all procedures in detail.
1. Contents. The SOPs manual should specifically include at least
the following information:
Biospecimen-handling policies and procedures, including
supplies, methods, and equipment used.
Laboratory procedures for tests performed in-house and any
biospecimen aliquoting or other processing.
Policies and procedures for shipping and receiving
biospecimens, including the MTAs to be used.
Policies for managing records.
QA/QC policies and procedures for supplies, equipment,
instruments, reagents, labels, and processes employed in sample
retrieval and processing.
Safety programs.
Emergency safety policies and procedures, including the
reporting of staff injuries and exposure to potential blood-borne
pathogens.
Policies and procedures for the investigation,
documentation, and reporting of accidents, errors, complaints, and
adverse outcomes.
Policies and procedures and schedules for equipment
inspection, maintenance, repair, and calibration.
Procedures for disposal of medical waste and other
biohazardous waste.
Policies and procedures regarding the training of
technical and QA/QC staff members.
2. Implementation. The biorepository director and/or the individual
responsible for the QA/QC program should review and approve all SOPs
and associated process validation studies prior to implementation. Upon
implementation, all SOPs must be followed as written.
3. Modifications. Each biorepository should have a document control
program and policies for governing, modifying, or revising SOPs. Each
modification should be approved by the biorepository director or other
appropriate individual(s). Implementation dates should be recorded for
all procedures. All SOPs should be reviewed every 2 years and have the
current date of renewal on the posted copy.
4. Staff access and review. Current copies of the SOPs manual
should be stored in designated locations and available to the staff at
all times. The staff should review new and revised policies and
procedures prior to implementation. Documentation of staff review and
any associated training should be recorded.
D. Biosafety
Laboratories and biorepositories that handle biospecimens expose
their employees to risks involving infectious agents and chemicals, as
well as the general dangers of a laboratory. A predictable, yet small,
percentage of biospecimens will pose a risk to the biorepository
workers who process them. All biospecimens should be treated as
biohazards (Grizzle and Fredenburgh 2001). In addition to taking
biosafety precautions, biorepositories should adhere to key principles
of general laboratory safety.
[[Page 25192]]
Biohazard Precautions
Laboratories and biorepositories must assume that all human
biospecimens are potentially infective and biohazardous, regardless of
whether they are frozen, dried, fixed, processed in paraffin, or
otherwise processed. Human biospecimens are defined as blood, other
bodily fluids, solid tissues, tissue products, and cell lines. The
greatest risks are posed by exposure to the human immunodeficiency
virus (HIV), the hepatitis viruses, and the prion that causes
Creutzfeldt-Jakob disease, but there are additional significant
exposures as outlined by Grizzle and Fredenburgh (2001).
29 CFR 1910.1030 requires that vaccination be offered to all
personnel who may be potentially exposed to human blood, body fluids
and tissues, or other potentially infectious materials. Biorepository
work practices must be based on universal precautions practices similar
to those used in laboratories and clinical settings. Two basic
important safety precautions should be followed in laboratories and
biorepositories that handle biospecimens: Wash hands frequently, and
always wear face protection and gloves when handling biospecimens or
working within or around freezers. Additional good general laboratory
work practices are outlined in Table 4 of Grizzle and Fredenburgh
(2001).
A biorepository must establish clear policies regarding the
inclusion or exclusion of high-risk biospecimens. Human biospecimens
should be handled according to, at a minimum, BSL-2 as outlined in the
CDC/NIH booklet Biosafety in Microbiological and Biomedical
Laboratories (CDC and NIH 1999). Under BSL-2, when biospecimen
containers are opened for processing, they should be handled in a BSL-2
biological safety cabinet (hood). All biorepositories that handle human
biospecimens should operate under the OSHA's blood-borne pathogens
standard and should develop an exposure control plan (29 CFR
1910.1030). Additional precautions apply, as outlined in the CDC
booklet.
Some activities may require higher containment, and in other cases,
less stringent practices may be acceptable. Therefore, it is best to
ensure that biorepository staff members are trained to perform risk
assessments and determine appropriate biosafety levels.
Guidelines
1. Identify governmental and accrediting agency requirements
regarding biohazards and likely sources of current information
concerning laboratory biosafety for use in developing an overall
program in safety and associated training programs. Among the agencies
that oversee laboratory biosafety programs are the OSHA and the CLSI.
The CDC oversees programs that handle Select Agents.
2. Identify risks and other general issues of biosafety. Identify
frequent biorepository activities and analyze safety issues involved
with each activity, and implement suitable controls.
3. Improve biosafety by developing written working guidelines that
are based on Federal and State requirements, experience, and published
information. These guidelines should be reviewed and updated regularly
and modified in response to problems or if they prove ineffective.
4. Develop and implement a training program. Each employee should
receive training in relevant areas of safety before beginning work, and
the training should be updated annually.
5. Record and arrange for treatment for all incidents where
personnel are exposed to biohazards or are potentially infected.
General Laboratory Safety
In addition to biosafety, biorepositories need to follow strict
general safety regulations and procedures. Recommendations regarding
general laboratory safety follow. Additional details and references
regarding biorepository safety can be found in the ISBER Best
Practices, Section J, and Appendix A (ISBER 2005).
1. Chemical safety. Follow U.S. regulations concerning chemical
safety, which protect employees from exposure to hazardous levels of
chemicals in biorepositories, including, for example, formaldehyde used
to fix tissues. Biorepositories should also comply with OSHA
regulations governing occupational exposure to hazardous chemicals in
laboratories (29 CFR 1910.1450).
2. Electrical safety. Freezers and other biorepository equipment
must be properly grounded.
3. Fire safety. Emergency plans must be in place and practiced on a
regular basis. Purchase noncombustible freezers and refrigerators.
4. Physical safety. Repetitive strain and back injuries are typical
occupational biohazards in the biorepository. Take proper precautions
to prevent these and other accidents and injuries typical of the
laboratory/biorepository environment.
5. Radiological safety. Any laboratory or biorepository that
processes radioactive materials requires proper training and equipment
to obtain licenses from the NRC and/or local agencies.
E. Biorepository Informatics: Data Management and Inventory Control and
Tracking
Driven by advances in genomics and proteomics, informatics systems
have become increasingly critical to the research enterprise.
Informatics systems that support NCI-sponsored biorepositories must be
robust and reliable and able to meet changing needs while remaining
interoperable.
An informatics system should support all aspects of biorepository
operations, including (but not limited to) patient enrollment and
consent; biospecimen collection, processing, storage, and
dissemination; QA/QC; collection of patient data; data security;
validation documentation; and management reporting functions. The
system should also manage clinical annotations to the biospecimens and,
where possible, support those patient followup needs permitted by
ethical considerations and appropriate regulations. Biorepository
systems should also be interoperable with those that house endpoint
assay data (e.g., proteomics, genomics) to ensure that integration of
data from multiple sources will be possible. The NCICB has developed
caBIG (see https://cabig.nci.nih.gov/), a voluntary network or grid
connecting individuals and institutions to enable the sharing of data
and tools. The informatics systems selected or developed for new
biorepositories should be caBIG-compatible at the ``silver'' level (see
https://cabig.nci.nih.gov/guidelines_documentation) with the goal of
interoperability with other systems. Where systems for existing
biorepositories are being replaced or upgraded, they should also be
compatible at the silver level. For existing software, migration paths
to silver level compatibility should be identified, with the
expectation that this will become a requirement in later versions of
these guidelines.
General Informatics Guidelines
1. Each biospecimen should be assigned a unique identifier (number
and/or barcode) at the time of collection.
2. Specific clinical and epidemiological data should be identified
by the same number and/or barcode.
3. The same number or code should be used to track a biospecimen
from
[[Page 25193]]
collection through processing, storage, and distribution.
4. The biorepository database should be updated each time the
biospecimen is moved within or out of the biorepository.
Functionality of Biorepository Informatics Systems
1. Biorepository informatics management systems should be based on
use cases and other domain level modeling techniques (e.g., data or
object models) that capture the needs for managing biorepositories.
SOPs for the activities carried out in a biorepository should largely
drive the design of informatics systems.
2. At the biorepository